RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5837
(181 letters)
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 132
Score = 32.8 bits (74), Expect = 0.009
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 70 TFFPCFLFEQF---RRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIE 126
T P F RRYS+ F L+++I ++ +P +++ E+IE
Sbjct: 37 TNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIE 96
Query: 127 DIKRHL 132
+ ++ L
Sbjct: 97 ERRQGL 102
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 115
Score = 29.7 bits (66), Expect = 0.085
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 144 VIRNGMIYVEQ--WKDLKVGDIVKVYNNSFFPGDLMVLS 180
V R V++ +D+ GDIV+V P D+ +LS
Sbjct: 5 VYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILS 43
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 28.2 bits (63), Expect = 0.24
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 134 DGEINH-----RSVDVIRNGM---IYVEQWKDLKVGDIVKVY 167
+GEI+ V + G + ++ + D+K GD+++ Y
Sbjct: 50 EGEIDSLKRYKDDVREVAQGYECGLTIKNFNDIKEGDVIEAY 91
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 28.7 bits (64), Expect = 0.38
Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 43 HRVIN-----INAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQI 97
+R+++ I S +++ K + +L F R +N++F + + + +
Sbjct: 171 YRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIG-NFPDRVTNMYFNYAVVAKAL 229
Query: 98 PDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLAD 134
+ P + L+ + + + +I + + +
Sbjct: 230 WKIQPYLPEFSFCDLVNKEIKNKMDNVISQLDTKIFN 266
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 28.4 bits (63), Expect = 0.57
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 87 FFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH---LA------DGEI 137
+F+ + + D + P++ I+ I+E++ LA D +
Sbjct: 373 YFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDK 432
Query: 138 NHRSVDVIRNGMIYV 152
+ ++ G ++V
Sbjct: 433 ANYLSQALQAGTVWV 447
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 28.1 bits (62), Expect = 0.60
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 87 FFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH---LA------DGEI 137
+F+ +L D + P++ ++ +E+++ LA D
Sbjct: 380 YFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISR 439
Query: 138 NHRSVDVIRNGMIYV 152
HR + G Y+
Sbjct: 440 AHRVAANLEAGTCYI 454
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 27.5 bits (60), Expect = 1.1
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 87 FFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH---LA------DGEI 137
+F+ + ++P + + P++ ++ V E +E L E
Sbjct: 397 YFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREH 456
Query: 138 NHRSVDVIRNGMIYV 152
+ G +Y
Sbjct: 457 LEWARREFHVGNLYF 471
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 117
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 77 FEQFRRYSNIFFLFIALLQQIPDV-SPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLAD 134
++RYS + L L + + + E+I++ + L
Sbjct: 29 KRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLER 87
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
{Sphingomonas sp. [TaxId: 28214]}
Length = 492
Score = 26.5 bits (57), Expect = 2.3
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 151 YVEQWKDLKVGDIVKVYNNSF 171
Y Q K + ++++ ++
Sbjct: 466 YQRQLKLRGLYQVLQMMQQAY 486
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 25.0 bits (54), Expect = 3.3
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 46 ININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSP 102
++I + + + + Y ++ + FRRY+ L+ +L +Q P ++
Sbjct: 7 VSIPSSDEHREKKKRFTV--YKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMAL 61
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 24.2 bits (53), Expect = 4.2
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 114 LIMVVSGIKEIIEDIKRHLADGEINHRSVDVIR 146
L+++V G + IE I++ ++ V+V++
Sbjct: 47 LVIMVKGDDKTIEQIEKQA------YKLVEVVK 73
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1,
Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 24.4 bits (53), Expect = 7.0
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 118 VSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168
+ G I ++ D + V N + + LKVG +++Y+
Sbjct: 55 LEGDLSHIHRLQNLTID-------ILVYDNHVHVA---RSLKVGSFLRIYS 95
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 24.3 bits (52), Expect = 7.5
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 80 FRRYSNIFFLFIALLQQIPDVS-PTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132
+RR++ I+ L + P + +IP + + E+ + L
Sbjct: 40 YRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTL 93
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 94
Score = 23.7 bits (51), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 152 VEQWKDLKVGDIVK 165
VE KDLK G +++
Sbjct: 10 VESLKDLKPGMVLE 23
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 23.4 bits (51), Expect = 8.6
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 114 LIMVVSGIKEIIEDIKRHLADGEINHRSVDVIR 146
+ +V +G EI+E I + L ++ ++V++
Sbjct: 46 MTLVTNGPDEIVEQITKQL------NKLIEVVK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.411
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,345
Number of extensions: 32425
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 21
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)