BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5838
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
SWF N K ++E+++ + + NT L ++N+ SD G Y+C+ N
Sbjct: 37 SWFRNGKLIEENEK-YILKGSNTE--------------LTVRNIINSDGGPYVCRATNKA 81
Query: 148 PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE-DGANLS 206
+Q +LQV V P II T E VTL C A+G P P + W+R DG +
Sbjct: 82 GEDEKQAFLQVFVQPHIIQLKNET---TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFT 138
Query: 207 YNGDTEL 213
GD L
Sbjct: 139 -EGDKSL 144
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
P+I S + +T +C+A G PEP + W R
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 40
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
VTV +G+DA L C +G G ++G QVAW RVD ++L
Sbjct: 9 VTVVLGQDAKLPCF---YRGDSGEQVG-QVAWARVDAGEGAQ----------ELALL--- 51
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 146
H + L++ E + PR L + + ++N ++D G Y C+V+T
Sbjct: 52 HSKYGLHVSPAYEG-----RVEQPPPPRNPLDGS------VLLRNAVQADEGEYECRVST 100
Query: 147 DPMRSRQG--YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
P S Q L+V+VPP + + L + + +C A+G P P V W E
Sbjct: 101 FPAGSFQARLRLRVLVPP-LPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE 155
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L ++ V+ +D G Y C V+ S LQV P S + +R VT+ C
Sbjct: 74 LRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCS 133
Query: 187 A-QGYPEPYVMWRREDGANLSYN 208
+ QGYPE V W+ G L+ N
Sbjct: 134 SYQGYPEAEVFWKDGQGVPLTGN 156
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 105 YMCQVNT--NPRISLTYN-------DHR------SWFLNIKNVQESDRGWYMCQVNTDPM 149
+MC V + P IS T N D R L I +V++SD G Y C N
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 150 RSRQ--GYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203
+ + G LQV + P I + ++ E L C G P+P V W + D A
Sbjct: 87 GAVESCGALQVKMKPKITRPPINVKII--EGLKAVLPCTTMGNPKPSVSWIKGDSA 140
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACV-VDNLKGFKGLRIGWQVAWVRVDTQT 65
E ++ + P P NV + G A+L C + N K V+W++ D+
Sbjct: 90 ESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP--------SVSWIKGDS-- 139
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ +N RI++ S L I NVQ+ D G Y C
Sbjct: 140 -------ALRENSRIAVL----ESGSLRIHNVQKEDAGQYRC 170
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 126 FLNIKNVQESDRGWYMCQ---VNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT 182
+L I+ ++++D G Y C+ + + + + V VPP++ + + + +VT
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT 215
Query: 183 LNCKAQGYPEPYVMWRRE 200
L C A G+PEP + W ++
Sbjct: 216 LVCDADGFPEPTMSWTKD 233
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173
RIS+ +ND S L I N D G Y C V + + + V + ++ K+ T
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ 110
Query: 174 VVREQANVTLNCKAQGYPEPYVMWRRE 200
+E + + C P ++W+ +
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKHK 137
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 79 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRG 138
RIS+ +ND S L I N D G Y C V +N+K Q+
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED------GTQSEATVNVKIFQK---- 100
Query: 139 WYMCQVNTDPMRSRQGYLQVVV-------PPSIIDKDTSTDLVVRE 177
M + P ++G V+V PP+II K D+++++
Sbjct: 101 -LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P II+ TDLVV++ TLNCK +G PEP + W + DG +S N
Sbjct: 10 PRIIEH--PTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTN 53
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P II+ TDLVV++ TLNCK +G PEP + W + DG +S N
Sbjct: 10 PRIIEH--PTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTN 53
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 52/234 (22%)
Query: 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNV 73
L P FA + +V T+G C ++ G + L++ W ++ D S HNV
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRIN---GSEPLQVSWYKDGELLKDDANLQTSFIHNV 156
Query: 74 IT------------------QNP------RISLTYNDHR-SWFLNIK----NVQESDRGW 104
T NP LT ++H F ++K ++ + G
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGT 216
Query: 105 YMCQVNTNPRISLTY-NDHR---------------SWFLNIKNVQESDRGWYMCQV-NTD 147
+ C V I +T+ D+R + L + V + D G Y C N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 148 PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
S L V PP I K +V++ + CK G PE V+W +++
Sbjct: 277 GKDSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P+F EP+ +V +G L C VD G +RI W H +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVD---GTPEIRIAWYK-------------EHTKLRSA 49
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
P + + ++ + + I V SD G Y C+
Sbjct: 50 PAYKMQFKNNVASLV-INKVDHSDVGEYTCKAE 81
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 97 VQESDRGWYMCQVNTNPRISLT-YNDH---------RSWF------LNIKNVQESDRGWY 140
V++ + Y C++ +P I + Y D R F L + N+ D G Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 141 MCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
C+ N S L+V PP K + + + A+V L C+ QG P V W +
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK 420
Query: 200 E 200
+
Sbjct: 421 D 421
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
PP I+ + + E +TL CK G PE + W +E
Sbjct: 5 PPYFIEPLEHVEAAIGEP--ITLQCKVDGTPEIRIAWYKE 42
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 109 VNTNPRISLT-YNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV-VVPPSIID 166
VN NP +T +N L K D G Y C+V+ + ++ L++ VV +
Sbjct: 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYE 312
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ +VV++ +VT+ CK G P P V+W
Sbjct: 313 QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 115 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY---LQVVVPPSIIDKDTST 171
I+ + R L I+ V+ S G + C + Q + L V VPP I + T
Sbjct: 667 ITTSRVGRRGSVLTIEAVEASHAGNFTCHARN--LAGHQQFTTPLNVYVPPRWILE--PT 722
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
D + ++ + CKA G+P+P V W++ G
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 105 YMCQVNTNPRISLTYND------HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV 158
+ CQ NP ++++ H L I++V++ D+G Y C V D S + ++
Sbjct: 363 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRND-RESAEASAEL 421
Query: 159 VV-----PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
+ PP I + + + +V L C A G P P + W DG ++ N
Sbjct: 422 KLGGRFDPPVI--RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANN 473
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 89 SWFLNIKNVQESDR---GWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 145
SW L+ K + +DR G Y +T N +LNI +V +D G Y C
Sbjct: 462 SWELDGKKIANNDRYQVGQY-----------VTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 146 TD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203
+ + L V P I + +V E VT C GYP ++W R++ A
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKA-IVAGETLIVT--CPVAGYPIDSIVWERDNRA 566
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 183 LNCKAQGYPEPYVMWRREDG 202
+ CKA G P P ++W R DG
Sbjct: 59 IECKASGNPMPEIIWIRSDG 78
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 104 WYMCQVNTNPRISLTYND---HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159
WY T + ++ ND S L IK+ D G Y+C VN S + L V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 160 VPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P S ID T T R C+ G P V W + DG + ++
Sbjct: 342 APLSAKIDPPTQTVDFGRP---AVFTCQYTGNPIKTVSWMK-DGKAIGHS 387
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSR--QGYLQVVVPPSIIDKDTSTDLVVREQ------ 178
L I NV+ SD+G Y C V++ + ++ ++ P K D+VV+ +
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 179 -ANVTLNCKAQGYPEPYVMWRR 199
NVTL C A G P P + WR+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK 149
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV---------NTNP 113
T I I +V ++ ++SL D R + +IK +D Q+ N P
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP 237
Query: 114 RIS---LTYNDHRSWF-----LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSI 164
+I L + W L+I+NV D G Y C+ N + QG + + P
Sbjct: 238 QIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDW 297
Query: 165 IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+D T T+ + +++ +C A G P P V W R DG L+ E+
Sbjct: 298 LDVITDTEADI--GSDLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEV 343
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 134 ESDRGWYMCQVNTDPMRSRQGYLQVVV----PPSIIDKDTSTDLVVREQANVTLNCKAQG 189
+SD G Y C+ + R + ++V PP+I S + +T +C+A G
Sbjct: 66 KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124
Query: 190 YPEPYVMWRR 199
PEP + W R
Sbjct: 125 SPEPAISWFR 134
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
SWF N K ++E+++ + + NT L ++N+ SD G Y+C+ N
Sbjct: 131 SWFRNGKLIEENEK-YILKGSNTE--------------LTVRNIINSDGGPYVCRATNKA 175
Query: 148 PMRSRQGYLQVVV 160
+Q +LQV V
Sbjct: 176 GEDEKQAFLQVFV 188
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 134 ESDRGWYMCQVNTDP---MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190
+SD G Y C+ + + R + V VPP+I S + +T +C+A G
Sbjct: 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 221
Query: 191 PEPYVMWRR 199
PEP + W R
Sbjct: 222 PEPAISWFR 230
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
SWF N K ++E+++ + + NT L ++N+ SD G Y+C+ N
Sbjct: 227 SWFRNGKLIEENEK-YILKGSNTE--------------LTVRNIINSDGGPYVCRATNKA 271
Query: 148 PMRSRQGYLQVVV 160
+Q +LQV V
Sbjct: 272 GEDEKQAFLQVFV 284
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L I NV SD G Y+C + V + + + D D+ + + L C+
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA---LVELKVAALGSDLHVDVKGYKDGGIHLECR 141
Query: 187 AQG-YPEPYVMWRREDGANL 205
+ G YP+P + W G N+
Sbjct: 142 STGWYPQPQIQWSNNKGENI 161
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L I NV SD G Y+C + V + + + D D+ + + L C+
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA---LVELKVAALGSDLHVDVKGYKDGGIHLECR 141
Query: 187 AQG-YPEPYVMWRREDGANL 205
+ G YP+P + W G N+
Sbjct: 142 STGWYPQPQIQWSNNKGENI 161
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 120 NDHRSWFLNIKNVQESDRGWYMCQV--NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVRE 177
H FL++K+V+ SD G Y CQV + S+ +L V P + DL V
Sbjct: 55 EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPP 112
Query: 178 QANVTLNCKAQGYPEP--YVMWR 198
A L+C+A G PEP V WR
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWR 135
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 173 LVVREQANVTLNCKAQGYPEPYVMWRREDGA 203
L V + V LNC +G EP + W + DGA
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVK-DGA 41
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
Q PP I++ +DL+V + TLNCKA+G P P + W
Sbjct: 5 QEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
PP I++ +DL+V + TLNCKA+G P P + W
Sbjct: 9 PPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 110 NTNPRISLTYNDHRSWF----LNIKNVQESDRGWYMCQV--NTDPMRSRQGYLQVVVPPS 163
+T ++ L ++ W L I ++Q SD G Y C V S+ GY+ + P
Sbjct: 49 STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPY 108
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+++ D V L+C+AQG PEP + +D L+
Sbjct: 109 FLEE--PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149
>pdb|4GJT|B Chain B, Complex Structure Of Nectin-4 Bound To Mv-H
pdb|4GJT|C Chain C, Complex Structure Of Nectin-4 Bound To Mv-H
Length = 123
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD----TQTILSIHHNVITQNPRISL 82
VTV +G+DA L C +G G ++G QVAW RVD Q + +H +S
Sbjct: 10 VTVVLGQDAKLPCF---YRGDSGEQVG-QVAWARVDAGEGAQELALLHSKYGLH---VSP 62
Query: 83 TYNDH----------RSWFLNIKNVQESDRGWYMCQVNTNPRISL 117
Y + ++N ++D G Y C+V+T P S
Sbjct: 63 AYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSF 107
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L I NV SD G Y+C + V + + + D ++ E + L C+
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKA---LVELKVAALGSDLHIEVKGYEDGGIHLECR 141
Query: 187 AQG-YPEPYVMWRREDGANL 205
+ G YP+P + W G N+
Sbjct: 142 STGWYPQPQIKWSDTKGENI 161
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 144 VNTDPMRSRQGYLQVVV--PPSIIDKDTST--DLVVREQANVTLNCKAQGYPEPYVMWRR 199
+N + + + +L+ V P + T T D+ V E + +CK +GYP+P VMW +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 200 ED 201
+D
Sbjct: 78 DD 79
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 156 LQVVV--PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
+QV+V PPS+ + ++ + +VTL C A G+PEP + W ++
Sbjct: 4 IQVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKD 50
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L I NV E D G Y C + ++ M S + + V V + D +L++ + L C+
Sbjct: 277 LRITNVSEEDSGEYFC-LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 187 AQGYPEPYVMW 197
A G P+P V W
Sbjct: 336 ANGNPKPTVQW 346
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
P I K ++ D +V + N+ + C+A+G P P W R
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR 53
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 64 QTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR 123
Q+++ + + T IS SWF R + +T P + ++++D R
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWF----------RDGQVISTSTLPGVQISFSDGR 62
Query: 124 SWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV---VVPPSIIDKDTSTDLVVREQA 179
+ L I V +++ G Y + N + L V PP+ + + S + VR+ +
Sbjct: 63 AK-LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS--MTVRQGS 119
Query: 180 NVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
V L + G P P V + R DGA + + D ++
Sbjct: 120 QVRLQVRVTGIPTPVVKFYR-DGAEIQSSLDFQI 152
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
K+ +L VR Q+N TL CK G+P+P V W R+
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ 41
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 64 QTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR 123
Q+++ + + T IS SWF R + +T P + ++++D R
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWF----------RDGQVISTSTLPGVQISFSDGR 62
Query: 124 SWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV---VVPPSIIDKDTSTDLVVREQA 179
+ L I V +++ G Y + N + L V PP+ + + S + VR+ +
Sbjct: 63 AK-LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS--MTVRQGS 119
Query: 180 NVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
V L + G P P V + R DGA + + D ++
Sbjct: 120 QVRLQVRVTGIPTPVVKFYR-DGAEIQSSLDFQI 152
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
K+ +L VR Q+N TL CK G+P+P V W R+
Sbjct: 6 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ 39
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 144 VNTDPMRSRQGYLQVVV--PPSIIDKDTST--DLVVREQANVTLNCKAQGYPEPYVMWRR 199
+N + + + +L+ V P + T T D+ V E + +CK +GYP+P VMW +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 200 ED 201
+D
Sbjct: 78 DD 79
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
K+ +L VR Q+N TL CK G+P+P V W R+
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ 41
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173
RIS+ +ND S L I N D G Y C V + + + V + ++ K+ T
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ 110
Query: 174 VVREQANVTLNCKAQGYPEPYVMWRRE 200
+E + + C P ++W+ +
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTIIWKHK 137
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 79 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRG 138
RIS+ +ND S L I N D G Y C V +N+K Q+
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED------GTQSEATVNVKIFQK---- 100
Query: 139 WYMCQVNTDPMRSRQGYLQVVV-------PPSIIDKDTSTDLVVRE 177
M + P ++G V+V PP+II K D+++++
Sbjct: 101 -LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK 145
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVR--EQANVTLN 184
L I NV SD G Y+C Y + +V + ++ + V+ E + L
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDF-----YEKALVELKVAALGSNLHVEVKGYEDGGIHLE 139
Query: 185 CKAQG-YPEPYVMWRREDGANL 205
C++ G YP+P + W G N+
Sbjct: 140 CRSTGWYPQPQIQWSNAKGENI 161
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 100 SDRGWYMCQVNTNPRISLTY-NDHR---------------SWFLNIKNVQESDRGWYMCQ 143
+ G + C V I +T+ D+R + L + V + D G Y C
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 144 V-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
N S L V PP I K +V++ + CK G PE V+W +++
Sbjct: 80 ASNVAGKDSCSAQLGVQAPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 137
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 97 VQESDRGWYMCQVNTNPRISLT-YNDH---------RSWF------LNIKNVQESDRGWY 140
V++ + Y C++ +P I + Y D R F L + N+ D G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 141 MCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
C+ N S L+V PP K + + + A+V L C+ QG P V W +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK 228
Query: 200 E 200
+
Sbjct: 229 D 229
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 127 LNIKNVQESDRGWYMCQVN-TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
L I NV + D G Y C V + S L V+VPP ++ ++L E ++ C
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFEC 334
Query: 186 KAQGYPEPYVMWRR 199
G P P V W +
Sbjct: 335 AVSGKPVPTVNWMK 348
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 124 SWFLNIKNVQESDRGWYMCQVNTDPMRSRQG---YLQVVVPPSIIDK----DTSTDLVVR 176
S L I +Q D G Y C +P +R G ++++ P + + ++++
Sbjct: 176 SGALQISRLQPGDSGVYRCSAR-NPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 177 EQANVTLNCKAQGYPEPYVMWRRED 201
E + L C GYP P W R +
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGE 259
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 99 ESDRGWYMCQVNTNPRI-SLTYNDHRSWFLN----IKNVQES-----DRGWYMCQV---N 145
ESDRG + + + I +L +D + N I+N+ S D G Y C+ +
Sbjct: 46 ESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGD 105
Query: 146 TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
+ + SR + V P + + S + + V L C+ G P P + W++
Sbjct: 106 SGSIISRTAKVMVAGPLRFLSQTESITAFMGD--TVLLKCEVIGDPMPTIHWQK 157
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVVPPSIID--KDTSTDLVVREQANVTL 183
L I +V D G Y C+ R + QG + V P + DT D+ +N+
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADI----GSNLRW 313
Query: 184 NCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
C A G P P V W R +G L+ E+L
Sbjct: 314 GCAAAGKPRPTVRWLR-NGEPLASQNRVEVLA 344
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 127 LNIKNVQESDRGWYMC------QVNTDPMRSRQGYLQVVV------PPSIIDK-DTSTDL 173
L I SD G Y C +T + S+ L + PSI + T
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYA 218
Query: 174 VVREQANVTLNCKAQGYPEPYVMWRREDGA 203
+V +Q VTL C A G P P + WR+ DG+
Sbjct: 219 LVGQQ--VTLECFAFGNPVPRIKWRKVDGS 246
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS----IIDKDT 169
RI H+ W L +++V SDRG Y C V RQ Y V+ S I+
Sbjct: 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 228
Query: 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
+ ++V +CK +P++ W + N S G
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 100 SDRGWYMCQVNTNPRISLTY-NDHR---------------SWFLNIKNVQESDRGWYMCQ 143
+ G + C V I +T+ D+R + L + V + D G Y C
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 144 V-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
N S L V PP I K +V++ + CK G PE V+W +++
Sbjct: 80 ASNVAGKDSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 137
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 97 VQESDRGWYMCQVNTNPRISLT-YNDH---------RSWF------LNIKNVQESDRGWY 140
V++ + Y C++ +P I + Y D R F L + N+ D G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 141 MCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
C+ N S L+V PP K + + + A+V L C+ QG P V W +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK 228
Query: 200 E 200
+
Sbjct: 229 D 229
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPS 163
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V PS
Sbjct: 72 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPS 124
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 72 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 111
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDT-STDLVVREQANVTLNC 185
L I +V+ D G Y C ++ ++ ++V P + I++ D V E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHE---LTC 138
Query: 186 KAQGYPEPYVMWRREDGANLS 206
+A+GYP+ V+W D LS
Sbjct: 139 QAEGYPKAEVIWTSSDHQVLS 159
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDT-STDLVVREQANVTLNC 185
L I +V+ D G Y C ++ ++ ++V P + I++ D V E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHE---LTC 138
Query: 186 KAQGYPEPYVMWRREDGANLS 206
+A+GYP+ V+W D LS
Sbjct: 139 QAEGYPKAEVIWTSSDHQVLS 159
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPS 163
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V PS
Sbjct: 70 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPS 122
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 70 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 109
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDT-STDLVVREQANVTLNC 185
L I +V+ D G Y C ++ ++ ++V P + I++ D V E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHE---LTC 138
Query: 186 KAQGYPEPYVMWRREDGANLS 206
+A+GYP+ V+W D LS
Sbjct: 139 QAEGYPKAEVIWTSSDHQVLS 159
>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2
Extracellular Fragment D1-D2
Length = 225
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)
Query: 55 QVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES-DRGWYMCQVNTNP 113
QV W R+D + + H S+ ++ N Q S DR + V P
Sbjct: 35 QVTWQRLDGTVVAAFHP-----------------SFGVDFPNSQFSKDR---LSFVRARP 74
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG--YLQVVVPPSIIDKDTST 171
T D R L + ++ D G Y C+ TDP +R+G +L+V+ P + +
Sbjct: 75 E---TNADLRDATLAFRGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE--NHAEAQ 129
Query: 172 DLVVREQANVTLNC-KAQGYPEPYVMW 197
++ + Q+ C G P + W
Sbjct: 130 EVTIGPQSVAVARCVSTGGRPPARITW 156
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS----IIDKDT 169
RI H+ W L +++V SDRG Y C V RQ Y V+ S I+
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
+ ++V +CK +P++ W + N S G
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 34/114 (29%)
Query: 118 TYNDHRSWF------LNIKNVQESDRGWYMCQV-------------------NTDPMRSR 152
+Y D+R + L I V++SD G Y C V N M
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY 203
Query: 153 QGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+ ++V P ++ + +T V L C A G P P ++WRR DG ++
Sbjct: 204 EPKIEVQFPETVPAEKGTT---------VKLECFALGNPVPTILWRRADGKPIA 248
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 122 HRS-WFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
H+S L I N Q+ D G Y C N+ +G L P+ + D+ V +
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ--IINDIHVAMEE 311
Query: 180 NVTLNCKAQGYPEPYVMWRR 199
+V CKA G P+P W +
Sbjct: 312 SVFWECKANGRPKPTYRWLK 331
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 177 EQANVTLNCKAQGYPEPYVMWR 198
E+ V L+C+ +G P+P++ W+
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWK 43
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 34/114 (29%)
Query: 118 TYNDHRSWF------LNIKNVQESDRGWYMCQV-------------------NTDPMRSR 152
+Y D+R + L I V++SD G Y C V N M
Sbjct: 143 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY 202
Query: 153 QGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+ ++V P ++ + +T V L C A G P P ++WRR DG ++
Sbjct: 203 EPKIEVQFPETVPAEKGTT---------VKLECFALGNPVPTILWRRADGKPIA 247
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 122 HRS-WFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
H+S L I N Q+ D G Y C N+ +G L P+ + D+ V +
Sbjct: 253 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ--IINDIHVAMEE 310
Query: 180 NVTLNCKAQGYPEPYVMWRR 199
+V CKA G P+P W +
Sbjct: 311 SVFWECKANGRPKPTYRWLK 330
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 177 EQANVTLNCKAQGYPEPYVMWR 198
E+ V L+C+ +G P+P++ W+
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWK 42
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT- 75
+P P + V VG L+ CVV + R+ W + + D + +++ ++
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 76 -----QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
QN + H L +++VQ++D G Y C++
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEI 103
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVA-WVRVDTQTILSIHHNVITQN------- 77
++ V VG + C + + + + ++ W + + +T+LS N+ +
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 78 -PRISLTYNDHRS-WFLNIKNVQESDRGWYMCQV 109
R+ LT + R+ + ++ V+ESD+G Y C +
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSI 220
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
+I +VQ D G Y C V + YL V V S + DT L V V L C
Sbjct: 67 LFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYMRIDTRI-LEVPGTGEVQLTC 124
Query: 186 KAQGYPEPYVMWR 198
+A+GYP V W+
Sbjct: 125 QARGYPLAEVSWQ 137
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
+I +VQ D G Y C V + YL V V S + DT L V V L C
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYMRIDTRI-LEVPGTGEVQLTC 125
Query: 186 KAQGYPEPYVMWR 198
+A+GYP V W+
Sbjct: 126 QARGYPLAEVSWQ 138
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 119 YNDHRS---WFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVVPPSIIDKDTSTDLV 174
++ HRS +FL + S G Y+C++ ++Q +L VV P ++ +
Sbjct: 58 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQF- 116
Query: 175 VREQANVTLNCKAQGYPEPYVMWRREDG 202
+ + +T+ C +P P+V W +G
Sbjct: 117 -PDFSVLTVTCTVNAFPHPHVQWLMPEG 143
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPS 163
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ L V+V PS
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 110
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 119 YNDHRS---WFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVVPPSII---DKDTST 171
++ HRS +FL + S G Y+C++ ++Q +L VV P ++ ++
Sbjct: 60 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFP 119
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
D V +T+ C +P P+V W +G
Sbjct: 120 DFSV-----LTVTCTVNAFPHPHVQWLMPEG 145
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPS 163
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ L V+V PS
Sbjct: 73 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 125
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 73 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 112
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 33/159 (20%)
Query: 46 GFKGLRIGWQVAWV-RVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGW 104
GF + +G Q+ V R T T+L + NP +T WF + V S
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLC----AASGNPDPEIT------WFKDFLPVDPS---- 152
Query: 105 YMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG-----YLQVV 159
+N RI RS L I++ +E+D+G Y C V T+ R Y++V
Sbjct: 153 -----ASNGRI----KQLRSGALQIESSEETDQGKYEC-VATNSAGVRYSSPANLYVRVQ 202
Query: 160 -VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
V P S +++ NV + C A G P PYV W
Sbjct: 203 NVAPRFSILPMSHEIM--PGGNVNITCVAVGSPMPYVKW 239
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 119 YNDHRS---WFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVVPPSII---DKDTST 171
++ HRS +FL + S G Y+C++ ++Q +L VV P ++ ++
Sbjct: 58 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFP 117
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
D V +T+ C +P P+V W +G
Sbjct: 118 DFSV-----LTVTCTVNAFPHPHVQWLMPEG 143
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 136 DRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
D G Y C + ++V P I S + E + + CK+ GYP P
Sbjct: 67 DSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENK--NEGQDAMMYCKSVGYPHPEW 124
Query: 196 MWRREDGA 203
MWR+++
Sbjct: 125 MWRKKENG 132
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQAN 180
H S L+IK+V+ SD G Y C+ + + YL + P I T + + N
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQT---IYYSWEGN 116
Query: 181 -VTLNCKAQGYPEPYVMWRRE 200
+ ++C + P + WRR+
Sbjct: 117 PINISCDVKSNPPASIHWRRD 137
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 177 EQANVTLNCKAQGYPEPYVMWRRE-DGANLSYNGDTEL 213
E VTL C A+G P P + W+R DG + GD L
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFT-EGDKSL 50
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS----IIDKDTSTDLVVRE 177
+ +W + + +V SD+G Y C V + Y VV S I+ + V
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 129
Query: 178 QANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+NV CK P+P++ W + N S G L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNL 165
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQAN 180
H S L+IK+V+ SD G Y C+ + + YL + P I T + + N
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQT---IYYSWEGN 116
Query: 181 -VTLNCKAQGYPEPYVMWRRE 200
+ ++C + P + WRR+
Sbjct: 117 PINISCDVKSNPPASIHWRRD 137
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 177 EQANVTLNCKAQGYPEPYVMWRRE-DGANLSYNGDTEL 213
E VTL C A+G P P + W+R DG + GD L
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFT-EGDKSL 50
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS----IIDKDTSTDLVVRE 177
+ +W + + +V SD+G Y C V + Y VV S I+ + V
Sbjct: 71 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 130
Query: 178 QANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+NV CK P+P++ W + N S G L
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNL 166
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS----IIDKDTSTDLVVRE 177
+ +W + + +V SD+G Y C V + Y VV S I+ + V
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 129
Query: 178 QANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+NV CK P+P++ W + N S G L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNL 165
>pdb|3CSP|A Chain A, Crystal Structure Of The Dm2 Mutant Of Myelin
Oligodendrocyte Glycoprotein
Length = 139
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+ VG +A L C + K G+ +G W R ++ ++ N Q+ + Y
Sbjct: 16 IRALVGDEAELPCRISPGKNATGMEVG----WYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 87 HRSWF----------LNIKNVQESDRGWYMC 107
L I+NV+ SD G Y C
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
>pdb|2WBW|B Chain B, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
Length = 128
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 78 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 117
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP 148
R+ T ND +S +N+ N+Q SD G Y C+V P
Sbjct: 78 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAP 114
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 70 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 109
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV 160
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V
Sbjct: 70 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 119
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+ VG +A L C + K G+ +G W R ++ ++ N Q+ + Y
Sbjct: 16 IRALVGDEAELPCRISPGKNATGMEVG----WYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 87 HRSWF----------LNIKNVQESDRGWYMC 107
L I+NV+ SD G Y C
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
>pdb|2W9L|A Chain A, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|B Chain B, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|G Chain G, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|J Chain J, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|K Chain K, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|O Chain O, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|P Chain P, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|T Chain T, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|V Chain V, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|X Chain X, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Y Chain Y, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Z Chain Z, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 124
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 75 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 114
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV 160
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V
Sbjct: 75 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 78 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 117
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV 160
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V
Sbjct: 78 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 127
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTNPRIS 116
R+ T ND +S +N+ N+Q SD G Y C+V P ++
Sbjct: 76 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA 115
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 114 RISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV 160
R+ T ND +S +N+ N+Q SD G Y C+V P + +++ +L V+V
Sbjct: 76 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>pdb|1PY9|A Chain A, The Crystal Structure Of An Autoantigen In Multiple
Sclerosis
Length = 116
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+ VG +A L C + K G+ +G W R ++ ++ N Q+ + Y
Sbjct: 11 IRALVGDEAELPCRISPGKNATGMEVG----WYRSPFSRVVHLYRNGKDQDAEQAPEYRG 66
Query: 87 HRSWF----------LNIKNVQESDRGWYMC 107
L I+NV+ SD G Y C
Sbjct: 67 RTELLKETISEGKVTLRIQNVRFSDEGGYTC 97
>pdb|2YZ1|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
pdb|2YZ1|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
Length = 120
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +V+V G +L C + +L L +G + W R Q+ L I+ PR++
Sbjct: 12 QPEKSVSVAAGDSTVLNCTLTSL-----LPVG-PIKWYRGVGQSRLLIYSFTGEHFPRVT 65
Query: 82 ----LTYNDHRSWFLNIKNVQESDRGWYMC 107
T ++ + + I NV D G Y C
Sbjct: 66 NVSDATKRNNMDFSIRISNVTPEDAGTYYC 95
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162
RI L +++ +V SD G Y C + T P+++ + YL V+ P
Sbjct: 60 RIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYN 85
NVTV G A+L C VD + W QT+ + N RI L
Sbjct: 15 NVTVVEGGTAILTCRVDQ-------NDNTSLQWSNPAQQTLYFDDKKALRDN-RIELVRA 66
Query: 86 DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+++ +V SD G Y C + T P
Sbjct: 67 SWHELSISVSDVSLSDEGQYTCSLFTMP 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV-----VPPSIIDKDTSTDLVVREQAN 180
+ +KN D+G Y+C + R ++ + V P+I + + E +
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE--S 683
Query: 181 VTLNCKAQGYPEPYVMWRRED 201
+ ++C A G P P +MW +++
Sbjct: 684 IEVSCTASGNPPPQIMWFKDN 704
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQAN--VTLN 184
L I V SD+G Y C ++ M + V + + + +V V +
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 185 CKAQGYPEPYVMWRR 199
K GYP P + W +
Sbjct: 352 AKYLGYPPPEIKWYK 366
>pdb|2UV3|A Chain A, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2UV3|B Chain B, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2JJS|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
Length = 126
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +V+V G A+L C V +L + +G + W R I++ PR++
Sbjct: 8 QPDKSVSVAAGESAILHCTVTSL-----IPVG-PIQWFRGAGPARELIYNQKEGHFPRVT 61
Query: 82 L----TYNDHRSWFLNIKNVQESDRGWYMC 107
T ++ + ++I N+ +D G Y C
Sbjct: 62 TVSESTKRENMDFSISISNITPADAGTYYC 91
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +V+V G A L C + +L + +G + W R I++ PR++
Sbjct: 13 QPEKSVSVAAGESATLRCAMTSL-----IPVG-PIMWFRGAGAGRELIYNQKEGHFPRVT 66
Query: 82 ----LTYNDHRSWFLNIKNVQESDRGWYMC 107
LT ++ + ++I N+ +D G Y C
Sbjct: 67 TVSELTKRNNLDFSISISNITPADAGTYYC 96
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 31/145 (21%)
Query: 85 NDHRSWFLNIKNVQESDRGW---YMCQVNTNPRISLT-----------------YNDHRS 124
D + F+ + Q G ++CQ P+ +T ++D
Sbjct: 3 GDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAG 62
Query: 125 WFLNIKNVQ-ESDRGWYMC-------QVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVR 176
L I+ ++ + D Y C ++NT S Q+ PP D L V
Sbjct: 63 SVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQL--PPGFPSIDMGPQLKVV 120
Query: 177 EQA-NVTLNCKAQGYPEPYVMWRRE 200
E+A T+ C A G P+P + W ++
Sbjct: 121 EKARTATMLCAAGGNPDPEISWFKD 145
>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2
pdb|4FN0|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|B Chain B, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
pdb|4FN0|C Chain C, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment
D1-D2, 2nd Crystal Form
Length = 225
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 55 QVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES-DRGWYMCQVNTNP 113
QV W R+D + + H S+ ++ N Q S DR + V P
Sbjct: 35 QVTWQRLDGTVVAAFHP-----------------SFGVDFPNSQFSKDR---LSFVRARP 74
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG--YLQVVVPPSIIDKDTST 171
T D R L + ++ D G Y C+ T P +R+G +L+V+ P + +
Sbjct: 75 E---TNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE--NHAEAQ 129
Query: 172 DLVVREQANVTLNC-KAQGYPEPYVMW 197
++ + Q+ C G P + W
Sbjct: 130 EVTIGPQSVAVARCVSTGGRPPARITW 156
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN---VITQNPRI 80
IP++ G + L D L ++ ++ W+ Q IL ++N I ++
Sbjct: 10 IPDINAYTGSNVTLKIHKDPLGPYR------RITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 81 SLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
Y + + L+I NV++ D+G Y +V
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRV 92
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 37/155 (23%)
Query: 29 VTVGRD-ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--------VITQNPR 79
V GRD A CV +N G V L+I+ VITQ P
Sbjct: 73 VRAGRDDAPYECVAENGVGDA------------VSADATLTIYEGDKTPAGFPVITQGPG 120
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-----NPRISLTYNDHRSWFLNIKNVQE 134
+ H + + K + Y + T NPR SL + FL I+N +E
Sbjct: 121 TRVIEVGH-TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-----KDGFLQIENSRE 174
Query: 135 SDRGWYMC----QVNTDPMRSRQGYLQV-VVPPSI 164
D+G Y C + T+ ++ Y++V VPP+
Sbjct: 175 EDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTF 209
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
PP II K + VR + C A+G P P ++WR+
Sbjct: 8 PPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRK 44
>pdb|1T4K|B Chain B, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
pdb|1T4K|D Chain D, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
Length = 217
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 114 RISLTYNDHRSW-FLNIKNVQESDRGWYMCQVNT--DPMRS-RQGYLQVV-----VPPSI 164
R++++ + +S FLN+ ++Q D Y C +T P S QG V PPS+
Sbjct: 66 RLTISKDSSKSQVFLNMHSLQTDDSAMYYCAKHTYGGPGDSWGQGTSVTVSSASTTPPSV 125
Query: 165 IDKDTSTDLVVREQANVTLNCKAQGY-PEP 193
+ + + VTL C +GY PEP
Sbjct: 126 FPLAPGS--AAQTNSMVTLGCLVKGYFPEP 153
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +V+V G A L C + +L + +G + W R I++ PR++
Sbjct: 8 QPEKSVSVAAGESATLRCAMTSL-----IPVG-PIMWFRGAGAGRELIYNQKEGHFPRVT 61
Query: 82 ----LTYNDHRSWFLNIKNVQESDRGWYMC 107
LT ++ + ++I N+ +D G Y C
Sbjct: 62 TVSELTKRNNLDFSISISNITPADAGTYYC 91
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162
RI L + ++I NV +D G Y C + T P+R+ + + V+ P
Sbjct: 92 RIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIP 140
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDH 87
TV G +L C V + + + W QT+ + N RI L +
Sbjct: 49 TVVAGGTVVLKCQVKDHEDSS-------LQWSNPAQQTLYFGEKRALRDN-RIQLVTSTP 100
Query: 88 RSWFLNIKNVQESDRGWYMCQVNTNP 113
++I NV +D G Y C + T P
Sbjct: 101 HELSISISNVALADEGEYTCSIFTMP 126
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+ VG +A L C + K G +GW R ++ ++ N Q+ + Y
Sbjct: 16 IRALVGDEAELPCRISPGKNATGXEVGW----YRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 87 HRSWF----------LNIKNVQESDRGWYMC 107
L I+NV+ SD G Y C
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTC 102
>pdb|2JJV|A Chain A, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
pdb|2JJV|B Chain B, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
Length = 127
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +++V G A L C V +L + +G + W R I++ PR++
Sbjct: 8 QPDKSISVAAGESATLHCTVTSL-----IPVG-PIQWFRGAGPGRELIYNQKEGHFPRVT 61
Query: 82 ----LTYNDHRSWFLNIKNVQESDRGWYMC 107
LT ++ + + I N+ +D G Y C
Sbjct: 62 TVSDLTKRNNMDFSIRISNITPADAGTYYC 91
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+P +V+V G A+L C V +L + +G + W R I++ PR++
Sbjct: 8 QPDKSVSVAAGESAILHCTVTSL-----IPVG-PIQWFRGAGPARELIYNQKEGHFPRVT 61
Query: 82 L----TYNDHRSWFLNIKNVQESDRGWYMC 107
T ++ + ++I N+ +D G Y C
Sbjct: 62 TVSESTKRENMDFSISISNITPADAGTYYC 91
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 115 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR 150
I TY+ H + ++I + E D G Y C+ + DP R
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
I TY+ H + ++I + E D G Y C+ + +P
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDP 113
>pdb|3B9K|B Chain B, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|F Chain F, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 125
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRI 115
++ + + I L +D R FL+I NV+ D +Y C +P++
Sbjct: 58 LYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKM 104
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 115 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR 150
I TY+ H + ++I + E D G Y C+ + DP R
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
I TY+ H + ++I + E D G Y C+ + +P
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDP 113
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 56 VAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ W++ T+ +S NPR SL + FL I+N +E D+G Y C
Sbjct: 142 IYWIKNQTKVDMS--------NPRYSL-----KDGFLQIENSREEDQGKYEC 180
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 32/128 (25%)
Query: 29 VTVGRD-ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--------VITQNPR 79
V GRD A CV +N G V L+I+ VITQ P
Sbjct: 71 VRAGRDDAPYECVAENGVGDA------------VSADATLTIYEGDKTPAGFPVITQGPG 118
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-----NPRISLTYNDHRSWFLNIKNVQE 134
+ H + + K + Y + T NPR SL + FL I+N +E
Sbjct: 119 TRVIEVGH-TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-----KDGFLQIENSRE 172
Query: 135 SDRGWYMC 142
D+G Y C
Sbjct: 173 EDQGKYEC 180
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
PP II K + VR + C A+G P P ++WR+
Sbjct: 6 PPEIIRKPQNQG--VRVGGVASFYCAARGDPPPSIVWRK 42
>pdb|3DMM|D Chain D, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 150
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRI 115
++ + + I L +D R FL+I NV+ D +Y C +P++
Sbjct: 61 LYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKM 107
>pdb|2ATP|B Chain B, Crystal Structure Of A Cd8ab Heterodimer
pdb|2ATP|D Chain D, Crystal Structure Of A Cd8ab Heterodimer
Length = 115
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRI 115
++ + + I L +D R FL+I NV+ D +Y C +P++
Sbjct: 58 LYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKM 104
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQAN--VTLN 184
L I V SD+G Y C ++ M + V + + + +V V +
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 185 CKAQGYPEPYVMWRR 199
K GYP P + W +
Sbjct: 222 AKYLGYPPPEIKWYK 236
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQG--YLQVVVPPSIIDKDTSTDLVVREQANVTLN 184
+ + N+ SD G Y+C+ T P+ + Q + V+V P++ L+ V
Sbjct: 76 ITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAI 135
Query: 185 C-KAQGYPEPYVMWRREDG 202
C A G P ++ W + G
Sbjct: 136 CIAATGKPVAHIDWEGDLG 154
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 105 YMCQVNTNPRISLTYND------HRSWFLNIKNVQESDRGWYMCQVNTD 147
+ CQ NP ++++ H L I++V++ D+G Y C V D
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRND 375
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 183 LNCKAQGYPEPYVMWRREDG 202
+ CKA G P P ++W R DG
Sbjct: 24 IECKASGNPMPEIIWIRSDG 43
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 104 WYMCQVNTNPRISLTYND---HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159
WY T + ++ ND S L IK+ D G Y+C VN S + L V
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Query: 160 VPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P S ID T T R C+ G P V W + DG + ++
Sbjct: 306 APLSAKIDPPTQTVDFGRP---AVFTCQYTGNPIKTVSWMK-DGKAIGHS 351
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 105 YMCQVNTNPRISLTYND------HRSWFLNIKNVQESDRGWYMCQVNTD 147
+ CQ NP ++++ H L I++V++ D+G Y C V D
Sbjct: 333 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRND 381
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 183 LNCKAQGYPEPYVMWRREDG 202
+ CKA G P P ++W R DG
Sbjct: 30 IECKASGNPMPEIIWIRSDG 49
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 104 WYMCQVNTNPRISLTYND---HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159
WY T + ++ ND S L IK+ D G Y+C VN S + L V
Sbjct: 252 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 311
Query: 160 VPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P S ID T T R C+ G P V W + DG + ++
Sbjct: 312 APLSAKIDPPTQTVDFGRP---AVFTCQYTGNPIKTVSWMK-DGKAIGHS 357
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 123 RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT 182
R F + +V +D G+Y C + P S+ + +V I ++S D + +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345
Query: 183 LNCKAQGYPEPYVMW 197
+ + + YP+ W
Sbjct: 346 FSVRFKAYPQIRCTW 360
>pdb|2JJW|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Gamma
Length = 127
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 29 VTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS----LTY 84
VTVG+ A L C V +L L +G V W R I++ PR++ LT
Sbjct: 15 VTVGKTATLHCTVTSL-----LPVG-PVLWFRGVGPGRELIYNQKEGHFPRVTTVSDLTK 68
Query: 85 NDHRSWFLNIKNVQESDRGWYMC 107
++ + + I ++ +D G Y C
Sbjct: 69 RNNMDFSIRISSITPADVGTYYC 91
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 101 DRGWYMCQVNTNPRISLTYNDHRSWF---LNIKNVQESDRGWYMCQVNTDPMRSR---QG 154
D+G V N +I+ +Y D ++ + K+V D G Y C V+ + S +
Sbjct: 41 DQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV 100
Query: 155 YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRRE 200
L V+VPPS + + + +A L C Q G P W ++
Sbjct: 101 KLIVLVPPSKPTVNIPSSATIGNRA--VLTCSEQDGSPPSEYTWFKD 145
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 105 YMCQVNTNPRISLTYND------HRSWFLNIKNVQESDRGWYMCQVNTD 147
+ CQ NP ++++ H L I++V++ D+G Y C V D
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRND 378
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 183 LNCKAQGYPEPYVMWRREDG 202
+ CKA G P P ++W R DG
Sbjct: 24 IECKASGNPMPEIIWIRSDG 43
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 104 WYMCQVNTNPRISLTYND---HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159
WY T + ++ ND S L IK+ D G Y+C VN S + L V
Sbjct: 249 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 308
Query: 160 VPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P S ID T T R C+ G P V W + DG + ++
Sbjct: 309 APLSAKIDPPTQTVDFGRP---AVFTCQYTGNPIKTVSWMK-DGKAIGHS 354
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 113 PRISLTYNDHRSWFLNIKNVQESDRGWYMC--QVNTDPMRSRQGYLQVVVPPS--IIDKD 168
PR+ L+ N +R+ L + NV +D Y+C Q + RS L V+ P II
Sbjct: 511 PRLQLS-NGNRT--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPP 567
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWR 198
S+ L AN+ L+C + P P WR
Sbjct: 568 DSSYL---SGANLNLSCHSASNPSPQYSWR 594
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 123 RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT 182
R F + +V +D G+Y C + P S+ + +V I ++S D + +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345
Query: 183 LNCKAQGYPEPYVMW 197
+ + + YP+ W
Sbjct: 346 FSVRFKAYPQIRCTW 360
>pdb|3T0X|A Chain A, Fluorogen Activating Protein M8vla4(S55p) In Complex With
Dimethylindole Red
pdb|3T0X|B Chain B, Fluorogen Activating Protein M8vla4(S55p) In Complex With
Dimethylindole Red
Length = 123
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 73 VITQNPRISLTYNDHRSWFLN--IKNVQESDRGWYMCQVNTNPRISLTYNDHR 123
V+TQ+P +S T + F + NV+++ WY T P++ L YND R
Sbjct: 3 VLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKV-LIYNDDR 54
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 73 VITQNPR-ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR-------- 123
V+TQ+P +S+T D S+ ++ WY + + +PR+ + Y
Sbjct: 3 VLTQSPATLSVTPGDSVSFSCRASQSISNNLHWYQQRTHESPRLLIKYASQSISGIPSRF 62
Query: 124 -------SWFLNIKNVQESDRGWYMCQ 143
+ L+I +V+ D G Y CQ
Sbjct: 63 SGSGSGTDFTLSISSVETEDFGMYFCQ 89
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
PP+ K + D VRE +V ++ + QG P+P V W R
Sbjct: 4 APPTF--KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR 41
>pdb|3T0V|A Chain A, Unliganded Fluorogen Activating Protein M8vl
pdb|3T0W|A Chain A, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
pdb|3T0W|B Chain B, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
Length = 123
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 73 VITQNPRISLTYNDHRSWFLN--IKNVQESDRGWYMCQVNTNPRISLTYNDHR 123
V+TQ+P +S T + F + NV+++ WY T P++ L YND R
Sbjct: 3 VLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKV-LIYNDDR 54
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 87 HRSWFLNIKNVQESDR-GWYMC--QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 143
H + I+N +S + WY Q+ + + +TY D + L +K++ + D G Y C+
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA-ILYVKDITKLDDGTYRCK 76
Query: 144 VNTD 147
V D
Sbjct: 77 VVND 80
>pdb|1BQH|G Chain G, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|H Chain H, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|I Chain I, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|K Chain K, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
Length = 129
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDK 167
++N++ S + + + L + + + G+Y C V ++ + Y VVP ++ K
Sbjct: 68 KLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVM----YFSSVVP--VLQK 121
Query: 168 DTSTDLV 174
+S DLV
Sbjct: 122 VSSADLV 128
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
PP I+ + L V L CKA G P P + W +E
Sbjct: 8 PPIILQGPANQTLAV--DGTALLKCKATGDPLPVISWLKE 45
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L + +Q + G Y C+V P+++ QG +Q+ V S + + ++E + + C+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQVGMKENEDKYM-CE 141
Query: 187 AQG-YPEPY-VMWRRE 200
+ G YPE + W ++
Sbjct: 142 SSGFYPEAINITWEKQ 157
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 106 MCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWY 140
M Q NT+ RISL ++ L IK+V + D GWY
Sbjct: 55 MVQFNTD-RISLYQDNTGRVTLLIKDVNKKDAGWY 88
>pdb|2PND|A Chain A, Structure Or Murine Crig
Length = 119
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL-----SIHHN 72
P P +VT T D + C+ D L+G++ + + W V D+ TI H
Sbjct: 3 PTLKTP-ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGS-DSVTIFLRDSTGDHIQ 60
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
R+ +++ L I +Q DR Y C+V
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEV 97
>pdb|1QSE|D Chain D, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1QSF|D Chain D, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
pdb|2GJ6|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|3D39|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3H9S|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3PWP|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QFJ|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
Length = 200
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ--GYLQVVVPPSIIDKD 168
L I++ Q SD Y+C V TD Q QVVV P I + D
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDIQNPD 116
>pdb|2ZCK|H Chain H, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 230
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 170 STDLVVREQANVTLNCKAQGYPEP--YVMWRRE 200
S D +V+ A+V L+CKA GY Y+ W R+
Sbjct: 7 SGDDLVKPGASVKLSCKASGYTFTTYYINWMRQ 39
>pdb|1AO7|D Chain D, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
Length = 204
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ--GYLQVVVPPSIIDKD 168
L I++ Q SD Y+C V TD Q QVVV P I + D
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDIQNPD 116
>pdb|2WY3|A Chain A, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
pdb|2WY3|C Chain C, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
Length = 319
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 178 QANVTLNCKAQG-YPEPYVMWRREDGANLSYN 208
+ N+T+ C+A YP + R+DG +LS+N
Sbjct: 196 EGNITVTCRASSFYPRNITLTWRQDGVSLSHN 227
>pdb|2ZCH|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 229
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 170 STDLVVREQANVTLNCKAQGY--PEPYVMWRRE 200
S D +V+ A+V L+CKA GY Y+ W R+
Sbjct: 7 SGDDLVKPGASVKLSCKASGYTFTTYYINWMRQ 39
>pdb|1QRN|D Chain D, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 200
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ--GYLQVVVPPSIIDKD 168
L I++ Q SD Y+C V TD Q QVVV P I + D
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDIQNPD 116
>pdb|1JE6|A Chain A, Structure Of The Mhc Class I Homolog Micb
Length = 275
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 178 QANVTLNCKAQG-YPEPYVMWRREDGANLSYN 208
+ N+T+ C+A YP + R+DG +LS+N
Sbjct: 196 EGNITVTCRASSFYPRNITLTWRQDGVSLSHN 227
>pdb|3QH3|A Chain A, The Crystal Structure Of Tcr A6
pdb|3QH3|C Chain C, The Crystal Structure Of Tcr A6
Length = 194
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ--GYLQVVVPPSIIDKD 168
L I++ Q SD Y+C V TD Q QVVV P I + D
Sbjct: 73 LLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDIQNPD 116
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+P +PN +V VG D LL C V+ +GL Q W+ + + ++ +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEG----RGLE---QAGWILTELEQSATVMKS--GG 208
Query: 77 NPRISLTYNDHRSWFLNIKNV---QESDRGWYMCQVNTN 112
P + LT + S LN KNV E+D G V N
Sbjct: 209 LPSLGLTLANVTS-DLNRKNVTCWAENDVGRAEVSVQVN 246
>pdb|1W5R|A Chain A, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
pdb|1W5R|B Chain B, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
Length = 278
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 34 DALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
+ LL V++ L GF+ R+ +V W+R D + + HNV++
Sbjct: 77 NGLLGYVLEEL-GFEVERLSGRVVWMRADDAPLPAQTHNVLS 117
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYL 156
V D G+Y+C+VN N T+ + L++ ++ ES Q + D + + L
Sbjct: 72 VHVKDAGFYVCRVNNN----FTFEFSQWSQLDVCDIPES------FQRSVDGVSESK--L 119
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
Q+ V P TS L+ + + L C A G P P+ W + +
Sbjct: 120 QICVEP------TSQKLM--PGSTLVLQCVAVGSPIPHYQWFKNE 156
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV 160
RIS+ +ND S L I N D G Y C V + + + V +
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 79 RISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
RIS+ +ND S L I N D G Y C V
Sbjct: 51 RISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
>pdb|1W6F|A Chain A, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|B Chain B, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|C Chain C, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|D Chain D, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site
Length = 278
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 34 DALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
+ LL V++ L GF+ R+ +V W+R D + + HNV++
Sbjct: 77 NGLLGYVLEEL-GFEVERLSGRVVWMRADDAPLPAQTHNVLS 117
>pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|B Chain B, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|C Chain C, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|D Chain D, M. Smegmatis Arylamine N-Acetyl Transferase
Length = 284
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 34 DALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
+ LL V++ L GF+ R+ +V W+R D + + HNV++
Sbjct: 83 NGLLGYVLEEL-GFEVERLSGRVVWMRADDAPLPAQTHNVLS 123
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 119 YNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKD-------TST 171
+N R L I + + +D G +MC N + G V ++DK +T
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYAN-----NTFGSANVTTTLEVVDKGFINIFPMINT 321
Query: 172 DLVVREQANVTLNCKAQGYPEP 193
+ V + NV L + + +P+P
Sbjct: 322 TVFVNDGENVDLIVEYEAFPKP 343
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQA---NVTLNCKAQG-YPEPYVMWRREDGANLSYN 208
L+ VPP + V R +A N+T+ C+A G YP + R+DG +LS++
Sbjct: 178 LRRTVPPMVN--------VTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHD 226
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 119 YNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKD-------TST 171
+N R L I + + +D G +MC N + G V ++DK +T
Sbjct: 242 FNYERQATLTISSARVNDSGVFMCYAN-----NTFGSANVTTTLEVVDKGFINIFPMINT 296
Query: 172 DLVVREQANVTLNCKAQGYPEP 193
+ V + NV L + + +P+P
Sbjct: 297 TVFVNDGENVDLIVEYEAFPKP 318
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQA---NVTLNCKAQG-YPEPYVMWRREDGANLSYN 208
L+ VPP + V R +A N+T+ C+A G YP + R+DG +LS++
Sbjct: 179 LRRTVPPMVN--------VTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSLSHD 227
>pdb|2VXT|H Chain H, Crystal Structure Of Human Il-18 Complexed To Murine
Reference Antibody 125-2h Fab
pdb|2VXU|H Chain H, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
pdb|2VXU|I Chain I, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
Length = 216
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 174 VVREQANVTLNCKAQGYP--EPYVMW-RREDGANLS-------YNGDTE 212
+V+ A+V ++CKA GY + ++ W ++ G +L YNGDT
Sbjct: 11 LVKPGASVKVSCKASGYSFTDYFIYWVKQSHGKSLEWIGDIDPYNGDTS 59
>pdb|1F11|B Chain B, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|D Chain D, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 221
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 174 VVREQANVTLNCKAQGY--PEPYVMW-RREDGANLSYNGD 210
+V+ A+V ++CKA GY + Y+ W ++ G +L + GD
Sbjct: 11 LVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGD 50
>pdb|3A6B|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln32d Complexed
With White Lysozyme
Length = 107
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 73 VITQNPR-ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR-------- 123
V+TQ+P +S+T + S +D WY + + +PR+ + Y
Sbjct: 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNDLHWYQQKSHESPRLLIKYASQSISGIPSRF 62
Query: 124 -------SWFLNIKNVQESDRGWYMCQ 143
+ L+I +V+ D G Y CQ
Sbjct: 63 SGSGSGTDFTLSINSVETEDFGMYFCQ 89
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 160 VPPSIIDKDTSTDLVVREQA-NVTLNCKAQGYPEPYVMWRRE 200
+PP + D L V E+ T+ C A G P+P + W ++
Sbjct: 104 LPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 73 VITQNPR-ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR-------- 123
V+TQ+P +S+T D S ++ WY + + +PR+ + Y
Sbjct: 3 VLTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRF 62
Query: 124 -------SWFLNIKNVQESDRGWYMCQ 143
+ L+I +V+ D G Y CQ
Sbjct: 63 SGSGSGTDFTLSINSVETEDFGMYFCQ 89
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 73 VITQNPR-ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHR-------- 123
V+TQ+P +S+T D S ++ WY + + +PR+ + Y
Sbjct: 4 VLTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRF 63
Query: 124 -------SWFLNIKNVQESDRGWYMCQ 143
+ L+I +V+ D G Y CQ
Sbjct: 64 SGSGSGTDFTLSINSVETEDFGMYFCQ 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,943,967
Number of Sequences: 62578
Number of extensions: 274703
Number of successful extensions: 1731
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 361
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)