Query psy5838
Match_columns 215
No_of_seqs 119 out of 1200
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 19:19:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 7.6E-21 1.6E-25 161.5 18.1 176 13-209 327-563 (1051)
2 KOG3513|consensus 99.9 4.2E-20 9.1E-25 157.1 16.8 179 14-213 237-475 (1051)
3 KOG4221|consensus 99.8 1.4E-17 3.1E-22 142.1 16.1 171 15-208 138-372 (1381)
4 KOG4194|consensus 99.8 4.2E-18 9.2E-23 136.7 12.2 190 9-207 495-750 (873)
5 PHA02785 IL-beta-binding prote 99.8 4.9E-17 1.1E-21 127.2 16.3 155 26-206 35-265 (326)
6 KOG4222|consensus 99.6 2.8E-15 6.1E-20 127.6 11.9 169 17-205 131-357 (1281)
7 KOG4221|consensus 99.6 1.4E-14 3.1E-19 124.1 12.6 177 14-209 38-282 (1381)
8 KOG4222|consensus 99.6 2.1E-14 4.6E-19 122.4 10.7 173 13-201 27-263 (1281)
9 cd05762 Ig8_MLCK Eighth immuno 99.5 2E-13 4.4E-18 88.2 11.6 93 18-162 1-94 (98)
10 PHA02826 IL-1 receptor-like pr 99.5 3.7E-13 7.9E-18 99.7 13.3 75 126-209 99-179 (227)
11 cd05882 Ig1_Necl-1 First (N-te 99.5 8.6E-13 1.9E-17 84.5 10.7 78 24-109 4-81 (95)
12 cd05747 Ig5_Titin_like M5, fif 99.5 8.9E-13 1.9E-17 84.3 9.3 79 16-111 2-80 (92)
13 cd07701 Ig1_Necl-3 First (N-te 99.4 4.1E-12 8.9E-17 81.5 10.1 79 24-110 4-82 (95)
14 cd05737 Ig_Myomesin_like_C C-t 99.4 2.9E-12 6.3E-17 81.9 8.6 32 24-62 8-39 (92)
15 cd05865 Ig1_NCAM-1 First immun 99.4 2.9E-12 6.3E-17 82.3 8.4 37 23-66 6-43 (96)
16 cd05851 Ig3_Contactin-1 Third 99.4 4.6E-12 9.9E-17 80.2 9.0 39 17-62 1-39 (88)
17 PF07679 I-set: Immunoglobulin 99.4 3E-12 6.4E-17 81.5 8.2 76 18-110 1-76 (90)
18 KOG4194|consensus 99.4 7.4E-12 1.6E-16 101.4 12.1 136 14-165 609-802 (873)
19 cd05881 Ig1_Necl-2 First (N-te 99.4 1.4E-11 3E-16 78.5 10.8 83 24-114 4-86 (95)
20 cd05870 Ig5_NCAM-2 Fifth immun 99.4 7.7E-12 1.7E-16 80.9 9.3 38 17-62 2-39 (98)
21 cd05866 Ig1_NCAM-2 First immun 99.4 4.5E-12 9.8E-17 80.7 7.6 37 22-66 5-41 (92)
22 cd04977 Ig1_NCAM-1_like First 99.3 1.2E-11 2.6E-16 79.0 8.7 37 22-66 5-41 (92)
23 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 2.1E-11 4.6E-16 76.8 8.7 31 25-62 3-33 (86)
24 cd05891 Ig_M-protein_C C-termi 99.3 2.4E-11 5.1E-16 77.6 8.4 33 23-62 7-39 (92)
25 cd05892 Ig_Myotilin_C C-termin 99.3 1.7E-11 3.7E-16 75.0 6.9 62 35-111 1-62 (75)
26 cd05728 Ig4_Contactin-2-like F 99.3 3.4E-11 7.4E-16 75.7 8.2 36 20-62 2-37 (85)
27 cd05869 Ig5_NCAM-1 Fifth immun 99.3 5.2E-11 1.1E-15 76.9 8.9 38 17-61 2-39 (97)
28 cd05717 Ig1_Necl-1-3_like Firs 99.3 7.3E-11 1.6E-15 75.9 9.5 34 24-64 4-37 (95)
29 PHA03376 BARF1; Provisional 99.3 2E-10 4.4E-15 80.2 12.1 142 25-203 19-164 (221)
30 cd05852 Ig5_Contactin-1 Fifth 99.3 1.8E-11 3.9E-16 74.6 6.3 60 32-111 1-60 (73)
31 cd04975 Ig4_SCFR_like Fourth i 99.3 1.7E-10 3.6E-15 74.8 11.1 35 24-66 10-45 (101)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.3 7.5E-11 1.6E-15 75.0 8.9 35 21-62 4-38 (90)
33 cd05735 Ig8_DSCAM Eight immuno 99.2 1.6E-10 3.4E-15 73.2 10.1 85 32-163 1-86 (88)
34 cd05732 Ig5_NCAM-1_like Fifth 99.2 8.1E-11 1.8E-15 75.8 8.8 38 17-62 2-39 (96)
35 cd05752 Ig1_FcgammaR_like Frst 99.2 6.2E-11 1.3E-15 73.1 7.6 66 18-111 1-67 (78)
36 cd04968 Ig3_Contactin_like Thi 99.2 1.1E-10 2.5E-15 73.9 8.7 39 18-63 2-40 (88)
37 cd05745 Ig3_Peroxidasin Third 99.2 3E-11 6.4E-16 74.0 5.6 25 31-62 1-25 (74)
38 cd05893 Ig_Palladin_C C-termin 99.2 5.6E-11 1.2E-15 72.8 6.6 62 35-111 1-62 (75)
39 cd04973 Ig1_FGFR First immunog 99.2 9.7E-11 2.1E-15 72.6 7.6 66 24-111 1-66 (79)
40 cd05730 Ig3_NCAM-1_like Third 99.2 3.3E-10 7E-15 72.8 10.2 30 25-61 11-40 (95)
41 cd07693 Ig1_Robo First immunog 99.2 4.4E-10 9.6E-15 72.7 10.6 41 17-65 1-41 (100)
42 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1.2E-10 2.5E-15 74.2 7.3 31 24-62 10-40 (91)
43 cd05724 Ig2_Robo Second immuno 99.2 1.1E-10 2.5E-15 73.5 7.2 32 23-61 2-34 (86)
44 cd05848 Ig1_Contactin-5 First 99.2 1.7E-10 3.6E-15 74.0 8.0 40 18-65 2-44 (94)
45 cd07690 Ig1_CD4 First immunogl 99.2 1.6E-10 3.4E-15 73.7 7.5 29 27-62 2-30 (94)
46 cd05743 Ig_Perlecan_D2_like Im 99.2 1.5E-10 3.2E-15 71.6 7.2 63 32-111 1-63 (78)
47 cd04969 Ig5_Contactin_like Fif 99.2 1.3E-10 2.8E-15 70.9 6.3 60 32-111 1-60 (73)
48 cd05726 Ig4_Robo Fhird immunog 99.2 4.7E-10 1E-14 71.3 9.0 82 32-160 1-83 (90)
49 cd05744 Ig_Myotilin_C_like Imm 99.2 2.1E-10 4.5E-15 70.3 7.1 23 35-65 1-23 (75)
50 cd05849 Ig1_Contactin-1 First 99.1 1.9E-10 4E-15 73.5 6.5 38 18-62 2-42 (93)
51 cd05857 Ig2_FGFR Second immuno 99.1 2.7E-10 5.8E-15 71.6 7.0 29 27-62 4-32 (85)
52 cd05773 Ig8_hNephrin_like Eigh 99.1 1.9E-09 4.1E-14 71.0 11.1 100 16-162 3-108 (109)
53 cd05859 Ig4_PDGFR-alpha Fourth 99.1 9.1E-10 2E-14 71.4 9.0 33 26-66 12-44 (101)
54 cd04983 IgV_TCR_alpha_like Imm 99.1 1.1E-09 2.3E-14 72.3 9.4 34 22-62 3-36 (109)
55 cd05723 Ig4_Neogenin Fourth im 99.1 4.5E-10 9.8E-15 68.1 6.8 22 34-62 1-22 (71)
56 cd05854 Ig6_Contactin-2 Sixth 99.1 2.3E-09 4.9E-14 67.3 10.1 37 126-162 48-85 (85)
57 cd05899 IgV_TCR_beta Immunoglo 99.1 1.2E-09 2.6E-14 72.2 9.1 33 22-62 3-35 (110)
58 cd05748 Ig_Titin_like Immunogl 99.1 7.9E-10 1.7E-14 67.6 7.7 22 34-62 1-22 (74)
59 cd05867 Ig4_L1-CAM_like Fourth 99.1 8.6E-10 1.9E-14 67.8 7.9 26 32-65 1-26 (76)
60 cd05850 Ig1_Contactin-2 First 99.1 6E-10 1.3E-14 71.4 7.4 40 18-65 2-44 (94)
61 cd05845 Ig2_L1-CAM_like Second 99.1 5.3E-10 1.1E-14 71.0 6.5 76 17-111 2-80 (95)
62 cd05873 Ig_Sema4D_like Immunog 99.1 8E-10 1.7E-14 69.3 7.2 69 23-112 2-70 (87)
63 cd05722 Ig1_Neogenin First imm 99.1 8.2E-10 1.8E-14 70.9 7.3 39 20-66 2-40 (95)
64 cd04974 Ig3_FGFR Third immunog 99.1 4.3E-10 9.3E-15 71.5 5.9 23 32-61 1-23 (90)
65 cd05758 Ig5_KIRREL3-like Fifth 99.1 1.6E-09 3.4E-14 70.0 8.6 37 18-62 3-40 (98)
66 cd05853 Ig6_Contactin-4 Sixth 99.1 1.9E-09 4.2E-14 67.3 8.4 36 127-162 49-85 (85)
67 cd05764 Ig_2 Subgroup of the i 99.1 8.7E-10 1.9E-14 67.4 6.7 27 32-65 1-27 (74)
68 cd05771 IgC_Tapasin_R Tapasin- 99.0 2.3E-09 5E-14 73.8 9.5 75 126-203 2-79 (139)
69 cd04970 Ig6_Contactin_like Six 99.0 3.7E-09 8.1E-14 66.4 9.6 37 126-162 48-85 (85)
70 cd05746 Ig4_Peroxidasin Fourth 99.0 4.4E-10 9.5E-15 67.7 5.1 57 35-111 1-57 (69)
71 cd05858 Ig3_FGFR-2 Third immun 99.0 7.5E-10 1.6E-14 70.4 6.4 23 32-61 1-23 (90)
72 cd05725 Ig3_Robo Third immunog 99.0 8.5E-10 1.8E-14 66.5 6.2 22 35-63 1-22 (69)
73 cd05749 Ig2_Tyro3_like Second 99.0 1E-09 2.2E-14 68.1 6.6 37 20-64 1-38 (81)
74 cd05863 Ig2_VEGFR-3 Second imm 99.0 2.2E-09 4.7E-14 64.0 6.8 24 35-66 1-24 (67)
75 cd05756 Ig1_IL1R_like First im 99.0 1.9E-09 4.1E-14 69.0 7.0 32 25-63 7-43 (94)
76 cd05868 Ig4_NrCAM Fourth immun 99.0 2.1E-09 4.6E-14 66.0 6.9 27 32-66 1-27 (76)
77 cd04980 IgV_L_kappa Immunoglob 99.0 5.4E-09 1.2E-13 68.6 9.2 82 21-110 4-91 (106)
78 cd05713 Ig_MOG_like Immunoglob 99.0 1.5E-08 3.2E-13 65.7 11.1 30 32-65 1-30 (100)
79 cd05738 Ig2_RPTP_IIa_LAR_like 99.0 1.5E-09 3.3E-14 66.3 6.0 21 35-62 1-21 (74)
80 cd05856 Ig2_FGFRL1-like Second 99.0 2.3E-09 5E-14 66.8 6.9 29 27-62 4-32 (82)
81 cd00099 IgV Immunoglobulin var 99.0 5.1E-09 1.1E-13 68.4 8.8 29 27-62 1-30 (105)
82 cd05765 Ig_3 Subgroup of the i 99.0 2.1E-09 4.6E-14 66.8 6.5 23 32-61 1-23 (81)
83 cd04978 Ig4_L1-NrCAM_like Four 99.0 1.4E-09 3E-14 66.8 5.4 26 32-65 1-26 (76)
84 PF00047 ig: Immunoglobulin do 99.0 7.3E-09 1.6E-13 61.3 8.3 62 32-109 1-64 (64)
85 cd04982 IgV_TCR_gamma Immunogl 99.0 8.9E-09 1.9E-13 68.7 9.5 33 22-61 3-37 (116)
86 cd05775 Ig_SLAM-CD84_like_N N- 99.0 2.7E-09 5.9E-14 68.7 6.6 26 30-62 2-28 (97)
87 PHA02785 IL-beta-binding prote 99.0 1.3E-08 2.9E-13 79.9 11.7 64 25-110 129-197 (326)
88 cd04979 Ig_Semaphorin_C Immuno 99.0 8.6E-09 1.9E-13 65.3 8.8 33 23-63 2-34 (89)
89 cd05712 Ig_Siglec_N Immunoglob 98.9 3.2E-08 7E-13 66.2 11.7 83 23-109 5-99 (119)
90 cd05760 Ig2_PTK7 Second immuno 98.9 3E-09 6.6E-14 65.5 6.2 21 35-62 1-21 (77)
91 cd04967 Ig1_Contactin First Ig 98.9 6.1E-09 1.3E-13 66.3 7.6 38 18-62 2-42 (91)
92 cd04976 Ig2_VEGFR Second immun 98.9 4.6E-09 1E-13 63.6 6.6 23 35-65 1-23 (71)
93 cd05879 Ig_P0 Immunoglobulin ( 98.9 2.1E-08 4.6E-13 66.5 10.3 21 24-44 5-25 (116)
94 cd05876 Ig3_L1-CAM Third immun 98.9 9.1E-09 2E-13 62.3 7.9 22 35-63 1-22 (71)
95 cd07706 IgV_TCR_delta Immunogl 98.9 1.1E-08 2.3E-13 68.2 8.9 35 21-62 3-38 (116)
96 cd05900 Ig_Aggrecan Immunoglob 98.9 1.1E-08 2.3E-13 67.4 8.5 14 31-44 1-14 (112)
97 cd05880 Ig_EVA1 Immunoglobulin 98.9 1.6E-08 3.5E-13 67.2 9.4 33 24-60 5-38 (115)
98 cd05715 Ig_P0-like Immunoglobu 98.9 2.1E-08 4.5E-13 66.9 9.9 34 24-61 5-39 (116)
99 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 4.7E-09 1E-13 63.1 6.1 24 32-62 1-24 (69)
100 cd05734 Ig7_DSCAM Seventh immu 98.9 4.8E-09 1E-13 64.9 6.3 22 35-63 1-22 (79)
101 cd05753 Ig2_FcgammaR_like Seco 98.9 3.1E-09 6.7E-14 66.4 5.1 61 26-111 8-69 (83)
102 cd05727 Ig2_Contactin-2-like S 98.9 5.1E-09 1.1E-13 66.7 6.0 71 24-111 10-81 (96)
103 cd04984 IgV_L_lambda Immunoglo 98.9 2E-08 4.2E-13 64.9 8.9 75 28-110 2-83 (98)
104 cd07702 Ig2_VEGFR-1 Second imm 98.9 3.2E-09 6.9E-14 64.2 4.8 57 35-111 1-57 (72)
105 cd05855 Ig_TrkB_d5 Fifth domai 98.9 8.1E-09 1.8E-13 63.5 6.6 22 37-66 3-24 (79)
106 cd05774 Ig_CEACAM_D1 First imm 98.9 3.8E-09 8.3E-14 68.7 5.4 32 23-61 4-35 (105)
107 cd04971 Ig_TrKABC_d5 Fifth dom 98.9 8.4E-09 1.8E-13 64.1 6.7 22 37-66 3-24 (81)
108 cd05763 Ig_1 Subgroup of the i 98.9 6.4E-09 1.4E-13 63.7 6.0 22 35-63 1-22 (75)
109 cd05864 Ig2_VEGFR-2 Second imm 98.9 4.1E-09 8.8E-14 63.5 4.9 24 35-66 1-24 (70)
110 cd05742 Ig1_VEGFR_like First i 98.9 6.7E-09 1.4E-13 65.1 5.9 24 32-62 1-26 (84)
111 cd05754 Ig3_Perlecan_like Thir 98.9 8.9E-09 1.9E-13 64.7 6.3 67 22-111 6-73 (85)
112 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 2.2E-08 4.8E-13 62.7 7.8 24 32-62 1-24 (84)
113 cd05846 Ig1_MRC-OX-2_like Firs 98.8 2.1E-08 4.7E-13 64.6 7.8 25 32-62 1-25 (97)
114 cd05729 Ig2_FGFR_like Second i 98.8 2.6E-08 5.7E-13 62.3 8.0 30 26-62 3-32 (85)
115 cd05741 Ig_CEACAM_D1_like Firs 98.8 9.2E-09 2E-13 65.6 5.9 26 32-64 1-26 (92)
116 cd05731 Ig3_L1-CAM_like Third 98.8 9.7E-09 2.1E-13 62.1 5.5 22 35-63 1-22 (71)
117 cd05750 Ig_Pro_neuregulin Immu 98.8 1.4E-08 3E-13 62.1 6.2 24 35-66 1-25 (75)
118 cd05733 Ig6_L1-CAM_like Sixth 98.8 1.2E-08 2.6E-13 62.8 5.6 22 35-64 1-22 (77)
119 smart00409 IG Immunoglobulin. 98.8 1E-07 2.2E-12 59.1 10.0 30 25-61 2-31 (86)
120 smart00410 IG_like Immunoglobu 98.8 1E-07 2.2E-12 59.1 10.0 30 25-61 2-31 (86)
121 PF07686 V-set: Immunoglobulin 98.8 2.6E-08 5.7E-13 65.8 7.6 33 23-62 7-40 (114)
122 cd05716 Ig_pIgR Immunoglobulin 98.8 3.6E-08 7.9E-13 63.6 8.0 29 27-62 2-31 (98)
123 KOG3515|consensus 98.8 1.7E-08 3.7E-13 85.0 7.8 80 125-205 163-248 (741)
124 cd05878 Ig_Aggrecan_like Immun 98.8 5.3E-08 1.2E-12 64.2 8.4 36 124-159 71-107 (110)
125 cd05714 Ig_CSPGs_LP Immunoglob 98.8 5E-08 1.1E-12 63.9 8.0 37 123-159 66-103 (106)
126 cd05871 Ig_Semaphorin_classIII 98.8 4.2E-08 9E-13 62.3 7.1 29 26-62 5-33 (91)
127 cd05720 Ig_CD8_alpha Immunoglo 98.8 1.2E-07 2.7E-12 61.8 9.5 75 28-110 2-89 (104)
128 cd05877 Ig_LP_like Immunoglobu 98.7 7.9E-08 1.7E-12 63.0 8.2 35 124-158 67-102 (106)
129 cd05895 Ig_Pro_neuregulin-1 Im 98.7 4.8E-08 1E-12 59.9 6.7 24 35-66 1-25 (76)
130 PHA02987 Ig domain OX-2-like p 98.7 9.2E-08 2E-12 67.3 8.3 32 25-63 23-55 (189)
131 cd05718 Ig1_PVR_like First imm 98.7 1.8E-07 4E-12 60.2 9.3 23 124-146 61-83 (98)
132 cd05872 Ig_Sema4B_like Immunog 98.7 3.2E-08 7E-13 61.6 5.4 64 25-110 4-67 (85)
133 cd04981 IgV_H Immunoglobulin ( 98.7 1.8E-07 3.9E-12 62.4 9.4 33 23-62 3-37 (117)
134 cd05736 Ig2_Follistatin_like S 98.7 4.1E-08 8.9E-13 60.2 5.8 21 35-62 1-21 (76)
135 cd05888 Ig1_Nectin-4_like Frst 98.7 1E-07 2.2E-12 61.7 7.9 25 34-62 2-26 (100)
136 cd05874 Ig6_NrCAM Sixth immuno 98.7 4.1E-08 8.8E-13 60.4 5.7 21 35-62 1-21 (77)
137 cd05898 Ig5_KIRREL3 Fifth immu 98.7 2.1E-07 4.5E-12 59.7 9.0 34 22-61 6-39 (98)
138 cd07700 IgV_CD8_beta Immunoglo 98.7 2.2E-07 4.8E-12 60.9 8.8 29 28-63 2-31 (107)
139 cd05886 Ig1_Nectin-1_like Firs 98.7 2.6E-07 5.6E-12 59.5 8.9 22 125-146 63-84 (99)
140 cd05887 Ig1_Nectin-3_like Firs 98.7 5.3E-07 1.2E-11 57.6 10.2 29 124-152 59-87 (96)
141 smart00408 IGc2 Immunoglobulin 98.7 1E-07 2.2E-12 55.6 6.2 60 31-111 1-60 (63)
142 cd05757 Ig2_IL1R_like Second i 98.7 6.2E-08 1.3E-12 61.6 5.4 32 26-65 4-40 (92)
143 cd05875 Ig6_hNeurofascin_like 98.6 1.2E-07 2.6E-12 58.3 5.9 21 35-62 1-21 (77)
144 cd05862 Ig1_VEGFR First immuno 98.6 1.7E-07 3.6E-12 58.9 6.7 27 32-63 1-27 (86)
145 PHA02826 IL-1 receptor-like pr 98.6 1.5E-07 3.2E-12 70.0 7.4 68 24-110 136-208 (227)
146 cd05889 Ig1_DNAM-1_like First 98.6 1.2E-06 2.6E-11 56.0 10.6 35 124-158 59-93 (96)
147 cd04974 Ig3_FGFR Third immunog 98.6 2.1E-07 4.7E-12 59.0 6.9 58 101-158 2-89 (90)
148 cd05902 Ig_Neurocan Immunoglob 98.6 2.7E-07 5.9E-12 60.6 7.4 23 124-146 71-93 (110)
149 cd05751 Ig1_LILRB1_like First 98.6 1.9E-07 4.1E-12 59.4 6.4 73 17-111 2-74 (91)
150 cd05901 Ig_Versican Immunoglob 98.6 2.3E-06 4.9E-11 56.5 11.4 35 124-158 78-113 (117)
151 smart00406 IGv Immunoglobulin 98.6 5.5E-07 1.2E-11 55.6 8.0 70 34-108 1-80 (81)
152 cd05892 Ig_Myotilin_C C-termin 98.6 2.9E-07 6.3E-12 56.2 6.5 54 104-157 2-74 (75)
153 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 3E-07 6.5E-12 59.0 5.8 17 25-41 8-24 (104)
154 cd05711 Ig_FcalphaRI Immunoglo 98.5 3.9E-07 8.5E-12 58.2 6.3 36 18-62 2-37 (94)
155 cd05852 Ig5_Contactin-1 Fifth 98.5 4.9E-07 1.1E-11 54.9 6.2 56 102-157 3-72 (73)
156 cd05745 Ig3_Peroxidasin Third 98.5 4.2E-07 9.2E-12 55.4 5.7 57 101-157 3-73 (74)
157 cd05893 Ig_Palladin_C C-termin 98.5 4.9E-07 1.1E-11 55.2 6.0 54 104-157 2-74 (75)
158 PF13895 Ig_2: Immunoglobulin 98.5 7.3E-07 1.6E-11 54.8 6.9 58 27-111 9-66 (80)
159 cd05870 Ig5_NCAM-2 Fifth immun 98.5 1.3E-06 2.8E-11 56.3 7.7 59 99-157 15-97 (98)
160 cd05894 Ig_C5_MyBP-C C5 immuno 98.5 1.3E-06 2.9E-11 54.8 7.4 58 100-157 10-85 (86)
161 cd05864 Ig2_VEGFR-2 Second imm 98.5 5.9E-07 1.3E-11 54.0 5.5 55 104-158 2-68 (70)
162 cd05857 Ig2_FGFR Second immuno 98.4 1.2E-06 2.6E-11 54.8 7.1 61 97-157 6-84 (85)
163 PF13927 Ig_3: Immunoglobulin 98.4 3.7E-07 8E-12 55.4 4.6 72 18-110 2-74 (75)
164 cd05865 Ig1_NCAM-1 First immun 98.4 2.3E-06 5E-11 54.9 8.4 61 98-158 13-95 (96)
165 cd05868 Ig4_NrCAM Fourth immun 98.4 8.3E-07 1.8E-11 54.4 6.0 57 102-158 3-75 (76)
166 cd05882 Ig1_Necl-1 First (N-te 98.4 1.7E-06 3.7E-11 55.3 7.6 59 99-157 11-94 (95)
167 cd05744 Ig_Myotilin_C_like Imm 98.4 1.4E-06 3.1E-11 53.2 6.9 53 105-157 3-74 (75)
168 cd05725 Ig3_Robo Third immunog 98.4 9.6E-07 2.1E-11 53.0 5.9 53 104-156 2-67 (69)
169 cd05858 Ig3_FGFR-2 Third immun 98.4 1.4E-06 3.1E-11 55.2 6.8 57 102-158 3-89 (90)
170 cd05748 Ig_Titin_like Immunogl 98.4 1.7E-06 3.8E-11 52.6 7.0 53 104-156 3-72 (74)
171 cd05869 Ig5_NCAM-1 Fifth immun 98.4 2.2E-06 4.8E-11 55.1 7.7 58 100-157 17-96 (97)
172 cd05763 Ig_1 Subgroup of the i 98.4 1.7E-06 3.6E-11 52.8 6.7 55 104-158 2-74 (75)
173 cd04968 Ig3_Contactin_like Thi 98.4 1.6E-06 3.4E-11 54.7 6.6 60 99-158 15-87 (88)
174 cd05723 Ig4_Neogenin Fourth im 98.4 8.6E-07 1.9E-11 53.5 4.9 53 104-156 3-69 (71)
175 cd05737 Ig_Myomesin_like_C C-t 98.4 2.7E-06 5.8E-11 54.1 7.3 58 99-156 15-90 (92)
176 cd04978 Ig4_L1-NrCAM_like Four 98.4 2E-06 4.4E-11 52.5 6.4 57 102-158 3-75 (76)
177 cd05731 Ig3_L1-CAM_like Third 98.4 1.3E-06 2.8E-11 52.6 5.4 54 105-158 3-70 (71)
178 cd05721 IgV_CTLA-4 Immunoglobu 98.3 1.3E-05 2.8E-10 52.4 9.6 38 23-64 4-41 (115)
179 cd04972 Ig_TrkABC_d4 Fourth do 98.3 5.3E-06 1.1E-10 52.5 7.5 60 98-157 13-89 (90)
180 cd05732 Ig5_NCAM-1_like Fifth 98.3 5.6E-06 1.2E-10 53.0 7.6 59 99-157 15-95 (96)
181 cd05734 Ig7_DSCAM Seventh immu 98.3 3.3E-06 7.1E-11 52.1 6.2 43 105-147 3-66 (79)
182 cd05861 Ig1_PDGFR-alphabeta Fr 98.3 1E-05 2.2E-10 50.5 8.5 57 102-158 3-82 (84)
183 PF07679 I-set: Immunoglobulin 98.3 2.4E-06 5.3E-11 53.9 5.8 59 99-157 14-89 (90)
184 cd05740 Ig_CEACAM_D4 Fourth im 98.3 4.9E-06 1.1E-10 52.8 7.1 61 97-158 15-90 (91)
185 cd04969 Ig5_Contactin_like Fif 98.3 3.2E-06 6.9E-11 51.3 6.0 55 102-156 3-71 (73)
186 cd05765 Ig_3 Subgroup of the i 98.3 4.3E-06 9.4E-11 51.7 6.6 56 102-157 3-80 (81)
187 cd05856 Ig2_FGFRL1-like Second 98.3 3.7E-06 8E-11 52.1 6.3 49 99-147 8-70 (82)
188 cd05855 Ig_TrkB_d5 Fifth domai 98.3 4.1E-06 9E-11 51.5 6.1 51 106-156 4-76 (79)
189 cd05764 Ig_2 Subgroup of the i 98.3 4.5E-06 9.7E-11 50.7 6.2 47 101-147 2-62 (74)
190 cd05746 Ig4_Peroxidasin Fourth 98.2 3.2E-06 7E-11 50.7 5.3 43 105-147 3-58 (69)
191 cd05866 Ig1_NCAM-2 First immun 98.2 8.7E-06 1.9E-10 51.7 7.4 50 97-147 12-78 (92)
192 cd04977 Ig1_NCAM-1_like First 98.2 1.2E-05 2.6E-10 51.1 8.0 50 97-147 12-79 (92)
193 cd05738 Ig2_RPTP_IIa_LAR_like 98.2 6.1E-06 1.3E-10 50.2 6.3 55 104-158 2-73 (74)
194 cd05760 Ig2_PTK7 Second immuno 98.2 6.3E-06 1.4E-10 50.6 6.3 44 104-147 2-60 (77)
195 cd05743 Ig_Perlecan_D2_like Im 98.2 6.5E-06 1.4E-10 50.6 6.3 45 102-146 3-63 (78)
196 cd05897 Ig2_IL1R2_like Second 98.2 2.7E-06 5.9E-11 54.2 4.6 31 27-65 5-40 (95)
197 cd07702 Ig2_VEGFR-1 Second imm 98.2 4.5E-06 9.7E-11 50.4 5.3 43 104-146 2-57 (72)
198 cd07701 Ig1_Necl-3 First (N-te 98.2 1.5E-05 3.2E-10 51.0 8.0 58 100-157 12-94 (95)
199 cd05860 Ig4_SCFR Fourth immuno 98.2 5.6E-05 1.2E-09 48.4 10.1 33 24-62 10-42 (101)
200 cd04971 Ig_TrKABC_d5 Fifth dom 98.2 8.2E-06 1.8E-10 50.6 6.3 51 106-156 4-78 (81)
201 cd05742 Ig1_VEGFR_like First i 98.2 1.2E-05 2.6E-10 50.1 7.0 56 102-157 3-82 (84)
202 cd05851 Ig3_Contactin-1 Third 98.2 7.6E-06 1.6E-10 51.6 5.9 42 162-206 2-43 (88)
203 cd05736 Ig2_Follistatin_like S 98.1 1.8E-05 3.9E-10 48.3 7.2 55 104-158 2-73 (76)
204 cd05749 Ig2_Tyro3_like Second 98.1 6.7E-06 1.4E-10 50.9 4.6 36 170-206 5-41 (81)
205 cd05724 Ig2_Robo Second immuno 98.1 2.5E-05 5.4E-10 48.8 7.0 49 99-147 10-73 (86)
206 cd05747 Ig5_Titin_like M5, fif 98.1 1.2E-05 2.5E-10 51.2 5.4 45 161-208 3-47 (92)
207 cd05762 Ig8_MLCK Eighth immuno 98.1 1.4E-05 2.9E-10 51.5 5.7 41 170-211 7-47 (98)
208 cd05733 Ig6_L1-CAM_like Sixth 98.1 2.4E-05 5.2E-10 47.9 6.5 44 104-147 2-65 (77)
209 cd07693 Ig1_Robo First immunog 98.0 1.2E-05 2.6E-10 51.7 5.3 43 162-207 2-44 (100)
210 cd05750 Ig_Pro_neuregulin Immu 98.0 3.1E-05 6.7E-10 47.0 6.9 43 105-147 3-65 (75)
211 cd05730 Ig3_NCAM-1_like Third 98.0 1E-05 2.2E-10 51.7 4.9 45 162-207 2-46 (95)
212 cd05891 Ig_M-protein_C C-termi 98.0 3.1E-05 6.7E-10 49.2 6.8 45 102-146 18-79 (92)
213 cd05874 Ig6_NrCAM Sixth immuno 98.0 5.1E-05 1.1E-09 46.5 7.3 44 105-148 3-66 (77)
214 cd05875 Ig6_hNeurofascin_like 98.0 5.5E-05 1.2E-09 46.3 7.2 45 104-148 2-66 (77)
215 cd05849 Ig1_Contactin-1 First 98.0 3.2E-05 6.9E-10 49.3 6.2 47 101-147 20-80 (93)
216 cd04975 Ig4_SCFR_like Fourth i 98.0 1.6E-05 3.4E-10 51.5 4.8 37 171-208 11-48 (101)
217 cd05717 Ig1_Necl-1-3_like Firs 98.0 8.9E-05 1.9E-09 47.3 8.1 35 123-157 60-94 (95)
218 cd05759 Ig2_KIRREL3-like Secon 98.0 7.6E-05 1.6E-09 46.2 7.6 24 34-65 1-25 (82)
219 cd05850 Ig1_Contactin-2 First 97.9 9E-05 2E-09 47.3 7.8 48 100-147 19-81 (94)
220 cd05728 Ig4_Contactin-2-like F 97.9 2.4E-05 5.2E-10 48.9 4.6 38 170-208 6-43 (85)
221 cd05756 Ig1_IL1R_like First im 97.9 6E-05 1.3E-09 48.1 6.2 47 100-146 14-81 (94)
222 cd05722 Ig1_Neogenin First imm 97.9 3.1E-05 6.8E-10 49.5 4.9 38 170-208 6-43 (95)
223 cd05848 Ig1_Contactin-5 First 97.9 5.4E-05 1.2E-09 48.3 5.7 31 177-208 18-48 (94)
224 cd05752 Ig1_FcgammaR_like Frst 97.8 0.00013 2.9E-09 44.7 7.0 58 98-157 13-77 (78)
225 cd05758 Ig5_KIRREL3-like Fifth 97.8 7.6E-05 1.6E-09 48.0 6.0 37 171-208 9-46 (98)
226 cd05739 Ig3_RPTP_IIa_LAR_like 97.8 3.6E-05 7.9E-10 46.1 4.0 28 178-206 1-28 (69)
227 cd05881 Ig1_Necl-2 First (N-te 97.8 0.00027 5.8E-09 45.1 8.1 47 111-157 48-94 (95)
228 cd05859 Ig4_PDGFR-alpha Fourth 97.8 5.3E-05 1.1E-09 49.0 4.8 36 172-208 12-47 (101)
229 cd05895 Ig_Pro_neuregulin-1 Im 97.8 0.00018 3.9E-09 43.8 6.7 23 125-147 44-66 (76)
230 cd05885 Ig2_Necl-4 Second immu 97.8 0.00015 3.2E-09 44.6 6.2 20 127-146 45-64 (80)
231 cd05729 Ig2_FGFR_like Second i 97.7 0.00025 5.4E-09 44.0 7.4 48 100-147 9-73 (85)
232 cd05754 Ig3_Perlecan_like Thir 97.7 0.00018 3.8E-09 44.9 6.5 49 98-146 14-73 (85)
233 cd05867 Ig4_L1-CAM_like Fourth 97.7 6.5E-05 1.4E-09 45.8 4.0 29 178-207 1-29 (76)
234 cd05862 Ig1_VEGFR First immuno 97.7 0.00047 1E-08 43.2 7.7 34 125-158 50-84 (86)
235 cd00096 Ig Immunoglobulin doma 97.6 0.00013 2.9E-09 42.6 4.7 21 35-62 1-21 (74)
236 cd05773 Ig8_hNephrin_like Eigh 97.6 0.00012 2.6E-09 48.1 4.5 30 177-207 22-51 (109)
237 cd05898 Ig5_KIRREL3 Fifth immu 97.6 0.0007 1.5E-08 43.4 7.7 60 97-156 13-97 (98)
238 cd04973 Ig1_FGFR First immunog 97.6 0.00021 4.6E-09 43.9 4.9 38 172-211 3-40 (79)
239 cd05863 Ig2_VEGFR-3 Second imm 97.5 0.00012 2.5E-09 43.5 3.2 25 181-206 1-25 (67)
240 cd00098 IgC Immunoglobulin Con 97.5 0.00029 6.2E-09 44.9 5.2 28 30-65 11-40 (95)
241 cd05755 Ig2_ICAM-1_like Second 97.5 0.00055 1.2E-08 44.0 6.3 34 25-62 9-42 (100)
242 cd07690 Ig1_CD4 First immunogl 97.5 0.00046 1E-08 43.9 5.8 23 124-146 64-86 (94)
243 cd05753 Ig2_FcgammaR_like Seco 97.5 0.0007 1.5E-08 42.1 6.4 49 99-147 13-70 (83)
244 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.002 4.2E-08 44.2 9.1 39 17-62 38-78 (139)
245 cd07694 Ig2_CD4 Second immunog 97.4 0.00093 2E-08 41.4 6.5 32 26-64 8-41 (88)
246 smart00408 IGc2 Immunoglobulin 97.4 0.0008 1.7E-08 38.5 5.9 45 102-146 4-60 (63)
247 PF00047 ig: Immunoglobulin do 97.4 0.00046 1E-08 40.3 4.8 43 102-144 3-64 (64)
248 cd05757 Ig2_IL1R_like Second i 97.4 0.00064 1.4E-08 43.1 5.4 47 100-146 10-73 (92)
249 cd05735 Ig8_DSCAM Eight immuno 97.3 0.00033 7.1E-09 44.1 3.8 29 178-207 1-29 (88)
250 cd05873 Ig_Sema4D_like Immunog 97.3 0.00056 1.2E-08 42.8 4.8 37 170-208 3-39 (87)
251 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0032 7E-08 40.0 8.4 26 32-62 14-39 (93)
252 cd05889 Ig1_DNAM-1_like First 97.3 0.00046 1E-08 44.1 4.1 76 33-114 1-84 (96)
253 cd05887 Ig1_Nectin-3_like Firs 97.2 0.00049 1.1E-08 43.9 3.7 76 33-114 1-84 (96)
254 cd05871 Ig_Semaphorin_classIII 97.2 0.0027 5.8E-08 40.2 7.1 35 125-159 53-89 (91)
255 cd04967 Ig1_Contactin First Ig 97.2 0.00098 2.1E-08 42.1 5.0 29 177-206 18-46 (91)
256 cd04976 Ig2_VEGFR Second immun 97.2 0.00042 9.2E-09 41.6 3.1 27 181-208 1-27 (71)
257 cd05883 Ig2_Necl-2 Second immu 97.2 0.0098 2.1E-07 36.7 9.1 21 126-146 45-65 (82)
258 PF13895 Ig_2: Immunoglobulin 97.1 0.0027 5.9E-08 38.5 6.5 51 98-148 12-68 (80)
259 cd05886 Ig1_Nectin-1_like Firs 97.1 0.0027 5.9E-08 40.8 6.1 79 33-115 1-88 (99)
260 cd07696 IgC_CH3 CH3 domain (th 97.1 0.003 6.5E-08 40.4 6.2 33 26-63 8-41 (96)
261 cd05761 Ig2_Necl-1-4_like Seco 97.0 0.0054 1.2E-07 37.9 7.1 23 35-65 2-25 (82)
262 cd05766 IgC_MHC_II_beta Class 97.0 0.011 2.3E-07 37.6 8.6 28 31-64 13-40 (94)
263 cd05845 Ig2_L1-CAM_like Second 97.0 0.0017 3.6E-08 41.4 4.7 38 170-207 10-48 (95)
264 PHA02982 hypothetical protein; 97.0 0.003 6.6E-08 45.4 6.3 83 23-112 30-122 (251)
265 PF13927 Ig_3: Immunoglobulin 97.0 0.0017 3.6E-08 38.9 4.4 44 103-146 18-75 (75)
266 cd05767 IgC_MHC_II_alpha Class 97.0 0.0094 2E-07 37.9 7.9 28 31-64 14-41 (94)
267 cd05770 IgC_beta2m Class I maj 97.0 0.014 3E-07 37.1 8.6 29 31-65 14-42 (93)
268 cd04979 Ig_Semaphorin_C Immuno 97.0 0.0023 5E-08 40.2 5.0 35 171-207 4-38 (89)
269 cd05876 Ig3_L1-CAM Third immun 96.9 0.0011 2.3E-08 39.8 3.1 25 181-206 1-25 (71)
270 cd05741 Ig_CEACAM_D1_like Firs 96.9 0.01 2.2E-07 37.3 7.8 25 124-148 56-80 (92)
271 cd05847 IgC_CH2_IgE CH2 domain 96.9 0.0056 1.2E-07 39.0 6.4 28 31-64 13-40 (94)
272 cd07705 Ig2_Necl-1 Second immu 96.9 0.0055 1.2E-07 38.0 6.3 22 126-147 47-68 (83)
273 cd05769 IgC_TCR_beta T cell re 96.9 0.0065 1.4E-07 40.2 6.6 31 28-64 14-44 (115)
274 cd05714 Ig_CSPGs_LP Immunoglob 96.8 0.0027 5.9E-08 41.3 4.8 78 31-112 1-90 (106)
275 cd05718 Ig1_PVR_like First imm 96.8 0.0043 9.4E-08 39.6 5.5 76 33-112 1-84 (98)
276 cd05877 Ig_LP_like Immunoglobu 96.8 0.0038 8.2E-08 40.6 5.3 78 31-112 1-90 (106)
277 cd05884 Ig2_Necl-3 Second immu 96.8 0.0096 2.1E-07 36.9 6.9 22 126-147 47-68 (83)
278 cd05772 IgC_SIRP Signal-regula 96.8 0.0022 4.7E-08 42.2 4.0 47 158-206 2-50 (111)
279 cd05897 Ig2_IL1R2_like Second 96.8 0.0049 1.1E-07 39.3 5.4 22 125-146 55-76 (95)
280 smart00410 IG_like Immunoglobu 96.8 0.02 4.2E-07 34.7 8.2 22 125-146 51-72 (86)
281 smart00409 IG Immunoglobulin. 96.8 0.02 4.2E-07 34.7 8.2 22 125-146 51-72 (86)
282 cd05726 Ig4_Robo Fhird immunog 96.8 0.0019 4.2E-08 40.6 3.5 25 178-203 1-25 (90)
283 cd05759 Ig2_KIRREL3-like Secon 96.7 0.0076 1.6E-07 37.1 6.0 44 104-147 3-68 (82)
284 smart00407 IGc1 Immunoglobulin 96.7 0.011 2.3E-07 35.9 6.5 25 34-64 1-25 (75)
285 cd05888 Ig1_Nectin-4_like Frst 96.7 0.0055 1.2E-07 39.5 5.3 19 127-145 66-84 (100)
286 cd05775 Ig_SLAM-CD84_like_N N- 96.6 0.005 1.1E-07 39.4 4.7 22 89-110 60-81 (97)
287 cd05878 Ig_Aggrecan_like Immun 96.6 0.0066 1.4E-07 39.9 5.4 78 31-112 1-94 (110)
288 cd05885 Ig2_Necl-4 Second immu 96.6 0.0031 6.8E-08 38.8 3.3 25 181-206 2-27 (80)
289 cd07692 Ig_CD3_epsilon Immunog 96.6 0.0052 1.1E-07 35.8 4.0 23 30-62 5-27 (65)
290 PF07654 C1-set: Immunoglobuli 96.6 0.019 4.2E-07 35.4 6.9 25 32-61 8-32 (83)
291 cd05854 Ig6_Contactin-2 Sixth 96.5 0.0045 9.7E-08 38.6 4.0 28 179-207 1-30 (85)
292 cd05727 Ig2_Contactin-2-like S 96.5 0.0062 1.3E-07 38.9 4.6 33 172-205 12-45 (96)
293 cd05768 IgC_CH4 CH4 domain (fo 96.5 0.0075 1.6E-07 39.0 4.9 29 28-61 12-40 (102)
294 cd07699 IgC_L Immunoglobulin C 96.5 0.0066 1.4E-07 39.1 4.6 32 28-65 13-44 (100)
295 cd05846 Ig1_MRC-OX-2_like Firs 96.5 0.0088 1.9E-07 38.2 5.1 22 125-146 61-82 (97)
296 cd05774 Ig_CEACAM_D1 First imm 96.5 0.0075 1.6E-07 39.2 4.7 21 91-111 71-91 (105)
297 PF08205 C2-set_2: CD80-like C 96.4 0.018 3.9E-07 36.0 6.4 26 32-64 14-40 (89)
298 cd05879 Ig_P0 Immunoglobulin ( 96.4 0.011 2.4E-07 39.2 5.6 22 125-146 80-101 (116)
299 cd04983 IgV_TCR_alpha_like Imm 96.4 0.014 3E-07 38.0 6.0 25 122-146 67-91 (109)
300 cd05900 Ig_Aggrecan Immunoglob 96.4 0.01 2.2E-07 39.1 5.2 21 125-145 74-94 (112)
301 cd04986 IgC_CH2 CH2 domain (se 96.4 0.015 3.3E-07 37.3 5.8 33 27-63 14-46 (99)
302 cd04970 Ig6_Contactin_like Six 96.4 0.0066 1.4E-07 37.7 4.1 28 179-207 1-30 (85)
303 cd07697 IgC_TCR_gamma T cell r 96.3 0.033 7.1E-07 35.6 6.9 28 31-64 15-42 (96)
304 cd05772 IgC_SIRP Signal-regula 96.3 0.03 6.6E-07 36.8 6.9 32 28-65 17-48 (111)
305 cd00099 IgV Immunoglobulin var 96.2 0.019 4.2E-07 37.0 5.9 25 123-147 65-89 (105)
306 KOG3515|consensus 96.2 0.035 7.6E-07 48.0 8.7 45 155-200 293-338 (741)
307 cd05751 Ig1_LILRB1_like First 96.2 0.047 1E-06 34.4 7.3 23 124-146 52-74 (91)
308 cd05902 Ig_Neurocan Immunoglob 96.2 0.012 2.7E-07 38.5 4.6 77 31-111 1-93 (110)
309 PF08204 V-set_CD47: CD47 immu 96.1 0.013 2.7E-07 39.4 4.6 35 29-68 24-60 (130)
310 PHA03273 envelope glycoprotein 96.1 0.34 7.3E-06 39.5 13.1 77 125-206 198-280 (486)
311 cd07699 IgC_L Immunoglobulin C 96.1 0.0092 2E-07 38.4 3.8 31 175-206 14-46 (100)
312 cd05755 Ig2_ICAM-1_like Second 96.1 0.014 3E-07 37.5 4.5 34 172-206 10-46 (100)
313 cd05880 Ig_EVA1 Immunoglobulin 96.1 0.014 3.1E-07 38.6 4.6 20 126-145 80-99 (115)
314 PHA03270 envelope glycoprotein 96.1 0.55 1.2E-05 38.0 13.9 179 16-206 76-264 (466)
315 cd05715 Ig_P0-like Immunoglobu 96.0 0.017 3.7E-07 38.2 4.9 20 126-145 81-100 (116)
316 PHA02633 hypothetical protein; 96.0 0.02 4.3E-07 32.9 4.3 20 127-146 20-39 (63)
317 cd07691 Ig_CD3_gamma_delta Imm 96.0 0.021 4.5E-07 33.6 4.4 18 32-60 6-23 (69)
318 PHA03271 envelope glycoprotein 95.9 0.15 3.3E-06 40.8 10.3 180 16-207 93-291 (490)
319 cd05883 Ig2_Necl-2 Second immu 95.9 0.013 2.7E-07 36.2 3.6 25 181-206 2-27 (82)
320 PF07686 V-set: Immunoglobulin 95.9 0.047 1E-06 35.4 6.6 26 122-147 76-101 (114)
321 cd05769 IgC_TCR_beta T cell re 95.9 0.015 3.4E-07 38.4 4.0 44 161-206 2-47 (115)
322 cd05872 Ig_Sema4B_like Immunog 95.8 0.019 4.1E-07 35.7 4.1 36 172-209 5-40 (85)
323 cd05896 Ig1_IL1RAPL-1_like Fir 95.8 0.017 3.6E-07 37.3 3.8 7 56-62 43-49 (104)
324 cd05768 IgC_CH4 CH4 domain (fo 95.8 0.018 3.8E-07 37.3 4.0 31 175-206 13-45 (102)
325 cd05860 Ig4_SCFR Fourth immuno 95.8 0.03 6.5E-07 36.0 4.9 34 171-205 11-45 (101)
326 PHA03269 envelope glycoprotein 95.7 0.32 7E-06 39.9 11.5 79 123-206 287-372 (566)
327 cd04980 IgV_L_kappa Immunoglob 95.6 0.039 8.4E-07 35.8 5.3 23 123-145 69-91 (106)
328 cd05884 Ig2_Necl-3 Second immu 95.6 0.019 4.1E-07 35.6 3.6 25 181-206 2-27 (83)
329 cd07705 Ig2_Necl-1 Second immu 95.5 0.022 4.7E-07 35.3 3.5 25 181-206 2-27 (83)
330 cd04984 IgV_L_lambda Immunoglo 95.5 0.07 1.5E-06 34.0 6.0 23 123-145 61-83 (98)
331 cd05853 Ig6_Contactin-4 Sixth 95.5 0.029 6.2E-07 35.0 3.9 28 179-207 1-30 (85)
332 cd05766 IgC_MHC_II_beta Class 95.5 0.049 1.1E-06 34.6 5.1 31 176-207 12-44 (94)
333 cd05761 Ig2_Necl-1-4_like Seco 95.4 0.025 5.4E-07 34.9 3.6 25 181-206 2-27 (82)
334 smart00406 IGv Immunoglobulin 95.4 0.022 4.8E-07 34.5 3.4 23 122-144 59-81 (81)
335 cd05767 IgC_MHC_II_alpha Class 95.4 0.049 1.1E-06 34.6 5.0 29 177-206 14-44 (94)
336 cd07697 IgC_TCR_gamma T cell r 95.2 0.029 6.3E-07 35.8 3.5 31 175-206 13-45 (96)
337 cd05716 Ig_pIgR Immunoglobulin 95.2 0.039 8.4E-07 35.2 4.1 19 127-145 66-84 (98)
338 cd05770 IgC_beta2m Class I maj 95.2 0.06 1.3E-06 34.2 4.8 30 176-206 13-44 (93)
339 PHA02633 hypothetical protein; 95.2 0.021 4.6E-07 32.8 2.4 25 88-112 16-40 (63)
340 cd04985 IgC_CH1 CH1 domain (fi 95.1 0.15 3.3E-06 32.4 6.6 26 31-61 15-40 (95)
341 cd07698 IgC_MHC_I_alpha3 Class 95.1 0.065 1.4E-06 33.9 4.9 25 178-203 14-40 (93)
342 cd00098 IgC Immunoglobulin Con 95.1 0.036 7.9E-07 35.0 3.7 31 176-207 11-43 (95)
343 cd07689 Ig2_VCAM-1 Second immu 94.7 0.3 6.5E-06 31.2 7.0 29 30-62 13-41 (99)
344 cd05899 IgV_TCR_beta Immunoglo 94.7 0.066 1.4E-06 35.0 4.3 32 169-201 4-35 (110)
345 PF08205 C2-set_2: CD80-like C 94.6 0.038 8.1E-07 34.5 2.8 27 178-205 14-41 (89)
346 PF11465 Receptor_2B4: Natural 94.5 0.77 1.7E-05 29.7 8.5 24 125-148 71-94 (108)
347 cd00096 Ig Immunoglobulin doma 94.3 0.23 4.9E-06 28.2 5.7 24 124-147 42-65 (74)
348 PF07354 Sp38: Zona-pellucida- 94.2 0.07 1.5E-06 40.1 3.7 43 56-110 15-57 (271)
349 cd05713 Ig_MOG_like Immunoglob 94.2 0.033 7.1E-07 35.6 1.8 36 78-113 51-88 (100)
350 cd07706 IgV_TCR_delta Immunogl 94.1 0.19 4.2E-06 33.1 5.6 34 113-146 59-93 (116)
351 PHA02987 Ig domain OX-2-like p 93.8 0.24 5.2E-06 35.5 5.7 39 122-160 82-123 (189)
352 cd07704 Ig2_Nectin-3-4_like Se 93.8 0.83 1.8E-05 29.2 7.6 30 25-61 9-40 (97)
353 smart00407 IGc1 Immunoglobulin 93.6 0.13 2.7E-06 31.1 3.6 24 181-205 2-27 (75)
354 cd04982 IgV_TCR_gamma Immunogl 93.6 0.16 3.6E-06 33.4 4.5 31 170-200 5-37 (116)
355 cd05712 Ig_Siglec_N Immunoglob 93.6 0.098 2.1E-06 34.8 3.4 25 122-146 77-101 (119)
356 cd07694 Ig2_CD4 Second immunog 93.4 1 2.2E-05 28.1 7.3 42 105-146 19-72 (88)
357 cd04985 IgC_CH1 CH1 domain (fi 93.4 0.26 5.6E-06 31.4 4.9 27 177-204 15-43 (95)
358 PF07654 C1-set: Immunoglobuli 93.2 0.17 3.7E-06 31.1 3.8 29 177-206 7-37 (83)
359 cd05719 Ig2_PVR_like Second im 93.1 1.4 3.1E-05 28.0 9.0 23 32-61 15-38 (95)
360 cd07696 IgC_CH3 CH3 domain (th 93.0 0.13 2.8E-06 32.8 3.1 29 175-203 11-42 (96)
361 cd05847 IgC_CH2_IgE CH2 domain 93.0 0.14 3E-06 32.5 3.2 28 177-205 13-42 (94)
362 cd05720 Ig_CD8_alpha Immunoglo 92.6 0.2 4.4E-06 32.3 3.7 23 123-145 67-89 (104)
363 cd05711 Ig_FcalphaRI Immunoglo 92.5 1.1 2.4E-05 28.3 6.9 22 124-145 54-75 (94)
364 KOG1480|consensus 91.9 0.11 2.4E-06 44.7 2.2 106 17-144 129-235 (909)
365 cd04986 IgC_CH2 CH2 domain (se 91.8 0.39 8.4E-06 30.8 4.1 28 175-203 16-46 (99)
366 PHA02914 Immunoglobulin-like d 91.7 1.5 3.3E-05 35.2 8.0 83 24-111 271-367 (500)
367 cd05901 Ig_Versican Immunoglob 91.7 0.12 2.7E-06 34.2 1.8 78 31-112 1-101 (117)
368 PHA03240 envelope glycoprotein 91.7 0.38 8.3E-06 34.9 4.3 29 25-60 31-59 (258)
369 cd07700 IgV_CD8_beta Immunoglo 91.5 0.2 4.3E-06 32.5 2.7 21 125-145 72-92 (107)
370 PHA02914 Immunoglobulin-like d 91.2 6.5 0.00014 31.8 10.9 21 24-44 18-39 (500)
371 KOG4597|consensus 91.2 0.48 1E-05 38.8 4.9 80 18-111 197-278 (560)
372 KOG1480|consensus 90.7 0.44 9.4E-06 41.4 4.5 43 16-61 23-65 (909)
373 PHA03042 CD47-like protein; Pr 90.5 0.96 2.1E-05 34.4 5.6 33 29-66 28-62 (286)
374 cd07703 Ig2_Nectin-2_like Seco 90.2 3.3 7.2E-05 26.3 9.4 21 34-61 17-38 (95)
375 PHA03052 Hypothetical protein; 89.8 1.7 3.8E-05 25.5 5.1 35 24-62 4-38 (69)
376 cd07704 Ig2_Nectin-3-4_like Se 88.9 1 2.2E-05 28.8 4.2 30 171-200 9-40 (97)
377 PHA03052 Hypothetical protein; 87.2 2.9 6.2E-05 24.6 4.9 33 172-205 6-41 (69)
378 cd04981 IgV_H Immunoglobulin ( 86.0 1.8 3.9E-05 28.6 4.3 31 171-201 5-37 (117)
379 cd07691 Ig_CD3_gamma_delta Imm 85.4 5.5 0.00012 23.6 5.5 34 124-160 32-65 (69)
380 cd07692 Ig_CD3_epsilon Immunog 84.7 1.1 2.4E-05 26.2 2.4 27 176-206 5-31 (65)
381 cd07689 Ig2_VCAM-1 Second immu 83.5 2.3 4.9E-05 27.3 3.6 28 175-203 12-42 (99)
382 PHA03189 UL14 tegument protein 80.6 25 0.00055 27.5 9.1 25 24-48 59-83 (348)
383 cd05719 Ig2_PVR_like Second im 80.4 2.9 6.2E-05 26.6 3.4 23 178-200 15-38 (95)
384 PF05790 C2-set: Immunoglobuli 80.2 11 0.00024 23.1 7.6 27 127-153 45-71 (80)
385 cd07703 Ig2_Nectin-2_like Seco 79.3 3 6.4E-05 26.5 3.2 22 179-200 16-38 (95)
386 PHA03376 BARF1; Provisional 77.5 1.6 3.4E-05 31.6 1.6 36 77-113 75-110 (221)
387 PHA03270 envelope glycoprotein 76.1 43 0.00093 27.6 11.3 42 16-63 220-261 (466)
388 PF07354 Sp38: Zona-pellucida- 72.2 4.3 9.3E-05 30.9 2.8 22 125-146 37-58 (271)
389 cd05721 IgV_CTLA-4 Immunoglobu 71.6 11 0.00023 25.0 4.3 29 172-200 7-38 (115)
390 PF06328 Lep_receptor_Ig: Ig-l 71.1 23 0.00049 22.2 7.0 20 24-43 10-29 (89)
391 PHA03112 IL-18 binding protein 67.9 28 0.00061 23.9 5.8 28 30-62 36-63 (141)
392 PHA02865 MHC-like TNF binding 67.7 17 0.00038 28.9 5.4 23 34-61 216-238 (338)
393 PF06328 Lep_receptor_Ig: Ig-l 65.8 21 0.00045 22.4 4.6 33 172-205 12-49 (89)
394 PF06832 BiPBP_C: Penicillin-B 64.9 30 0.00066 21.3 5.6 25 180-206 31-55 (89)
395 PHA03269 envelope glycoprotein 63.3 92 0.002 26.3 12.5 42 16-63 328-369 (566)
396 PF02440 Adeno_E3_CR1: Adenovi 58.6 34 0.00075 19.9 4.8 21 29-60 2-22 (63)
397 PF05790 C2-set: Immunoglobuli 58.2 41 0.00088 20.6 6.5 23 91-113 44-67 (80)
398 PHA03273 envelope glycoprotein 54.8 1.3E+02 0.0028 25.3 12.1 42 16-63 236-277 (486)
399 PHA02865 MHC-like TNF binding 54.3 25 0.00053 28.1 4.2 21 180-200 216-238 (338)
400 PHA03271 envelope glycoprotein 46.5 1.7E+02 0.0037 24.3 13.3 41 16-62 246-286 (490)
401 cd05890 Ig2_Nectin-1_like Seco 40.8 82 0.0018 20.1 4.2 17 106-122 26-43 (98)
402 PHA02982 hypothetical protein; 40.1 1.6E+02 0.0034 22.0 7.7 27 122-148 97-123 (251)
403 PF10572 UPF0556: Uncharacteri 37.2 1.5E+02 0.0032 20.9 6.5 14 134-147 69-82 (158)
404 KOG4597|consensus 34.3 69 0.0015 26.9 3.9 55 103-157 214-290 (560)
405 PF15096 G6B: G6B family 33.8 49 0.0011 23.9 2.7 15 30-44 9-23 (224)
406 PHA02935 Hypothetical protein; 32.7 94 0.002 22.8 4.1 64 127-190 104-167 (349)
407 KOG0613|consensus 31.5 2.8E+02 0.0061 26.6 7.6 108 91-200 246-372 (1205)
408 TIGR00864 PCC polycystin catio 27.7 7.9E+02 0.017 26.4 16.2 99 107-206 1807-1910(2740)
409 PHA03282 envelope glycoprotein 27.4 1.3E+02 0.0028 25.4 4.4 23 124-146 123-145 (540)
410 PHA03282 envelope glycoprotein 27.2 1.3E+02 0.0028 25.4 4.3 22 125-146 333-354 (540)
411 PF01688 Herpes_gI: Alphaherpe 25.1 2.3E+02 0.005 20.1 4.8 26 122-147 121-146 (161)
412 PF06214 SLAM: Signaling lymph 24.8 1.2E+02 0.0026 19.9 3.1 17 27-43 35-51 (126)
413 PHA03286 envelope glycoprotein 24.1 1.1E+02 0.0025 25.5 3.5 44 105-148 287-330 (492)
414 PF02480 Herpes_gE: Alphaherpe 21.0 81 0.0018 26.4 2.3 21 126-146 270-290 (439)
415 PF03921 ICAM_N: Intercellular 20.5 2.4E+02 0.0051 17.8 8.5 22 21-42 7-28 (91)
No 1
>KOG3513|consensus
Probab=99.87 E-value=7.6e-21 Score=161.53 Aligned_cols=176 Identities=24% Similarity=0.415 Sum_probs=140.6
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.....|.++..+++..+..|++++|.|.+.+.|.+. +.|++ ++.++... ..+.++.+. .+.|
T Consensus 327 ~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~-------v~Wlk-Ng~pl~~~-----~r~~~~~i~-----~g~L 388 (1051)
T KOG3513|consen 327 TVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT-------VKWLK-NGEPLEPA-----ERDPRYKID-----DGTL 388 (1051)
T ss_pred EEecCchhhcccceeEecCCCCeEEEEEecCCCCCc-------eEEee-CCeecCcc-----CCCcceEEe-----CCEE
Confidence 345689999999999999999999999999999998 99999 56555311 122334442 3489
Q ss_pred EEccceecCCEEEEEEccC---------------------------------------------CCceEEEEccC-----
Q psy5838 93 NIKNVQESDRGWYMCQVNT---------------------------------------------NPRISLTYNDH----- 122 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~~----- 122 (215)
.|.+++.+|+|+|+|.|.| .|.+.+.|.+.
T Consensus 389 ~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~ 468 (1051)
T KOG3513|consen 389 IISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLL 468 (1051)
T ss_pred EEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccc
Confidence 9999999999999999884 46677777432
Q ss_pred --------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCC-
Q psy5838 123 --------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPE- 192 (215)
Q Consensus 123 --------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~- 192 (215)
.+..|.|.+++.+|+|.|+|.|.+ .++......|.|..++.+.. .+....+..|+++.|.|.+...|.
T Consensus 469 ~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~--~P~~~~v~~g~~v~l~Ce~shD~~l 546 (1051)
T KOG3513|consen 469 QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL--APSNTDVKVGESVTLTCEASHDPSL 546 (1051)
T ss_pred cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe--ccchhhhccCceEEEEeecccCCCc
Confidence 245699999999999999999976 57778888999999999887 344556889999999999976554
Q ss_pred -CeEEEEeCCCccccccC
Q psy5838 193 -PYVMWRREDGANLSYNG 209 (215)
Q Consensus 193 -~~i~W~~~~~~~~~~~~ 209 (215)
..+.|.+ ||..++...
T Consensus 547 d~~f~W~~-nG~~id~~~ 563 (1051)
T KOG3513|consen 547 DITFTWKK-NGRPIDFNP 563 (1051)
T ss_pred ceEEEEEE-CCEEhhccC
Confidence 4689999 888877643
No 2
>KOG3513|consensus
Probab=99.85 E-value=4.2e-20 Score=157.07 Aligned_cols=179 Identities=25% Similarity=0.387 Sum_probs=137.1
Q ss_pred ccCCCcccCC-CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 14 ESLMPHFAEP-IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 14 ~~~~p~~~~~-~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
....|+|... +.+..+..|+.|.|+|.+.|.|.|+ +.|.|.++.++ ..|..... ....|
T Consensus 237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~-------i~W~k~~g~~~----------~~r~~~~~---~~~vL 296 (1051)
T KOG3513|consen 237 REYAPKILVPFPETETALKGQSVKLECFALGNPTPQ-------IKWRKVDGKPP----------PRRATYSN---YGKVL 296 (1051)
T ss_pred cccCCccccCCCCcccccCCCeEEEEEEecCCCCCc-------EEEEeCCCCCC----------Ccceeeec---cccEE
Confidence 3446777766 5578888999999999999999998 99999887643 22222222 23489
Q ss_pred EEccceecCCEEEEEEccC------------------------------------------CCceEEEEccC--------
Q psy5838 93 NIKNVQESDRGWYMCQVNT------------------------------------------NPRISLTYNDH-------- 122 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~------------------------------------------~~~~~~~~~~~-------- 122 (215)
.|.|++.+|+|.|.|.|.| .|.++++|...
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~ 376 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAE 376 (1051)
T ss_pred EecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccC
Confidence 9999999999999999874 57777777321
Q ss_pred -------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcC-CeEEecCCCcceeeecCCcEEEEEEecccCCC
Q psy5838 123 -------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVP-PSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193 (215)
Q Consensus 123 -------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 193 (215)
....|+|.+++.+|+|.|+|.|.+ .+.....+.|.|... |.+........+.+..|..+.+.|...+.|.|
T Consensus 377 r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p 456 (1051)
T KOG3513|consen 377 RDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP 456 (1051)
T ss_pred CCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc
Confidence 235699999999999999999977 456677788998854 65554333344567899999999999999999
Q ss_pred eEEEEeCCCccccccCCccc
Q psy5838 194 YVMWRREDGANLSYNGDTEL 213 (215)
Q Consensus 194 ~i~W~~~~~~~~~~~~~~~~ 213 (215)
.+.|.+ ++..+..++++++
T Consensus 457 ~~~W~k-~~~~~~~~~r~~i 475 (1051)
T KOG3513|consen 457 KVSWLK-GGEKLLQSGRIRI 475 (1051)
T ss_pred eEEEEc-CCcccccCceEEE
Confidence 999999 5555555666654
No 3
>KOG4221|consensus
Probab=99.77 E-value=1.4e-17 Score=142.07 Aligned_cols=171 Identities=26% Similarity=0.456 Sum_probs=131.2
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
.-.+.|...+.+.++..|+++.|.|.+.+.+.+. +.|.+++ .++. .++|+.... ++.|.|
T Consensus 138 a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~-------i~w~kn~-~pl~--------~~~r~i~lp----sG~L~I 197 (1381)
T KOG4221|consen 138 AGLADFALQPESTTLLYGQTALFSCEVNAEPVPT-------IMWLKND-QPLP--------LDSRVIVLP----SGALEI 197 (1381)
T ss_pred cccCccccCccceeEecCCcEEEEEEEcCccCce-------eEEeccc-cccc--------CCCcEEEcC----CCcEEe
Confidence 3457788888899999999999999999877776 9999954 4332 233554443 458999
Q ss_pred ccceecCCEEEEEEccC-------------------------------------------------CCceEEEEccC---
Q psy5838 95 KNVQESDRGWYMCQVNT-------------------------------------------------NPRISLTYNDH--- 122 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~-------------------------------------------------~~~~~~~~~~~--- 122 (215)
.+++..|.|.|.|.+.+ .|.+.+.|...
T Consensus 198 ~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~ 277 (1381)
T KOG4221|consen 198 SGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEK 277 (1381)
T ss_pred cccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCee
Confidence 99999999999999874 34455555211
Q ss_pred -----------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEeccc
Q psy5838 123 -----------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190 (215)
Q Consensus 123 -----------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 190 (215)
....|.|.+++..|+|.|+|+|.+. ......+.+.|..+|.+.. .+......++.++.|.|.+.|.
T Consensus 278 i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~--~p~~l~A~e~~die~ec~~~g~ 355 (1381)
T KOG4221|consen 278 ISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK--APTTLVAHESMDIEFECPVSGK 355 (1381)
T ss_pred eeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC--CCcceeeeeccceeEeCCCCCC
Confidence 1234889999999999999999763 4456667788998988774 3455567789999999999999
Q ss_pred CCCeEEEEeCCCcccccc
Q psy5838 191 PEPYVMWRREDGANLSYN 208 (215)
Q Consensus 191 p~~~i~W~~~~~~~~~~~ 208 (215)
|.|.+.|+| ||..+..+
T Consensus 356 p~p~v~w~k-Ngd~~ips 372 (1381)
T KOG4221|consen 356 PIPTVRWYK-NGDRIIPS 372 (1381)
T ss_pred CcceEEEEe-cCcccCcc
Confidence 999999999 77665543
No 4
>KOG4194|consensus
Probab=99.77 E-value=4.2e-18 Score=136.73 Aligned_cols=190 Identities=21% Similarity=0.345 Sum_probs=134.9
Q ss_pred cccccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEee--ec-eeeeCCceEEEE-
Q psy5838 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH--HN-VITQNPRISLTY- 84 (215)
Q Consensus 9 ~~~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~--~~-~~~~~~~~~~~~- 84 (215)
......+.+|++...|+.+.+..|+.++|+|.+.++.... . .+.|.+.+. ...... +. ......|-....
T Consensus 495 ~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasp-l----si~WR~dne-vq~rv~ved~a~~~~q~r~~~~~e 568 (873)
T KOG4194|consen 495 NLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASP-L----SIEWRKDNE-VQPRVDVEDFATFLSQNRNGTFGE 568 (873)
T ss_pred hceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCC-c----eeEeeeccc-cCcccchhcchhhhhhhccCccch
Confidence 3456688899999999999999999999999998742221 1 289988543 211100 00 001111111111
Q ss_pred cCCceEEEEEccceecCCEEEEEEcc-------------------------------------------CCCceEEEEcc
Q psy5838 85 NDHRSWFLNIKNVQESDRGWYMCQVN-------------------------------------------TNPRISLTYND 121 (215)
Q Consensus 85 ~~~~~~~l~i~~~~~~d~G~Y~C~~~-------------------------------------------~~~~~~~~~~~ 121 (215)
...-.+.|.+.|++..|+|+|+|.+. |.|.+.+.|..
T Consensus 569 ~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqk 648 (873)
T KOG4194|consen 569 REEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQK 648 (873)
T ss_pred hhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehh
Confidence 11134579999999999999999876 35777777733
Q ss_pred C-----------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEE
Q psy5838 122 H-----------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183 (215)
Q Consensus 122 ~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l 183 (215)
. .+-.+.|.+++.+|+|.|+|.|.+ .+..+..+++.|...|.+..+ -.+..+..|++..|
T Consensus 649 dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~get~vl 726 (873)
T KOG4194|consen 649 DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGETLVL 726 (873)
T ss_pred cCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecceEEE
Confidence 1 123477999999999999999976 567788889999999887764 33456788999999
Q ss_pred EEEecccCC-CeEEEEeCCCccccc
Q psy5838 184 NCKAQGYPE-PYVMWRREDGANLSY 207 (215)
Q Consensus 184 ~C~~~~~p~-~~i~W~~~~~~~~~~ 207 (215)
.|.+.+.|. |.+.|++ +.+++-.
T Consensus 727 qC~a~~~~a~pr~~W~k-~d~pil~ 750 (873)
T KOG4194|consen 727 QCLAEGAPADPRLEWFK-EDKPILI 750 (873)
T ss_pred EEecCCCCCCccccccC-CCCceEE
Confidence 999999877 8999999 5555543
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.76 E-value=4.9e-17 Score=127.16 Aligned_cols=155 Identities=22% Similarity=0.438 Sum_probs=104.4
Q ss_pred ceEEEeCCcEEEEEEe-----eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 26 NVTVTVGRDALLACVV-----DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~-----~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
...+.+|+.+.|.|.+ .+.+.+. +.|+|+++.. .+. .... ....|.|.++..+
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~-------i~W~K~g~~~------------~~~-~~~~--~g~~l~i~~~~~~ 92 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILD-------ILWEKRGADN------------DRI-IPID--NGSNMLILNPTQS 92 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCce-------EEEEECCCcc------------ceE-EEcc--CCceEEEcccCcc
Confidence 4455689999999997 4666666 9999964320 011 1111 1124778999999
Q ss_pred CCEEEEEEccC-------------------------------------------------CCceEEEEccCC--------
Q psy5838 101 DRGWYMCQVNT-------------------------------------------------NPRISLTYNDHR-------- 123 (215)
Q Consensus 101 d~G~Y~C~~~~-------------------------------------------------~~~~~~~~~~~~-------- 123 (215)
|+|.|+|.+.| .+.+.+.|....
T Consensus 93 DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~ 172 (326)
T PHA02785 93 DSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLK 172 (326)
T ss_pred cCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceE
Confidence 99999998764 234456663211
Q ss_pred ---eEEEEEcccCCCCCeEEEEEeecC-CCcc----eeeEEEEEc---CCeEEecCCCcceeeecCCcEEEEEEecccCC
Q psy5838 124 ---SWFLNIKNVQESDRGWYMCQVNTD-PMRS----RQGYLQVVV---PPSIIDKDTSTDLVVREQANVTLNCKAQGYPE 192 (215)
Q Consensus 124 ---~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~----~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 192 (215)
...|.|.+++.+|.|.|+|.+.+. +... ..+.+.|.. ||.+. .+....+..|+.+.|.|.+.+.|.
T Consensus 173 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~---~p~~~~~~~G~~v~L~C~a~g~P~ 249 (326)
T PHA02785 173 QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ---LPEGVVTSIGSNLTIACRVSLRPP 249 (326)
T ss_pred ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec---CCCcEEecCCCcEEEEEEEECCCC
Confidence 246999999999999999999763 2222 223344432 33332 334556778999999999999876
Q ss_pred C---eEEEEeCCCcccc
Q psy5838 193 P---YVMWRREDGANLS 206 (215)
Q Consensus 193 ~---~i~W~~~~~~~~~ 206 (215)
+ .+.|++ ||..+.
T Consensus 250 ~~~~~v~W~k-ng~~i~ 265 (326)
T PHA02785 250 TTDADVFWIS-NGMYYE 265 (326)
T ss_pred CCCceEEEEE-CCEECC
Confidence 4 799999 787664
No 6
>KOG4222|consensus
Probab=99.63 E-value=2.8e-15 Score=127.60 Aligned_cols=169 Identities=29% Similarity=0.473 Sum_probs=129.2
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
+..|...+..+.+..|+.++|+|.-. +++.+. +.|.| ++..+.. ....++.+. ..|.|.|.
T Consensus 131 rddfrv~prd~~~a~ge~avlEcgpP~ghpept-------vSw~K-dg~pl~~------~~~~~~~li----sgG~LlIs 192 (1281)
T KOG4222|consen 131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPT-------VSWVK-DGKPLDH------YDVPIIALI----SGGNLLIS 192 (1281)
T ss_pred chhcccCcccccccccceeEEeccCCCCCCCCc-------ceeec-CCCcccc------ccceeEEEe----cCCcEEEe
Confidence 44577778889999999999999854 677787 99999 6665531 112233333 34589999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEcc-----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYND----------- 121 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~----------- 121 (215)
|+..+|+|.|.|.+.+ +|.+.+.|..
T Consensus 193 nvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~ 272 (1281)
T KOG4222|consen 193 NVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYS 272 (1281)
T ss_pred ccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCcccee
Confidence 9999999999999873 5566666632
Q ss_pred --CCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEE
Q psy5838 122 --HRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198 (215)
Q Consensus 122 --~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~ 198 (215)
..+.+|+|.+++..|.|.|.|.+.+ .+.......+.|+.+|.+... +.+..+..|..++|.|.+.++|.|.++|.
T Consensus 273 i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk--p~dq~v~lg~~vt~pc~~~gnP~PavfW~ 350 (1281)
T KOG4222|consen 273 ILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK--PRDQKVALGGTVTFPCETLGNPPPAVFWL 350 (1281)
T ss_pred eeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccc--cCccccccCceEEeeeecCCCCCcceEEe
Confidence 1235688999999999999999966 566777788999999988764 33445778999999999999999999999
Q ss_pred eCCCccc
Q psy5838 199 REDGANL 205 (215)
Q Consensus 199 ~~~~~~~ 205 (215)
+++++.+
T Consensus 351 keg~q~l 357 (1281)
T KOG4222|consen 351 KEGSQDL 357 (1281)
T ss_pred ccCccee
Confidence 9655544
No 7
>KOG4221|consensus
Probab=99.60 E-value=1.4e-14 Score=124.09 Aligned_cols=177 Identities=27% Similarity=0.438 Sum_probs=121.4
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
..-.-.|...|.+. .+|..+.|.|....... ..+. ++|.| ++..+.. ..+.|.+.. .+++|.
T Consensus 38 ~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~-~~~~----i~wkk-Dg~~l~e------~~d~~~~~L----sNgSl~ 99 (1381)
T KOG4221|consen 38 ANTPLQFLLEPSDA--MEGSSVLLECSAYAAGG-TSVK----IEWKK-DGSQLNE------VYDDRRQLL----SNGSLY 99 (1381)
T ss_pred ccCcceEEeccccc--ccccceEEeccccccCC-CCee----EEEcc-Cchhhhh------hhhhHHhhc----cCCcee
Confidence 33345566666544 78999999999875443 1222 89987 6554422 122333333 345888
Q ss_pred Ecccee-----cCCEEEEEEccC--------------------------------------------CCceEEEEccC--
Q psy5838 94 IKNVQE-----SDRGWYMCQVNT--------------------------------------------NPRISLTYNDH-- 122 (215)
Q Consensus 94 i~~~~~-----~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~-- 122 (215)
|.++.. .|+|.|+|.|.. .+-+.+.|...
T Consensus 100 i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~ 179 (1381)
T KOG4221|consen 100 ISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ 179 (1381)
T ss_pred EeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccc
Confidence 888776 899999999772 33445555221
Q ss_pred -----------CeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeE----EecCCCcceeeecCCcEEEEE
Q psy5838 123 -----------RSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSI----IDKDTSTDLVVREQANVTLNC 185 (215)
Q Consensus 123 -----------~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~----~~~~~~~~~~~~~g~~~~l~C 185 (215)
-+..|.|.+++..|.|.|.|.+.+.. ..+..+.++|...|.+ .....+....+.+|+.+.|+|
T Consensus 180 pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 180 PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence 13459999999999999999997643 2355666777643322 112245556688999999999
Q ss_pred EecccCCCeEEEEeCCCccccccC
Q psy5838 186 KAQGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 186 ~~~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
.+.+.|.|++.|.+ ||..|..++
T Consensus 260 vvs~~p~p~v~Wlr-ng~~i~~ds 282 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLR-NGEKISVDS 282 (1381)
T ss_pred EecCCCCCceEEee-CCeeeeecc
Confidence 99999999999999 898888765
No 8
>KOG4222|consensus
Probab=99.56 E-value=2.1e-14 Score=122.38 Aligned_cols=173 Identities=23% Similarity=0.393 Sum_probs=122.1
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.....|.++.-+....+..|+.++|.|...+.+.++ +.|+|+ |...+. ..-...++...+..-+.|
T Consensus 27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPt-------i~w~k~-G~~~~~------~e~~shR~~lp~gsLf~l 92 (1281)
T KOG4222|consen 27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPT-------IEWYKD-GENVFK------GEPGSHRFLLPDGSLFLL 92 (1281)
T ss_pred cccCCCceEecchhhhccCCCCceeecCCCCCCCCc-------eecccC-CcccCC------CCCCCcceecCCccEEEE
Confidence 345578999999999999999999999999998888 999994 432110 001111222222222233
Q ss_pred EEccc--eecCCEEEEEEccC---------------------------------------------CCceEEEEcc----
Q psy5838 93 NIKNV--QESDRGWYMCQVNT---------------------------------------------NPRISLTYND---- 121 (215)
Q Consensus 93 ~i~~~--~~~d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~---- 121 (215)
.+..- ...|.|.|+|.+.| .|.+.+.|.+
T Consensus 93 ~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~p 172 (1281)
T KOG4222|consen 93 RLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKP 172 (1281)
T ss_pred ecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCc
Confidence 32221 12388999999874 2344455521
Q ss_pred -----------CCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEec
Q psy5838 122 -----------HRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ 188 (215)
Q Consensus 122 -----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~ 188 (215)
-....|.|.+++++|.|.|.|++++.. ..+....++|+.+|.+.. .+.+..+..|..+.+.|.+.
T Consensus 173 l~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~--rp~~~~v~~g~~~~f~c~v~ 250 (1281)
T KOG4222|consen 173 LDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWK--RPKDLAVLVGAAAEFDCRVG 250 (1281)
T ss_pred cccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccc--ccccceeecccccccccccC
Confidence 123458999999999999999997732 345556799999998775 34566788999999999999
Q ss_pred ccCCCeEEEEeCC
Q psy5838 189 GYPEPYVMWRRED 201 (215)
Q Consensus 189 ~~p~~~i~W~~~~ 201 (215)
|.|.|.+.|.+.+
T Consensus 251 GdP~P~Vrwkk~~ 263 (1281)
T KOG4222|consen 251 GDPQPTVRWKKDD 263 (1281)
T ss_pred CCCCCceeeeccC
Confidence 9999999999943
No 9
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.54 E-value=2e-13 Score=88.17 Aligned_cols=93 Identities=24% Similarity=0.328 Sum_probs=67.6
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.|...+..+.+..|+++.|.|.+.|.+.+. +.|+| ++..+. ...++.+...+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~-------v~W~k-dg~~l~--------~~~~~~~~~~~----------- 53 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPIT-------CTWMK-FRKQIQ--------EGEGIKIENTE----------- 53 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCc-------eEEEE-CCEEec--------CCCcEEEEecC-----------
Confidence 6788888999999999999999999998888 99999 555441 22233333221
Q ss_pred eecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 98 QESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
....|.|.++..+|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 54 -------------------------~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 54 -------------------------NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred -------------------------CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 112467888888888888898866 4556667778887665
No 10
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.53 E-value=3.7e-13 Score=99.71 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=50.6
Q ss_pred EEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-----cCCCeEEEEe
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-----YPEPYVMWRR 199 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~ 199 (215)
.|.|.+++.+|+|.|+|.+.+.. .....+.+.|..+ ..+..+.+|+++.|.|.+.+ .|.|.+.|++
T Consensus 99 ~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK 170 (227)
T PHA02826 99 NLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG--------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK 170 (227)
T ss_pred eEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC--------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence 47788888888888888886532 2233344444221 12345678999999999853 4578999999
Q ss_pred CCCccccccC
Q psy5838 200 EDGANLSYNG 209 (215)
Q Consensus 200 ~~~~~~~~~~ 209 (215)
||+.+..+.
T Consensus 171 -ng~~l~~~~ 179 (227)
T PHA02826 171 -NGNIVLYTD 179 (227)
T ss_pred -CCEECCCCC
Confidence 888776443
No 11
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.48 E-value=8.6e-13 Score=84.50 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=48.4
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
..++.+.+|+++.|+|.+.+.+.+. +.|++.++. ++.........+.|+.+.......+.|.|.+++.+|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~-------v~W~k~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G 75 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSS-------LQWSNTAQQ-TLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG 75 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCe-------EEEeccCcc-EEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE
Confidence 3578899999999999999988777 999996543 33322223334455554444333445555555555444
Q ss_pred EEEEEc
Q psy5838 104 WYMCQV 109 (215)
Q Consensus 104 ~Y~C~~ 109 (215)
.|+|.+
T Consensus 76 ~YtC~~ 81 (95)
T cd05882 76 EYTCSI 81 (95)
T ss_pred EEEEEE
Confidence 444443
No 12
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.46 E-value=8.9e-13 Score=84.31 Aligned_cols=79 Identities=29% Similarity=0.381 Sum_probs=54.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...|....+.+|+++.|.|.+.+.|.+. +.|+++ +..+ ..+.++.+.... ..+.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~-------v~W~k~-g~~l--------~~~~~~~~~~~~-~~~~L~i~ 64 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPT-------VTWMRE-GQII--------VSSQRHQITSTE-YKSTFEIS 64 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCE-------EEEEEC-CEEC--------CCCCcEEEEEcC-CeeEEEEC
Confidence 368888889999999999999999999999887 999995 4332 123344443322 23456666
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
+++.+|+|.|+|.+.|
T Consensus 65 ~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 65 KVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCCcccCEeEEEEEEc
Confidence 5555555555555544
No 13
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.41 E-value=4.1e-12 Score=81.55 Aligned_cols=79 Identities=29% Similarity=0.432 Sum_probs=46.2
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
+.++.+.+|++++|.|.+.+.+.+. +.|++.++..+ .........++|+.........++|.|.+++.+|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~-------v~W~~~~~~~l-~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG 75 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTS-------LQWSNPAQQTL-YFDDKKALRDNRIELVRASWHELSISISDVSLSDEG 75 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceE-------EEEeCCCCeEE-EEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE
Confidence 4578999999999999999887776 99998544333 222222223445544332223344555554444444
Q ss_pred EEEEEcc
Q psy5838 104 WYMCQVN 110 (215)
Q Consensus 104 ~Y~C~~~ 110 (215)
.|+|.+.
T Consensus 76 ~Y~C~~~ 82 (95)
T cd07701 76 QYTCSLF 82 (95)
T ss_pred EEEEEeE
Confidence 4444443
No 14
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=2.9e-12 Score=81.93 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|+.+.+.+|+++.|.|.+.+.|.|. +.|+|++
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~-------v~W~k~g 39 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPE-------VSWLKND 39 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCe-------EEEEECC
Confidence 5678899999999999999998887 9999943
No 15
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.39 E-value=2.9e-12 Score=82.31 Aligned_cols=37 Identities=14% Similarity=0.360 Sum_probs=29.4
Q ss_pred CCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecCCccE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~~~~~ 66 (215)
.|....+..|++++|.|.+.+.|. +. +.|++.++..+
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~-------i~W~~~~g~~l 43 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKD-------ISWFSPNGEKL 43 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCE-------EEEECCCCcCc
Confidence 456678889999999999999874 56 99998555543
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=4.6e-12 Score=80.25 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=35.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|.|...+.+..+.+|+++.|.|.+.|.|.|. +.|+|++
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~-------v~W~k~~ 39 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPV-------IRWRKIL 39 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCE-------EEEEECC
Confidence 47788888899999999999999999999887 9999954
No 17
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.38 E-value=3e-12 Score=81.49 Aligned_cols=76 Identities=30% Similarity=0.471 Sum_probs=52.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.|...+..+.+.+|+++.|.|.+.+.+.+. +.|+++ +..+ ..+.++.....+ ....|.|.++
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~-------v~W~~~-~~~l--------~~~~~~~~~~~~-~~~~L~I~~v 63 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPT-------VTWYKN-GRPL--------TSSQRYQIESDG-GSSSLTIKNV 63 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSE-------EEEEET-TEEE--------ESSSSEEEEEET-TEEEEEESSE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCc-------cccccc-ccce--------eeeeeeeeeccc-ceeEEccCCC
Confidence 6788888999999999999999999987777 999995 5544 234555555443 4445555555
Q ss_pred eecCCEEEEEEcc
Q psy5838 98 QESDRGWYMCQVN 110 (215)
Q Consensus 98 ~~~d~G~Y~C~~~ 110 (215)
..+|+|.|+|.+.
T Consensus 64 ~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 64 TREDAGTYTCVAS 76 (90)
T ss_dssp SGGGSEEEEEEEE
T ss_pred ChhhCEEEEEEEE
Confidence 4444444444443
No 18
>KOG4194|consensus
Probab=99.38 E-value=7.4e-12 Score=101.43 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=98.5
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|+|+..|+++++..|+.+.|.|.+.|.|.|. +.|.|..+...-. ....|..+..++ -.+.
T Consensus 609 V~~~PsFtktP~dltl~tg~mArl~CaAtG~P~Pe-------IawqkdggtdFPA------A~eRRl~Vmped---d~f~ 672 (873)
T KOG4194|consen 609 VNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPE-------IAWQKDGGTDFPA------ARERRLHVMPED---DVFF 672 (873)
T ss_pred eeccCccccCcccceeecccceeeeeeccCCCCcc-------eeehhcCCCCCch------hhhheeeecCCC---CEEE
Confidence 34589999999999999999999999999999998 9999955442221 223455555543 2899
Q ss_pred EccceecCCEEEEEEccC-------------------------------------------CCceEEEEccC--------
Q psy5838 94 IKNVQESDRGWYMCQVNT-------------------------------------------NPRISLTYNDH-------- 122 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~~-------- 122 (215)
|.|++.+|+|.|+|.|.+ .+.+.+.|.+.
T Consensus 673 Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~ 752 (873)
T KOG4194|consen 673 ITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITE 752 (873)
T ss_pred EecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEee
Confidence 999999999999999873 11244444221
Q ss_pred ------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEE
Q psy5838 123 ------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSII 165 (215)
Q Consensus 123 ------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~ 165 (215)
.+--|.+.+...+|+|.|+|++.+ .+.....+.+.+...+...
T Consensus 753 rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~ 802 (873)
T KOG4194|consen 753 RHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCR 802 (873)
T ss_pred cccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcc
Confidence 233377888889999999999965 3555666666666555433
No 19
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.38 E-value=1.4e-11 Score=78.49 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=56.3
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
.+++++.+|++++|.|.+.+..... +.|++.+...+. ........+.|+.......+.++|.|.+++.+|+|
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~-------v~w~~~~~~~i~-~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G 75 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSV-------IQLLNPNRQTIY-FRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG 75 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccE-------EEEEecCCcEEE-ecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE
Confidence 3578999999999999999876555 899985543333 33334446778877654445666777766666666
Q ss_pred EEEEEccCCCc
Q psy5838 104 WYMCQVNTNPR 114 (215)
Q Consensus 104 ~Y~C~~~~~~~ 114 (215)
.|+|++...|.
T Consensus 76 ~Y~Cqv~t~p~ 86 (95)
T cd05881 76 RYFCQLYTDPP 86 (95)
T ss_pred EEEEEEEcccC
Confidence 66666655443
No 20
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=7.7e-12 Score=80.93 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|++.. +.+..+.+|++++|.|.+.+.|.|. +.|++..
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~-------i~W~k~~ 39 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPE-------ITWKRAS 39 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCe-------EEEEECC
Confidence 466654 5689999999999999999998887 9999953
No 21
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=4.5e-12 Score=80.67 Aligned_cols=37 Identities=16% Similarity=0.429 Sum_probs=30.0
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
..+..+.+.+|+++.|.|.+.|.|. . +.|++.++..+
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~-------v~W~k~~g~~~ 41 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-S-------IDWYNPQGEKI 41 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-e-------EEEEeCCCeEe
Confidence 4467788999999999999999876 5 99998655543
No 22
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.33 E-value=1.2e-11 Score=78.97 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
..|....+..|+++.|.|.+.+.| +. +.|++.++..+
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p-~~-------i~W~~~~~~~~ 41 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP-KD-------ISWFSPNGEKL 41 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC-Ce-------EEEECCCCCEe
Confidence 346678899999999999999875 35 99998655543
No 23
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.31 E-value=2.1e-11 Score=76.78 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.4
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+..|+++.|.|.+.|.|.|. +.|+|++
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~-------v~W~k~~ 33 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPT-------VTWSRGD 33 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCe-------EEEEECC
Confidence 357889999999999999999998 9999943
No 24
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.30 E-value=2.4e-11 Score=77.63 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|..+.+.+|+++.|.|.+.+.|.+. +.|++++
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~-------i~W~k~~ 39 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPE-------VIWFKND 39 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCe-------EEEEECC
Confidence 36688999999999999999888777 9999954
No 25
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.28 E-value=1.7e-11 Score=75.01 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=37.1
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.|.+.+.|.|. +.|+|+ +..+. ....|+.+..++....+|.|.+++.+|+|.|+|.|.|
T Consensus 1 v~l~C~v~G~P~P~-------i~W~k~-~~~i~-------~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N 62 (75)
T cd05892 1 VKLECQISAIPPPK-------IFWKRN-NEMVQ-------YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVN 62 (75)
T ss_pred CEEEEEEEecCCCe-------EEEEEC-CEECc-------CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEc
Confidence 57999999999998 999994 44331 1123555444332233555555555555555555444
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=3.4e-11 Score=75.75 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=31.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|...|.+..+..|+++.|.|.+.+.|.+. +.|+|++
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~-------v~W~k~g 37 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPA-------YRWLKNG 37 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCE-------EEEEECC
Confidence 56677889999999999999999998887 9999943
No 27
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.27 E-value=5.2e-11 Score=76.86 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=32.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.|+|...+....+..|++++|.|.+.|.|.|. +.|+++
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~-------v~W~~~ 39 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPS-------ITWRTS 39 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCE-------EEEEEC
Confidence 57777777777777799999999999988887 999994
No 28
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.27 E-value=7.3e-11 Score=75.89 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
++.+.+.+|++++|.|.+.+.+.+. +.|++..+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~~p~~~ 37 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSS-------LQWSNPNQQ 37 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCce-------EEEeCCCCc
Confidence 3578899999999999998766555 999875443
No 29
>PHA03376 BARF1; Provisional
Probab=99.26 E-value=2e-10 Score=80.16 Aligned_cols=142 Identities=20% Similarity=0.410 Sum_probs=77.4
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC---CccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD---TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD 101 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 101 (215)
..+.+..|+++.|.|.........+++ |.|+|.. .+.+++.... +..-...+. + +...+ .+|
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~Mr----IrWqKs~p~~~~VvL~~~gg-----dVv~~QmEy-R-GrtD~----~~~ 83 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIE----VSWFKLGPGEEQVLIGRMHH-----DVIFIEWPF-R-GFFDI----HRS 83 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceE----EEEEecCCCCCCEEEEEcCC-----eeeeeeecc-c-cEEEE----Eec
Confidence 468889999999999998554445565 9999942 2223322110 000000000 0 01111 011
Q ss_pred CEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceee-EEEEEcCCeEEecCCCcceeeecCCc
Q psy5838 102 RGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG-YLQVVVPPSIIDKDTSTDLVVREQAN 180 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~l~v~~~p~~~~~~~~~~~~~~~g~~ 180 (215)
+ .+.+|.|.+++.+|.|.|+|.++.......+. .+.+..|....+.....+ ......
T Consensus 84 ~--------------------gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~d--Fp~~~~ 141 (221)
T PHA03376 84 A--------------------NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ--FPDFSV 141 (221)
T ss_pred C--------------------CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEecccc--CCCCCe
Confidence 1 23457788888888888888885433222221 233322222222211111 112567
Q ss_pred EEEEEEecccCCCeEEEEeCCCc
Q psy5838 181 VTLNCKAQGYPEPYVMWRREDGA 203 (215)
Q Consensus 181 ~~l~C~~~~~p~~~i~W~~~~~~ 203 (215)
..+.|.+.|+|.|.+.|.-+.|.
T Consensus 142 ~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 142 LTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred eEEEEecCCcCCchheeccccCC
Confidence 78899988899999999986554
No 30
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.26 E-value=1.8e-11 Score=74.57 Aligned_cols=60 Identities=27% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|+++.|.|.+.+.|.+. +.|+|+ +..+. .+.|+.+..+ ++|.|.+++.+|+|.|+|.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~-------v~W~k~-~~~l~--------~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~A~N 60 (73)
T cd05852 1 GGRVIIECKPKAAPKPK-------FSWSKG-TELLV--------NNSRISIWDD----GSLEILNITKLDEGSYTCFAEN 60 (73)
T ss_pred CCeEEEEEecceeCCCE-------EEEEeC-CEecc--------cCCCEEEcCC----CEEEECcCChhHCEEEEEEEEC
Confidence 78999999999998887 999994 44331 2334443222 2555555555555555554443
No 31
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.26 E-value=1.7e-10 Score=74.80 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccE
Q psy5838 24 IPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
...+.+.+|+++.|.|.+.+ +|.|. +.|+| ++.++
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~-------v~W~K-dg~~i 45 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPH-------INWTY-DNRTL 45 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCc-------cEEEe-CCeeC
Confidence 35788999999999999999 88887 99999 55544
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.25 E-value=7.5e-11 Score=75.04 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.0
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..++....+.+|+++.|.|.+.|.|.|. +.|++++
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~-------v~W~~~g 38 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPK-------VEWIIAG 38 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCe-------EEEEECC
Confidence 4456677799999999999999999888 9999954
No 33
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.25 E-value=1.6e-10 Score=73.16 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=55.2
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|+.+.|.|.+.+.+.+. +.|++++ ..+. ....|+.+....... +
T Consensus 1 g~~~~l~C~~~g~p~~~-------i~W~k~~-~~i~-------~~~~r~~~~~~~~~~--~------------------- 44 (88)
T cd05735 1 GQKKEMSCTAHGEKPII-------VRWEKED-RIIN-------PEMSRYLVSTKEVGD--E------------------- 44 (88)
T ss_pred CCeEEEEEEEECCCCCE-------EEEeeCC-EECC-------CCCCcEEEEEecCCC--c-------------------
Confidence 78999999999988777 9999943 3221 111233322110000 0
Q ss_pred CCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCe
Q psy5838 112 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPS 163 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~ 163 (215)
....|.|.++..+|+|.|+|.|.+ .+.....+.|.|..+|.
T Consensus 45 -----------~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 45 -----------VISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred -----------EEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 112477888889999999999966 46666777788876653
No 34
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.24 E-value=8.1e-11 Score=75.80 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|+|. .+.+..+.+|+++.|.|.+.+.|.+. +.|++++
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~-------v~W~~~~ 39 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPE-------ITWRRAT 39 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCc-------EEEEECC
Confidence 46665 34578889999999999999988887 9999954
No 35
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=6.2e-11 Score=73.09 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=45.7
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
|.+...|+...+.+|++|+|.|.+.+.+. .. +.|+|+ +..+. . ....|.|.+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~-------~~W~kn-g~~l~--------~-----------~~~~l~i~~ 53 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNS-------TQWYHN-GKLLE--------T-----------TTNSYRIRA 53 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCcc-------EEEEEC-CEEee--------c-----------cCCeEEEee
Confidence 45666788899999999999999988654 34 899994 44321 0 122566666
Q ss_pred ceecCCEEEEEEccC
Q psy5838 97 VQESDRGWYMCQVNT 111 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~ 111 (215)
+ .+|+|.|+|.|.+
T Consensus 54 ~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 54 A-NNDSGEYRCQTQG 67 (78)
T ss_pred c-ccCCEEeEEECCC
Confidence 6 6676777776654
No 36
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=1.1e-10 Score=73.86 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.3
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
|.+...+....+.+|+++.|.|.+.+.|.+. +.|++++.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~-------v~W~k~~~ 40 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQ-------IKWRKVDG 40 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCE-------EEEEECCC
Confidence 3445557788899999999999999988887 99999544
No 37
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.22 E-value=3e-11 Score=73.96 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=22.3
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|+++.|.|.+.+.|.|. +.|+|++
T Consensus 1 eG~~v~l~C~~~g~P~p~-------i~W~k~g 25 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV-------IAWTKGG 25 (74)
T ss_pred CCCeEEEEeECCEecCCE-------EEEEECC
Confidence 589999999999999988 9999943
No 38
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.21 E-value=5.6e-11 Score=72.79 Aligned_cols=62 Identities=19% Similarity=0.457 Sum_probs=35.0
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.|.+.|.|.|. +.|+|++ ..+. ....|+.+...+.....|.|.++..+|+|.|+|.|.|
T Consensus 1 v~l~C~v~G~P~P~-------v~W~k~~-~~l~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 62 (75)
T cd05893 1 VRLECRVSGVPHPQ-------IFWKKEN-ESLT-------HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKN 62 (75)
T ss_pred CEEEEEEeEecCCE-------EEEEECC-EECC-------CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 57999999999998 9999954 3321 1123444433321222455555555555555544443
No 39
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.21 E-value=9.7e-11 Score=72.60 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
|....+.+|+.+.|.|.+.+. .+. +.|+| ++..+. .+.++.+.. ..|.|.+++.+|+|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~-------v~W~k-~g~~l~--------~~~~~~~~~-----~~L~I~~~~~~DsG 58 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQS-------INWTK-DGVQLG--------ENNRTRITG-----EEVQIKDAVPRDSG 58 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-Cce-------EEEee-CCcCCC--------CCceEEEeC-----CEEEECCCChhhCE
Confidence 356788899999999999986 344 99999 455441 222333321 14565555555555
Q ss_pred EEEEEccC
Q psy5838 104 WYMCQVNT 111 (215)
Q Consensus 104 ~Y~C~~~~ 111 (215)
.|+|.+.+
T Consensus 59 ~Y~C~a~n 66 (79)
T cd04973 59 LYACVTSS 66 (79)
T ss_pred EEEEEEeC
Confidence 55555543
No 40
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.20 E-value=3.3e-10 Score=72.83 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=26.3
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
....+..|+++.|.|.+.+.|.+. +.|+++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~-------v~W~k~ 40 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPT-------MTWTKD 40 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCE-------EEEEEC
Confidence 356788999999999999988887 999994
No 41
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.19 E-value=4.4e-10 Score=72.73 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=35.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
+|.|...+..+.+.+|+++.|.|.+.+.|.+. +.|+|+ +..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~-------i~W~k~-g~~ 41 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPT-------IQWLKN-GQP 41 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCE-------EEEEEC-CEE
Confidence 47888888999999999999999999988887 999994 443
No 42
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.19 E-value=1.2e-10 Score=74.18 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.+..+.+|++++|.|.+.+. .+. +.|++++
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~-------i~W~kng 40 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATY-------IWWVNNG 40 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCE-------EEEEECC
Confidence 346788999999999999988 776 9999943
No 43
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.18 E-value=1.1e-10 Score=73.50 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=26.9
Q ss_pred CCCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEec
Q psy5838 23 PIPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~ 61 (215)
.|....+.+|+++.|.|.+ .+.+.+. +.|+|+
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~-------i~W~k~ 34 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPT-------VSWRKD 34 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCE-------EEEEEC
Confidence 3567888999999999998 6777777 999994
No 44
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.18 E-value=1.7e-10 Score=73.98 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=32.3
Q ss_pred CcccCCCCceEEE---eCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 18 PHFAEPIPNVTVT---VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 18 p~~~~~~~~~~~~---~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|.|+..|.++.+. .|+++.|.|.+.+.|.+. +.|+|+ +..
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~-------i~W~k~-g~~ 44 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPT-------YRWLRN-GTE 44 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCE-------EEEEEC-CeE
Confidence 6777777777664 478999999999999888 999994 443
No 45
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.18 E-value=1.6e-10 Score=73.70 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.0
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.+.+|++|+|+|.+.+.+.+. +.|++.+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~-------i~W~~~~ 30 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQ-------FHWKNSN 30 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcE-------EEEEECC
Confidence 5678999999999998776665 9999743
No 46
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.17 E-value=1.5e-10 Score=71.62 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=39.4
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|+++.|.|.+.+.|.|. +.|+++++. + ....++.+.... ..+.|.|.+++.+|+|.|+|.|.+
T Consensus 1 G~~v~l~C~~~g~P~p~-------v~W~~~~~~-~--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N 63 (78)
T cd05743 1 GETVEFTCVATGVPTPI-------INWRLNWGH-V--------PDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAIN 63 (78)
T ss_pred CCEEEEEEEEEEecCCE-------EEEEECCeE-C--------CCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEe
Confidence 78999999999988887 999995432 2 122344333222 334566666666666666665544
No 47
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.16 E-value=1.3e-10 Score=70.90 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=36.7
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|+++.|.|.+.+.|.+. +.|+++ +..+ ....++.+... +.|.|.+++.+|+|.|+|.+.+
T Consensus 1 G~~v~L~C~~~g~P~p~-------v~W~k~-~~~~--------~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N 60 (73)
T cd04969 1 GGDVIIECKPKAAPKPT-------ISWSKG-TELL--------TNSSRICIWPD----GSLEILNVTKSDEGKYTCFAEN 60 (73)
T ss_pred CCeEEEEEeeeEcCCCE-------EEEEEC-CEEc--------ccCCCEEECCC----CeEEEccCChhHCEEEEEEEEC
Confidence 78999999999988887 999994 4433 12334433221 2455555555555555554443
No 48
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.15 E-value=4.7e-10 Score=71.35 Aligned_cols=82 Identities=27% Similarity=0.396 Sum_probs=49.4
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|+++.|.|.+.+.|.+. +.|+|++...++... .......|+.+..
T Consensus 1 G~~v~L~C~~~g~P~p~-------v~W~k~g~~~~~~~~-~~~~~~~r~~v~~--------------------------- 45 (90)
T cd05726 1 GRTVTFQCEATGNPQPA-------IFWQKEGSQNLLFSY-QPPQSSSRFSVSQ--------------------------- 45 (90)
T ss_pred CCEEEEEEECCccCCCE-------EEEEeCCCcceeecc-cCCCCCCeEEECC---------------------------
Confidence 78999999999988887 999995443221110 0001112222211
Q ss_pred CCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEc
Q psy5838 112 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVV 160 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~ 160 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..
T Consensus 46 ------------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 46 ------------TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred ------------CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 11366777777888888888865 45555566666654
No 49
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.15 E-value=2.1e-10 Score=70.31 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|.|.|.+.+.|.|. +.|+|+ +..
T Consensus 1 v~L~C~v~G~P~P~-------v~W~k~-~~~ 23 (75)
T cd05744 1 VRLECRVSAIPPPQ-------IFWKKN-NEM 23 (75)
T ss_pred CEEEEEEeecCCCe-------EEEEEC-CEE
Confidence 57999999999998 999994 443
No 50
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.13 E-value=1.9e-10 Score=73.54 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=30.5
Q ss_pred CcccCCCCceEEEeCC---cEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGR---DALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~---~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|.|...|..+.+.+|. .+.|.|.+.|.|.+. +.|+|++
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~-------i~W~k~~ 42 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPI-------YKWRKNN 42 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCE-------EEEEECC
Confidence 6777777777665544 799999999999888 9999954
No 51
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.13 E-value=2.7e-10 Score=71.63 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=24.8
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+..|+++.|.|.+.+.|.+. +.|+|++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~-------i~W~k~g 32 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPT-------MRWLKNG 32 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCE-------EEEEECC
Confidence 4577899999999999988877 9999943
No 52
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.12 E-value=1.9e-09 Score=71.01 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=61.3
Q ss_pred CCCcccCCCCceEE-E---eCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 16 LMPHFAEPIPNVTV-T---VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 16 ~~p~~~~~~~~~~~-~---~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
++|.|..++....+ . .|.++.|.|.+.+.|.+. +.|++ ++..+. ..+.++........
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~-------i~W~k-~g~~l~-------~~~~r~~~~~~~~~--- 64 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQ-------FRWAK-NGVPLD-------LGNPRYEETTEHTG--- 64 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCE-------EEEEE-CCEECC-------CCCCeEEEEeeccC---
Confidence 46777777652222 2 467899999999988887 99999 444331 11223322211000
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccC-CCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
......|.|.++. .+|.|.|+|.|.+ .+.....+.|.+..+|
T Consensus 65 -----------------------------~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 65 -----------------------------TVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred -----------------------------ccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 0011347788876 5889999999866 4556667777776655
No 53
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.11 E-value=9.1e-10 Score=71.38 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=28.6
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
...+..|+.+.|.|.+.+.|.|. +.|+| ++.++
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~-------v~W~k-dg~~l 44 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQ-------IRWLK-DNRTL 44 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCc-------eEEEE-CCEEC
Confidence 67788899999999999999998 99999 55554
No 54
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.11 E-value=1.1e-09 Score=72.28 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.++..+.+.+|++|+|.|.+.+..... +.|++..
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~-------v~W~k~~ 36 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYY-------LFWYRQY 36 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccE-------EEEEEEC
Confidence 456789999999999999998764444 9999853
No 55
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.10 E-value=4.5e-10 Score=68.07 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.3
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|.|.|.+.|.|.|. +.|+|++
T Consensus 1 ~v~l~C~~~G~P~p~-------v~W~k~g 22 (71)
T cd05723 1 DVIFECEVTGKPTPT-------VKWVKNG 22 (71)
T ss_pred CEEEEEEEEEeCCCE-------EEEEECC
Confidence 589999999999888 9999954
No 56
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.10 E-value=2.3e-09 Score=67.35 Aligned_cols=37 Identities=38% Similarity=0.372 Sum_probs=27.1
Q ss_pred EEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
.|.|.+++..|+|.|+|.|.+ .+...+.+.|.|..+|
T Consensus 48 ~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 48 DLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 366778888888888888865 4556667778777665
No 57
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.09 E-value=1.2e-09 Score=72.20 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..|..+.+.+|++|+|.|.+.+ ..+. +.|||..
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~-------v~Wykq~ 35 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDN-------MYWYRQD 35 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCE-------EEEEEEC
Confidence 4567889999999999999987 4444 9999974
No 58
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.09 E-value=7.9e-10 Score=67.58 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=19.1
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
++.|.|.+.|.|.|. +.|+|++
T Consensus 1 ~~~l~c~~~G~P~p~-------v~W~k~g 22 (74)
T cd05748 1 SVRLEVPISGRPTPT-------VTWSKDG 22 (74)
T ss_pred CEEEEeeEeeeCCCe-------EEEEECC
Confidence 478999999999998 9999943
No 59
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.09 E-value=8.6e-10 Score=67.77 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|+++.|.|.+.+.|.|. +.|++ ++..
T Consensus 1 G~~v~l~C~~~G~P~p~-------i~W~k-~g~~ 26 (76)
T cd05867 1 GETARLDCQVEGIPTPN-------ITWSI-NGAP 26 (76)
T ss_pred CCeEEEEEEeeEeCCCe-------EEEEE-CCEE
Confidence 78999999999998887 99999 4443
No 60
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.09 E-value=6e-10 Score=71.39 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred CcccCCCCceEEEeC---CcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 18 PHFAEPIPNVTVTVG---RDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 18 p~~~~~~~~~~~~~G---~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|.|...|..+.+.+| ++++|.|.+.+.|.+. +.|+++ +..
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~-------i~W~~~-g~~ 44 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPAT-------YRWKMN-GTE 44 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCE-------EEEEEC-CEE
Confidence 667777888877666 5799999999988887 999994 443
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.07 E-value=5.3e-10 Score=71.04 Aligned_cols=76 Identities=28% Similarity=0.480 Sum_probs=50.6
Q ss_pred CCcccCC-CCceEEEeCCcEEEEEE-eeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 17 MPHFAEP-IPNVTVTVGRDALLACV-VDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 17 ~p~~~~~-~~~~~~~~G~~v~L~C~-~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
.|.|... ...+.+.+|+.+.|.|. ..+.|.+. +.|+++....+ ..+.|+.... +|+|.|
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~-------i~W~~~~~~~i--------~~~~Ri~~~~----~GnL~f 62 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLR-------IYWMNSDLLHI--------TQDERVSMGQ----NGNLYF 62 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCE-------EEEECCCCccc--------cccccEEECC----CceEEE
Confidence 3556555 46889999999999997 57788887 99998433222 2345554433 247777
Q ss_pred ccceecCCE-EEEEEccC
Q psy5838 95 KNVQESDRG-WYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G-~Y~C~~~~ 111 (215)
.+++.+|+| .|.|.|.+
T Consensus 63 s~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 63 ANVEEQDSHPDYICHAHF 80 (95)
T ss_pred EEEehhhCCCCeEEEEEc
Confidence 777776666 56666554
No 62
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.07 E-value=8e-10 Score=69.28 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=45.4
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
.|....+..|+++.|.|...+ +.+. +.|++ ++..+.. ...++.+. .+.|.|.+++.+|+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~-------i~W~~-ng~~i~~-------~~~r~~~~-----~~~L~I~nv~~~Ds 60 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLAR-------VVWKF-DGKVLTP-------ESAKYLLY-----RDGLLIFNASEADA 60 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCe-------EEEEE-CCEECCC-------CCceEEEE-----CCcEEEeCCCHHHC
Confidence 456788999999999999764 3445 99999 4554321 11233321 12577777777777
Q ss_pred EEEEEEccCC
Q psy5838 103 GWYMCQVNTN 112 (215)
Q Consensus 103 G~Y~C~~~~~ 112 (215)
|.|+|.+.+.
T Consensus 61 G~Y~C~a~e~ 70 (87)
T cd05873 61 GRYQCLSVEK 70 (87)
T ss_pred EEEEEEEEec
Confidence 7777766654
No 63
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.06 E-value=8.2e-10 Score=70.94 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=32.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
|...|....+.+|+++.|.|.+.+.|.+. +.|+| ++..+
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~-------i~W~k-~g~~l 40 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPK-------IEWKK-DGVLL 40 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCE-------EEEEE-CCeEC
Confidence 45567788889999999999999988887 99999 55443
No 64
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.06 E-value=4.3e-10 Score=71.49 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
|++++|.|.+.+.|.|. +.|+|.
T Consensus 1 G~~v~l~C~v~g~P~P~-------i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH-------IQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCe-------EEEEEe
Confidence 78999999999999988 999995
No 65
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=1.6e-09 Score=70.02 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=29.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~ 62 (215)
|.+ ..+....+.+|+++.|.|.+.+.|.| . +.|++++
T Consensus 3 p~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~-------v~W~~~~ 40 (98)
T cd05758 3 PII-TSEATQYAILGDKGRVECFIFSTPPPDR-------IVWTWKE 40 (98)
T ss_pred CeE-cCCCcEEEeCCCcEEEEEEEcccCCCCE-------eEEEECC
Confidence 344 34567788999999999999998777 5 8999943
No 66
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.05 E-value=1.9e-09 Score=67.28 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=26.5
Q ss_pred EEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 127 LNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
|.|.+++.+|+|.|+|.|.+ .......+.|.|..||
T Consensus 49 L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 49 LMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred EEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 66777777888888888865 3455666778887776
No 67
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.05 E-value=8.7e-10 Score=67.38 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|+++.|.|.+.+.|.+. +.|++.++..
T Consensus 1 G~~~~l~C~~~g~P~p~-------v~W~~~~~~~ 27 (74)
T cd05764 1 GQRATLRCKARGDPEPA-------IHWISPDGKL 27 (74)
T ss_pred CCeEEEEEEccCcCCCE-------EEEEeCCCEE
Confidence 78999999999988887 9999855543
No 68
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.05 E-value=2.3e-09 Score=73.85 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=56.8
Q ss_pred EEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDG 202 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~ 202 (215)
+|.|.+++..|+|.|.|.+.+. +.....+.|.|..+|.+.... .......|+.+.|.|.+.|+ |+ +.+.|++ +|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~-~g 78 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPLDVQVEWTR-EP 78 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeC--CCceeecCCcEEEEEEECCCCCCCeEEEEEE-CC
Confidence 4788999999999999998653 455666788898899876542 22334478999999999985 65 3899999 55
Q ss_pred c
Q psy5838 203 A 203 (215)
Q Consensus 203 ~ 203 (215)
.
T Consensus 79 ~ 79 (139)
T cd05771 79 P 79 (139)
T ss_pred C
Confidence 3
No 69
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.04 E-value=3.7e-09 Score=66.40 Aligned_cols=37 Identities=35% Similarity=0.366 Sum_probs=25.4
Q ss_pred EEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
.|.|.+++..|+|.|+|.+.+ .+.....+.|.|..||
T Consensus 48 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 48 DLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred eEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 366777777788888888765 3445566677777665
No 70
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.04 E-value=4.4e-10 Score=67.73 Aligned_cols=57 Identities=18% Similarity=0.444 Sum_probs=34.1
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.|.+.+.|.|. +.|+| ++..+. ...++.+.. .+.|.|.+++.+|+|.|+|.|.+
T Consensus 1 v~L~C~~~g~P~p~-------i~W~k-~g~~~~--------~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N 57 (69)
T cd05746 1 VQIPCSAQGDPEPT-------ITWNK-DGVQVT--------ESGKFHISP----EGYLAIRDVGVADQGRYECVARN 57 (69)
T ss_pred CEeEecceEeCCCE-------EEEEE-CCEECC--------CCCCEEECC----CCEEEECcCChhhCEEEEEEEEC
Confidence 57999999999887 99999 444331 122333221 22566655555555555555544
No 71
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.04 E-value=7.5e-10 Score=70.38 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
|+++.|.|.+.+.|.|. +.|+|.
T Consensus 1 G~~v~L~C~~~g~P~P~-------i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH-------IQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCE-------EEEEEe
Confidence 78999999999998887 999984
No 72
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.04 E-value=8.5e-10 Score=66.47 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.5
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
++|.|.+.+.|.+. +.|+|+++
T Consensus 1 v~l~C~~~g~P~p~-------v~W~k~~~ 22 (69)
T cd05725 1 VEFQCEVGGDPVPT-------VLWRKEDG 22 (69)
T ss_pred CEEEEECccCCCCE-------EEEEECCc
Confidence 57999999988887 99999643
No 73
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.04 E-value=1e-09 Score=68.12 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecCCc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~~~ 64 (215)
|...|.++.+..|+++.|.|.+.|.|.| . +.|+|+ +.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~-------I~W~k~-g~ 38 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVE-------ILWWQG-GS 38 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeE-------EEEEEC-CE
Confidence 4566788999999999999999999988 7 999994 44
No 74
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.00 E-value=2.2e-09 Score=64.02 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
+.|.|.+.+.|.|. +.|+| ++..+
T Consensus 1 ~~l~c~v~g~P~P~-------v~W~k-dg~~l 24 (67)
T cd05863 1 VKLPVKVAAYPPPE-------FQWYK-DGKLI 24 (67)
T ss_pred CEEEEEEEEeCCCE-------EEEEE-CCEEC
Confidence 47999999999998 99999 55543
No 75
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.00 E-value=1.9e-09 Score=68.96 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=25.9
Q ss_pred CceEEEeCCcEEEEEEeec-----cCCccceeeeEEEEEEecCC
Q psy5838 25 PNVTVTVGRDALLACVVDN-----LKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~-----~~~~~~~~~~~~v~W~~~~~ 63 (215)
....+.+|+++.|.|.+.+ .+.+. +.|+|++.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~-------v~Wyk~~~ 43 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLN-------LTWYKSDG 43 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCce-------EEEEEcCC
Confidence 4567789999999999998 46666 99999653
No 76
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.00 E-value=2.1e-09 Score=66.02 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
|+++.|.|.+.+.|.|. +.|+| ++..+
T Consensus 1 g~~~~l~C~a~G~P~P~-------i~W~k-~g~~i 27 (76)
T cd05868 1 GEDGTLICRANGNPKPS-------ISWLT-NGVPI 27 (76)
T ss_pred CCCEEEEEEeeEeCCCe-------EEEEE-CCEEc
Confidence 78999999999999998 99999 55443
No 77
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.99 E-value=5.4e-09 Score=68.55 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=46.2
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCC--cc--EEEeeec-eeeeCCceEEEEcCCceEEEEE
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDT--QT--ILSIHHN-VITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|..+.+.+|++|+|.|.+.+.. ... +.|||... .+ ++..... ......|+..... .....|.|
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~-------~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I 75 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNY-------LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS-GTDFTLTI 75 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCc-------EEEEEECCCCCcEEEEECccccCCCCCCCEEEecc-CCEEEEEE
Confidence 4456778999999999999987543 333 89998642 11 1111110 0011234443322 24455666
Q ss_pred ccceecCCEEEEEEcc
Q psy5838 95 KNVQESDRGWYMCQVN 110 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~ 110 (215)
.+++.+|+|.|.|.+.
T Consensus 76 ~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 76 SRVEPEDAAVYYCQQY 91 (106)
T ss_pred CCCChHHCEEEEEEEe
Confidence 6666666666666554
No 78
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.99 E-value=1.5e-08 Score=65.69 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=20.2
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|++|+|+|.+.......... +.|++.....
T Consensus 1 G~~v~L~C~~~~~~~~~~~~----v~W~k~~~~~ 30 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHME----VRWFRSQFSP 30 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeE----EEEEECCCce
Confidence 78999999997443333222 8899965443
No 79
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.99 E-value=1.5e-09 Score=66.33 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
++|.|.+.|.|.|. +.|+|++
T Consensus 1 a~l~C~~~G~P~p~-------v~W~k~~ 21 (74)
T cd05738 1 ATMLCAASGNPDPE-------ITWFKDF 21 (74)
T ss_pred CEEEEEEeEecCCE-------EEEEECC
Confidence 47999999999888 9999943
No 80
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.99 E-value=2.3e-09 Score=66.75 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=24.6
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.+..|+++.|.|.+.+.|.+. +.|++++
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~-------i~W~k~~ 32 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPD-------ITWLKDN 32 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCc-------EEEEECC
Confidence 4567899999999999888887 9999954
No 81
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=5.1e-09 Score=68.43 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=22.7
Q ss_pred eEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 27 VTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
+.+.+|++|+|.|.+... .... +.|++..
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~~ 30 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYY-------IFWYRQK 30 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcce-------EEEEEEC
Confidence 357799999999999976 3333 8999964
No 82
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.98 E-value=2.1e-09 Score=66.82 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
|+++.|.|.+.+.|.+. +.|+|+
T Consensus 1 G~~v~l~C~~~g~P~p~-------v~W~k~ 23 (81)
T cd05765 1 GETASFHCDVTGRPPPE-------ITWEKQ 23 (81)
T ss_pred CCcEEEEeeccccCCCc-------EEEEec
Confidence 78999999999998887 999995
No 83
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.97 E-value=1.4e-09 Score=66.77 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
|+++.|.|.+.+.|.|. +.|++ ++..
T Consensus 1 G~~~~l~C~~~g~P~p~-------i~W~~-~g~~ 26 (76)
T cd04978 1 GETGRLDCEAEGIPQPT-------ITWRL-NGVP 26 (76)
T ss_pred CCeEEEEEEceeeCCCE-------EEEEE-CCEE
Confidence 78999999999998887 99999 4443
No 84
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.97 E-value=7.3e-09 Score=61.29 Aligned_cols=62 Identities=27% Similarity=0.363 Sum_probs=39.3
Q ss_pred CCcEEEEEEe-eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceE-EEEEccceecCCEEEEEEc
Q psy5838 32 GRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSW-FLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 32 G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~ 109 (215)
|++++|.|.+ .+.+... +.|++++....... ............ .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~-------~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTT-------VTWSKNGQSLPEGS---------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSE-------EEEEETTTTTSEEE---------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcE-------EEEEECCccccCcc---------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 5555555 99999655432211 111111111111 3899999999999999975
No 85
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.97 E-value=8.9e-09 Score=68.66 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=26.2
Q ss_pred CCCCceEEEeCCcEEEEEEeec--cCCccceeeeEEEEEEec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDN--LKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~--~~~~~~~~~~~~v~W~~~ 61 (215)
..|..+.+.+|++|+|.|.+.+ .+.+. +.|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~-------v~Wyrq 37 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTY-------IHWYRQ 37 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccE-------EEEEEE
Confidence 4567888999999999999976 33343 999996
No 86
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.96 E-value=2.7e-09 Score=68.74 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=18.8
Q ss_pred EeCCcEEEEEEeec-cCCccceeeeEEEEEEecC
Q psy5838 30 TVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 30 ~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~ 62 (215)
..|++|+|+|.+.. ..... +.|+++.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~-------v~W~~~~ 28 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIES-------ITWSFNT 28 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEE-------EEEecCC
Confidence 36999999999864 22222 9999963
No 87
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.96 E-value=1.3e-08 Score=79.92 Aligned_cols=64 Identities=17% Similarity=0.399 Sum_probs=43.8
Q ss_pred CceEEEeCCcEEEEEEe-----eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 25 PNVTVTVGRDALLACVV-----DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~-----~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
.+..+.+|..+.|.|.. .+.+.+. +.|++ +.. + .+.|+... .++.|.|.+++.
T Consensus 129 ~~~~~~~g~~~~i~C~~~~~~~~~~~~~~-------i~W~k-~~~-~---------~~~r~~~~----~~~~L~i~~v~~ 186 (326)
T PHA02785 129 YPQIVNERSTGEMVCPNINAFIASNVNAD-------IIWSG-HRR-L---------RNKRLKQR----TPGIITIEDVRK 186 (326)
T ss_pred ccceecccCcEEEECCChhhcccCCCCce-------EEEcc-CCc-c---------CCcceEec----CCCeEEEeecCh
Confidence 34456789999999972 2345555 99987 322 1 22343332 234899999999
Q ss_pred cCCEEEEEEcc
Q psy5838 100 SDRGWYMCQVN 110 (215)
Q Consensus 100 ~d~G~Y~C~~~ 110 (215)
+|+|.|+|.+.
T Consensus 187 ~d~G~Y~C~~~ 197 (326)
T PHA02785 187 NDAGYYTCVLK 197 (326)
T ss_pred hhCeEEEEEEE
Confidence 99999999876
No 88
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.96 E-value=8.6e-09 Score=65.33 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
.+..+.+.+|+++.|.|...+ +.+. +.|++++.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~-------i~W~k~~~ 34 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLAS-------VVWLFQGG 34 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCce-------EEEEECCc
Confidence 356788899999999999876 4455 99999643
No 89
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.95 E-value=3.2e-08 Score=66.23 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCceEEEeCCcEEEEEEeeccCC---ccceeeeEEEEEEecCCc----cEEE-eeece---eeeCCceEEEEc-CCceE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKG---FKGLRIGWQVAWVRVDTQ----TILS-IHHNV---ITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~---~~~~~~~~~v~W~~~~~~----~~~~-~~~~~---~~~~~~~~~~~~-~~~~~ 90 (215)
.|..+.+.+|++|+|+|.+..+.. ..+.. +.|+++... .+.. ..+.. ....+|+.+..+ ...+.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~----~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~ 80 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVH----GIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNC 80 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceE----EEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEE
Confidence 366789999999999999874431 11121 899997532 1111 11110 112245554422 33445
Q ss_pred EEEEccceecCCEEEEEEc
Q psy5838 91 FLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~ 109 (215)
+|.|.+++.+|+|.|.|.+
T Consensus 81 sL~I~~l~~~Dsg~Y~C~~ 99 (119)
T cd05712 81 SLLISDAQPEDSGKYFFRV 99 (119)
T ss_pred EEEEccCChhhCeEEEEEE
Confidence 5666666666666666644
No 90
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.94 E-value=3e-09 Score=65.48 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.1
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|+|.|.+.+.|.|. +.|+|++
T Consensus 1 v~L~C~~~g~P~p~-------v~W~k~g 21 (77)
T cd05760 1 VTLRCHIDGHPRPT-------YQWFRDG 21 (77)
T ss_pred CEEEEEeeecCCCc-------EEEEECC
Confidence 57999999998888 9999943
No 91
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.94 E-value=6.1e-09 Score=66.31 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=29.5
Q ss_pred CcccCCCCceEEEeC---CcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVG---RDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G---~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|.|...|..+.+..| +++.|.|.+.+.+.+. +.|+++.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~-------i~W~k~~ 42 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPT-------YRWLMNG 42 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCE-------EEEEECC
Confidence 667777777765544 5799999999888887 9999943
No 92
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.94 E-value=4.6e-09 Score=63.59 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.1
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
+.|.|.+.+.|.+. +.|+| ++..
T Consensus 1 ~~l~c~v~g~P~p~-------v~W~k-~g~~ 23 (71)
T cd04976 1 VRLPVKVKAYPPPE-------IQWYK-NGKL 23 (71)
T ss_pred CEEEeEEEEeCCCE-------EEEEE-CCEE
Confidence 46899999999888 99999 5544
No 93
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.94 E-value=2.1e-08 Score=66.49 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCceEEEeCCcEEEEEEeecc
Q psy5838 24 IPNVTVTVGRDALLACVVDNL 44 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~ 44 (215)
+..+.+..|+++.|.|.+...
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~ 25 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSS 25 (116)
T ss_pred cceEEEEcCCcEEEEEEEecC
Confidence 457889999999999999864
No 94
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.94 E-value=9.1e-09 Score=62.29 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=18.9
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
+.|.|.+.|.|.|. +.|+|+++
T Consensus 1 ~~L~C~~~G~P~P~-------v~W~k~~~ 22 (71)
T cd05876 1 LVLECIAEGLPTPE-------VHWDRIDG 22 (71)
T ss_pred CEEEEEeeEecCCe-------EEEEECCc
Confidence 47999999999998 99999544
No 95
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.93 E-value=1.1e-08 Score=68.24 Aligned_cols=35 Identities=23% Similarity=0.558 Sum_probs=26.7
Q ss_pred cCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
...+..+.+..|++|+|+|.+... .... +.|+|..
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~-------v~Wyrq~ 38 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYY-------IFWYKQL 38 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceE-------EEEEEEC
Confidence 445678899999999999998753 2233 8999964
No 96
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.92 E-value=1.1e-08 Score=67.43 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=12.1
Q ss_pred eCCcEEEEEEeecc
Q psy5838 31 VGRDALLACVVDNL 44 (215)
Q Consensus 31 ~G~~v~L~C~~~~~ 44 (215)
.|++|+|+|.+...
T Consensus 1 ~G~~VtLpC~~~~~ 14 (112)
T cd05900 1 LGSSLLIPCYFQDP 14 (112)
T ss_pred CCCcEEEeeEEeCC
Confidence 48999999999854
No 97
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.92 E-value=1.6e-08 Score=67.22 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEe
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVR 60 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~ 60 (215)
+..+.+.+|++++|.|.+..... ..... +.|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~----i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLV----ITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEE----EEEEE
Confidence 56889999999999999875432 11222 78865
No 98
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.92 E-value=2.1e-08 Score=66.86 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEec
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRV 61 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~ 61 (215)
|..+.+.+|++|+|.|.+..... ..... +.|++.
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~----v~W~~~ 39 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDIS----VTWSFQ 39 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceE----EEEEEe
Confidence 56788999999999999975422 12222 889764
No 99
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.92 E-value=4.7e-09 Score=63.14 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|++++|.|.+.|.|.|. +.|+|++
T Consensus 1 G~~v~L~C~a~G~P~P~-------v~W~k~g 24 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY-------VKWMKGG 24 (69)
T ss_pred CCeEEEEEEeeecCCCE-------EEEEECC
Confidence 78999999999999998 9999954
No 100
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.91 E-value=4.8e-09 Score=64.93 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
|+|.|.+.+.|.|. +.|++.++
T Consensus 1 v~l~C~~~G~P~P~-------v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSAEGYPPPT-------IVWKHSKG 22 (79)
T ss_pred CEeEeeCeEeCCCE-------EEEEECCC
Confidence 57999999998887 99999644
No 101
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.90 E-value=3.1e-09 Score=66.41 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=37.5
Q ss_pred ceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEE
Q psy5838 26 NVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGW 104 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 104 (215)
...+.+|++|+|.|.... .+.+. +.|+|+ +..+.. ......|.|.+++.+|+|.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~-------~~w~k~-g~~~~~-----------------~~~~~~l~I~~~~~~dsG~ 62 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYK-------VTYYRD-GKAKKY-----------------SHSNSNLSIPQATLSDSGS 62 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceE-------EEEEEC-CeEccc-----------------cCCCceEEECccCHHHCEE
Confidence 446889999999999853 33344 899994 332210 0012356666666666666
Q ss_pred EEEEccC
Q psy5838 105 YMCQVNT 111 (215)
Q Consensus 105 Y~C~~~~ 111 (215)
|+|.+.+
T Consensus 63 Y~C~~~~ 69 (83)
T cd05753 63 YHCSGII 69 (83)
T ss_pred EEEEEEe
Confidence 6665554
No 102
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.90 E-value=5.1e-09 Score=66.69 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=43.3
Q ss_pred CCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 24 IPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
...+.+.+|+.+.|.|.-. +.|.+. +.|++++ ..+.. ..+.|..+.. .+|+|.+.+++.+|+
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~-------~~W~k~~-~~~~~------~~d~r~~~~~---~~G~L~fs~v~~~D~ 72 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLS-------YRWLLNE-FPNFI------PEDGRRFVSQ---TNGNLYIAKVEASDR 72 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCE-------EEEEECC-ccccc------ccCCCeEEeC---CCCcEEEeecCHhhC
Confidence 4467789999999999765 445565 9999954 32211 1122322222 245677666666666
Q ss_pred EEEEEEccC
Q psy5838 103 GWYMCQVNT 111 (215)
Q Consensus 103 G~Y~C~~~~ 111 (215)
|.|+|.|.+
T Consensus 73 g~Y~C~A~n 81 (96)
T cd05727 73 GNYSCFVSS 81 (96)
T ss_pred ceeEEEEEe
Confidence 666665554
No 103
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.90 E-value=2e-08 Score=64.89 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=42.9
Q ss_pred EEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecCC--cc--EEEeeec-eeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 28 TVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVDT--QT--ILSIHHN-VITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
.+.+|++|+|.|.+... .... +.||+... .+ ++..... ......|+....+. ....|.|.+++.+
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~-------i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~ 73 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNY-------VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTE 73 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCC-------EEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChh
Confidence 46789999999998764 3334 89999753 21 2221111 00112355444333 4556666666666
Q ss_pred CCEEEEEEcc
Q psy5838 101 DRGWYMCQVN 110 (215)
Q Consensus 101 d~G~Y~C~~~ 110 (215)
|+|.|.|.+.
T Consensus 74 Dsg~Y~C~~~ 83 (98)
T cd04984 74 DEADYYCQVW 83 (98)
T ss_pred hCEEEEEEEc
Confidence 6666666554
No 104
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.89 E-value=3.2e-09 Score=64.21 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=34.4
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEccC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
+.|.|.+.|.|.|. +.|+|+ +.++.. ...++.. . ..+|.|.+++.+|+|.|+|.+.+
T Consensus 1 ~~l~c~v~g~P~P~-------v~W~kd-g~~l~~-------~~~~~~~--~---~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 1 YRLTPKVKAFPAPE-------VIWLKD-GLPAAE-------KCSRYHV--D---GYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred CeEEeeEEEcCCCe-------EEEEEC-CEECCC-------CCcEEEe--C---CCEEEECcCCHHHCEEEEEEEEc
Confidence 46899999999998 999994 443311 1112211 1 12566666666666666665554
No 105
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.89 E-value=8.1e-09 Score=63.54 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=18.3
Q ss_pred EEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 37 LACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 37 L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
++|.+.|.|.|. +.|+| ++..+
T Consensus 3 i~~~v~G~P~Pt-------i~W~k-ng~~l 24 (79)
T cd05855 3 IPFTVKGNPKPT-------LQWFH-EGAIL 24 (79)
T ss_pred EEEEEeEeCCCc-------eEEEE-CCEEC
Confidence 679999999998 99999 55543
No 106
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.89 E-value=3.8e-09 Score=68.74 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=23.3
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+.+..+.+|++|+|.|......... +.|+|+
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~-------~~W~kg 35 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLA-------YAWYKG 35 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceE-------EEEEcC
Confidence 44566788999999999875433223 899996
No 107
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.89 E-value=8.4e-09 Score=64.07 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=18.2
Q ss_pred EEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 37 LACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 37 L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
|.|.+.+.|.|. +.|+| ++..+
T Consensus 3 i~~~v~G~P~P~-------v~W~k-~g~~i 24 (81)
T cd04971 3 IPFTVRGNPKPT-------LTWYH-NGAVL 24 (81)
T ss_pred EEEEeEeeCCCc-------EEEEE-CCEEC
Confidence 689999999998 99999 55544
No 108
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.88 E-value=6.4e-09 Score=63.67 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.6
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
+.|.|.+.+.|.|. +.|+|++.
T Consensus 1 a~l~C~~~G~P~P~-------v~W~k~~~ 22 (75)
T cd05763 1 ARLECAATGHPTPQ-------IAWQKDGG 22 (75)
T ss_pred CEeEeecccccCCE-------EEEEeCCC
Confidence 47899999999998 99999543
No 109
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.88 E-value=4.1e-09 Score=63.52 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.6
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
+.|.|.+.|.|.|. +.|+| ++..+
T Consensus 1 ~~~~c~v~G~P~P~-------v~W~k-~g~~l 24 (70)
T cd05864 1 VKIPVKYYGYPPPE-------VKWYK-NGQLI 24 (70)
T ss_pred CEEEeEEEEeCCCE-------EEEEE-CCEEC
Confidence 46899999999998 99999 55443
No 110
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.87 E-value=6.7e-09 Score=65.09 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.9
Q ss_pred CCcEEEEEEeecc--CCccceeeeEEEEEEecC
Q psy5838 32 GRDALLACVVDNL--KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 32 G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~ 62 (215)
|+++.|.|.+.+. +.+. +.|.+.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~-------i~W~~~~ 26 (84)
T cd05742 1 GETLVLNCTVLTELNEGVD-------FQWTYPG 26 (84)
T ss_pred CCeEEEEEEEEeCCCccEE-------EEEecCC
Confidence 7899999999988 5555 9998844
No 111
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.86 E-value=8.9e-09 Score=64.65 Aligned_cols=67 Identities=28% Similarity=0.461 Sum_probs=43.7
Q ss_pred CCCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
..|....+.+|++++|.|.+.+ .+.+. +.|++++.. +. .+. . ...+.|.|.+++.+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~-------i~W~~~~~~-~~----------~~~--~---~~~~~L~I~~v~~~ 62 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYT-------LVWTRVGGG-LP----------SRA--M---DFNGILTIRNVQLS 62 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcE-------EEEEECCCc-CC----------Ccc--c---ccCCEEEECCCCHH
Confidence 4467888999999999999874 45555 999995432 10 010 0 01236777777777
Q ss_pred CCEEEEEEccC
Q psy5838 101 DRGWYMCQVNT 111 (215)
Q Consensus 101 d~G~Y~C~~~~ 111 (215)
|+|.|+|.+.+
T Consensus 63 DsG~Y~C~a~n 73 (85)
T cd05754 63 DAGTYVCTGSN 73 (85)
T ss_pred HCEEEEEEEec
Confidence 77777776654
No 112
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.85 E-value=2.2e-08 Score=62.69 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=20.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|++++|.|.+.+.+.+. +.|++..
T Consensus 1 Ge~~~l~C~~~~~~~~~-------~~W~~~~ 24 (84)
T cd05861 1 GETITVNCIVQGNEVVD-------FSWTYPG 24 (84)
T ss_pred CCcEEEEEEEECCCccE-------EEEEECC
Confidence 78999999999877666 8998743
No 113
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.85 E-value=2.1e-08 Score=64.56 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=17.6
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|++|+|.|.+...... . ++.|+|..
T Consensus 1 G~~vtL~C~~~~~~~~--~----~v~W~k~~ 25 (97)
T cd05846 1 GGNVTLSCNLTLPEEV--L----QVTWQKIQ 25 (97)
T ss_pred CCcEEEEEEeCCCCee--E----EEEEEEcC
Confidence 7899999998754221 1 28998854
No 114
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.84 E-value=2.6e-08 Score=62.29 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.7
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+.+..|+++.|.|.+.+.+.+. +.|++++
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~-------v~W~k~~ 32 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPT-------ITWLKDG 32 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCe-------EEEEECC
Confidence 35667899999999999877776 9999943
No 115
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.84 E-value=9.2e-09 Score=65.55 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
|++|+|.|.+....... +.|+++...
T Consensus 1 G~~VtL~c~~~~~~~~~-------i~W~~~~~~ 26 (92)
T cd05741 1 GESVTLPVSNLPENLQE-------ITWYKGKDK 26 (92)
T ss_pred CCcEEEEcccCCCCCEE-------EEEECCCCC
Confidence 89999999987643333 999996533
No 116
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.83 E-value=9.7e-09 Score=62.09 Aligned_cols=22 Identities=23% Similarity=0.767 Sum_probs=18.6
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
|.|.|.+.+.|.|. +.|+|.++
T Consensus 1 v~l~C~~~g~P~p~-------v~W~k~~~ 22 (71)
T cd05731 1 LLLECIAEGLPTPE-------ISWIKIGG 22 (71)
T ss_pred CEEEEEeeEecCCe-------EEEEECCe
Confidence 57999999999887 99999543
No 117
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.83 E-value=1.4e-08 Score=62.10 Aligned_cols=24 Identities=13% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEEEEeec-cCCccceeeeEEEEEEecCCccE
Q psy5838 35 ALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 35 v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
++|.|.+.+ .|.+. +.|+|+ +..+
T Consensus 1 ~~l~C~~~g~~P~p~-------~~W~k~-g~~l 25 (75)
T cd05750 1 LVLKCEATSEYPSLR-------FKWFKD-GKEL 25 (75)
T ss_pred CEEEEEccCCCCCce-------EEEEcC-Ceec
Confidence 479999998 77777 999994 4443
No 118
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.82 E-value=1.2e-08 Score=62.80 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
|.|.|.+.|.|.|. +.|+| ++.
T Consensus 1 i~l~C~~~G~P~P~-------v~W~k-~g~ 22 (77)
T cd05733 1 IVIKCEAKGNPPPT-------FSWTR-NGT 22 (77)
T ss_pred CEEEeeCcccCCCe-------EEEEE-CCe
Confidence 57999999999888 99999 444
No 119
>smart00409 IG Immunoglobulin.
Probab=98.81 E-value=1e-07 Score=59.12 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=25.1
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..+.+..|+++.|.|.+.+.+... +.|+++
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~-------~~W~~~ 31 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPE-------VTWYKQ 31 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCe-------EEEEEC
Confidence 467788999999999999875555 999995
No 120
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.81 E-value=1e-07 Score=59.12 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=25.1
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..+.+..|+++.|.|.+.+.+... +.|+++
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~-------~~W~~~ 31 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPE-------VTWYKQ 31 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCe-------EEEEEC
Confidence 467788999999999999875555 999995
No 121
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.81 E-value=2.6e-08 Score=65.78 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~ 62 (215)
++..+.+.+|+++.|.|.+. ...... +.|++..
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~~~~ 40 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSS-------VYWYRQS 40 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSE-------EEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcce-------EEEEEEC
Confidence 46788999999999999998 223333 8999853
No 122
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.81 E-value=3.6e-08 Score=63.60 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=22.1
Q ss_pred eEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 27 VTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
+.+.+|++|+|.|.+... .... +.|+|..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~-------~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYE-------KYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcE-------eEeECCC
Confidence 568899999999998753 2223 8999974
No 123
>KOG3515|consensus
Probab=98.80 E-value=1.7e-08 Score=85.02 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=51.6
Q ss_pred EEEEEcccCCCCCeEEEEEeecC--CCcceeeE--EEEEcCCeEEecCCCcc-eeeecCCcEEEEEEecc-cCCCeEEEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD--PMRSRQGY--LQVVVPPSIIDKDTSTD-LVVREQANVTLNCKAQG-YPEPYVMWR 198 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~--l~v~~~p~~~~~~~~~~-~~~~~g~~~~l~C~~~~-~p~~~i~W~ 198 (215)
..+.+...+..+.|.|+|.+.+. ........ +.+..+...+....... ....+|..+.|.|.+.+ +|.+++.|+
T Consensus 163 s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 163 SLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred cceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 44777888889999999999652 23333333 33333322222212222 34789999999998765 799999999
Q ss_pred eCCCccc
Q psy5838 199 REDGANL 205 (215)
Q Consensus 199 ~~~~~~~ 205 (215)
+ +....
T Consensus 243 ~-~s~~~ 248 (741)
T KOG3515|consen 243 K-DSRPQ 248 (741)
T ss_pred c-ccccc
Confidence 9 54443
No 124
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.79 E-value=5.3e-08 Score=64.17 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=23.0
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
...|+|.+++.+|+|.|.|.+... ......+.|+|.
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 345778888888888888887542 334444555553
No 125
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.78 E-value=5e-08 Score=63.92 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=24.9
Q ss_pred CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
...+|+|.+++.+|+|.|.|.+.+. ......+.|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 4456888888889999999988653 223444445543
No 126
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.77 E-value=4.2e-08 Score=62.35 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=22.7
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+++.+|++++|.|... .+.+. +.|+++.
T Consensus 5 ~~~~~eG~~v~L~C~~~-~p~p~-------v~Wykq~ 33 (91)
T cd05871 5 VVYGVENNSTFLECLPK-SPQAS-------VKWLFQR 33 (91)
T ss_pred EEEEecCCcEEEEEECC-CCCce-------EEEEEEC
Confidence 46788999999999964 55555 9999853
No 127
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.77 E-value=1.2e-07 Score=61.79 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=42.0
Q ss_pred EEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc----c--EEEeeec-ee--e----eCCceEEEEcCCceEEEEE
Q psy5838 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ----T--ILSIHHN-VI--T----QNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~----~--~~~~~~~-~~--~----~~~~~~~~~~~~~~~~l~i 94 (215)
.+.+|++|+|.|.+....... +.|+|+... + ++..... .. . ...|+...... ....|.|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~-------v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I 73 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTG-------CSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTL 73 (104)
T ss_pred cccCCCeEEEEEEecCCCCCc-------EEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEE
Confidence 356899999999986543344 899997532 2 2222110 00 0 12344433322 4556666
Q ss_pred ccceecCCEEEEEEcc
Q psy5838 95 KNVQESDRGWYMCQVN 110 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~ 110 (215)
.+++.+|+|.|.|.+.
T Consensus 74 ~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 74 KNFQKENEGYYFCSVA 89 (104)
T ss_pred CCCCHHHCEEEEEEEc
Confidence 6666666666666554
No 128
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=7.9e-08 Score=62.95 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
..+|+|.+++.+|+|.|.|.+.+. ......+.|+|
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEE
Confidence 456888888888888888888542 22333344444
No 129
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.75 E-value=4.8e-08 Score=59.91 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=16.7
Q ss_pred EEEEEEeec-cCCccceeeeEEEEEEecCCccE
Q psy5838 35 ALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 35 v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
+.|.|.+.+ .|.+. +.|+++ +..+
T Consensus 1 ~~L~C~a~~~~p~~~-------~~W~~~-g~~i 25 (76)
T cd05895 1 LVLRCETVSEYPSLR-------FKWFKN-GKEI 25 (76)
T ss_pred CEEEEecccCCCCCc-------eEEEEC-Cccc
Confidence 479999864 45565 999995 4443
No 130
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.73 E-value=9.2e-08 Score=67.27 Aligned_cols=32 Identities=13% Similarity=0.396 Sum_probs=24.6
Q ss_pred CceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCC
Q psy5838 25 PNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~ 63 (215)
..+.+.+|++|+|.|... +...+. +.|+|.++
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~q-------VtWkK~~~ 55 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSIL-------ITWKKNNK 55 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccce-------EEEEEcCC
Confidence 467889999999999986 333444 99999644
No 131
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.73 E-value=1.8e-07 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.7
Q ss_pred eEEEEEcccCCCCCeEEEEEeec
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
...|.|.+++.+|+|.|.|.+..
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEe
Confidence 34577788888888888887753
No 132
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.73 E-value=3.2e-08 Score=61.63 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.9
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGW 104 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 104 (215)
..+++..|++++|+|....... . +.|+.++ ..+ ..+.++..... .|.|..++.+|+|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A-~-------v~W~~ng-~~l--------~~~~r~~~~~~-----GLlI~~~~~~dsG~ 61 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLA-S-------PVWLFNG-TPL--------NAQFSYRVGTD-----GLLILVTSPEHSGT 61 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCc-c-------EEEEECC-ccc--------CCCcceEEeCC-----CCEEEECCHhhCEE
Confidence 4688999999999999987644 4 9999954 332 12234333322 25555555555555
Q ss_pred EEEEcc
Q psy5838 105 YMCQVN 110 (215)
Q Consensus 105 Y~C~~~ 110 (215)
|.|.+.
T Consensus 62 Y~C~s~ 67 (85)
T cd05872 62 YRCYSE 67 (85)
T ss_pred EEEEEe
Confidence 555544
No 133
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.73 E-value=1.8e-07 Score=62.36 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
.|....+.+|++|+|.|.+.... ... +.|||+.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~-------~~WYkQ~ 37 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYG-------VNWVRQA 37 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccce-------EEEEEEC
Confidence 35678899999999999976432 223 8999974
No 134
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.72 E-value=4.1e-08 Score=60.20 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.|.|.+.+.|.+. +.|+|++
T Consensus 1 ~~L~C~v~g~P~p~-------v~W~k~~ 21 (76)
T cd05736 1 ASLRCHAEGIPLPR-------LTWLKNG 21 (76)
T ss_pred CEeEeEeeecCCCE-------EEEEECC
Confidence 46899999988887 9999953
No 135
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.72 E-value=1e-07 Score=61.70 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=16.4
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|+|+|.+......... ++.|+|..
T Consensus 2 ~v~L~C~~~~~~~~~~~----~v~W~k~~ 26 (100)
T cd05888 2 DTRLPCRYNVSDGETVV----QVLWIREN 26 (100)
T ss_pred CEEEEeEEecCCCCcEE----EEEEEEcc
Confidence 68999999754322211 28999853
No 136
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.72 E-value=4.1e-08 Score=60.40 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.3
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|.|.|.+.|.|.|. +.|+|++
T Consensus 1 ~~l~C~a~G~P~P~-------i~W~k~g 21 (77)
T cd05874 1 IVIQCEAKGKPPPS-------FSWTRNG 21 (77)
T ss_pred CEEEeeCcccCCCe-------EEEEECC
Confidence 57999999999998 9999953
No 137
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.71 E-value=2.1e-07 Score=59.71 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.......+.+|+++.|.|.+.+.|.|.+ +.|...
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~------i~W~w~ 39 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDR------IAWAWK 39 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcE------EEEEEc
Confidence 5566788999999999999976666542 567663
No 138
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.69 E-value=2.2e-07 Score=60.95 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCC
Q psy5838 28 TVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~ 63 (215)
.+.+|++|+|.|.+.... ... +.|||...
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~-------~~Wyrq~~ 31 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTR-------IYWLRWRQ 31 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCe-------EEEEEECC
Confidence 578999999999987532 233 99999753
No 139
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.68 E-value=2.6e-07 Score=59.52 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=14.0
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.+|.|.+++.+|.|.|.|.+.+
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t 84 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFAT 84 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEe
Confidence 3456666666666666666655
No 140
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.68 E-value=5.3e-07 Score=57.60 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=19.1
Q ss_pred eEEEEEcccCCCCCeEEEEEeecCCCcce
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTDPMRSR 152 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 152 (215)
+.+|.|.+++.+|.|.|+|.+...+..+.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~ 87 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNT 87 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCe
Confidence 34577777777777888887765444433
No 141
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.67 E-value=1e-07 Score=55.58 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=37.5
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEcc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
+|++++|.|.+.+.+.+. +.|++++ ..+. ....... ....|.|.+++..|+|.|+|.+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~-------v~W~~~~-~~~~----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~ 59 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPN-------ITWLKDG-KPLP----------ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAE 59 (63)
T ss_pred CCceEEEEeeCccCCCCe-------EEEEECC-EECC----------CCCEEec---CCcEEEEeeCCcccCEEEEEEEe
Confidence 488999999987666666 9999943 3221 1111111 23367777777777777777664
Q ss_pred C
Q psy5838 111 T 111 (215)
Q Consensus 111 ~ 111 (215)
+
T Consensus 60 n 60 (63)
T smart00408 60 N 60 (63)
T ss_pred c
Confidence 4
No 142
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.66 E-value=6.2e-08 Score=61.63 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=23.1
Q ss_pred ceEEEeCCcEEEEEEeecc-----CCccceeeeEEEEEEecCCcc
Q psy5838 26 NVTVTVGRDALLACVVDNL-----KGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~-----~~~~~~~~~~~v~W~~~~~~~ 65 (215)
...+.+|.++.|.|...+. +.+. +.|+|+ +.+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~-------i~Wyk~-~~~ 40 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPP-------VQWYKD-CKL 40 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCc-------EEEeEC-CEE
Confidence 4567899999999987543 2344 999994 443
No 143
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.63 E-value=1.2e-07 Score=58.32 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.4
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.|.|.+.|.|.|. +.|+|++
T Consensus 1 ~~l~C~~~G~P~P~-------v~W~k~g 21 (77)
T cd05875 1 IIIECEAKGNPVPT-------FQWTRNG 21 (77)
T ss_pred CEEEEeccccCCCE-------EEEEECC
Confidence 47999999999998 9999943
No 144
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.63 E-value=1.7e-07 Score=58.94 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=18.8
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
|++++|.|.+.+.+.+. . .+.|.+.++
T Consensus 1 Ge~~~L~C~~~~~~~~~-~----~~~W~~p~~ 27 (86)
T cd05862 1 GEKLVLNCTARTELNVG-I----DFQWDYPGK 27 (86)
T ss_pred CCcEEEEEEEEeCCCCc-E----EEEEEcCCc
Confidence 78999999998654332 1 178987543
No 145
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=69.98 Aligned_cols=68 Identities=26% Similarity=0.501 Sum_probs=39.4
Q ss_pred CCceEEEeCCcEEEEEEeecc-----CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccce
Q psy5838 24 IPNVTVTVGRDALLACVVDNL-----KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~-----~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
+....+.+|+++.|.|...+. +.+. +.|+| ++..+. .+.++.+.. ..+.|.|.+++
T Consensus 136 ~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~-------I~WyK-ng~~l~--------~~~r~~~~~---~~~~L~I~~V~ 196 (227)
T PHA02826 136 TINYQFNSGKDSKLHCYGTDGISSTFKDYT-------LTWYK-NGNIVL--------YTDRIQLRN---NNSTLVIKSAT 196 (227)
T ss_pred CccceEecCCCEEEEeeCCCCccccCCCce-------EEEEE-CCEECC--------CCCCEEEeC---CCCEEEECcCC
Confidence 345667889999999997632 3455 99999 555431 223333321 12255655555
Q ss_pred ecCCEEEEEEcc
Q psy5838 99 ESDRGWYMCQVN 110 (215)
Q Consensus 99 ~~d~G~Y~C~~~ 110 (215)
.+|+|.|+|.+.
T Consensus 197 ~~DsG~YtC~a~ 208 (227)
T PHA02826 197 HDDSGIYTCNLR 208 (227)
T ss_pred HHhCEEEEEEEE
Confidence 555555555443
No 146
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.63 E-value=1.2e-06 Score=56.02 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=23.8
Q ss_pred eEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV 158 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 158 (215)
+.+|.|.+++.+|.|.|+|.+...+.......+.|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 34577788888888888888766555555555544
No 147
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.61 E-value=2.1e-07 Score=58.99 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=44.6
Q ss_pred CCEEEEEEccCCCceEEEEccC-----------------------------CeEEEEEcccCCCCCeEEEEEeec-CCCc
Q psy5838 101 DRGWYMCQVNTNPRISLTYNDH-----------------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMR 150 (215)
Q Consensus 101 d~G~Y~C~~~~~~~~~~~~~~~-----------------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~ 150 (215)
+...+.|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.|.+ .+..
T Consensus 2 ~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 81 (90)
T cd04974 2 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPS 81 (90)
T ss_pred CcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCcc
Confidence 3467899999999999999531 013588999999999999999976 4555
Q ss_pred ceeeEEEE
Q psy5838 151 SRQGYLQV 158 (215)
Q Consensus 151 ~~~~~l~v 158 (215)
...+.|.|
T Consensus 82 ~~sa~L~V 89 (90)
T cd04974 82 HHSAWLTV 89 (90)
T ss_pred cCCEEEEe
Confidence 66666665
No 148
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.61 E-value=2.7e-07 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=17.7
Q ss_pred eEEEEEcccCCCCCeEEEEEeec
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
+.+|+|.+++.+|+|.|.|.+..
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~ 93 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVL 93 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEE
Confidence 45677888888888888888764
No 149
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.60 E-value=1.9e-07 Score=59.37 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.+...|. ..+..|+.|+|.|.... +... +.|+|+ +..... .........+.+.|.+
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~~-~~~~-------f~l~k~-g~~~~~------------~~~~~~~~~~~f~i~~ 59 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGPY-GAVE-------YRLYRE-GSTFAV------------KKPPEPQNKAKFFIPS 59 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecCC-CCCE-------EEEEEC-CCCccc------------cccCCCceeEEEEccC
Confidence 455555553 46779999999998753 2333 788884 332100 0001112334566666
Q ss_pred ceecCCEEEEEEccC
Q psy5838 97 VQESDRGWYMCQVNT 111 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~ 111 (215)
++.+|+|.|+|...+
T Consensus 60 v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 60 MKREHAGRYRCYYRS 74 (91)
T ss_pred CChhHCEEEEEEEEC
Confidence 666666666665543
No 150
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.59 E-value=2.3e-06 Score=56.49 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=21.9
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
+.+|+|.+++.+|+|.|.|.+... ......+.|+|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 356778888888888888887543 22333344444
No 151
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.58 E-value=5.5e-07 Score=55.62 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=37.0
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEee---ecee---eeCCceEEEEcC-CceEEEEEccceecCCE
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIH---HNVI---TQNPRISLTYND-HRSWFLNIKNVQESDRG 103 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~---~~~~---~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G 103 (215)
+|+|.|.+...... .. .+.|++... .. ++... .... ...+|+.+.... ....+|.|.+++.+|+|
T Consensus 1 ~v~l~C~~~~~~~~-~~----~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G 75 (81)
T smart00406 1 SVTLSCKASGFTFS-SY----YVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTG 75 (81)
T ss_pred CEEEEEEEeccccc-ee----EEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCE
Confidence 47899999865543 11 189998642 11 11111 1111 123455554442 34566666666666666
Q ss_pred EEEEE
Q psy5838 104 WYMCQ 108 (215)
Q Consensus 104 ~Y~C~ 108 (215)
.|.|.
T Consensus 76 ~Y~C~ 80 (81)
T smart00406 76 TYYCA 80 (81)
T ss_pred EEEEc
Confidence 66664
No 152
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.57 E-value=2.9e-07 Score=56.20 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=39.7
Q ss_pred EEEEEccCCCceEEEEccC------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQ 157 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~ 157 (215)
...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 2 ~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred EEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 3579999999999998321 112699999999999999999976 34444444444
No 153
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.53 E-value=3e-07 Score=58.99 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.7
Q ss_pred CceEEEeCCcEEEEEEe
Q psy5838 25 PNVTVTVGRDALLACVV 41 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~ 41 (215)
....+.+|++|.|.|..
T Consensus 8 ~~~~~~~GE~v~l~C~~ 24 (104)
T cd05896 8 KKYMVLAGEPVRIKCAL 24 (104)
T ss_pred eeEEEcCCCeEEEECCC
Confidence 45778899999999996
No 154
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.52 E-value=3.9e-07 Score=58.25 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=24.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|.+...+ ...+..|++|+|.|.... .... +.|+|++
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~-------f~l~k~g 37 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDR-------FILYKEG 37 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCE-------EEEEECC
Confidence 4444433 556779999999998764 2233 8899954
No 155
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.51 E-value=4.9e-07 Score=54.90 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=41.7
Q ss_pred CEEEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
.-.+.|.+.+.|.+.+.|... .+..|.|.+++.+|+|.|+|.+.+. +.....+.|.
T Consensus 3 ~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 3 RVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred eEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 346789999999989888431 2346999999999999999999763 4444444443
No 156
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.50 E-value=4.2e-07 Score=55.36 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=42.7
Q ss_pred CCEEEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 101 DRGWYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 101 d~G~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
++-...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+. +.....+.|.
T Consensus 3 ~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 3 QTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 4457789999999999999421 2346999999999999999999763 4444444443
No 157
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.49 E-value=4.9e-07 Score=55.21 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.8
Q ss_pred EEEEEccCCCceEEEEccC------------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH------------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
.+.|.+.|.|.+.+.|... ....|.|.+++.+|+|.|+|.|.+. +..+..+.|.
T Consensus 2 ~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 2 RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred EEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4679999999999999431 0125889999999999999999763 4444444444
No 158
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.49 E-value=7.3e-07 Score=54.83 Aligned_cols=58 Identities=29% Similarity=0.426 Sum_probs=38.6
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEE
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYM 106 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 106 (215)
..+.+|++++|.|.+.+.+... +.|+++ +..+.. . .+ .+.+.++..+|+|.|+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~-------~~w~~~-~~~~~~---------------~---~~-~~~~~~~~~~~~g~y~ 61 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQ-------VQWYKN-GSPINS---------------S---QN-GLFIPNVSPEDSGNYT 61 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSE-------EEEEET-TEEEEE---------------E---SS-EEEESSEEGGGTEEEE
T ss_pred eEEeCCCcEEEEEEEEccccee-------eeeeee-eeeeee---------------e---ee-eeeeeeeccccCEEEE
Confidence 5688999999999999776665 999994 332210 0 01 2566666666666666
Q ss_pred EEccC
Q psy5838 107 CQVNT 111 (215)
Q Consensus 107 C~~~~ 111 (215)
|.+.+
T Consensus 62 C~~~~ 66 (80)
T PF13895_consen 62 CRASN 66 (80)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66544
No 159
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.46 E-value=1.3e-06 Score=56.31 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=44.3
Q ss_pred ecCCEEEEEEccCCCceEEEEccC-----------------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceee
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH-----------------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQG 154 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~-----------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 154 (215)
..+.....|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 15 ~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred CCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 466778899999999988888431 1246899999999999999999763 4445555
Q ss_pred EEE
Q psy5838 155 YLQ 157 (215)
Q Consensus 155 ~l~ 157 (215)
.|.
T Consensus 95 ~l~ 97 (98)
T cd05870 95 YLD 97 (98)
T ss_pred EEe
Confidence 554
No 160
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.46 E-value=1.3e-06 Score=54.84 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=42.8
Q ss_pred cCCEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
.+.-...|.+.+.|.+.+.|... ....|.|.++..+|+|.|+|.+.+. +.....+.|.
T Consensus 10 G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 10 GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred CCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 44567789999999999999321 1356999999999999999999763 4444444443
No 161
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.46 E-value=5.9e-07 Score=54.03 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEEEEccCCCceEEEEccC-----------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH-----------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
.+.|.+.+.|.+.+.|... ....|.|.++..+|+|.|+|.+.+. +......++.+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4679999999999999432 1346999999999999999999764 44444444444
No 162
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.45 E-value=1.2e-06 Score=54.79 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=45.1
Q ss_pred ceecCCEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEE
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQ 157 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~ 157 (215)
+...+.....|.+.+.|.+.+.|... ..+.|.|.++..+|+|.|+|.+.+ .+.....+.|.
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 44566678899999999999999321 134688999999999999999976 34444444444
No 163
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.45 E-value=3.7e-07 Score=55.37 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=41.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
|.+...+.......+. +.|.|.+.+.+ .+. +.|+. ...... .. ..........|.|.+
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~-------~~W~~-~~~~~~--------~~----~~~~~~~~~~L~i~~ 60 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPS-------ISWYD-SNPSFN--------SN----SRGSSSSNSTLTISN 60 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEE-------EEEET-EEEEEE--------EE----EEEEEEEEEEEEESS
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeE-------EEEEe-cCCcee--------ee----eeeccceeeEEEEcc
Confidence 5555555555554444 99999999876 444 88981 111000 00 001111344777778
Q ss_pred ceecCCEEEEEEcc
Q psy5838 97 VQESDRGWYMCQVN 110 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~ 110 (215)
+..+|.|.|+|.|.
T Consensus 61 v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 61 VTRSDNGTYTCIAS 74 (75)
T ss_dssp CCGGGTEEEEEEEE
T ss_pred CCHHhCcEEEEEEE
Confidence 88888888888764
No 164
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.44 E-value=2.3e-06 Score=54.87 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=44.5
Q ss_pred eecCCEEEEEEccCCCc-eEEEEcc--CC-----------------eEEEEEcccCCCCCeEEEEEeecC--CCcceeeE
Q psy5838 98 QESDRGWYMCQVNTNPR-ISLTYND--HR-----------------SWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGY 155 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~-~~~~~~~--~~-----------------~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~ 155 (215)
...+.-.+.|.+.+.|. +.+.|.. .. ...|.|..++.+|+|.|+|.|.+. +.....+.
T Consensus 13 ~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~ 92 (96)
T cd05865 13 SVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVN 92 (96)
T ss_pred CCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEE
Confidence 34667789999999984 6999943 10 135899999999999999999874 34444444
Q ss_pred EEE
Q psy5838 156 LQV 158 (215)
Q Consensus 156 l~v 158 (215)
|+|
T Consensus 93 l~v 95 (96)
T cd05865 93 VKI 95 (96)
T ss_pred EEE
Confidence 443
No 165
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.44 E-value=8.3e-07 Score=54.38 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=43.6
Q ss_pred CEEEEEEccCCCceEEEEccC---------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH---------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQV 158 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v 158 (215)
...+.|.+.+.|.+.++|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|
T Consensus 3 ~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 3 DGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 467889999999999999421 113588999999999999999976 455566666655
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.43 E-value=1.7e-06 Score=55.32 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=43.5
Q ss_pred ecCCEEEEEEccCCCceEEEEccC-------------------------CeEEEEEcccCCCCCeEEEEEeecCCCccee
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH-------------------------RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQ 153 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~-------------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 153 (215)
..++-.+.|.+.+.|.+.+.|... ..+.|.|.+++.+|+|.|+|.+.......+.
T Consensus 11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~ 90 (95)
T cd05882 11 VGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAK 90 (95)
T ss_pred cCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEE
Confidence 456667889988888888888221 1367999999999999999999764444555
Q ss_pred eEEE
Q psy5838 154 GYLQ 157 (215)
Q Consensus 154 ~~l~ 157 (215)
.++.
T Consensus 91 ~~~~ 94 (95)
T cd05882 91 ATVT 94 (95)
T ss_pred EEEE
Confidence 4443
No 167
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.43 E-value=1.4e-06 Score=53.17 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=38.2
Q ss_pred EEEEccCCCceEEEEcc------------------CCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEE
Q psy5838 105 YMCQVNTNPRISLTYND------------------HRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQ 157 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~------------------~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~ 157 (215)
..|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 3 L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 3 LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred EEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 56888888888888821 1123599999999999999999976 34444444443
No 168
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.42 E-value=9.6e-07 Score=52.96 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=39.5
Q ss_pred EEEEEccCCCceEEEEccC------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYL 156 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 156 (215)
...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+. +.....+.|
T Consensus 2 ~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 2 EFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred EEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 3579999999999998432 1346999999999999999999763 433444444
No 169
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.41 E-value=1.4e-06 Score=55.19 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=43.6
Q ss_pred CEEEEEEccCCCceEEEEccC-----------------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcc
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH-----------------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRS 151 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~-----------------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~ 151 (215)
+....|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+ .+...
T Consensus 3 ~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 82 (90)
T cd05858 3 TVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISH 82 (90)
T ss_pred eEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCccc
Confidence 456789999999888888531 013699999999999999999965 45566
Q ss_pred eeeEEEE
Q psy5838 152 RQGYLQV 158 (215)
Q Consensus 152 ~~~~l~v 158 (215)
..+.|.|
T Consensus 83 ~~a~L~V 89 (90)
T cd05858 83 HSAWLTV 89 (90)
T ss_pred ceEEEEE
Confidence 6666665
No 170
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.41 E-value=1.7e-06 Score=52.58 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=38.7
Q ss_pred EEEEEccCCCceEEEEccC----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYL 156 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 156 (215)
...|.+.+.|.+.+.|... ....|.|.++..+|+|.|+|.+.+. +.....+.|
T Consensus 3 ~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred EEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 3568888888888888321 2356999999999999999999763 444444444
No 171
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.41 E-value=2.2e-06 Score=55.12 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=43.5
Q ss_pred cCCEEEEEEccCCCceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEE
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQ 157 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~ 157 (215)
.+.-...|.+.+.|.+.++|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 17 g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 17 EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred CCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 46678899999999999988321 114688999999999999999976 34445555554
No 172
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.40 E-value=1.7e-06 Score=52.81 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQV 158 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v 158 (215)
...|.+.+.|.+.++|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3579999999988888321 124589999999999999999976 344455555554
No 173
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.39 E-value=1.6e-06 Score=54.74 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=45.1
Q ss_pred ecCCEEEEEEccCCCceEEEEccC------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQV 158 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v 158 (215)
..+.....|.+.+.|.+.+.|... .+..|.|.+++.+|+|.|.|.+.+ .+.....+.|.|
T Consensus 15 ~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 466678899999999989998331 235689999999999999999976 344444455544
No 174
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.37 E-value=8.6e-07 Score=53.53 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=38.7
Q ss_pred EEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYL 156 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 156 (215)
.+.|.+.+.|.+.++|... ....|.|.+++.+|+|.|+|.|.+. +.....+.|
T Consensus 3 ~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 3 IFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 5689999999999999431 1223778899999999999999763 444444444
No 175
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.37 E-value=2.7e-06 Score=54.13 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=42.2
Q ss_pred ecCCEEEEEEccCCCceEEEEcc-----------------CCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYND-----------------HRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYL 156 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l 156 (215)
..++-...|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+ .+.....+.+
T Consensus 15 ~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred CCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 34556778999999988888832 1134699999999999999999976 3444444444
No 176
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.36 E-value=2e-06 Score=52.49 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.3
Q ss_pred CEEEEEEccCCCceEEEEcc---------------CCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEE
Q psy5838 102 RGWYMCQVNTNPRISLTYND---------------HRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQV 158 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v 158 (215)
.-.+.|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|
T Consensus 3 ~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 3 TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred eEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 45678999999988888832 1135589999999999999999976 344455555554
No 177
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.35 E-value=1.3e-06 Score=52.60 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.0
Q ss_pred EEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 105 YMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
..|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+. +.....+.+.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 3 LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468888888888888421 2346999999999999999999763 44444444443
No 178
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.31 E-value=1.3e-05 Score=52.39 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.+....+..|+.+.|.|.+.+....+.+. +.|+|+...
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~----~~wvRq~pg 41 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFR----ASLLKGADS 41 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEE----EEEEEeCCC
Confidence 34567888999999999998765544343 899997433
No 179
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.30 E-value=5.3e-06 Score=52.54 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=44.4
Q ss_pred eecCCEEEEEEccCCCceEEEEccC----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 98 QESDRGWYMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
...+.-...|.+.+.|.+.+.|... ....|.|.+++.+|.|.|+|.|.+. +.....+.|.
T Consensus 13 ~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 13 YEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred cCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 3456677899999999999999321 1346899999999999999999763 4444444443
No 180
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.29 E-value=5.6e-06 Score=53.00 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=42.9
Q ss_pred ecCCEEEEEEccCCCceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYL 156 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l 156 (215)
..+.-...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|
T Consensus 15 ~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred cCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 346677889999988888888321 124689999999999999999976 3444444444
Q ss_pred E
Q psy5838 157 Q 157 (215)
Q Consensus 157 ~ 157 (215)
.
T Consensus 95 ~ 95 (96)
T cd05732 95 E 95 (96)
T ss_pred e
Confidence 3
No 181
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.29 E-value=3.3e-06 Score=52.07 Aligned_cols=43 Identities=30% Similarity=0.611 Sum_probs=33.5
Q ss_pred EEEEccCCCceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 105 YMCQVNTNPRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..|.+.+.|.+.+.|... .+..|.|.++..+|+|.|.|.+.+.
T Consensus 3 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 3 LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred eEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeC
Confidence 568888888888877321 1345899999999999999999764
No 182
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.29 E-value=1e-05 Score=50.54 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred CEEEEEEccCCCceEEEEccC--------------------CeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH--------------------RSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQV 158 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~--------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v 158 (215)
+-.+.|.+.+.|.+.+.|... ....|.|.+++.+|+|.|.|.+.+.. .....+.|+|
T Consensus 3 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 3 TITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred cEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 446778888887777777321 13469999999999999999997643 2334444444
No 183
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.29 E-value=2.4e-06 Score=53.92 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=44.0
Q ss_pred ecCCEEEEEEccCCCceEEEEcc----------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYND----------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
..+...+.|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+. +.....+.|.
T Consensus 14 ~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 14 EGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp TTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 45667889999998888888822 24677999999999999999999764 3333333343
No 184
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.29 E-value=4.9e-06 Score=52.80 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=45.0
Q ss_pred ceecCCEEEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEE
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQV 158 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v 158 (215)
+...++....|.+.+. .+.+.|... ....|.|.+++.+|+|.|.|.+.+.. ..+..+.|.|
T Consensus 15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred cccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 3457778899999998 888888431 23469999999999999999997643 2344444544
No 185
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.29 E-value=3.2e-06 Score=51.27 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=40.1
Q ss_pred CEEEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYL 156 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 156 (215)
+-...|.+.+.|.+.++|... ....|.|.+++.+|+|.|+|.+.+. +.....+.|
T Consensus 3 ~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 3 DVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred eEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 345679999888888888432 1346999999999999999999763 444444444
No 186
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=4.3e-06 Score=51.68 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=40.3
Q ss_pred CEEEEEEccCCCceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQ 157 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~ 157 (215)
.-.+.|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 3 ~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 3 TASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred cEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 346789999988888888432 013589999999999999999976 34444444443
No 187
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.28 E-value=3.7e-06 Score=52.06 Aligned_cols=49 Identities=29% Similarity=0.602 Sum_probs=38.6
Q ss_pred ecCCEEEEEEccCCCceEEEEcc--------------CCeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYND--------------HRSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..+.....|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+.
T Consensus 8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 70 (82)
T cd05856 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNR 70 (82)
T ss_pred CCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcC
Confidence 34566778999998888888832 12367999999999999999999763
No 188
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.26 E-value=4.1e-06 Score=51.51 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=36.8
Q ss_pred EEEccCCCceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEE
Q psy5838 106 MCQVNTNPRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYL 156 (215)
Q Consensus 106 ~C~~~~~~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l 156 (215)
.|.+.|.|.++++|... ....|.|..+..+|+|.|+|.|.+ .+...+.+.+
T Consensus 4 ~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 4 PFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 57778888888888321 124689999999999999999976 3444444443
No 189
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.26 E-value=4.5e-06 Score=50.73 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=36.9
Q ss_pred CCEEEEEEccCCCceEEEEcc-C-------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 101 DRGWYMCQVNTNPRISLTYND-H-------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 101 d~G~Y~C~~~~~~~~~~~~~~-~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
+.-.+.|.+.+.|.+.+.|.. . ....|.|..+..+|+|.|+|.+.+.
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05764 2 QRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNA 62 (74)
T ss_pred CeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECC
Confidence 345678999999999999842 1 1245889999999999999999763
No 190
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.24 E-value=3.2e-06 Score=50.67 Aligned_cols=43 Identities=26% Similarity=0.574 Sum_probs=34.6
Q ss_pred EEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 105 YMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 3 L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 58 (69)
T cd05746 3 IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNT 58 (69)
T ss_pred eEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECC
Confidence 578999988888888321 2346999999999999999999763
No 191
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.24 E-value=8.7e-06 Score=51.74 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=39.2
Q ss_pred ceecCCEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
+...++-.+.|.+.+.|. .+.|... ....|.|..+..+|+|.|+|.|.+.
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence 345666788999999887 8888421 1236999999999999999999774
No 192
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.23 E-value=1.2e-05 Score=51.11 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=38.8
Q ss_pred ceecCCEEEEEEccCCCceEEEEccC------------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDH------------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
+...++..+.|.+.+.|. .+.|... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 345677788999988875 7888421 1236999999999999999999774
No 193
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.23 E-value=6.1e-06 Score=50.21 Aligned_cols=55 Identities=33% Similarity=0.455 Sum_probs=39.3
Q ss_pred EEEEEccCCCceEEEEccC---------------CeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH---------------RSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQV 158 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 158 (215)
...|.+.+.|.+.+.|... .+..|.|.+++.+|+|.|+|.+.+... .+..+.+.|
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4679999999888888331 134588999999999999999976432 234444443
No 194
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.22 E-value=6.3e-06 Score=50.57 Aligned_cols=44 Identities=18% Similarity=0.478 Sum_probs=34.4
Q ss_pred EEEEEccCCCceEEEEccC---------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 104 WYMCQVNTNPRISLTYNDH---------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 2 TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred EEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeC
Confidence 3578888888888888321 1236899999999999999999763
No 195
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.21 E-value=6.5e-06 Score=50.63 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=36.2
Q ss_pred CEEEEEEccCCCceEEEEcc----------------CCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 102 RGWYMCQVNTNPRISLTYND----------------HRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
+-.+.|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+
T Consensus 3 ~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 63 (78)
T cd05743 3 TVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN 63 (78)
T ss_pred EEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEe
Confidence 44678999999988888832 1135699999999999999999965
No 196
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.21 E-value=2.7e-06 Score=54.21 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=20.5
Q ss_pred eEEEeCCcEEEEEEe-e----ccCCccceeeeEEEEEEecCCcc
Q psy5838 27 VTVTVGRDALLACVV-D----NLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~-~----~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
..+..|.+..|.|.- . ....+. +.||| ++.+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~-------v~WYK-d~~~ 40 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVE-------LQWYK-DSVL 40 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCc-------EEEcc-CCEE
Confidence 446678999999972 1 123344 99999 4544
No 197
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.20 E-value=4.5e-06 Score=50.43 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=34.5
Q ss_pred EEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 104 WYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.+.|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence 3578889999999888321 123699999999999999999975
No 198
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.20 E-value=1.5e-05 Score=51.02 Aligned_cols=58 Identities=28% Similarity=0.541 Sum_probs=39.1
Q ss_pred cCCEEEEEEccCCCceEEEEcc-------------------------CCeEEEEEcccCCCCCeEEEEEeecCCCcceee
Q psy5838 100 SDRGWYMCQVNTNPRISLTYND-------------------------HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG 154 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~-------------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 154 (215)
.++....|.+.+.|.+.+.|.. .....|.|.+++.+|+|.|.|.+..........
T Consensus 12 G~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~ 91 (95)
T cd07701 12 GGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKA 91 (95)
T ss_pred CCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEE
Confidence 4445566766666666666621 123579999999999999999997644444444
Q ss_pred EEE
Q psy5838 155 YLQ 157 (215)
Q Consensus 155 ~l~ 157 (215)
.|.
T Consensus 92 ~l~ 94 (95)
T cd07701 92 YLT 94 (95)
T ss_pred EEE
Confidence 444
No 199
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.18 E-value=5.6e-05 Score=48.44 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=26.9
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
...+.+.+|+++.|.|.+...|.+. .+.|.+.+
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~------~~~W~~~~ 42 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPE------HQQWIYMN 42 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCe------eeEEEcCC
Confidence 3467899999999999999888875 27899843
No 200
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.18 E-value=8.2e-06 Score=50.56 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.2
Q ss_pred EEEccCCCceEEEEccC-----------------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEE
Q psy5838 106 MCQVNTNPRISLTYNDH-----------------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYL 156 (215)
Q Consensus 106 ~C~~~~~~~~~~~~~~~-----------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 156 (215)
.|.+.+.|.+.++|... ....|.|.+++..|+|.|+|.|.+. +.....+.+
T Consensus 4 ~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 4 PFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred EEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 47777888888888321 1235999999999999999999763 444444443
No 201
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.17 E-value=1.2e-05 Score=50.14 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=39.5
Q ss_pred CEEEEEEccCC--CceEEEEccC---------------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 102 RGWYMCQVNTN--PRISLTYNDH---------------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 102 ~G~Y~C~~~~~--~~~~~~~~~~---------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
.-...|.+.+. |.+.+.|... ....|.|.+++.+|+|.|+|.+.+. +.......|.
T Consensus 3 ~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~ 82 (84)
T cd05742 3 TLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVN 82 (84)
T ss_pred eEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEE
Confidence 34668999888 7788888320 1246899999999999999999764 3334444443
No 202
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.16 E-value=7.6e-06 Score=51.60 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=33.1
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
|.+.. .+.+..+.+|+.+.|.|.+.|.|.|.++|++ ++..+.
T Consensus 2 p~i~~--~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~ 43 (88)
T cd05851 2 ADINV--KFKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMP 43 (88)
T ss_pred CceEE--ccccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCC
Confidence 44444 3446668899999999999999999999999 665553
No 203
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.14 E-value=1.8e-05 Score=48.33 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=39.7
Q ss_pred EEEEEccCCCceEEEEccC----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
...|.+.+.|.+.+.|... ....|.|.+++.+|.|.|+|.+.+. +.....+.|.|
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 3578888888888888321 1235899999999999999999763 44455555554
No 204
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.10 E-value=6.7e-06 Score=50.94 Aligned_cols=36 Identities=36% Similarity=0.755 Sum_probs=31.6
Q ss_pred CcceeeecCCcEEEEEEecccCCC-eEEEEeCCCcccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEP-YVMWRREDGANLS 206 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~ 206 (215)
+.++.+.+|+.+.|.|.+.|.|.| .|.|++ ||.++.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~ 41 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLG 41 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECC
Confidence 456778999999999999999999 799999 787765
No 205
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.07 E-value=2.5e-05 Score=48.80 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=38.3
Q ss_pred ecCCEEEEEEc-cCCCceEEEEccC--------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 99 ESDRGWYMCQV-NTNPRISLTYNDH--------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 99 ~~d~G~Y~C~~-~~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..+.....|.+ .+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEec
Confidence 35667788998 6888888888331 1246999999999999999999764
No 206
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.06 E-value=1.2e-05 Score=51.19 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=35.4
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
||.+.. .+.+..+.+|+.+.|.|.+.|+|.|.+.|++ +|..+...
T Consensus 3 ~~~~~~--~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~ 47 (92)
T cd05747 3 PATILT--KPRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSS 47 (92)
T ss_pred CCcccc--cCccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCC
Confidence 455443 3456778999999999999999999999999 67666543
No 207
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.06 E-value=1.4e-05 Score=51.53 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=34.4
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCCc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~ 211 (215)
+....+..|+.+.|.|.+.|.|++.+.|++ +|..+..+.+.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~~~ 47 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGEGI 47 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCCcE
Confidence 446678999999999999999999999999 88888654443
No 208
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.05 E-value=2.4e-05 Score=47.93 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=32.7
Q ss_pred EEEEEccCCCceEEEEccC----------------CeEEEEEcccCC----CCCeEEEEEeecC
Q psy5838 104 WYMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQE----SDRGWYMCQVNTD 147 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~~----~d~G~Y~C~~~~~ 147 (215)
.+.|.+.+.|.++++|... ....|.|..+.. +|+|.|+|.|.+.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05733 2 VIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcC
Confidence 3679999999999999421 134577777643 6899999999774
No 209
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.04 E-value=1.2e-05 Score=51.67 Aligned_cols=43 Identities=40% Similarity=0.828 Sum_probs=34.7
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
|.+.. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus 2 P~i~~--~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~ 44 (100)
T cd07693 2 PRIVE--HPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET 44 (100)
T ss_pred CeEEe--cCceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence 44443 3456678899999999999999999999999 7777654
No 210
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.04 E-value=3.1e-05 Score=47.01 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=34.0
Q ss_pred EEEEccC-CCceEEEEccC-------------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 105 YMCQVNT-NPRISLTYNDH-------------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 105 Y~C~~~~-~~~~~~~~~~~-------------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..|.+.+ .|.+.+.|... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 3 l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 3 LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred EEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEc
Confidence 4788888 88888888321 1346899999999999999999763
No 211
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.04 E-value=1e-05 Score=51.74 Aligned_cols=45 Identities=31% Similarity=0.716 Sum_probs=34.6
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
|.+.......+..+..|+++.|.|.+.|.|.|.+.|++ +|..+..
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~ 46 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIES 46 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcC
Confidence 44443333445568899999999999999999999999 7776654
No 212
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.02 E-value=3.1e-05 Score=49.23 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=33.0
Q ss_pred CEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 102 RGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.-...|.+.+.|.+.+.|... ....|.|.+++.+|+|.|+|.+.+
T Consensus 18 ~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 79 (92)
T cd05891 18 TLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKN 79 (92)
T ss_pred EEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 345567777777777777221 123689999999999999999975
No 213
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.00 E-value=5.1e-05 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=32.1
Q ss_pred EEEEccCCCceEEEEccC----------------CeEEEEEcccCC----CCCeEEEEEeecCC
Q psy5838 105 YMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQE----SDRGWYMCQVNTDP 148 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~~----~d~G~Y~C~~~~~~ 148 (215)
..|.+.|.|.++++|... .+..|.|..+.. .|.|.|+|.|.+..
T Consensus 3 l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05874 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNER 66 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCC
Confidence 579999999999999321 234466766654 37899999998743
No 214
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.99 E-value=5.5e-05 Score=46.35 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=32.8
Q ss_pred EEEEEccCCCceEEEEccC----------------CeEEEEEcccC----CCCCeEEEEEeecCC
Q psy5838 104 WYMCQVNTNPRISLTYNDH----------------RSWFLNIKNVQ----ESDRGWYMCQVNTDP 148 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~----------------~~~~l~i~~~~----~~d~G~Y~C~~~~~~ 148 (215)
.+.|.+.|.|.+.++|... .+..|.|..+. .+|+|.|+|.|.+..
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNL 66 (77)
T ss_pred EEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEecc
Confidence 3679999999999999431 13457777654 246899999997743
No 215
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.97 E-value=3.2e-05 Score=49.27 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=36.7
Q ss_pred CCEEEEEEccCCCceEEEEccCC-------------eEEEEEcccC-CCCCeEEEEEeecC
Q psy5838 101 DRGWYMCQVNTNPRISLTYNDHR-------------SWFLNIKNVQ-ESDRGWYMCQVNTD 147 (215)
Q Consensus 101 d~G~Y~C~~~~~~~~~~~~~~~~-------------~~~l~i~~~~-~~d~G~Y~C~~~~~ 147 (215)
+.-.+.|.+.+.|.+.++|.... +..|.|.++. .+|+|.|+|.|.+.
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 34678999999999999994321 2358888875 68999999999764
No 216
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.97 E-value=1.6e-05 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=32.1
Q ss_pred cceeeecCCcEEEEEEecc-cCCCeEEEEeCCCcccccc
Q psy5838 171 TDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~ 208 (215)
....+..|+++.|.|.+.| .|+|.+.|+| ||.+|...
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~ 48 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNK 48 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCC
Confidence 4566889999999999999 8889999999 88888743
No 217
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.96 E-value=8.9e-05 Score=47.34 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=26.5
Q ss_pred CeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEE
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQ 157 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 157 (215)
....|.|.+++.+|+|.|.|.+.........+.|.
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 94 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPVQTAKATVT 94 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence 34579999999999999999997655445555544
No 218
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.96 E-value=7.6e-05 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.8
Q ss_pred cEEEEEEeec-cCCccceeeeEEEEEEecCCcc
Q psy5838 34 DALLACVVDN-LKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 34 ~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
.+.|.|.+.+ .|.+. +.|++ ++..
T Consensus 1 ~~~L~C~v~g~~P~~~-------v~W~~-~g~~ 25 (82)
T cd05759 1 PYNLTCRARGAKPAAE-------IIWFR-DGEV 25 (82)
T ss_pred CEEEEEEEeCccCCCE-------EEEEE-CCEE
Confidence 3689999987 45555 99999 4554
No 219
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.94 E-value=9e-05 Score=47.28 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=36.2
Q ss_pred cCCEEEEEEccCCCceEEEEccCC--------------eEEEEEcccC-CCCCeEEEEEeecC
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDHR--------------SWFLNIKNVQ-ESDRGWYMCQVNTD 147 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~~--------------~~~l~i~~~~-~~d~G~Y~C~~~~~ 147 (215)
.+.....|.+.+.|.+.++|.... ...|.|.++. ..|.|.|.|.|.+.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 456788999999999999994311 2346776654 58999999999764
No 220
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.90 E-value=2.4e-05 Score=48.93 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=32.4
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~ 43 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASE 43 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCC
Confidence 445678899999999999999999999999 77776543
No 221
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.88 E-value=6e-05 Score=48.11 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=35.0
Q ss_pred cCCEEEEEEccC-----CCceEEEEccC----------------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 100 SDRGWYMCQVNT-----NPRISLTYNDH----------------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 100 ~d~G~Y~C~~~~-----~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.+.-...|.+.+ .|.+.+.|... .+..|.|.++..+|+|.|+|.+.+
T Consensus 14 G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 14 GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred CCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcC
Confidence 444566788887 57777777321 134589999999999999999976
No 222
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.88 E-value=3.1e-05 Score=49.48 Aligned_cols=38 Identities=37% Similarity=0.747 Sum_probs=32.0
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+.+..+.+|+++.|.|.+.|.|.|.+.|++ ||..+...
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~ 43 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLV 43 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECccc
Confidence 345567789999999999999999999999 88877644
No 223
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.85 E-value=5.4e-05 Score=48.33 Aligned_cols=31 Identities=35% Similarity=0.807 Sum_probs=27.2
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+|+.+.|.|.+.|.|.|.++|++ +|..+...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~ 48 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTE 48 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEE-CCeECccC
Confidence 57899999999999999999999 78777543
No 224
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.84 E-value=0.00013 Score=44.75 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=40.4
Q ss_pred eecCCEEEEEEccCCCc-eEEEEccC------CeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEE
Q psy5838 98 QESDRGWYMCQVNTNPR-ISLTYNDH------RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQ 157 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~-~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 157 (215)
...|.-..+|.+.+.|. ..+.|... ....|.|.++ .+|+|.|+|.+.+. ..+..+.|+
T Consensus 13 ~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~ 77 (78)
T cd05752 13 FQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLE 77 (78)
T ss_pred eCCCCEEEEEeCCCCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEe
Confidence 34667788999998765 35777432 2346889999 99999999999743 444444444
No 225
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.82 E-value=7.6e-05 Score=47.99 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=30.7
Q ss_pred cceeeecCCcEEEEEEecccCCC-eEEEEeCCCcccccc
Q psy5838 171 TDLVVREQANVTLNCKAQGYPEP-YVMWRREDGANLSYN 208 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~ 208 (215)
....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+...
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~ 46 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELESG 46 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCC
Confidence 34557899999999999999999 699999 77766543
No 226
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.80 E-value=3.6e-05 Score=46.07 Aligned_cols=28 Identities=43% Similarity=0.895 Sum_probs=24.7
Q ss_pred CCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 178 QANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 178 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
|+++.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT 28 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence 6789999999999999999999 676654
No 227
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.79 E-value=0.00027 Score=45.10 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEE
Q psy5838 111 TNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQ 157 (215)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 157 (215)
.++++.+.......+.|+|.+++.+|+|.|.|.+..........++.
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 34566665545678889999999999999999997655555554443
No 228
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.78 E-value=5.3e-05 Score=49.05 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=31.6
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
...+..|+.+.|.|.+.|+|+|.+.|++ ||.++..+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~ 47 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIEN 47 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCC
Confidence 4557889999999999999999999999 88887644
No 229
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.76 E-value=0.00018 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcccCCCCCeEEEEEeecC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..|.|.+++.+|+|.|+|.+.+.
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 44 SELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred EEEEECcCCcccCEEEEEEEEeC
Confidence 56899999999999999999763
No 230
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.75 E-value=0.00015 Score=44.64 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=15.0
Q ss_pred EEEcccCCCCCeEEEEEeec
Q psy5838 127 LNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~ 146 (215)
|.+.....+|.+.|+|+|.+
T Consensus 45 L~~~~~~~Ddg~~~~C~A~n 64 (80)
T cd05885 45 IRFPVDRKDDGAILSCEASH 64 (80)
T ss_pred EEEEeeeccCCcEEEEEEEC
Confidence 56677777777888888865
No 231
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.74 E-value=0.00025 Score=43.95 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=36.1
Q ss_pred cCCEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
.++-...|.+.+.|.+.+.|... ..+.|.|.++..+|.|.|.|.+.+.
T Consensus 9 G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred CCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence 44556789888888777887321 1245889999999999999999753
No 232
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.73 E-value=0.00018 Score=44.91 Aligned_cols=49 Identities=27% Similarity=0.501 Sum_probs=37.8
Q ss_pred eecCCEEEEEEccC-CCceEEEEccC----------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 98 QESDRGWYMCQVNT-NPRISLTYNDH----------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~-~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
...+.....|.+.+ .|.+.+.|... .+..|.|..++.+|+|.|.|.+.+
T Consensus 14 ~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 14 RPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred cCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEec
Confidence 34667788999875 57777777332 245799999999999999999965
No 233
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.69 E-value=6.5e-05 Score=45.85 Aligned_cols=29 Identities=28% Similarity=0.729 Sum_probs=25.7
Q ss_pred CCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 178 QANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 178 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
|+++.|.|.+.|.|.|.++|++ +|..+..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~ 29 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIEG 29 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECCC
Confidence 6889999999999999999999 8877654
No 234
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.67 E-value=0.00047 Score=43.18 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=25.1
Q ss_pred EEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
..|.|.+++.+|+|.|+|.+.+. +.......|.|
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V 84 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIV 84 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceEecccEEEEE
Confidence 46999999999999999999763 33344444544
No 235
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.63 E-value=0.00013 Score=42.63 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=15.7
Q ss_pred EEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 35 ALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 35 v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.|.|.+.+.+... +.|++++
T Consensus 1 ~~l~C~~~~~~~~~-------~~W~~~~ 21 (74)
T cd00096 1 VTLTCLASGPPPPT-------ITWLKNG 21 (74)
T ss_pred CEEEEEecCCCCCc-------EEEEECC
Confidence 47899998855555 9999954
No 236
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.60 E-value=0.00012 Score=48.12 Aligned_cols=30 Identities=30% Similarity=0.671 Sum_probs=26.4
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
.|..+.|.|.+.|.|.+.++|++ ||..+..
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~ 51 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAK-NGVPLDL 51 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence 56899999999999999999999 8877753
No 237
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.58 E-value=0.0007 Score=43.44 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=41.1
Q ss_pred ceecCCEEEEEEccCCCce---EEEEcc--------------------CCeEEEEEcccCCCC-CeEEEEEeec-CCCcc
Q psy5838 97 VQESDRGWYMCQVNTNPRI---SLTYND--------------------HRSWFLNIKNVQESD-RGWYMCQVNT-DPMRS 151 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~---~~~~~~--------------------~~~~~l~i~~~~~~d-~G~Y~C~~~~-~~~~~ 151 (215)
+...|.+...|.+.+.|.+ .|.|.. .....|.|.++...| .|.|.|.|.+ .+...
T Consensus 13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 4567888999999776654 566621 134558999998777 6899999966 34444
Q ss_pred eeeEE
Q psy5838 152 RQGYL 156 (215)
Q Consensus 152 ~~~~l 156 (215)
..++|
T Consensus 93 ~~i~L 97 (98)
T cd05898 93 AIIQL 97 (98)
T ss_pred EEEEe
Confidence 44433
No 238
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.55 E-value=0.00021 Score=43.94 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=30.3
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCCc
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~ 211 (215)
...+.+|+.+.|.|.+.+. .+.+.|++ ||..+..+.+.
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~~~~ 40 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGENNRT 40 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCCceE
Confidence 4557899999999999886 56899999 88887654443
No 239
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.51 E-value=0.00012 Score=43.55 Aligned_cols=25 Identities=40% Similarity=0.761 Sum_probs=22.5
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.|+|.|.+.|++ ||+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~ 25 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLIS 25 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECc
Confidence 4689999999999999999 888875
No 240
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.50 E-value=0.00029 Score=44.85 Aligned_cols=28 Identities=18% Similarity=0.595 Sum_probs=21.0
Q ss_pred EeCCcEEEEEEeecc-CC-ccceeeeEEEEEEecCCcc
Q psy5838 30 TVGRDALLACVVDNL-KG-FKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~-~~-~~~~~~~~~v~W~~~~~~~ 65 (215)
..|+.++|.|.+.+. |. .. +.|++ ++..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~-------i~W~~-~g~~ 40 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDIT-------VTWLK-NGKE 40 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcE-------EEEEE-CCEE
Confidence 468899999999986 32 34 89999 4443
No 241
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.50 E-value=0.00055 Score=44.01 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=23.9
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+-.+.+|+.++|.|.+.+..+..... +.|||++
T Consensus 9 ~p~~~~eG~~~tL~C~v~g~~P~a~L~----i~W~rG~ 42 (100)
T cd05755 9 LPSWQPVGKNYTLQCDVPGVAPRQNLT----VVLLRGN 42 (100)
T ss_pred CCCcccCCCcEEEEEEEcCcCCCCcEE----EEEeeCC
Confidence 334457999999999999754443221 6999954
No 242
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.48 E-value=0.00046 Score=43.94 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.3
Q ss_pred eEEEEEcccCCCCCeEEEEEeec
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
...|.|.+++.+|+|.|.|.+.+
T Consensus 64 ~~~L~I~~l~~sDsgtY~C~v~~ 86 (94)
T cd07690 64 SFPLIIKNLKIEDSDTYICEVED 86 (94)
T ss_pred eEEEEECCCCHHHCEEEEEEECC
Confidence 35699999999999999999864
No 243
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.46 E-value=0.0007 Score=42.07 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=34.4
Q ss_pred ecCCEEEEEEccC-CCceEEEEcc--------CCeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 99 ESDRGWYMCQVNT-NPRISLTYND--------HRSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 99 ~~d~G~Y~C~~~~-~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
..|.-..+|.+.+ .+...+.|.. .....|.|..++.+|+|.|+|.+.+.
T Consensus 13 ~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 13 EGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred CCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeC
Confidence 4455566788743 4555666633 22356999999999999999999653
No 244
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.45 E-value=0.002 Score=44.25 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~ 62 (215)
.|.+...+......+|+.++|.|.+.+..++ . +.|++++
T Consensus 38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~-------i~W~~~g 78 (139)
T cd05771 38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQ-------VEWTREP 78 (139)
T ss_pred CCceEEeCCCceeecCCcEEEEEEECCCCCCCeE-------EEEEECC
Confidence 4666555555555589999999999985332 4 8999954
No 245
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.44 E-value=0.00093 Score=41.44 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=23.2
Q ss_pred ceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCc
Q psy5838 26 NVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~ 64 (215)
...+-.|++++|.|.......| . +.|+....+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~-------i~w~~P~n~ 41 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFK-------VEWRGPGNK 41 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCcc-------EEEeCCCCc
Confidence 3466789999999998654343 5 999885544
No 246
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.40 E-value=0.0008 Score=38.54 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=33.3
Q ss_pred CEEEEEEccCCCceEEEEcc------------CCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 102 RGWYMCQVNTNPRISLTYND------------HRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
+....|.+.+.+.+.+.|.. .....|.|.+++..|+|.|+|.+.+
T Consensus 4 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 4 SVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred eEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence 34556777766666777732 2345699999999999999999864
No 247
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.40 E-value=0.00046 Score=40.30 Aligned_cols=43 Identities=30% Similarity=0.474 Sum_probs=31.5
Q ss_pred CEEEEEEc-cCCCceEEEEccC---------------Ce---EEEEEcccCCCCCeEEEEEe
Q psy5838 102 RGWYMCQV-NTNPRISLTYNDH---------------RS---WFLNIKNVQESDRGWYMCQV 144 (215)
Q Consensus 102 ~G~Y~C~~-~~~~~~~~~~~~~---------------~~---~~l~i~~~~~~d~G~Y~C~~ 144 (215)
+-...|.+ .+.+...+.|... .. ..|.|.+++.+|+|.|+|.|
T Consensus 3 ~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 3 SVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred eEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 34567888 7777777877321 11 12999999999999999986
No 248
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.36 E-value=0.00064 Score=43.15 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=33.4
Q ss_pred cCCEEEEEEccCC-----CceEEEEccC------------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 100 SDRGWYMCQVNTN-----PRISLTYNDH------------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 100 ~d~G~Y~C~~~~~-----~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
...+...|.+.+. |.+.+.|... .+..|.|.++..+|+|.|+|.+.+
T Consensus 10 g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 10 TKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred ccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEe
Confidence 4456677876532 4556666321 345699999999999999999965
No 249
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.33 E-value=0.00033 Score=44.07 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 178 QANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 178 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
|+.+.|.|.+.|.|++.+.|++ +++.+..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~ 29 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINP 29 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCC
Confidence 7889999999999999999999 7776654
No 250
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.33 E-value=0.00056 Score=42.85 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=30.6
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+.+..+..|+++.|.|.+.+ |.+.+.|++ ||.++..+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~ 39 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPE 39 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCC
Confidence 44667889999999999865 678999999 88888755
No 251
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.32 E-value=0.0032 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=19.1
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|+.++|.|.+.+..... . .+.|++++
T Consensus 14 ~~~~~L~C~a~gF~P~~-i----~v~W~~~g 39 (93)
T cd07698 14 DGSLTLSCHATGFYPRD-I----EVTWLRDG 39 (93)
T ss_pred CCcEEEEEEEEEEeCCC-c----EEEEEECC
Confidence 77899999999854332 1 18999953
No 252
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.28 E-value=0.00046 Score=44.09 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=49.1
Q ss_pred CcEEEEEEeeccCCccceeeeEEEEEEecCC--ccEEEee----ecee--eeCCceEEEEcCCceEEEEEccceecCCEE
Q psy5838 33 RDALLACVVDNLKGFKGLRIGWQVAWVRVDT--QTILSIH----HNVI--TQNPRISLTYNDHRSWFLNIKNVQESDRGW 104 (215)
Q Consensus 33 ~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~--~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 104 (215)
+.++|.|.+...... . +|.|.|... ...+... ...+ ...+|+.+......+.+|.|.|++.+|+|.
T Consensus 1 ~~vtL~C~~~~~~~~--~----qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~ 74 (96)
T cd05889 1 EKMKLECVYPKTGVL--I----QVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGL 74 (96)
T ss_pred CCEEEEeEcCCCCcE--E----EEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEE
Confidence 468999998743221 2 388988543 1222222 1111 223566665443467899999999999999
Q ss_pred EEEEccCCCc
Q psy5838 105 YMCQVNTNPR 114 (215)
Q Consensus 105 Y~C~~~~~~~ 114 (215)
|+|.+...|.
T Consensus 75 Y~C~~~t~P~ 84 (96)
T cd05889 75 YCCSLVTYPQ 84 (96)
T ss_pred EEEEEEeCCC
Confidence 9999887664
No 253
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.21 E-value=0.00049 Score=43.95 Aligned_cols=76 Identities=25% Similarity=0.431 Sum_probs=49.8
Q ss_pred CcEEEEEEeeccCCccceeeeEEEEEEecCCc--cEEEeeec----ee--eeCCceEEEEcCCceEEEEEccceecCCEE
Q psy5838 33 RDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ--TILSIHHN----VI--TQNPRISLTYNDHRSWFLNIKNVQESDRGW 104 (215)
Q Consensus 33 ~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~--~~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 104 (215)
++|+|+|.+...... . +|.|.|.... ..+...+. .+ ...+|+.+...+....+|.|.|++.+|+|.
T Consensus 1 ~~vtL~C~~~~~~~~--~----qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~ 74 (96)
T cd05887 1 KNVTLKCRIQVNETI--T----QSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGV 74 (96)
T ss_pred CCEEEEEEecCCCcE--E----EEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEE
Confidence 478999999854322 2 3899875322 22222211 11 233577665445567899999999999999
Q ss_pred EEEEccCCCc
Q psy5838 105 YMCQVNTNPR 114 (215)
Q Consensus 105 Y~C~~~~~~~ 114 (215)
|+|.+..-|.
T Consensus 75 Y~C~v~tfP~ 84 (96)
T cd05887 75 YICKAVTFPL 84 (96)
T ss_pred EEEEEEeCCC
Confidence 9999877654
No 254
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.21 E-value=0.0027 Score=40.17 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=24.7
Q ss_pred EEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVV 159 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~ 159 (215)
..|.|.+++.+|+|.|+|.+.+.. .....++|+|.
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 348999999999999999996422 22334455553
No 255
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.20 E-value=0.00098 Score=42.11 Aligned_cols=29 Identities=34% Similarity=0.863 Sum_probs=25.0
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.|..+.|.|.+.|.|.|.++|++ ++..+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~ 46 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLM-NGTEID 46 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEE-CCEECC
Confidence 44679999999999999999999 777764
No 256
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.19 E-value=0.00042 Score=41.63 Aligned_cols=27 Identities=33% Similarity=0.705 Sum_probs=23.2
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 181 VTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 181 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+.|.|.+.|.|.|.+.|++ ||+.+..+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~ 27 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISEK 27 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCCC
Confidence 3689999999999999999 88877644
No 257
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.19 E-value=0.0098 Score=36.72 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=14.7
Q ss_pred EEEEcccCCCCCeEEEEEeec
Q psy5838 126 FLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.|.+......|...|+|.+.+
T Consensus 45 ~L~~~p~~eDdG~~~~C~a~~ 65 (82)
T cd05883 45 QLMLKVTKEDDGVPVICLVDH 65 (82)
T ss_pred EEEEECchhhCCCEEEEEEcC
Confidence 466666666666688998865
No 258
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.13 E-value=0.0027 Score=38.53 Aligned_cols=51 Identities=29% Similarity=0.429 Sum_probs=37.5
Q ss_pred eecCCEEEEEEccCCCceEEEEccCCe------EEEEEcccCCCCCeEEEEEeecCC
Q psy5838 98 QESDRGWYMCQVNTNPRISLTYNDHRS------WFLNIKNVQESDRGWYMCQVNTDP 148 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~ 148 (215)
...|.-..+|.+.+.|...+.|..... ..+.+..+..+|.|.|+|.+.+..
T Consensus 12 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 12 EEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp ETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETT
T ss_pred eCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCC
Confidence 345666778999988888888854221 116678889999999999997643
No 259
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.06 E-value=0.0027 Score=40.83 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=51.2
Q ss_pred CcEEEEEEeeccCC-ccceeeeEEEEEEecC--CccEEEeeec----ee--eeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 33 RDALLACVVDNLKG-FKGLRIGWQVAWVRVD--TQTILSIHHN----VI--TQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 33 ~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~--~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
.+|+|.|.+..... .... +|.|.+.. ....+...+. .. ...+|+.+.......++|.|.|++.+|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~----~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G 76 (99)
T cd05886 1 TDVVLHCSFINPLPPVKIT----QVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEG 76 (99)
T ss_pred CcEEEEeEeecCCCCCCeE----EEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCE
Confidence 36899999985322 2212 28887742 2222222221 11 23477777655557789999999999999
Q ss_pred EEEEEccCCCce
Q psy5838 104 WYMCQVNTNPRI 115 (215)
Q Consensus 104 ~Y~C~~~~~~~~ 115 (215)
.|+|.+.+.|.-
T Consensus 77 ~Y~C~v~t~P~g 88 (99)
T cd05886 77 VYICEFATFPTG 88 (99)
T ss_pred EEEEEEEeCCCC
Confidence 999999886543
No 260
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.06 E-value=0.003 Score=40.37 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=23.5
Q ss_pred ceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC
Q psy5838 26 NVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~ 63 (215)
.-.+..|+.++|.|.+.+. .++ ... +.|+|+++
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~-~i~----v~W~r~~~ 41 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPE-GVN----VTWTRGSG 41 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCC-CcE----EEEEECCe
Confidence 3345568999999999988 333 232 89999544
No 261
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.04 E-value=0.0054 Score=37.90 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=17.0
Q ss_pred EEEEEEeecc-CCccceeeeEEEEEEecCCcc
Q psy5838 35 ALLACVVDNL-KGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 35 v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~ 65 (215)
+.|.|.+.+. |.+. +.|+++ +..
T Consensus 2 ~~L~C~~~~~~P~~~-------v~W~~~-~~~ 25 (82)
T cd05761 2 VELTCTSSGSKPAAT-------IRWFKG-DKE 25 (82)
T ss_pred EEEEEEecCcCcCCe-------EEEEEC-CEE
Confidence 6899999875 5555 999994 443
No 262
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.03 E-value=0.011 Score=37.65 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=20.6
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.|+.++|.|.+.+..+.. . .+.|++ ++.
T Consensus 13 ~~~~~~L~C~~~gFyP~~-i----~v~W~~-~g~ 40 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPE-I----TVKWFK-NGQ 40 (94)
T ss_pred CCCCeEEEEEEeeecCCC-C----EEEEEE-CCe
Confidence 588999999999864433 2 289999 444
No 263
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.02 E-value=0.0017 Score=41.38 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=29.8
Q ss_pred CcceeeecCCcEEEEEE-ecccCCCeEEEEeCCCccccc
Q psy5838 170 STDLVVREQANVTLNCK-AQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~~~~~~ 207 (215)
...+.+.+|+.+.|.|. ..|.|.|.|.|+.++...+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~ 48 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ 48 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc
Confidence 34667899999999998 599999999999843344443
No 264
>PHA02982 hypothetical protein; Provisional
Probab=97.00 E-value=0.003 Score=45.44 Aligned_cols=83 Identities=13% Similarity=0.275 Sum_probs=53.2
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeee----------CCceEEEEcCCceEEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ----------NPRISLTYNDHRSWFL 92 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l 92 (215)
...++.+..|++|.|.|.+.....-. ...|++.++..+.....+...- .+.+.++..+ +..+|
T Consensus 30 d~~dv~a~vd~~V~L~C~~~~~~~i~------~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-~~STL 102 (251)
T PHA02982 30 DTADVNATVDQEVKLQCLFKDADEIS------RAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-NSSTF 102 (251)
T ss_pred chhhhhccCCCcEEEEecCCCcchhh------hheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-cceeE
Confidence 34467778899999999976432221 1789997766654222111111 1223333333 56789
Q ss_pred EEccceecCCEEEEEEccCC
Q psy5838 93 NIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~ 112 (215)
.|.++..+..|.|+|.+...
T Consensus 103 TIkk~~i~N~GCYtc~~ks~ 122 (251)
T PHA02982 103 TMKKPDPQNLGCFTCEAKDA 122 (251)
T ss_pred EeccCCcccCCceEEEEecC
Confidence 99999999999999988753
No 265
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.98 E-value=0.0017 Score=38.85 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=34.7
Q ss_pred EEEEEEccCCC-ceEEEEc------c-------CCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 103 GWYMCQVNTNP-RISLTYN------D-------HRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 103 G~Y~C~~~~~~-~~~~~~~------~-------~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
-..+|.+.+.+ ...+.|. . .....|.+.++..+|.|.|+|.|.+
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 35679998877 8888886 1 2345699999999999999999863
No 266
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.98 E-value=0.0094 Score=37.92 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=19.6
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.|+..+|.|.+.+..+.. . .+.|.+ ++.
T Consensus 14 ~~~~~tL~C~a~gFyP~~-I----~v~W~~-~g~ 41 (94)
T cd05767 14 LGEPNTLICFVDNFFPPV-L----NVTWLK-NGV 41 (94)
T ss_pred CCCCeEEEEEEEEEECCc-C----EEEEEE-CCe
Confidence 466789999999864433 2 289999 444
No 267
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.98 E-value=0.014 Score=37.09 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.3
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
.|+..+|.|.+.+..++.. .+.|+| ++..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i-----~v~W~~-dg~~ 42 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDI-----EIRLLK-NGVK 42 (93)
T ss_pred CCCceEEEEEEEEEeCCCC-----EEEEEE-CCEE
Confidence 4667799999998644432 289999 5543
No 268
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=96.95 E-value=0.0023 Score=40.18 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.0
Q ss_pred cceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 171 TDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
..+.+.+|+++.|.|.+.+ |.+.+.|++ ++..+..
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~~~ 38 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPLQR 38 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEE-CCccccc
Confidence 3456789999999999987 778999999 6655543
No 269
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.93 E-value=0.0011 Score=39.82 Aligned_cols=25 Identities=44% Similarity=0.826 Sum_probs=20.6
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k-~~~~~~ 25 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDR-IDGPLS 25 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCcCCC
Confidence 4689999999999999999 555443
No 270
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.92 E-value=0.01 Score=37.34 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEcccCCCCCeEEEEEeecCC
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTDP 148 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~~ 148 (215)
+.+|.|.+++.+|+|.|+|.+....
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCC
Confidence 3679999999999999999996543
No 271
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.91 E-value=0.0056 Score=38.97 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=19.5
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.++.++|.|.+.+..+.. . .+.|++ ++.
T Consensus 13 ~~~~~~L~C~a~gFyP~~-I----~vtW~~-dg~ 40 (94)
T cd05847 13 TSETIQLLCLISGYTPGT-I----EVEWLV-DGQ 40 (94)
T ss_pred CCCCEEEEEEEEeEECCC-C----EEEEEE-CCE
Confidence 456799999999864442 2 289999 444
No 272
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.90 E-value=0.0055 Score=38.02 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=15.3
Q ss_pred EEEEcccCCCCCeEEEEEeecC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
.|.+......+...|+|.+.+.
T Consensus 47 ~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 47 SVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEecchhCCCEEEEEEECc
Confidence 3666666666777888888654
No 273
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.86 E-value=0.0065 Score=40.19 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
....++.++|.|.+.+..+.. . .+.|++ ++.
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~-I----~V~W~k-ng~ 44 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDH-V----SLSWKV-NGK 44 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCC-c----EEEEEE-CCE
Confidence 333567899999999864432 2 189999 444
No 274
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=96.84 E-value=0.0027 Score=41.29 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=48.2
Q ss_pred eCCcEEEEEEeeccCC---ccceeeeEEEEEEecC--C--c-cEEEeeeceee----eCCceEEEEcCCceEEEEEccce
Q psy5838 31 VGRDALLACVVDNLKG---FKGLRIGWQVAWVRVD--T--Q-TILSIHHNVIT----QNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~---~~~~~~~~~v~W~~~~--~--~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
.|++|+|+|.+...+. ..... +.|++.. . . .++........ ...|+..........+|.|.+++
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~----i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 76 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPR----IKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLR 76 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcE----EEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCC
Confidence 4899999999986531 12222 8999862 1 1 12221111111 12233332223467899999999
Q ss_pred ecCCEEEEEEccCC
Q psy5838 99 ESDRGWYMCQVNTN 112 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~ 112 (215)
.+|+|.|.|.+.+.
T Consensus 77 ~sD~G~Y~C~v~~~ 90 (106)
T cd05714 77 LEDSGRYRCEVIDG 90 (106)
T ss_pred HHHCEEEEEEEEcC
Confidence 99999999998764
No 275
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.82 E-value=0.0043 Score=39.58 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=47.2
Q ss_pred CcEEEEEEeeccCCccceeeeEEEEEEecCCc--cEEEeeec----ee--eeCCceEEEEcCCceEEEEEccceecCCEE
Q psy5838 33 RDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ--TILSIHHN----VI--TQNPRISLTYNDHRSWFLNIKNVQESDRGW 104 (215)
Q Consensus 33 ~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~--~~~~~~~~----~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 104 (215)
++|+|.|.+......... .+.|+|.... ..+..... .. ....|+.+........+|.|.+++.+|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~----~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~ 76 (98)
T cd05718 1 ESVTLECSFPVPGPVQIT----QVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGN 76 (98)
T ss_pred CCEEEEeEeeCCCCceEE----EEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEE
Confidence 579999999865422222 2899996532 11111110 01 113455544433367899999999999999
Q ss_pred EEEEccCC
Q psy5838 105 YMCQVNTN 112 (215)
Q Consensus 105 Y~C~~~~~ 112 (215)
|.|.+...
T Consensus 77 Y~C~v~~~ 84 (98)
T cd05718 77 YICEFATF 84 (98)
T ss_pred EEEEEEeC
Confidence 99987653
No 276
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.82 E-value=0.0038 Score=40.57 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=49.3
Q ss_pred eCCcEEEEEEeeccC---CccceeeeEEEEEEecCCc--c--EEEeeece-----eeeCCceEEEEcCCceEEEEEccce
Q psy5838 31 VGRDALLACVVDNLK---GFKGLRIGWQVAWVRVDTQ--T--ILSIHHNV-----ITQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~---~~~~~~~~~~v~W~~~~~~--~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
.|++|+|+|.+...+ ..... .+.|+|.... . ........ .....|+.+........+|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~----~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKI----RVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccc----eEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCC
Confidence 489999999987653 11112 2899996421 1 11111111 1123566665443457799999999
Q ss_pred ecCCEEEEEEccCC
Q psy5838 99 ESDRGWYMCQVNTN 112 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~ 112 (215)
.+|+|.|.|.+.+.
T Consensus 77 ~~DsG~Y~C~v~~~ 90 (106)
T cd05877 77 LEDYGRYRCEVIDG 90 (106)
T ss_pred hHHCEEEEEEEEec
Confidence 99999999988653
No 277
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.82 E-value=0.0096 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=14.9
Q ss_pred EEEEcccCCCCCeEEEEEeecC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
.|.+......+...|+|.+.+.
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEcccccCCCEEEEEEech
Confidence 4666655556667899998653
No 278
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.80 E-value=0.0022 Score=42.20 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=32.1
Q ss_pred EEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCC-CeEEEEeCCCcccc
Q psy5838 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPE-PYVMWRREDGANLS 206 (215)
Q Consensus 158 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~i~W~~~~~~~~~ 206 (215)
|.++|...+...+ ......|+.++|.|.+.+ +|. ..++|++ ||+.+.
T Consensus 2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~ 50 (111)
T cd05772 2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS 50 (111)
T ss_pred cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence 3456665544222 333457888999999988 565 4899999 887764
No 279
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.78 E-value=0.0049 Score=39.28 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
..|.|.++..+|+|.|+|.+.+
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEE
Confidence 4699999999999999999965
No 280
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.77 E-value=0.02 Score=34.69 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
..|.|.+++.+|.|.|.|.+..
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 51 STLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEc
Confidence 5699999999999999999974
No 281
>smart00409 IG Immunoglobulin.
Probab=96.77 E-value=0.02 Score=34.69 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
..|.|.+++.+|.|.|.|.+..
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 51 STLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEc
Confidence 5699999999999999999974
No 282
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.76 E-value=0.0019 Score=40.62 Aligned_cols=25 Identities=36% Similarity=1.012 Sum_probs=22.3
Q ss_pred CCcEEEEEEecccCCCeEEEEeCCCc
Q psy5838 178 QANVTLNCKAQGYPEPYVMWRREDGA 203 (215)
Q Consensus 178 g~~~~l~C~~~~~p~~~i~W~~~~~~ 203 (215)
|+++.|.|.+.+.|.|.+.|++ +|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~g~ 25 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQK-EGS 25 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEe-CCC
Confidence 6889999999999999999999 444
No 283
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.73 E-value=0.0076 Score=37.14 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=28.4
Q ss_pred EEEEEccC-CCceEEEEccCC---------------------eEEEEEcccCCCCCeEEEEEeecC
Q psy5838 104 WYMCQVNT-NPRISLTYNDHR---------------------SWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 104 ~Y~C~~~~-~~~~~~~~~~~~---------------------~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
+.+|.+.+ .|.+.++|.... ...|.+......|.|.|+|.+.+.
T Consensus 3 ~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 3 NLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 34677765 566677772210 124667666667888999999653
No 284
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.73 E-value=0.011 Score=35.88 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=17.0
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.++|.|.+.+..++. . .+.|+| +++
T Consensus 1 ~~~L~C~a~gf~P~~-i----~v~W~k-~g~ 25 (75)
T smart00407 1 KATLVCLVSGFYPPD-I----TVTWLR-NGQ 25 (75)
T ss_pred CeEEEEEEEeEeCCC-C----EEEEEE-CCE
Confidence 368999999863332 1 189999 444
No 285
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.69 E-value=0.0055 Score=39.48 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=9.9
Q ss_pred EEEcccCCCCCeEEEEEee
Q psy5838 127 LNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~ 145 (215)
|.|.+++.+|+|.|.|.+.
T Consensus 66 L~I~nv~~sD~GtY~C~v~ 84 (100)
T cd05888 66 LILRNAVQADEGKYKCRVI 84 (100)
T ss_pred EEEecCccccceEEEEEEE
Confidence 4455555555555555543
No 286
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.63 E-value=0.005 Score=39.43 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=10.9
Q ss_pred eEEEEEccceecCCEEEEEEcc
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
+++|.|.+++.+|+|.|.|.+.
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEE
Confidence 3455555555555444444443
No 287
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.62 E-value=0.0066 Score=39.86 Aligned_cols=78 Identities=22% Similarity=0.457 Sum_probs=49.7
Q ss_pred eCCcEEEEEEeeccCCc-------cceeeeEEEEEEecC-Ccc--EEEeeecee----eeCCceEEEE--cCCceEEEEE
Q psy5838 31 VGRDALLACVVDNLKGF-------KGLRIGWQVAWVRVD-TQT--ILSIHHNVI----TQNPRISLTY--NDHRSWFLNI 94 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~-------~~~~~~~~v~W~~~~-~~~--~~~~~~~~~----~~~~~~~~~~--~~~~~~~l~i 94 (215)
.|++|+|+|.+...... ... .+.|+|.+ +.. ++....+.. ...+|+.+.. ......+|.|
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~----~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I 76 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESP----RIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEI 76 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCC----EEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEE
Confidence 48999999999865421 112 28999863 222 221222221 1235666543 2346788999
Q ss_pred ccceecCCEEEEEEccCC
Q psy5838 95 KNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~ 112 (215)
.+++.+|+|.|.|.+...
T Consensus 77 ~~l~~sD~G~Y~C~v~~~ 94 (110)
T cd05878 77 SRLRSSDSGVYRCEVMHG 94 (110)
T ss_pred CCCChhhCEEEEEEEEeC
Confidence 999999999999988653
No 288
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.58 E-value=0.0031 Score=38.75 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.1
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.+ .|++.|+|++ |++.+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k-~~~~l~ 27 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYR-DRKELK 27 (80)
T ss_pred EEEEEeCCCccCCCeEEEEE-CCEECC
Confidence 689999854 8999999999 777764
No 289
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.57 E-value=0.0052 Score=35.84 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=17.0
Q ss_pred EeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 30 TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.-|.+|+|+|.... .. +.|.+++
T Consensus 5 isGTtVtlTCP~~~---~~-------i~W~~n~ 27 (65)
T cd07692 5 ISGTTVTVTCPLSG---DD-------IKWKKND 27 (65)
T ss_pred EeccEEEEECCCCC---CC-------ceEEeCC
Confidence 35889999998652 22 8899965
No 290
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.56 E-value=0.019 Score=35.45 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=18.8
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
++.++|.|.+.+..... .. +.|+++
T Consensus 8 ~~~~~L~C~v~~f~P~~-i~----v~W~~~ 32 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKD-IT----VTWLKN 32 (83)
T ss_dssp TSEEEEEEEEEEEBSST-EE----EEEEET
T ss_pred CCCEEEEEEEEEEECCC-cE----EEEEec
Confidence 78999999999864432 22 899984
No 291
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.54 E-value=0.0045 Score=38.57 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.2
Q ss_pred CcEEEEEEecccCCC--eEEEEeCCCccccc
Q psy5838 179 ANVTLNCKAQGYPEP--YVMWRREDGANLSY 207 (215)
Q Consensus 179 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~ 207 (215)
+++.|.|.+.|.|.| .+.|++ ||..+..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~ 30 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDL 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEccc
Confidence 468999999999877 589999 8877754
No 292
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.54 E-value=0.0062 Score=38.86 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.4
Q ss_pred ceeeecCCcEEEEEEe-cccCCCeEEEEeCCCccc
Q psy5838 172 DLVVREQANVTLNCKA-QGYPEPYVMWRREDGANL 205 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~ 205 (215)
...+.+|..+.|.|.. .|.|.+.+.|++ ++..+
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~ 45 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPN 45 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCccc
Confidence 4558899999999987 678999999999 66543
No 293
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.49 E-value=0.0075 Score=39.02 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+..|+.++|.|.+.+..... .. +.|+++
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~-i~----v~W~k~ 40 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSD-IF----VKWLQN 40 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCC-CE----EEEEEC
Confidence 334578899999999865443 22 899994
No 294
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.48 E-value=0.0066 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=21.9
Q ss_pred EEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
....++.++|.|.+.+..... .. +.|++ ++..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~-i~----v~W~~-~g~~ 44 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGF-AT----VQWKV-DGAT 44 (100)
T ss_pred HHccCCCcEEEEEEEeEECCC-CE----EEEEE-CCEE
Confidence 344678899999999865322 22 89999 4443
No 295
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.47 E-value=0.0088 Score=38.22 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=12.9
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.+|.|.+++.+|+|.|.|.+..
T Consensus 61 ~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 61 TSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred cEEEEeCCceeeeEEEEEEEEe
Confidence 3455666666666666666543
No 296
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.46 E-value=0.0075 Score=39.24 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=11.7
Q ss_pred EEEEccceecCCEEEEEEccC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
+|.|++++.+|+|.|+|.+.+
T Consensus 71 SL~I~~v~~~D~G~Y~~~v~~ 91 (105)
T cd05774 71 SLLIQNVTQKDTGFYTLQTIT 91 (105)
T ss_pred cEEEecCCcccCEEEEEEEEe
Confidence 566665555555555554443
No 297
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.44 E-value=0.018 Score=36.01 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=18.9
Q ss_pred CCcEEEEEEeec-cCCccceeeeEEEEEEecCCc
Q psy5838 32 GRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 32 G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~ 64 (215)
|+.+.|.|...+ .|.+. +.|+.+++.
T Consensus 14 ~~~~~~~C~s~~~~P~~~-------i~W~~~~~~ 40 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQ-------ITWYLDGGP 40 (89)
T ss_dssp TEEEEEEEEEEEEBS-EE-------EEEEETTCE
T ss_pred ceEEEEEEEeCCeECCeE-------EEEEECCCc
Confidence 679999997664 56666 999995443
No 298
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.44 E-value=0.011 Score=39.16 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=12.9
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.+|.|.+++.+|.|.|+|.+.+
T Consensus 80 aSI~I~nv~~sD~G~Y~C~v~n 101 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCDVKN 101 (116)
T ss_pred eEEEEccCCcccCEEEEEEEEc
Confidence 3455666666666666666544
No 299
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.44 E-value=0.014 Score=38.03 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.8
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.....|.|.+++.+|+|.|.|.+..
T Consensus 67 ~~~~~L~I~~~~~~DsG~Y~C~~~~ 91 (109)
T cd04983 67 RKSSSLHISAAQLSDSAVYFCALSE 91 (109)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEec
Confidence 3567899999999999999999864
No 300
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.41 E-value=0.01 Score=39.12 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=14.8
Q ss_pred EEEEEcccCCCCCeEEEEEee
Q psy5838 125 WFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
..|.|.+++.+|+|.|.|.+.
T Consensus 74 asL~I~nl~~sDsG~Y~C~V~ 94 (112)
T cd05900 74 ATLEITELRSNDSGTYRCEVM 94 (112)
T ss_pred cEEEEeecccccCEEEEEEEe
Confidence 446677777777777777775
No 301
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.40 E-value=0.015 Score=37.26 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=23.3
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
-....+..++|.|.+.+...+.... |.|.++++
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~----V~W~~~g~ 46 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAV----FTWTPSGG 46 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeE----EEEEECCc
Confidence 3344688999999999866344443 89988543
No 302
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.39 E-value=0.0066 Score=37.70 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=23.1
Q ss_pred CcEEEEEEecccCCC--eEEEEeCCCccccc
Q psy5838 179 ANVTLNCKAQGYPEP--YVMWRREDGANLSY 207 (215)
Q Consensus 179 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~ 207 (215)
+++.|.|.+.|.|.| .+.|++ +|+.+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~ 30 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDF 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEeec
Confidence 468999999999877 579999 8887754
No 303
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.30 E-value=0.033 Score=35.58 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=19.7
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.+..++|.|.+.+..+.. . .+.|.+ ++.
T Consensus 15 ~~~~~tL~C~a~gFyP~~-I----~v~W~k-ng~ 42 (96)
T cd07697 15 KQGQGIYLCLLENFFPDV-I----QVHWRE-GNS 42 (96)
T ss_pred cCCCEEEEEEEEEEeCCC-e----EEEEEE-CCE
Confidence 456789999999864433 2 289999 444
No 304
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.28 E-value=0.03 Score=36.79 Aligned_cols=32 Identities=13% Similarity=0.366 Sum_probs=22.3
Q ss_pred EEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 28 TVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
....|+.++|.|.+.+...... .+.|+| ++..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i-----~v~W~k-ng~~ 48 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDI-----TVKWLK-NGNE 48 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCC-----EEEEEE-CCEE
Confidence 3446888999999998644321 189999 5544
No 305
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.24 E-value=0.019 Score=36.96 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.0
Q ss_pred CeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
....|.|.+++.+|+|.|.|.+...
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~ 89 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLS 89 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecC
Confidence 5678999999999999999999653
No 306
>KOG3515|consensus
Probab=96.23 E-value=0.035 Score=47.96 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=29.9
Q ss_pred EEEEEcCCeEEecCCCcceeeecCCcEEEEEEec-ccCCCeEEEEeC
Q psy5838 155 YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRRE 200 (215)
Q Consensus 155 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~ 200 (215)
.+.+..++....+ ......+..|.+..+.|... .+|.+.+.|++.
T Consensus 293 ~tav~~~~~~~~I-st~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~ 338 (741)
T KOG3515|consen 293 ITAVQVKPTAVPI-STSDSGLSSGRSARSSCVSSSSKPPAHIAWYKD 338 (741)
T ss_pred eeecccccccccc-cCcccccccccccccceeccCCCCccceeeecc
Confidence 3444455544333 33344478899999998764 578889999993
No 307
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.19 E-value=0.047 Score=34.36 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.1
Q ss_pred eEEEEEcccCCCCCeEEEEEeec
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
...+.|.+++.+|+|.|+|...+
T Consensus 52 ~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 52 KAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred eEEEEccCCChhHCEEEEEEEEC
Confidence 45589999999999999999865
No 308
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.18 E-value=0.012 Score=38.55 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=49.1
Q ss_pred eCCcEEEEEEeeccCCc----cceeeeEEEEEEecC---Cc--cEEEe-eece----eeeCCceEEEEcC--CceEEEEE
Q psy5838 31 VGRDALLACVVDNLKGF----KGLRIGWQVAWVRVD---TQ--TILSI-HHNV----ITQNPRISLTYND--HRSWFLNI 94 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~----~~~~~~~~v~W~~~~---~~--~~~~~-~~~~----~~~~~~~~~~~~~--~~~~~l~i 94 (215)
.|++|+|+|.+...+.. ..++ +.|.+.. +. ..+.. .... -...+|+.+.... ....+|.|
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~----I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i 76 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPR----IKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVL 76 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCE----EEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEE
Confidence 47899999998754321 2344 7887752 11 11111 1111 1334677776532 35789999
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|.|.+..
T Consensus 77 ~nv~~~D~G~Y~C~v~~ 93 (110)
T cd05902 77 SRLRYSDSGTYRCEVVL 93 (110)
T ss_pred CCCCHHHCEEEEEEEEE
Confidence 99999999999998764
No 309
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.14 E-value=0.013 Score=39.43 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEeCCcEEEEEEeeccCC--ccceeeeEEEEEEecCCccEEE
Q psy5838 29 VTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRVDTQTILS 68 (215)
Q Consensus 29 ~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~~~~~~~ 68 (215)
....++|.|+|.+..... ...+ .+.|.. ++..++.
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m----~VkWk~-~~~~If~ 60 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEM----YVKWKF-KNKDIFI 60 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGE----EEEEEE-TTEEEEE
T ss_pred EecCCCEEEEeEeccccccccceE----EEEEEE-CCeEEEE
Confidence 346889999999975211 1122 289988 4455443
No 310
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.14 E-value=0.34 Score=39.49 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=54.1
Q ss_pred EEEEEcccCCCCCeEEEEEeec-CCCc--ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC--eEEEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT-DPMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP--YVMWR 198 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~ 198 (215)
..|.|..++..+.|.|+=...+ .+.. ...+.+....+|.+.+... .+.+|+...-.|.+.. +|+. .++|+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH----PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 4589999999999999865432 1222 2333444467888765421 3678999999999966 5654 58999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
. ||.++.
T Consensus 274 ~-dg~~V~ 280 (486)
T PHA03273 274 K-NAKEVD 280 (486)
T ss_pred e-CCeecc
Confidence 9 887776
No 311
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.14 E-value=0.0092 Score=38.45 Aligned_cols=31 Identities=35% Similarity=0.679 Sum_probs=24.1
Q ss_pred eecCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
...++.+.|.|.+.| +|.. .+.|++ ||..+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 446788999999998 5643 799999 777663
No 312
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.10 E-value=0.014 Score=37.53 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=26.6
Q ss_pred ceeeecCCcEEEEEEecc-cCCCe--EEEEeCCCcccc
Q psy5838 172 DLVVREQANVTLNCKAQG-YPEPY--VMWRREDGANLS 206 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~ 206 (215)
+..+.+|+.++|.|.+.+ .|.+. |.|++ ++..+.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~ 46 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLS 46 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcc
Confidence 334679999999999977 68776 79999 666554
No 313
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.07 E-value=0.014 Score=38.58 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=10.1
Q ss_pred EEEEcccCCCCCeEEEEEee
Q psy5838 126 FLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~ 145 (215)
+|.|.+++.+|+|.|.|.+.
T Consensus 80 sL~I~~v~~~D~G~Y~C~v~ 99 (115)
T cd05880 80 SILIWQLQPTDNGTYTCQVK 99 (115)
T ss_pred EEEEeeCChhhCEEEEEEEE
Confidence 34455555555555555543
No 314
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.06 E-value=0.55 Score=37.96 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..+.|...-+.+.+..|+.|.+.|.+..... .++ . -.|..+.+.. ......-. .....-+...-..++.|...
T Consensus 76 ~~~~~~C~~~~vsa~yg~~v~i~C~~~~~~~--~~R--L-eiwr~~~~~~-~~~~~~P~-~~~~~l~n~~a~~~g~l~y~ 148 (466)
T PHA03270 76 PPAPFRCKRPDVLARYGSRVQIRCRFPRPTA--EFR--L-QIWRVAAAPS-EEIRPAPI-EPGAVLVNVTAPPGGELVYD 148 (466)
T ss_pred CCCCEEecCcccccccCccEEEEecccCCCC--ceE--E-EEEEeccCCc-cccCCCCC-CcccceeecccCCCceEEec
Confidence 3455777788899999999999999985532 222 2 2464421110 00000000 00000011111123445544
Q ss_pred cceecCCEEEEEEccCCC--ceEE-EEc-cCCeEEEEEcccCCCCCeEEEEEeecC-C--CcceeeEEEEEcCCeEEecC
Q psy5838 96 NVQESDRGWYMCQVNTNP--RISL-TYN-DHRSWFLNIKNVQESDRGWYMCQVNTD-P--MRSRQGYLQVVVPPSIIDKD 168 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~--~~~~-~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~ 168 (215)
++...-.+.|.-..-..| .+.+ ... ..-.-.|.|..++....|.|+=...+. . .....+++....+|.+.+..
T Consensus 149 sa~~~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~ 228 (466)
T PHA03270 149 SAPNRTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP 228 (466)
T ss_pred cCccccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC
Confidence 433211222221111111 0110 001 111234889999999999998876332 2 22233556666788876542
Q ss_pred CCcceeeecCCcEEEEEEecc-cCCC--eEEEEeCCCcccc
Q psy5838 169 TSTDLVVREQANVTLNCKAQG-YPEP--YVMWRREDGANLS 206 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~ 206 (215)
. .+..|+...-.|.+.. +|+- .++|+. |+.++.
T Consensus 229 ~----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~-ng~~V~ 264 (466)
T PHA03270 229 H----AVLEGEPFGATCVAANYYPGDRAAFRWFE-GGDEVF 264 (466)
T ss_pred C----ccccCCCceEEEEeeeecCCCceEEEEEe-CCcccc
Confidence 2 2678999999999966 5654 589999 777765
No 315
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.04 E-value=0.017 Score=38.25 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=11.1
Q ss_pred EEEEcccCCCCCeEEEEEee
Q psy5838 126 FLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~ 145 (215)
.|.|.+++.+|+|.|.|.+.
T Consensus 81 sL~I~~v~~~D~G~Y~C~v~ 100 (116)
T cd05715 81 SIVIHNLQFTDNGTYTCDVK 100 (116)
T ss_pred EEEEeeCCcccCEEEEEEEE
Confidence 35555555555555555554
No 316
>PHA02633 hypothetical protein; Provisional
Probab=96.00 E-value=0.02 Score=32.88 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=13.0
Q ss_pred EEEcccCCCCCeEEEEEeec
Q psy5838 127 LNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~ 146 (215)
|.|.++..+|+|.|.|...+
T Consensus 20 Lwilpa~~sDSGiYiC~~rn 39 (63)
T PHA02633 20 MLILNPTQSDSGIYMCITKN 39 (63)
T ss_pred EEEeccccccCcEEEEEEcC
Confidence 55666666677777776653
No 317
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.97 E-value=0.021 Score=33.64 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=13.5
Q ss_pred CCcEEEEEEeeccCCccceeeeEEEEEEe
Q psy5838 32 GRDALLACVVDNLKGFKGLRIGWQVAWVR 60 (215)
Q Consensus 32 G~~v~L~C~~~~~~~~~~~~~~~~v~W~~ 60 (215)
.+.|.|.|... .+ +.|++
T Consensus 6 ~~~V~L~C~~~----ts-------i~W~k 23 (69)
T cd07691 6 EGKVFLKCNGA----TN-------ITWKK 23 (69)
T ss_pred CceEEEEecCC----Cc-------EEEec
Confidence 45799999752 33 99999
No 318
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.95 E-value=0.15 Score=40.82 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=96.2
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEE----eeeceeeeCCceEEEEcCC----
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS----IHHNVITQNPRISLTYNDH---- 87 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---- 87 (215)
-.|.+....+++.++..++-.+.|...-.+... -.|..=.-..++. .-+.+.....|+.-.+.-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
T PHA03271 93 KMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSD-------NEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDY 165 (490)
T ss_pred cCCceeeccceEEEEEcCCCcEEEEEEeCCCCc-------chhhhheeeeeecchhhcccccchhhhhhcccccCCCccc
Confidence 367888888899999999989999987554433 4562210000000 0000000001110000000
Q ss_pred --ceEEEEEccceecCCEEEEEEcc--CCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec---CCCcceeeEEEE-E
Q psy5838 88 --RSWFLNIKNVQESDRGWYMCQVN--TNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT---DPMRSRQGYLQV-V 159 (215)
Q Consensus 88 --~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~---~~~~~~~~~l~v-~ 159 (215)
..-+-.|..+.+...|.|+-... ++.-+.+.......-.|.|.++...+.|-|+-...+ .....+.+.+.+ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~ 245 (490)
T PHA03271 166 AYPRPSELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ 245 (490)
T ss_pred cCCCHHHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe
Confidence 00112234444555555544322 233333333444566789999999999955444332 222333344444 3
Q ss_pred cCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC--eEEEEeCCCccccc
Q psy5838 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP--YVMWRREDGANLSY 207 (215)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~~~~~~ 207 (215)
.||.+.+... .+..|+...-.|.+.. +|+- .++|+. ||.++..
T Consensus 246 RPPsVsV~a~----PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~-nG~~V~~ 291 (490)
T PHA03271 246 RPASVDVLAP----PVLSGENYKASCIVRHFYPPGSVYVSWRQ-NGNIATP 291 (490)
T ss_pred cCCCccccCC----ccccCCCceEEEEeeeecCCCceEEEEEe-CCccccC
Confidence 5666665422 2678999999999976 5654 589999 7776643
No 319
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.93 E-value=0.013 Score=36.23 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=20.6
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.| .|.+.|+|++ ++..+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~ 27 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELT 27 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECc
Confidence 679999977 6888999999 676654
No 320
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.90 E-value=0.047 Score=35.42 Aligned_cols=26 Identities=50% Similarity=0.813 Sum_probs=22.6
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
.....|.|.+++.+|+|.|.|.+...
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 35678999999999999999998654
No 321
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.86 E-value=0.015 Score=38.40 Aligned_cols=44 Identities=27% Similarity=0.674 Sum_probs=28.9
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
+|.+.+.. +....+..++.+.|.|.+.+ +|.. .+.|++ ||+.+.
T Consensus 2 ~P~V~v~~-ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~ 47 (115)
T cd05769 2 PPTVAIFP-PSEAEIRNKRKATLVCLATGFYPDHVSLSWKV-NGKEVT 47 (115)
T ss_pred CCEEEEEC-cChHHhccCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence 35544442 22223445778999999998 4764 799999 776654
No 322
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=95.82 E-value=0.019 Score=35.75 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.8
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccC
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
++.+..|+++.|.|...+. .+.+.|++ ||..+..+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~~ 40 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQF 40 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCCc
Confidence 4568899999999999875 67999999 888776543
No 323
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=95.80 E-value=0.017 Score=37.32 Aligned_cols=7 Identities=14% Similarity=0.781 Sum_probs=5.6
Q ss_pred EEEEecC
Q psy5838 56 VAWVRVD 62 (215)
Q Consensus 56 v~W~~~~ 62 (215)
+.|+|++
T Consensus 43 v~WyK~~ 49 (104)
T cd05896 43 LMWYKSS 49 (104)
T ss_pred EEEEECC
Confidence 8999954
No 324
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.79 E-value=0.018 Score=37.29 Aligned_cols=31 Identities=35% Similarity=0.789 Sum_probs=23.8
Q ss_pred eecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
+..|..++|.|.+.|+ |.. .++|++ ||+.+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 3457889999999994 654 689999 776553
No 325
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=95.78 E-value=0.03 Score=35.98 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.7
Q ss_pred cceeeecCCcEEEEEEecccCCCe-EEEEeCCCccc
Q psy5838 171 TDLVVREQANVTLNCKAQGYPEPY-VMWRREDGANL 205 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~ 205 (215)
..+.+.+|+++.|.|.+.++|+|. +.|.+ ++..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l 45 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTL 45 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCccc
Confidence 355689999999999999999997 99999 55544
No 326
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.74 E-value=0.32 Score=39.86 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=56.5
Q ss_pred CeEEEEEcccCCCCCeEEEEEeec--C--CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC--eE
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNT--D--PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP--YV 195 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~--~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i 195 (215)
....|.|..++..+.|.|+=.+.+ . ......+++.+..+|.+.+.. ..+.+|+...-.|.+.. +|+. .+
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p----~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG----DPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC----CccccCCCceEEEEeeeecCCCceEE
Confidence 445699999999999999866532 1 123344567777788776542 13678999999999966 5654 58
Q ss_pred EEEeCCCcccc
Q psy5838 196 MWRREDGANLS 206 (215)
Q Consensus 196 ~W~~~~~~~~~ 206 (215)
+|+. ||.++.
T Consensus 363 rWf~-ng~~V~ 372 (566)
T PHA03269 363 KWTS-NFGNIG 372 (566)
T ss_pred EEEe-CCcccC
Confidence 9999 776665
No 327
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.64 E-value=0.039 Score=35.78 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred CeEEEEEcccCCCCCeEEEEEee
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
....|.|.+++.+|+|.|.|.+.
T Consensus 69 ~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 69 TDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred CEEEEEECCCChHHCEEEEEEEe
Confidence 45679999999999999999984
No 328
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.64 E-value=0.019 Score=35.59 Aligned_cols=25 Identities=24% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.| +|.+.++|++ ||..+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~ 27 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIK 27 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECc
Confidence 579999987 6878899999 777654
No 329
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.52 E-value=0.022 Score=35.32 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=20.7
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.+ +|.+.|+|++ +|..+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~ 27 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELE 27 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECC
Confidence 679999987 5888999999 776654
No 330
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.48 E-value=0.07 Score=34.00 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred CeEEEEEcccCCCCCeEEEEEee
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
....|.|.+++.+|+|.|.|.+.
T Consensus 61 ~~~~L~I~~~~~~Dsg~Y~C~~~ 83 (98)
T cd04984 61 NTASLTISGAQTEDEADYYCQVW 83 (98)
T ss_pred CEEEEEECCCChhhCEEEEEEEc
Confidence 55679999999999999999875
No 331
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=95.46 E-value=0.029 Score=34.95 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=22.8
Q ss_pred CcEEEEEEecc--cCCCeEEEEeCCCccccc
Q psy5838 179 ANVTLNCKAQG--YPEPYVMWRREDGANLSY 207 (215)
Q Consensus 179 ~~~~l~C~~~~--~p~~~i~W~~~~~~~~~~ 207 (215)
+++.|.|.+.+ .+.+.+.|++ ||+.|..
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~ 30 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDF 30 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE-CCEECcc
Confidence 46899999976 4567899999 8988864
No 332
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.46 E-value=0.049 Score=34.62 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=24.5
Q ss_pred ecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 176 REQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 176 ~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
..|....|.|.+.| +|.. .++|++ ||+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence 36889999999999 5665 789999 7776543
No 333
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.44 E-value=0.025 Score=34.90 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=20.6
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
+.|.|.+.+ +|.+.++|++ +|..+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence 579999977 5888999999 777654
No 334
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.42 E-value=0.022 Score=34.53 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.1
Q ss_pred CCeEEEEEcccCCCCCeEEEEEe
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQV 144 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~ 144 (215)
.....|+|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 45677999999999999999964
No 335
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.41 E-value=0.049 Score=34.61 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred cCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 177 EQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 177 ~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
.+...+|.|.+.| +|.. .+.|.+ ||..+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~ 44 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVT 44 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE-CCeEcc
Confidence 4666899999999 5654 689999 777654
No 336
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.24 E-value=0.029 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=23.5
Q ss_pred eecCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
...+..+.|.|.+.+ +|.. .++|.+ ||..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 334677899999999 5655 689999 777653
No 337
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.20 E-value=0.039 Score=35.17 Aligned_cols=19 Identities=32% Similarity=1.004 Sum_probs=9.6
Q ss_pred EEEcccCCCCCeEEEEEee
Q psy5838 127 LNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~ 145 (215)
|.|.+++.+|+|.|.|.+.
T Consensus 66 L~I~~v~~~DsG~Y~C~~~ 84 (98)
T cd05716 66 VTLNQLRKEDAGWYWCGVG 84 (98)
T ss_pred EEEcCCCHHHCEEEEEEcc
Confidence 4455555555555555443
No 338
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.17 E-value=0.06 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=23.2
Q ss_pred ecCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 176 REQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 176 ~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
..|....|.|.+.| +|+. .+.|++ ||..+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence 34666789999999 5654 689999 887654
No 339
>PHA02633 hypothetical protein; Provisional
Probab=95.15 E-value=0.021 Score=32.78 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.5
Q ss_pred ceEEEEEccceecCCEEEEEEccCC
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
+...|.|-++..+|+|.|.|...+.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~ 40 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNE 40 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCC
Confidence 4458999999999999999988764
No 340
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.13 E-value=0.15 Score=32.44 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=18.6
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.++.++|.|.+.+..+.. . .+.|+|+
T Consensus 15 ~~~~~~L~C~a~gFyP~~-i----~vtW~k~ 40 (95)
T cd04985 15 SSDSVTLGCLATGFLPEP-V----TFTWNSG 40 (95)
T ss_pred CCCcEEEEEEEeeEECCC-c----EEEEeEC
Confidence 356799999999864433 2 2899994
No 341
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.11 E-value=0.065 Score=33.88 Aligned_cols=25 Identities=44% Similarity=0.974 Sum_probs=20.8
Q ss_pred CCcEEEEEEeccc-CCC-eEEEEeCCCc
Q psy5838 178 QANVTLNCKAQGY-PEP-YVMWRREDGA 203 (215)
Q Consensus 178 g~~~~l~C~~~~~-p~~-~i~W~~~~~~ 203 (215)
++.+.|.|.+.|+ |.+ .+.|++ +|.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence 6789999999995 655 799999 664
No 342
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.07 E-value=0.036 Score=34.95 Aligned_cols=31 Identities=35% Similarity=0.670 Sum_probs=25.0
Q ss_pred ecCCcEEEEEEeccc-CC-CeEEEEeCCCccccc
Q psy5838 176 REQANVTLNCKAQGY-PE-PYVMWRREDGANLSY 207 (215)
Q Consensus 176 ~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 207 (215)
..|..+.|.|.+.|+ |. ..++|++ ||..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCC
Confidence 468999999999996 64 5799999 7776643
No 343
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.73 E-value=0.3 Score=31.21 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=21.1
Q ss_pred EeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 30 TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+|..+++.|.+.+-....... +.|++++
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~----v~LlkG~ 41 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLE----IELLKGE 41 (99)
T ss_pred cCCceEEEEEEecCcccCCceE----EEEecCc
Confidence 6899999999998654433332 8898843
No 344
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=94.73 E-value=0.066 Score=34.96 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=26.2
Q ss_pred CCcceeeecCCcEEEEEEecccCCCeEEEEeCC
Q psy5838 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~ 201 (215)
.+..+.+.+|++++|.|...+ +.+.+.|++..
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 345667899999999999987 66789999953
No 345
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=94.62 E-value=0.038 Score=34.51 Aligned_cols=27 Identities=41% Similarity=0.938 Sum_probs=21.3
Q ss_pred CCcEEEEEEec-ccCCCeEEEEeCCCccc
Q psy5838 178 QANVTLNCKAQ-GYPEPYVMWRREDGANL 205 (215)
Q Consensus 178 g~~~~l~C~~~-~~p~~~i~W~~~~~~~~ 205 (215)
|+.+.+.|.+. ++|.|.++|+. ++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~-~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYL-DGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEE-TTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEE-CCCce
Confidence 67999999875 58999999999 55544
No 346
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.52 E-value=0.77 Score=29.67 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=14.0
Q ss_pred EEEEEcccCCCCCeEEEEEeecCC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDP 148 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~ 148 (215)
..|.|..++..|+|.|.-++.+..
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~s 94 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNES 94 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETT
T ss_pred ceEEEeecCcccCceEEEEEEcCC
Confidence 346677777777777766665433
No 347
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.28 E-value=0.23 Score=28.17 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
...|.+..++..|.|.|.|.+...
T Consensus 42 ~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 42 SSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred EEEEEECccCcccCcEEEEEEecC
Confidence 355889999999999999998654
No 348
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.19 E-value=0.07 Score=40.11 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=34.0
Q ss_pred EEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEcc
Q psy5838 56 VAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 56 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
+.|...+++.+ ..+.+++++.. |.|.+.+...+++|.|+|...
T Consensus 15 y~W~GP~g~~l--------~gn~~~nIT~T----G~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 15 YLWTGPNGKPL--------SGNSYVNITET----GKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred eEEECCCCccc--------CCCCeEEEccC----ceEEeeccccccCCceEEEEE
Confidence 78988777765 34566666654 489999999999999999865
No 349
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=94.16 E-value=0.033 Score=35.65 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=26.3
Q ss_pred CceEEEEc--CCceEEEEEccceecCCEEEEEEccCCC
Q psy5838 78 PRISLTYN--DHRSWFLNIKNVQESDRGWYMCQVNTNP 113 (215)
Q Consensus 78 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 113 (215)
+|+.+... .....+|.|.+++.+|+|.|+|.+.+.+
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 88 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDG 88 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCC
Confidence 46655432 2356799999999999999999877543
No 350
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.13 E-value=0.19 Score=33.06 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=25.7
Q ss_pred CceEEEEc-cCCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 113 PRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 113 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.++.+... ......|.|.+++.+|+|.|.|.+..
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 34555432 34567899999999999999999864
No 351
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=93.80 E-value=0.24 Score=35.46 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=27.1
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEc
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVV 160 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~ 160 (215)
.....|.|.+++.+|+|.|.|.....+ ..+...-|.|..
T Consensus 82 ~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 82 FNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 345678899999999999999986543 334444466653
No 352
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.79 E-value=0.83 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=22.8
Q ss_pred CceEEEeCCcEEE-EEEeec-cCCccceeeeEEEEEEec
Q psy5838 25 PNVTVTVGRDALL-ACVVDN-LKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 25 ~~~~~~~G~~v~L-~C~~~~-~~~~~~~~~~~~v~W~~~ 61 (215)
..+.+.+|+.+.+ .|...+ .|... +.|+.+
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~-------IsW~~~ 40 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAAD-------VTWETN 40 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCE-------eEEeCC
Confidence 3566778999999 888774 56666 999974
No 353
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=93.64 E-value=0.13 Score=31.09 Aligned_cols=24 Identities=38% Similarity=0.848 Sum_probs=19.0
Q ss_pred EEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 181 VTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 181 ~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
+.|.|.+.|+ |+. .+.|++ ||+.+
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence 5799999984 664 799999 77753
No 354
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=93.61 E-value=0.16 Score=33.37 Aligned_cols=31 Identities=29% Similarity=0.753 Sum_probs=25.4
Q ss_pred CcceeeecCCcEEEEEEecc--cCCCeEEEEeC
Q psy5838 170 STDLVVREQANVTLNCKAQG--YPEPYVMWRRE 200 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~ 200 (215)
+..+.+.+|++++|.|...+ .+.+.+.|++.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 44556789999999999876 56778999995
No 355
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=93.60 E-value=0.098 Score=34.75 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeec
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
..+..|.|.+++.+|+|.|.|.+..
T Consensus 77 ~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 77 KKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred CCEEEEEEccCChhhCeEEEEEEEc
Confidence 4557799999999999999999854
No 356
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=93.38 E-value=1 Score=28.10 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=29.4
Q ss_pred EEEEccCC--CceEEEEccC----------CeEEEEEcccCCCCCeEEEEEeec
Q psy5838 105 YMCQVNTN--PRISLTYNDH----------RSWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 105 Y~C~~~~~--~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
-+|..... |.+.+.|... .+..|.+..+...|+|..+|.+..
T Consensus 19 Ltl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 19 LTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred EEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE
Confidence 34555432 3347777432 446689999999999999999964
No 357
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.36 E-value=0.26 Score=31.37 Aligned_cols=27 Identities=37% Similarity=0.822 Sum_probs=21.5
Q ss_pred cCCcEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy5838 177 EQANVTLNCKAQGY-PEP-YVMWRREDGAN 204 (215)
Q Consensus 177 ~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 204 (215)
.++.+.|.|.+.++ |.. .++|++ ||+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k-~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNS-GSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence 46779999999994 654 689999 7765
No 358
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=93.20 E-value=0.17 Score=31.15 Aligned_cols=29 Identities=34% Similarity=0.786 Sum_probs=23.1
Q ss_pred cCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 177 EQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 177 ~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
.+..+.|.|.+.+ +|.. .+.|++ +|..+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~ 37 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLK-NGKEVT 37 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEE-TTEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEe-ccceee
Confidence 4899999999998 5655 699999 776554
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=93.14 E-value=1.4 Score=27.98 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCcEEEEEEee-ccCCccceeeeEEEEEEec
Q psy5838 32 GRDALLACVVD-NLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 32 G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~ 61 (215)
.....+.|... +.|.+. +.|+++
T Consensus 15 ~~~~va~C~s~~gkP~a~-------ItW~~~ 38 (95)
T cd05719 15 EPVTVATCVSANGKPPAT-------ISWETT 38 (95)
T ss_pred CccEEEEEECCCCcCCCE-------EEEEeC
Confidence 34567889985 567776 999994
No 360
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.03 E-value=0.13 Score=32.83 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.5
Q ss_pred eecCCcEEEEEEeccc--CCC-eEEEEeCCCc
Q psy5838 175 VREQANVTLNCKAQGY--PEP-YVMWRREDGA 203 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~--p~~-~i~W~~~~~~ 203 (215)
+..|+.++|.|.+.|+ |+. .++|.++++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 5568999999999988 544 6899994333
No 361
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=93.01 E-value=0.14 Score=32.53 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=22.1
Q ss_pred cCCcEEEEEEecc-cCCC-eEEEEeCCCccc
Q psy5838 177 EQANVTLNCKAQG-YPEP-YVMWRREDGANL 205 (215)
Q Consensus 177 ~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~ 205 (215)
.+..+.|.|.+.| +|.. .+.|++ ||..+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 4567899999999 5653 799999 77765
No 362
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=92.58 E-value=0.2 Score=32.34 Aligned_cols=23 Identities=39% Similarity=0.901 Sum_probs=20.4
Q ss_pred CeEEEEEcccCCCCCeEEEEEee
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
....|.|.+++.+|+|.|.|.+.
T Consensus 67 ~~~~L~I~~~~~sDsgtY~Ca~~ 89 (104)
T cd05720 67 NSFVLTLKNFQKENEGYYFCSVA 89 (104)
T ss_pred CEEEEEECCCCHHHCEEEEEEEc
Confidence 55679999999999999999874
No 363
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=92.48 E-value=1.1 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.6
Q ss_pred eEEEEEcccCCCCCeEEEEEee
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
...+.|..++.+|+|.|.|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 3457899999999999999974
No 364
>KOG1480|consensus
Probab=91.93 E-value=0.11 Score=44.75 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=63.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
+-.|...+.--.|..+..+.|.|+.. +.+... +.|++++ ..+ ..+..... .....+.+.
T Consensus 129 rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae-------~~w~k~e-~~~--------~pd~n~~~----~~d~~li~~ 188 (909)
T KOG1480|consen 129 RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAE-------VEWLKNE-VVI--------DPDANVIR----ASDHNLIIS 188 (909)
T ss_pred HHhhccChhhheecccccccccccCcccchhhh-------hhccccC-CCC--------Cccccchh----hhcCCcccc
Confidence 34566777777888899999999975 334444 8999954 322 11111111 123478899
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEe
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 144 (215)
.+...|+|+|+|++.+--.-.-++ .....+.+.....++..+|.|.+
T Consensus 189 ~arlsd~~nytc~a~ni~~~r~~~--~~~v~vyv~ggwsswt~w~~c~~ 235 (909)
T KOG1480|consen 189 QARLSDSGNYTCEATNIVAKRKSD--PATVQVYVNGGWSEWTEWSTCNV 235 (909)
T ss_pred chhhhhcccceeeeehhhcccccc--ceEEEEEEcCcccccccceeeee
Confidence 999999999999998632111111 11223445555556666665554
No 365
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.78 E-value=0.39 Score=30.84 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=21.6
Q ss_pred eecCCcEEEEEEecc-c-CCC-eEEEEeCCCc
Q psy5838 175 VREQANVTLNCKAQG-Y-PEP-YVMWRREDGA 203 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~-~-p~~-~i~W~~~~~~ 203 (215)
...+..++|.|.+.+ + |.. .+.|.+ +|.
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~-~g~ 46 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTP-SGG 46 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEE-CCc
Confidence 446889999999988 5 543 699999 544
No 366
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.74 E-value=1.5 Score=35.20 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=48.5
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc---EEEee------eceeeeCCceEEEE-----cCCce
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT---ILSIH------HNVITQNPRISLTY-----NDHRS 89 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~---~~~~~------~~~~~~~~~~~~~~-----~~~~~ 89 (215)
.+++.+..|..|.|.|.+..-...... ...|+.. +.+ +.... ......++.+.+.. .+-..
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~----~~~w~~t-~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~ 345 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNENIS----NAKWIDT-GFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKN 345 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcccc----cceEEec-CCcccceeEEEEecceeecccccCCceEEEEecccccchhh
Confidence 457778889999999998852222211 1788773 222 21110 00112223333331 22345
Q ss_pred EEEEEccceecCCEEEEEEccC
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
.+|.|.+++.+.+|.|.|++..
T Consensus 346 STLTIkka~I~N~GCY~~~a~~ 367 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFM 367 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEec
Confidence 6888888888888888888864
No 367
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=91.68 E-value=0.12 Score=34.18 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=49.0
Q ss_pred eCCcEEEEEEeeccC--------CccceeeeEEEEEEec----C-----CccEEEeeece----eeeCCceEEEEc--CC
Q psy5838 31 VGRDALLACVVDNLK--------GFKGLRIGWQVAWVRV----D-----TQTILSIHHNV----ITQNPRISLTYN--DH 87 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~--------~~~~~~~~~~v~W~~~----~-----~~~~~~~~~~~----~~~~~~~~~~~~--~~ 87 (215)
.|++|+|+|.+...| .+.+++ |.|.+- + ...++...... -...+|+.+... ..
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~r----IkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~ 76 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLR----IKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQ 76 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcE----EEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcC
Confidence 378999999999543 234566 555442 1 12222222211 123456666533 23
Q ss_pred ceEEEEEccceecCCEEEEEEccCC
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
...+|.|.+++.+|+|.|.|.+...
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEEC
Confidence 5789999999999999999987643
No 368
>PHA03240 envelope glycoprotein M; Provisional
Probab=91.65 E-value=0.38 Score=34.93 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=20.1
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEe
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVR 60 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~ 60 (215)
.++.+.+|++|+|.-.-...+... +.|++
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~-------v~Wy~ 59 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQK-------AHWYK 59 (258)
T ss_pred eecccccCCceeeCCcccCCCCCE-------EEEEe
Confidence 367788999999874433233333 99999
No 369
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=91.54 E-value=0.2 Score=32.54 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=15.0
Q ss_pred EEEEEcccCCCCCeEEEEEee
Q psy5838 125 WFLNIKNVQESDRGWYMCQVN 145 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~ 145 (215)
..|.|.+++.+|+|.|.|...
T Consensus 72 ~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 72 YRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred EEEEECCCCHHHCEEEEEeEc
Confidence 446777777777777777763
No 370
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.16 E-value=6.5 Score=31.82 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=15.7
Q ss_pred CCceEEEeCCcE-EEEEEeecc
Q psy5838 24 IPNVTVTVGRDA-LLACVVDNL 44 (215)
Q Consensus 24 ~~~~~~~~G~~v-~L~C~~~~~ 44 (215)
+-.+.+..|+.+ .|.|.+...
T Consensus 18 SynIi~~~gd~~~nlTCiLP~~ 39 (500)
T PHA02914 18 SYNIFLRNEDEELALTCILPAA 39 (500)
T ss_pred cceEEEecCceEEeeEEEcCCC
Confidence 346777788887 999998643
No 371
>KOG4597|consensus
Probab=91.15 E-value=0.48 Score=38.77 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=51.8
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec--CCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV--DTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
+.+..-|....+..|++..+.|.+.|.+.+. |+|-+. ++..++- .++....+.. -.+...|.|-
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~-------V~c~qv~anr~~vv~-~~nq~~e~p~------vtstcql~ic 262 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRV-------VTCEQVFANRENVVM-RPNQTVENPV------VTSTCQLVIC 262 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCce-------eeeehhhccccceee-cCccccCCcc------eeeeeeEEEc
Confidence 3444446667778899999999999888776 999553 1221110 0110011111 1145689999
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
|....|+|.|+|.+.+
T Consensus 263 ~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 263 NEWQADAGWYTCSARC 278 (560)
T ss_pred chhhcCCCceeecccc
Confidence 9999999999999875
No 372
>KOG1480|consensus
Probab=90.72 E-value=0.44 Score=41.38 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..|.|+..+++..+..|.++.|.|.....+ ...++..-+|..+
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~---~i~~kc~~~wv~~ 65 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPAT---QIRFKCNSEWVHQ 65 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCccc---ccccccChhhhcC
Confidence 578899999999999999999999976322 1222233467664
No 373
>PHA03042 CD47-like protein; Provisional
Probab=90.49 E-value=0.96 Score=34.36 Aligned_cols=33 Identities=15% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCccE
Q psy5838 29 VTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 29 ~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~~~ 66 (215)
-...++|.++|.+...... ... .+.|.. ++..+
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~----~V~Wkf-~~~~I 62 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNI----HINWKF-NNKVI 62 (286)
T ss_pred EecCceEEEEeecCChhhcCccce----EEEEEe-CCeeE
Confidence 3468899999999864211 111 288988 44433
No 374
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=90.20 E-value=3.3 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.1
Q ss_pred cEEEEEEee-ccCCccceeeeEEEEEEec
Q psy5838 34 DALLACVVD-NLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 34 ~v~L~C~~~-~~~~~~~~~~~~~v~W~~~ 61 (215)
.+.+.|... +.|... +.|+++
T Consensus 17 ~~va~C~s~~gkPaa~-------IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPAR-------ISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcE-------EEEEcC
Confidence 578899877 456666 999985
No 375
>PHA03052 Hypothetical protein; Provisional
Probab=89.77 E-value=1.7 Score=25.45 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|+.+.+..|..+++.|.+.-.+...... |.|.-++
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~----V~W~~N~ 38 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDAD----VFWISNG 38 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceE----EEEEeCC
Confidence 4778899999999999988433332332 8887743
No 376
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=88.94 E-value=1 Score=28.81 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=23.9
Q ss_pred cceeeecCCcEEE-EEEe-cccCCCeEEEEeC
Q psy5838 171 TDLVVREQANVTL-NCKA-QGYPEPYVMWRRE 200 (215)
Q Consensus 171 ~~~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~ 200 (215)
....+.+|..+.+ .|.+ .|.|.+.|+|+.+
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 3445778888888 8988 5689999999984
No 377
>PHA03052 Hypothetical protein; Provisional
Probab=87.17 E-value=2.9 Score=24.56 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=25.2
Q ss_pred ceeeecCCcEEEEEEec-ccC--CCeEEEEeCCCccc
Q psy5838 172 DLVVREQANVTLNCKAQ-GYP--EPYVMWRREDGANL 205 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~-~~p--~~~i~W~~~~~~~~ 205 (215)
...+..|..+++.|.+. +.| .+.+.|.. |++.+
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~ 41 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY 41 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence 44578899999999984 333 45789999 77777
No 378
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=85.98 E-value=1.8 Score=28.56 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=23.0
Q ss_pred cceeeecCCcEEEEEEecccC--CCeEEEEeCC
Q psy5838 171 TDLVVREQANVTLNCKAQGYP--EPYVMWRRED 201 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~ 201 (215)
....+.+|++++|.|.....- ...+.|++..
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~ 37 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQA 37 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEEC
Confidence 345688999999999875432 3568999863
No 379
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=85.40 E-value=5.5 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=23.2
Q ss_pred eEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEc
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV 160 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~ 160 (215)
+..|.+-....+-.|.|.|.+.. ......|+|.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVyY 65 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE---PNKEKTLQVYY 65 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc---CCCcEEEEEEE
Confidence 34577778887889999998754 33445566653
No 380
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=84.73 E-value=1.1 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=19.5
Q ss_pred ecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 176 REQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 176 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
..|.+++|+|...+. .+.|.+ |++.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~-n~~~~~ 31 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKK-NDQVSQ 31 (65)
T ss_pred EeccEEEEECCCCCC---CceEEe-CCccCC
Confidence 468999999987532 399999 554443
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=83.48 E-value=2.3 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.1
Q ss_pred eecCCcEEEEEEecc-cCC--CeEEEEeCCCc
Q psy5838 175 VREQANVTLNCKAQG-YPE--PYVMWRREDGA 203 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~-~p~--~~i~W~~~~~~ 203 (215)
..+|..+++.|.+.+ +|. ..+.|++ +..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~ 42 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GET 42 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-Ccc
Confidence 468999999999976 676 4799988 443
No 382
>PHA03189 UL14 tegument protein; Provisional
Probab=80.56 E-value=25 Score=27.45 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=19.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCCcc
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFK 48 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~ 48 (215)
+.+..+..|+.|++.|.+..+.-+.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPe 83 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPE 83 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCce
Confidence 5567788999999999998665443
No 383
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=80.41 E-value=2.9 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=18.7
Q ss_pred CCcEEEEEEe-cccCCCeEEEEeC
Q psy5838 178 QANVTLNCKA-QGYPEPYVMWRRE 200 (215)
Q Consensus 178 g~~~~l~C~~-~~~p~~~i~W~~~ 200 (215)
.....+.|.+ .|.|.+.|+|+++
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeC
Confidence 3567778999 5689999999994
No 384
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=80.15 E-value=11 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEcccCCCCCeEEEEEeecCCCccee
Q psy5838 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ 153 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 153 (215)
+.+......|+|...|.|.........
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~ 71 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERE 71 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEE
Confidence 456677779999999999533333333
No 385
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=79.28 E-value=3 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=18.1
Q ss_pred CcEEEEEEec-ccCCCeEEEEeC
Q psy5838 179 ANVTLNCKAQ-GYPEPYVMWRRE 200 (215)
Q Consensus 179 ~~~~l~C~~~-~~p~~~i~W~~~ 200 (215)
....+.|.+. |.|.+.|+|+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 4577899885 589999999994
No 386
>PHA03376 BARF1; Provisional
Probab=77.46 E-value=1.6 Score=31.57 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCceEEEEcCCceEEEEEccceecCCEEEEEEccCCC
Q psy5838 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 113 (215)
..++.+..+. ++.+|.|.+++.+|.|.|+|......
T Consensus 75 RGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 75 RGFFDIHRSA-NTFFLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred ccEEEEEecC-CeEEEEEEeeeecCCceEEEEEEcCC
Confidence 3444444333 78899999999999999999887543
No 387
>PHA03270 envelope glycoprotein C; Provisional
Probab=76.11 E-value=43 Score=27.64 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
..|.+...++. +..|+...-.|.+.....+...+ +.||+++.
T Consensus 220 r~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~----lrWf~ng~ 261 (466)
T PHA03270 220 RRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAA----FRWFEGGD 261 (466)
T ss_pred cCCcccccCCc--cccCCCceEEEEeeeecCCCceE----EEEEeCCc
Confidence 35555554443 34799989999998766565554 89999543
No 388
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=72.22 E-value=4.3 Score=30.86 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
+.|.+.+..++++|.|+|....
T Consensus 37 G~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 37 GKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred ceEEeeccccccCCceEEEEEE
Confidence 3499999999999999999854
No 389
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=71.56 E-value=11 Score=24.97 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=22.1
Q ss_pred ceeeecCCcEEEEEEecccCCC---eEEEEeC
Q psy5838 172 DLVVREQANVTLNCKAQGYPEP---YVMWRRE 200 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~ 200 (215)
...+.+|++++|.|..+++-.. .+.|++.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 4557889999999999775333 5789984
No 390
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=71.06 E-value=23 Score=22.19 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=14.6
Q ss_pred CCceEEEeCCcEEEEEEeec
Q psy5838 24 IPNVTVTVGRDALLACVVDN 43 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~ 43 (215)
++...+..|++|+..|.+..
T Consensus 10 p~~pvv~lGS~vtasC~l~~ 29 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQ 29 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-C
T ss_pred cCCCEEeCCCCEEEEEEEEC
Confidence 34567789999999999984
No 391
>PHA03112 IL-18 binding protein; Provisional
Probab=67.94 E-value=28 Score=23.89 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=19.6
Q ss_pred EeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 30 TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..|+++.|.|...+.-+.-. .++|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS-----~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFS-----YVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCce-----EEEEEcCC
Confidence 46999999999885432222 28999755
No 392
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=67.68 E-value=17 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.4
Q ss_pred cEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 34 DALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 34 ~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.++|.|.+.+..+.... +.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~-----v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVA-----AKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccE-----EEEEec
Confidence 58999999987554422 899995
No 393
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=65.85 E-value=21 Score=22.35 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=22.4
Q ss_pred ceeeecCCcEEEEEEeccc-----CCCeEEEEeCCCccc
Q psy5838 172 DLVVREQANVTLNCKAQGY-----PEPYVMWRREDGANL 205 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~ 205 (215)
...+..|++++..|..... +...|.|.. |+..+
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~i 49 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKI 49 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCES
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEEC
Confidence 3457899999999998532 334799999 66644
No 394
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=64.91 E-value=30 Score=21.33 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=17.6
Q ss_pred cEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 180 NVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 180 ~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
...|.+.+.+. .+.+.|+. ||+.+.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~v-dg~~~g 55 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFV-DGEPLG 55 (89)
T ss_pred cceEEEEEeCC-CCcEEEEE-CCEEcc
Confidence 55566666554 44899999 888873
No 395
>PHA03269 envelope glycoprotein C; Provisional
Probab=63.34 E-value=92 Score=26.32 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
.+|.+...++. +.+|+...-.|.+.....+...+ +.|+++++
T Consensus 328 r~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~Svr----lrWf~ng~ 369 (566)
T PHA03269 328 KRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVI----VKWTSNFG 369 (566)
T ss_pred cCCCccccCCc--cccCCCceEEEEeeeecCCCceE----EEEEeCCc
Confidence 35555544433 34799999999998765555554 89999533
No 396
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=58.63 E-value=34 Score=19.88 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=13.6
Q ss_pred EEeCCcEEEEEEeeccCCccceeeeEEEEEEe
Q psy5838 29 VTVGRDALLACVVDNLKGFKGLRIGWQVAWVR 60 (215)
Q Consensus 29 ~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~ 60 (215)
|..|+.++|. |++... |.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~-------V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGP-------VTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCc-------eEEEE
Confidence 5678888875 444334 88983
No 397
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=58.23 E-value=41 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=17.0
Q ss_pred EEEEccceecCCEEEEEEc-cCCC
Q psy5838 91 FLNIKNVQESDRGWYMCQV-NTNP 113 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~-~~~~ 113 (215)
..........|+|.+.|.| .+++
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEEecCCCCCCEEEEEEEcCCce
Confidence 4455566779999999999 5543
No 398
>PHA03273 envelope glycoprotein C; Provisional
Probab=54.77 E-value=1.3e+02 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
.+|.+...++. +.+|+...-.|.+.....+...+ +.|+++++
T Consensus 236 r~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~----~rWf~dg~ 277 (486)
T PHA03273 236 NAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVK----LRWYKNAK 277 (486)
T ss_pred cCCcccccCCc--cccCCCceEEEEeeeecCCCceE----EEEEeCCe
Confidence 35555554433 34799999999998765555554 89999543
No 399
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=54.32 E-value=25 Score=28.08 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=17.2
Q ss_pred cEEEEEEecc-cCCC-eEEEEeC
Q psy5838 180 NVTLNCKAQG-YPEP-YVMWRRE 200 (215)
Q Consensus 180 ~~~l~C~~~~-~p~~-~i~W~~~ 200 (215)
.+.|.|.+.| +|.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999 4655 6899993
No 400
>PHA03271 envelope glycoprotein C; Provisional
Probab=46.49 E-value=1.7e+02 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+|.+...++.+ ..|+.-.-.|.+....++...+ +.|++++
T Consensus 246 RPPsVsV~a~PV--L~Ge~YkAtC~vAnYYPP~Svr----lrWf~nG 286 (490)
T PHA03271 246 RPASVDVLAPPV--LSGENYKASCIVRHFYPPGSVY----VSWRQNG 286 (490)
T ss_pred cCCCccccCCcc--ccCCCceEEEEeeeecCCCceE----EEEEeCC
Confidence 345455544433 4799989999999766665554 8999953
No 401
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=40.83 E-value=82 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.1
Q ss_pred EEE-ccCCCceEEEEccC
Q psy5838 106 MCQ-VNTNPRISLTYNDH 122 (215)
Q Consensus 106 ~C~-~~~~~~~~~~~~~~ 122 (215)
.|. +.|.|...++|...
T Consensus 26 ~CiSa~GrPpa~ItW~t~ 43 (98)
T cd05890 26 TCVSANGKPPSVVRWDTR 43 (98)
T ss_pred EEEcCCCcCCcEeEEEcc
Confidence 687 56889999999543
No 402
>PHA02982 hypothetical protein; Provisional
Probab=40.10 E-value=1.6e+02 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeecCC
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNTDP 148 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 148 (215)
...++|.|.++..+..|=|+|.+....
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~ 123 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAE 123 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCC
Confidence 455779999999999999999997644
No 403
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=37.18 E-value=1.5e+02 Score=20.86 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.6
Q ss_pred CCCCeEEEEEeecC
Q psy5838 134 ESDRGWYMCQVNTD 147 (215)
Q Consensus 134 ~~d~G~Y~C~~~~~ 147 (215)
..|.+.|+|.+.+.
T Consensus 69 s~d~~~~sC~I~RP 82 (158)
T PF10572_consen 69 SDDNGHYSCIIWRP 82 (158)
T ss_pred cCCCCceEEEEECC
Confidence 35778999998654
No 404
>KOG4597|consensus
Probab=34.26 E-value=69 Score=26.91 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.6
Q ss_pred EEEEEEccCCCceEEEEcc---------------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 103 GWYMCQVNTNPRISLTYND---------------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~~---------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
-..+|-+.|.+...++|.. .....|.|.+....|+|+|+|.+... +...+.+.+.
T Consensus 214 cS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 214 CSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS 290 (560)
T ss_pred hcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence 3556777788888888832 12344889999999999999999653 3333334433
No 405
>PF15096 G6B: G6B family
Probab=33.80 E-value=49 Score=23.88 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.5
Q ss_pred EeCCcEEEEEEeecc
Q psy5838 30 TVGRDALLACVVDNL 44 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~ 44 (215)
..|+.|+|.|.--.+
T Consensus 9 rPGDRVnlSCvGVs~ 23 (224)
T PF15096_consen 9 RPGDRVNLSCVGVSH 23 (224)
T ss_pred CCCCeeeeeeccCCC
Confidence 468999999986543
No 406
>PHA02935 Hypothetical protein; Provisional
Probab=32.74 E-value=94 Score=22.78 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=29.8
Q ss_pred EEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEeccc
Q psy5838 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 190 (215)
|.|..++-+|+|.|.-..+-....--..++.+.+...+.-.........+--..+.+.|+.+.+
T Consensus 104 lnisslryedsgsykgvshlkdgvivtttmnisvkaniidltgrvryltrnycevkirceiksf 167 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANIIDLTGRVRYLTRNYCEVKIRCEIKSF 167 (349)
T ss_pred eeccceeeccCCcccCchhhcCceEEEEEEEEEEEeeeEeccceeeeeccccEEEEEEEEEeee
Confidence 6677778888888864432111111122233333333332211111112333567778877543
No 407
>KOG0613|consensus
Probab=31.53 E-value=2.8e+02 Score=26.61 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=54.4
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc-ceeeEEEEE----------
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVV---------- 159 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~---------- 159 (215)
.+.|.+.-..+.|.|.....+.-...-. ........+.+....+.+.|+|.....+.. ...+...+.
T Consensus 246 ~~~i~~~l~~~~G~~~~~~~~~l~e~~~--~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~ 323 (1205)
T KOG0613|consen 246 DRKIQLTLRAPRGPYSAHILGYLIEQRK--HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPES 323 (1205)
T ss_pred heeeeEEeecCCCchHHHHhcchhhhcc--cCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchh
Confidence 4556666666777775443321100000 111122344555555667777776543322 111211111
Q ss_pred ------cCCeEEecC-CCcceeeecCCcEEEEEEecccCCCe-EEEEeC
Q psy5838 160 ------VPPSIIDKD-TSTDLVVREQANVTLNCKAQGYPEPY-VMWRRE 200 (215)
Q Consensus 160 ------~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~ 200 (215)
.++...+.. ....+....+..+++.|...+.+.+. +.|+++
T Consensus 324 ~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~ 372 (1205)
T KOG0613|consen 324 LQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHG 372 (1205)
T ss_pred hhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecc
Confidence 122222111 22344566788899999999887775 999994
No 408
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.68 E-value=7.9e+02 Score=26.42 Aligned_cols=99 Identities=9% Similarity=-0.024 Sum_probs=58.4
Q ss_pred EEccCCCceEEEEccCCeEEEE--EcccCCCCCeEEEEEee--c-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcE
Q psy5838 107 CQVNTNPRISLTYNDHRSWFLN--IKNVQESDRGWYMCQVN--T-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 107 C~~~~~~~~~~~~~~~~~~~l~--i~~~~~~d~G~Y~C~~~--~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~ 181 (215)
-.+.......|.|.-....... =...+..+.|.|+-.+. + .+.......+.|+.+..-.... .....+..|+.+
T Consensus 1807 a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~-as~~~~~~n~~v 1885 (2740)
T TIGR00864 1807 GELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK-ASKKIAAIGEKV 1885 (2740)
T ss_pred EEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe-cccccccCCCEE
Confidence 3444556677887332221111 11244567899987653 2 2334445557777666433222 223346789999
Q ss_pred EEEEEecccCCCeEEEEeCCCcccc
Q psy5838 182 TLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 182 ~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+|.+.....+...+.|-..++....
T Consensus 1886 ~fsa~l~~GS~Vtf~w~fGdgs~~~ 1910 (2740)
T TIGR00864 1886 EFQILLAAGSAVNFRLQIGGAAPEV 1910 (2740)
T ss_pred EEEEEecCCCceEEEEEeCCCCcee
Confidence 9999887666678899997766543
No 409
>PHA03282 envelope glycoprotein E; Provisional
Probab=27.39 E-value=1.3e+02 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=18.1
Q ss_pred eEEEEEcccCCCCCeEEEEEeec
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
+.+|.|.+++++|+|.|+-.+..
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred cceEEEeeccccCCceEEEEecC
Confidence 45588889999999999887743
No 410
>PHA03282 envelope glycoprotein E; Provisional
Probab=27.20 E-value=1.3e+02 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.5
Q ss_pred EEEEEcccCCCCCeEEEEEeec
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
..|++.++..+++|.|.|++..
T Consensus 333 VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred cceEecCCCcccCceEEEEEEE
Confidence 3699999999999999999854
No 411
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=25.05 E-value=2.3e+02 Score=20.06 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCeEEEEEcccCCCCCeEEEEEeecC
Q psy5838 122 HRSWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 122 ~~~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
....-|+|.+.+.+|+|.|.-++.-.
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEEC
Confidence 34455899999999999999888543
No 412
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=24.80 E-value=1.2e+02 Score=19.92 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=10.2
Q ss_pred eEEEeCCcEEEEEEeec
Q psy5838 27 VTVTVGRDALLACVVDN 43 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~ 43 (215)
+....|.++-|+-...+
T Consensus 35 i~~~LGs~vlLpLt~eg 51 (126)
T PF06214_consen 35 ILQQLGSSVLLPLTSEG 51 (126)
T ss_dssp EEEETTS-EEEESSSTS
T ss_pred HHHHhCcceeeecchhh
Confidence 44567888887755543
No 413
>PHA03286 envelope glycoprotein E; Provisional
Probab=24.06 E-value=1.1e+02 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC
Q psy5838 105 YMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP 148 (215)
Q Consensus 105 Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 148 (215)
|.-......+..+.|-....-.|++.++..+++|.|-|++...+
T Consensus 287 ~~~~ides~~~~la~l~~~i~nL~f~nA~~s~SGLYVfVl~yNG 330 (492)
T PHA03286 287 YDTSVDESVQGRLAFLESDIPSFRLANAQPTDAGLYVVVALYNG 330 (492)
T ss_pred cccccCccccccceeeccCCCceeecCCCcccCceEEEEEEECC
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.02 E-value=81 Score=26.37 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=15.7
Q ss_pred EEEEcccCCCCCeEEEEEeec
Q psy5838 126 FLNIKNVQESDRGWYMCQVNT 146 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~ 146 (215)
.|++.++..+++|.|.|++..
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 389999999999999999853
No 415
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=20.52 E-value=2.4e+02 Score=17.81 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.5
Q ss_pred cCCCCceEEEeCCcEEEEEEee
Q psy5838 21 AEPIPNVTVTVGRDALLACVVD 42 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~ 42 (215)
...|....+..|+++.+.|+..
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCSts 28 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTS 28 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEES
T ss_pred EEECCccEECCCCCEEEEEcCC
Confidence 3456788999999999999975
Done!