Query psy5838
Match_columns 215
No_of_seqs 119 out of 1200
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 19:20:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rik_A Titin; I-SET IG fold, p 99.9 3.8E-23 1.3E-27 157.6 21.2 175 16-210 4-238 (284)
2 1qz1_A Neural cell adhesion mo 99.9 6E-23 2.1E-27 156.9 16.5 177 17-208 2-240 (291)
3 3b43_A Titin; I-SET IG fold, e 99.9 3.5E-22 1.2E-26 166.6 18.9 176 16-211 196-431 (570)
4 2wim_A N-CAM 2, NCAM2, neural 99.9 2.3E-22 8E-27 153.6 15.5 176 16-209 3-239 (291)
5 3b43_A Titin; I-SET IG fold, e 99.9 1.6E-21 5.4E-26 162.7 20.4 175 16-210 4-243 (570)
6 2yd9_A Receptor-type tyrosine- 99.9 5.1E-21 1.8E-25 147.3 18.0 174 15-208 4-249 (304)
7 2y25_A Myomesin; structural pr 99.9 1.4E-20 4.8E-25 145.3 16.0 174 15-210 5-268 (317)
8 3laf_A Deleted in colorectal c 99.8 1.9E-20 6.4E-25 149.3 13.9 172 17-208 121-356 (403)
9 4fqp_A Poliovirus receptor; im 99.8 1.7E-20 5.9E-25 145.0 13.0 182 21-206 4-260 (313)
10 4fom_A Poliovirus receptor-rel 99.8 1.2E-20 4.2E-25 145.4 11.2 173 25-205 7-254 (308)
11 3qs7_E FL cytokine receptor; i 99.8 8.5E-20 2.9E-24 147.1 15.9 80 126-208 291-370 (423)
12 3rjd_A High affinity immunoglo 99.8 2.6E-19 8.8E-24 134.6 14.7 159 17-206 1-217 (262)
13 3kld_A Contactin 4, axcam, BIG 99.8 2.4E-19 8.2E-24 142.6 15.0 165 24-210 109-341 (384)
14 2v5m_A Dscam; neurobiology SPL 99.8 1.3E-19 4.4E-24 143.8 13.1 177 17-208 103-351 (388)
15 2wng_A Tyrosine-protein phosph 99.8 9.6E-20 3.3E-24 141.6 11.9 178 17-206 3-264 (327)
16 1wio_A CD4, T-cell surface gly 99.8 6.7E-20 2.3E-24 144.5 11.2 169 26-207 3-224 (363)
17 3kld_A Contactin 4, axcam, BIG 99.8 3.2E-19 1.1E-23 141.8 14.7 171 16-206 4-248 (384)
18 2ec8_A MAST/stem cell growth f 99.8 1.5E-18 5.1E-23 143.1 19.0 171 18-208 115-358 (524)
19 3p3y_A Neurofascin; IG domains 99.8 3.5E-19 1.2E-23 141.9 14.4 163 24-208 123-356 (404)
20 3u83_A Poliovirus receptor-rel 99.8 1.3E-19 4.3E-24 140.9 11.3 184 17-206 14-275 (331)
21 2o26_X MAST/stem cell growth f 99.8 1.5E-18 5.1E-23 132.6 17.0 159 15-204 10-229 (290)
22 3laf_A Deleted in colorectal c 99.8 1.7E-18 5.7E-23 137.9 15.6 175 14-207 18-264 (403)
23 4dep_C Interleukin-1 receptor 99.8 1.3E-18 4.4E-23 136.3 13.8 172 23-207 13-273 (349)
24 1cs6_A Axonin-1; neural cell a 99.8 1.9E-18 6.4E-23 136.9 14.6 166 24-209 108-339 (382)
25 1e07_A Carcinoembryonic antige 99.8 3.8E-18 1.3E-22 143.9 17.4 156 22-207 386-602 (642)
26 3qs9_E FL cytokine receptor; i 99.8 2.8E-18 9.7E-23 141.7 15.4 81 126-209 291-371 (527)
27 3ejj_X Macrophage colony-stimu 99.8 2.8E-18 9.6E-23 130.7 13.7 163 16-207 3-230 (289)
28 2y23_A Myomesin; structural pr 99.8 2.6E-17 9E-22 126.6 19.2 164 25-210 9-268 (312)
29 1e07_A Carcinoembryonic antige 99.8 4.3E-18 1.5E-22 143.5 16.1 175 20-207 2-246 (642)
30 1bih_A Hemolin; insect immunit 99.8 2.5E-18 8.7E-23 136.6 13.5 172 16-207 5-255 (395)
31 3o4o_C Interleukin-1 receptor 99.8 3.9E-19 1.3E-23 138.7 8.5 177 10-206 11-272 (339)
32 2ocw_A Polymeric-immunoglobuli 99.8 2.8E-17 9.7E-22 137.0 20.3 175 16-199 111-371 (585)
33 3qs9_E FL cytokine receptor; i 99.8 7E-18 2.4E-22 139.4 16.0 156 23-201 233-445 (527)
34 2j8h_A Titin, connectin; cardi 99.8 1.1E-17 3.7E-22 120.6 15.1 144 16-210 3-150 (197)
35 2ec8_A MAST/stem cell growth f 99.8 8.3E-18 2.8E-22 138.6 16.3 168 16-204 210-446 (524)
36 3vh8_G Killer cell immunoglobu 99.8 3.9E-18 1.3E-22 132.0 13.4 165 14-206 21-259 (316)
37 1itb_B Type 1 interleukin-1 re 99.8 1.2E-18 4E-23 134.6 10.3 168 22-208 10-253 (315)
38 1epf_A NCAM, protein (neural c 99.8 1.9E-17 6.4E-22 118.7 15.8 139 18-208 3-144 (191)
39 1qgc_4 Protein (immunoglobulin 99.8 1.4E-17 4.7E-22 134.2 16.2 172 19-200 3-257 (438)
40 1ry7_B FGFR-3, fibroblast grow 99.8 3.7E-19 1.3E-23 138.5 6.7 168 17-206 9-268 (334)
41 2rcj_C Light chain; immunoglob 99.8 3.8E-17 1.3E-21 134.7 19.0 172 23-205 6-262 (523)
42 3lcy_A Titin; A-BAND, IG tande 99.8 2.6E-17 9E-22 118.3 15.8 142 16-210 6-149 (197)
43 1cs6_A Axonin-1; neural cell a 99.8 4.1E-18 1.4E-22 134.9 12.6 169 16-205 3-248 (382)
44 2rcj_C Light chain; immunoglob 99.8 1.5E-17 5.1E-22 137.1 16.4 175 16-206 113-365 (523)
45 3oq3_B IFN-alpha/beta binding 99.8 9.8E-18 3.3E-22 130.5 13.8 157 25-205 37-273 (329)
46 3dmk_A DOWN syndrome cell adhe 99.8 1.1E-17 3.7E-22 144.7 14.9 162 18-210 344-572 (816)
47 2c5d_C AXL oncogene, tyrosine- 99.8 5.3E-17 1.8E-21 116.9 16.0 146 17-208 2-151 (195)
48 2a38_A Titin; Z1Z2, structural 99.8 3.2E-17 1.1E-21 117.7 14.7 142 16-210 4-149 (194)
49 2v44_A NCAM2, neural cell adhe 99.8 6.6E-17 2.3E-21 115.8 16.2 133 19-206 4-138 (189)
50 1rhf_A Tyrosine-protein kinase 99.8 9E-17 3.1E-21 114.3 16.8 137 17-206 2-141 (182)
51 2yd1_A Tyrosine-protein phosph 99.8 1E-16 3.5E-21 117.0 17.4 140 15-207 4-153 (212)
52 2v5m_A Dscam; neurobiology SPL 99.8 1.3E-17 4.6E-22 132.2 13.5 165 17-200 3-249 (388)
53 1wio_A CD4, T-cell surface gly 99.8 1.3E-17 4.6E-22 131.4 13.2 139 27-208 106-327 (363)
54 3dmk_A DOWN syndrome cell adhe 99.7 1.8E-17 6.1E-22 143.3 14.6 157 22-200 531-751 (816)
55 3p3y_A Neurofascin; IG domains 99.7 4.9E-18 1.7E-22 135.2 9.7 181 9-207 8-265 (404)
56 3mjg_X Beta-type platelet-deri 99.7 2.4E-17 8.3E-22 125.7 13.1 161 18-203 1-220 (289)
57 2oz4_A Intercellular adhesion 99.7 6.5E-17 2.2E-21 122.1 14.9 151 28-203 14-224 (265)
58 2v5t_A NCAM2, N-CAM 2, neural 99.7 2.5E-17 8.6E-22 117.7 11.8 139 17-209 2-143 (189)
59 4fa8_A Secreted protein BARF1; 99.7 1.8E-17 6E-22 120.7 11.0 78 124-203 68-146 (203)
60 2yd6_A PTPRD protein; hydrolas 99.7 2.2E-16 7.5E-21 115.3 16.8 138 15-207 4-151 (212)
61 2iep_A Muscle-specific kinase 99.7 4.1E-17 1.4E-21 117.0 12.7 138 16-209 6-145 (192)
62 2ocw_A Polymeric-immunoglobuli 99.7 2.2E-16 7.6E-21 131.6 18.8 169 22-202 5-258 (585)
63 1bih_A Hemolin; insect immunit 99.7 1.6E-17 5.3E-22 132.0 10.8 165 25-206 108-351 (395)
64 4dkd_C Macrophage colony-stimu 99.7 1.3E-17 4.4E-22 127.3 9.8 162 16-206 3-229 (292)
65 1za6_B IGG heavy chain; immuno 99.7 1.5E-16 5E-21 124.6 14.5 172 24-206 7-286 (344)
66 1qgc_4 Protein (immunoglobulin 99.7 5.3E-17 1.8E-21 130.8 11.0 160 30-206 129-387 (438)
67 2nzi_A Titin; IG-domain, FNIII 99.7 2.8E-16 9.6E-21 120.6 14.5 144 16-210 3-150 (305)
68 1z7z_I Intercellular adhesion 99.7 8.8E-17 3E-21 130.0 12.0 157 27-204 198-410 (450)
69 4f80_A Butyrophilin subfamily 99.7 9.8E-16 3.3E-20 112.9 16.5 145 22-206 9-162 (226)
70 2jll_A NCAM2, neural cell adhe 99.7 7.9E-16 2.7E-20 122.0 16.0 141 18-208 2-144 (389)
71 3nl4_L Antigen binding fragmen 99.7 8E-16 2.7E-20 112.2 14.8 143 18-206 2-157 (213)
72 1f97_A Junction adhesion molec 99.7 1.1E-15 3.7E-20 111.0 14.5 140 18-207 2-149 (212)
73 3sbw_C Programmed cell death 1 99.7 6.7E-16 2.3E-20 113.2 13.3 147 20-206 4-159 (222)
74 3mj8_L Stimulatory hamster ant 99.7 2.5E-15 8.5E-20 109.5 15.8 143 18-207 2-159 (213)
75 3rbs_A Myomesin-1; immunoglobu 99.7 1.3E-15 4.6E-20 111.0 14.1 135 17-208 3-161 (207)
76 2wv3_A Neuroplastin; igcam, me 99.7 6.7E-16 2.3E-20 110.7 12.2 129 17-205 3-135 (190)
77 1igt_B IGG2A intact antibody - 99.7 2.3E-15 7.8E-20 121.7 16.7 174 24-206 7-286 (444)
78 3k0w_A Mucosa-associated lymph 99.7 2.2E-15 7.6E-20 110.5 14.9 131 15-209 16-163 (218)
79 3bp6_B Programmed cell death 1 99.7 8.1E-16 2.8E-20 111.3 12.1 136 20-204 5-143 (202)
80 3s96_B 3B5H10 FAB light chain; 99.7 3.4E-15 1.2E-19 109.2 14.7 143 18-207 2-166 (218)
81 1nbq_A JAM, junctional adhesio 99.7 1.1E-15 3.6E-20 110.9 11.7 141 17-207 4-151 (209)
82 1hzh_H IGG, immunoglobulin hea 99.7 1.3E-15 4.4E-20 123.6 13.3 174 24-206 7-295 (457)
83 2va4_A NCAM2, N-CAM 2, neural 99.7 1.3E-15 4.6E-20 108.9 11.7 127 17-200 2-131 (192)
84 1fnl_A Low affinity immunoglob 99.6 3.6E-15 1.2E-19 105.6 13.2 127 14-206 4-131 (175)
85 3r06_A Anti-mouse CD3epsilon a 99.6 3.3E-15 1.1E-19 108.9 13.0 144 18-207 2-157 (213)
86 3pl6_D MBP peptide / T-cell re 99.6 9.7E-15 3.3E-19 110.3 15.8 146 16-206 25-190 (268)
87 2d3v_A Leukocyte immunoglobuli 99.6 2.7E-15 9.4E-20 108.2 12.1 130 16-205 4-139 (196)
88 3sgj_C Human FCG3A receptor; r 99.6 2.5E-15 8.7E-20 109.3 11.8 125 16-206 6-131 (204)
89 4dzb_B Vbeta2 (MAIT T cell rec 99.6 5.8E-15 2E-19 110.1 14.0 145 19-207 3-170 (246)
90 2ny1_B T-cell surface glycopro 99.6 4.6E-15 1.6E-19 105.8 12.2 131 25-162 3-181 (184)
91 3tv3_L PGT128 light chain, IG 99.6 1.3E-14 4.3E-19 105.7 14.1 140 18-206 2-155 (211)
92 1igy_B IGG1 intact antibody MA 99.6 1.9E-15 6.3E-20 121.9 10.4 173 24-205 6-275 (434)
93 3v2a_R Vascular endothelial gr 99.6 1.3E-15 4.6E-20 130.6 10.0 164 24-207 133-373 (772)
94 3sob_L Antibody light chain; b 99.6 8.2E-15 2.8E-19 108.4 13.0 144 17-206 24-179 (237)
95 1vca_A VCAM-D1,2, human vascul 99.6 6E-15 2E-19 107.1 12.0 123 26-206 10-136 (202)
96 3ojm_B Fibroblast growth facto 99.6 2.8E-15 9.7E-20 110.2 10.5 133 16-199 14-154 (231)
97 1f2q_A High affinity immunoglo 99.6 2.6E-15 8.9E-20 106.4 9.8 125 16-207 3-129 (176)
98 3jz7_A MCAR, CAR, coxsackievir 99.6 2.5E-15 8.7E-20 109.1 10.0 74 125-200 84-159 (214)
99 1z7z_I Intercellular adhesion 99.6 5E-15 1.7E-19 119.7 12.6 157 20-206 2-233 (450)
100 3d9a_L Light chain of hyhel10 99.6 1.8E-14 6.2E-19 104.9 14.4 142 20-207 4-157 (213)
101 3mj6_A Junctional adhesion mol 99.6 1.9E-15 6.5E-20 113.9 9.4 155 18-181 6-257 (268)
102 3nfj_J T cell receptor beta ch 99.6 1.2E-14 4.2E-19 108.3 13.6 144 20-207 4-169 (245)
103 2v9r_A Roundabout homolog 1; p 99.6 1.5E-15 5E-20 110.4 8.4 146 14-207 6-155 (212)
104 2wbj_D OB TCR; transmembrane, 99.6 9.8E-15 3.4E-19 111.1 13.3 147 16-206 23-194 (279)
105 2fbo_J V1V2;, variable region- 99.6 2.9E-15 1E-19 111.6 9.9 79 126-206 91-178 (250)
106 1lk3_L 9D7 light chain; antige 99.6 2.9E-14 1E-18 103.7 15.0 141 20-207 4-156 (210)
107 4ei6_B Vbeta16 XV19 type II na 99.6 1.5E-14 5E-19 107.8 13.7 145 18-207 3-169 (245)
108 3knb_B Obscurin-like protein 1 99.6 3.4E-15 1.2E-19 97.4 8.9 100 11-162 7-107 (107)
109 2vr9_A Roundabout 1, ROBO; imm 99.6 1.9E-15 6.7E-20 110.4 8.6 142 14-206 6-151 (217)
110 3esu_F Antibody 14B7* light ch 99.6 1.2E-14 4.1E-19 108.6 12.9 141 17-200 4-170 (250)
111 1c1e_H Catalytic antibody 1E9 99.6 1.8E-14 6.1E-19 105.5 13.5 137 24-205 7-167 (219)
112 2r15_A Myomesin-1; sarcomeric 99.6 1.4E-14 4.6E-19 105.3 12.4 127 30-210 15-163 (212)
113 1iga_A IGA1; immunoglobulin; N 99.6 1.2E-13 4.2E-18 112.6 19.3 169 21-197 5-284 (475)
114 2pet_A Lutheran blood group gl 99.6 6.1E-15 2.1E-19 108.6 10.4 151 22-209 5-165 (231)
115 3q5y_A TCR N15 beta; IG, T cel 99.6 3.8E-14 1.3E-18 105.3 14.8 145 18-207 3-167 (240)
116 2wqr_A IG epsilon chain C regi 99.6 3.6E-15 1.2E-19 115.7 9.5 157 33-207 25-264 (323)
117 3qib_D 2B4 beta chain; IG doma 99.6 2.1E-14 7E-19 108.7 13.3 147 16-207 26-194 (270)
118 3r4d_A CEA-related cell adhesi 99.6 1.3E-14 4.5E-19 105.2 11.5 78 126-209 72-154 (208)
119 3grw_A Fibroblast growth facto 99.6 8.4E-15 2.9E-19 108.6 10.7 140 16-207 10-161 (241)
120 1q0x_L FAB 9B1, light chain; a 99.6 2.1E-14 7.2E-19 104.6 12.6 140 20-206 4-159 (212)
121 1hxm_B Gamma-delta T-cell rece 99.6 6.2E-14 2.1E-18 104.5 15.0 145 18-205 2-176 (242)
122 2if7_A SLAM family member 6; N 99.6 1.3E-14 4.4E-19 104.6 10.9 135 23-206 4-152 (193)
123 4frw_A Poliovirus receptor-rel 99.6 8.5E-15 2.9E-19 106.4 10.1 154 23-206 5-160 (218)
124 1bec_A 14.3.D T cell antigen r 99.6 6.2E-14 2.1E-18 104.2 14.9 141 21-206 3-165 (238)
125 1hng_A CD2; T lymphocyte adhes 99.6 1.2E-14 4.3E-19 103.2 10.6 75 127-209 63-140 (176)
126 4fmk_A Poliovirus receptor-rel 99.6 1.3E-14 4.4E-19 105.9 10.9 120 24-147 8-203 (225)
127 4i0k_A CD276 antigen; immunogl 99.6 2.1E-15 7.3E-20 110.5 6.3 142 25-206 3-154 (222)
128 1oll_A NK receptor; immune sys 99.6 3.6E-14 1.2E-18 101.7 12.5 131 16-206 3-139 (188)
129 3juy_B 3B3 single chain varian 99.6 9.1E-14 3.1E-18 104.3 15.2 155 15-200 4-187 (256)
130 3p2t_A Leukocyte immunoglobuli 99.6 2.2E-14 7.5E-19 103.4 11.3 130 16-205 4-139 (196)
131 1uct_A Immunoglobulin alpha FC 99.6 2.6E-14 8.9E-19 105.0 11.8 135 15-206 7-147 (218)
132 1ugn_A LIR1, leukocyte immunog 99.6 1.1E-14 3.9E-19 105.0 9.7 130 16-205 4-140 (198)
133 2gi7_A GPVI protein; IG-like d 99.6 4.3E-14 1.5E-18 100.9 12.6 123 15-206 6-134 (184)
134 2c1o_A IGK-C protein; FAB frag 99.6 3.7E-14 1.3E-18 106.2 12.8 145 17-207 38-199 (254)
135 3ry4_A Low affinity immunoglob 99.6 1.9E-14 6.6E-19 101.1 10.6 124 16-206 3-128 (170)
136 1nkr_A P58-CL42 KIR; inhibitor 99.6 6.1E-14 2.1E-18 101.5 13.3 133 16-206 7-148 (201)
137 1q9r_B S25-2 FAB (IGG1K) heavy 99.6 7.8E-14 2.7E-18 102.4 13.3 137 24-205 7-170 (222)
138 3s97_C Contactin-1; carbonic a 99.6 2.3E-14 7.7E-19 103.1 10.2 135 17-206 7-155 (201)
139 3v2a_R Vascular endothelial gr 99.6 4.4E-15 1.5E-19 127.4 7.5 167 24-200 231-461 (772)
140 1dee_B IGM RF 2A2; FAB-IBP com 99.6 1.2E-13 4.3E-18 101.6 14.3 138 25-206 8-171 (223)
141 1gsm_A Madcam-1, mucosal addre 99.6 1.6E-13 5.3E-18 99.8 14.2 118 26-206 16-141 (210)
142 3bkj_L WO2 IGG2A FAB fragment 99.6 4.8E-14 1.6E-18 105.6 11.9 144 17-206 34-194 (252)
143 3b5h_A Cervical EMMPRIN, HAB18 99.6 1.4E-13 4.7E-18 97.9 13.6 111 26-199 7-120 (184)
144 2xzc_L FAB A.17 light chain; i 99.6 1.6E-13 5.5E-18 100.2 14.3 141 20-207 4-159 (216)
145 1ypz_F T-cell receptor gamma c 99.6 9.7E-14 3.3E-18 102.7 13.2 145 20-206 4-175 (230)
146 3uzq_A Anti-dengue MAB 4E11; d 99.5 2.2E-13 7.5E-18 102.0 15.3 137 20-200 4-174 (253)
147 1nfd_E H57 FAB; complex (immun 99.5 3.8E-14 1.3E-18 103.2 10.8 141 20-207 3-158 (212)
148 3umt_A SCFV heavy chain and li 99.5 3.1E-13 1.1E-17 101.4 16.1 137 25-200 10-175 (256)
149 1ccz_A Protein (CD58); LFA-3, 99.5 4.2E-14 1.4E-18 100.0 10.7 125 26-206 4-132 (171)
150 1moe_A Anti-CEA MAB T84.66; an 99.5 1.4E-13 5E-18 102.0 14.0 138 19-200 3-158 (240)
151 3d9a_H Heavy chain of hyhel10 99.5 8E-14 2.7E-18 101.4 12.4 137 24-204 7-160 (210)
152 1nqb_A Single-chain antibody f 99.5 2.7E-13 9.4E-18 101.8 15.6 133 24-200 7-163 (256)
153 2p1y_A Bispecific alpha/beta T 99.5 1.7E-13 5.9E-18 101.4 14.3 136 20-200 3-164 (238)
154 2znx_A SCFV; fluorotryptohpan, 99.5 1.5E-13 5E-18 102.4 13.8 138 19-200 3-161 (242)
155 1op3_H FAB 2G12, heavy chain; 99.5 2.4E-13 8.2E-18 100.1 14.8 136 24-204 7-170 (225)
156 3auv_A SC-DSFV derived from th 99.5 5.8E-14 2E-18 106.6 11.6 141 16-200 11-173 (276)
157 1pz5_B Heavy chain of FAB (SYA 99.5 1.1E-13 3.6E-18 101.5 12.6 135 24-203 7-166 (220)
158 2zg1_A Sialic acid-binding IG- 99.5 6.4E-14 2.2E-18 102.0 11.2 139 22-204 5-167 (214)
159 1mju_H Immunoglobulin MS6-12; 99.5 1.9E-13 6.3E-18 100.9 13.7 137 24-205 7-164 (227)
160 2ghw_B Anti-SARS SCFV antibody 99.5 1.7E-13 5.8E-18 102.1 13.5 135 25-200 10-172 (247)
161 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.5 7.6E-13 2.6E-17 99.3 17.0 142 18-200 4-173 (256)
162 2gjj_A A21 single-chain antibo 99.5 4.5E-13 1.6E-17 101.1 15.7 144 15-200 3-177 (264)
163 3omz_A Human vdelta1 gamma del 99.5 1.8E-13 6.2E-18 102.8 13.4 140 17-200 2-174 (259)
164 1svz_A Immunoglobulin;, single 99.5 2.7E-13 9.3E-18 101.1 14.2 138 19-200 3-166 (247)
165 2rik_A Titin; I-SET IG fold, p 99.5 3E-13 1E-17 102.6 14.6 125 17-158 98-282 (284)
166 2dru_A Chimera of CD48 antigen 99.5 7.4E-14 2.5E-18 99.5 10.4 129 24-206 6-142 (180)
167 2x1w_L Vascular endothelial gr 99.5 1.1E-13 3.8E-18 101.0 11.5 124 24-204 14-147 (213)
168 1iga_A IGA1; immunoglobulin; N 99.5 4.1E-13 1.4E-17 109.5 15.9 80 126-207 310-395 (475)
169 1igt_B IGG2A intact antibody - 99.5 6.8E-14 2.3E-18 113.0 10.7 79 125-206 305-390 (444)
170 3nl4_H Antigen binding fragmen 99.5 1.7E-13 6E-18 100.0 11.8 135 24-204 6-162 (215)
171 1oga_E TRBC1, T-cell receptor 99.5 2.7E-13 9.3E-18 101.6 13.0 144 18-206 4-167 (252)
172 3to4_D NKT vbeta2 (mouse varia 99.5 1.6E-13 5.5E-18 102.8 11.6 141 21-207 5-169 (253)
173 1c5d_H Monoclonal antibody aga 99.5 3E-13 1E-17 98.9 12.8 138 24-205 7-165 (215)
174 2yuz_A Myosin-binding protein 99.5 2.8E-13 9.7E-18 87.1 11.2 94 14-162 4-97 (100)
175 2fbj_H IGA-kappa J539 FAB (hea 99.5 5E-13 1.7E-17 98.1 14.0 135 25-205 8-166 (220)
176 1f3r_B FV antibody fragment; I 99.5 3.8E-13 1.3E-17 101.0 13.5 134 25-200 8-176 (257)
177 3gkz_A Anti-methamphetamine si 99.5 3.1E-13 1.1E-17 101.4 13.1 137 23-200 14-179 (257)
178 1zvo_C Myeloma immunoglobulin 99.5 1.8E-12 6.1E-17 106.8 18.6 83 24-110 7-100 (512)
179 1qok_A MFE-23 recombinant anti 99.5 7E-13 2.4E-17 101.0 15.1 135 21-200 30-198 (282)
180 2ifg_A High affinity nerve gro 99.5 1.8E-14 6.2E-19 112.9 6.3 131 16-207 157-289 (347)
181 1dr9_A B7-1 (CD80), T lymphocy 99.5 1.9E-13 6.4E-18 98.7 10.9 74 126-206 66-149 (201)
182 3knb_A Titin; IG-like, titin, 99.5 5.4E-14 1.9E-18 90.5 7.1 43 15-65 3-45 (100)
183 3bqu_C 3H6 FAB light chain; be 99.5 4E-14 1.4E-18 104.6 7.3 144 17-206 23-178 (233)
184 3m8o_H Immunoglobulin A1 heavy 99.5 9.3E-13 3.2E-17 96.6 14.5 77 125-205 81-167 (221)
185 1b6u_A KIR2DL3, P58 killer cel 99.5 1.1E-12 3.6E-17 98.8 15.1 133 16-206 6-147 (257)
186 2xqy_G A13-D6.3 monoclonal ant 99.5 5.7E-13 1.9E-17 100.5 13.5 137 24-205 13-172 (261)
187 3pv7_A B7-H6, IG-like domain-c 99.5 8.2E-14 2.8E-18 103.9 8.8 75 125-203 82-159 (248)
188 3bae_H WO2 IGG2A FAB fragment 99.5 2.3E-13 8E-18 100.4 10.9 136 24-204 7-172 (228)
189 1x9q_A SCFV, 4M5.3 anti-fluore 99.5 4.6E-13 1.6E-17 101.2 12.6 45 11-62 9-58 (268)
190 2wim_A N-CAM 2, NCAM2, neural 99.5 1.7E-13 5.7E-18 104.3 10.2 129 16-162 97-286 (291)
191 1waa_A Titin; metal binding pr 99.5 2.5E-13 8.5E-18 86.2 9.3 79 15-111 3-81 (93)
192 1p6f_A NKP46, natural cytotoxi 99.5 7.1E-13 2.4E-17 98.9 13.2 132 15-206 5-142 (242)
193 3ux9_B SCFV antibody; five hel 99.5 1.2E-12 4E-17 98.1 14.5 29 172-200 143-173 (256)
194 2j6e_L IGM, FAB light chain; a 99.5 1.3E-13 4.5E-18 101.8 9.1 143 17-206 20-179 (234)
195 2cqv_A MLCK, myosin light chai 99.5 1.6E-12 5.6E-17 85.4 13.4 99 14-164 4-103 (114)
196 3m45_A Cell adhesion molecule 99.5 9E-13 3.1E-17 85.5 11.8 103 17-162 6-108 (108)
197 1qz1_A Neural cell adhesion mo 99.5 2E-13 6.8E-18 103.9 9.8 126 16-159 99-289 (291)
198 1dn0_B IGM-kappa cold agglutin 99.5 1.7E-12 5.9E-17 96.0 14.4 137 25-205 8-170 (232)
199 2eo9_A Roundabout homolog 1; b 99.4 5E-13 1.7E-17 88.5 9.1 112 13-178 4-116 (118)
200 3rbg_A Cytotoxic and regulator 99.4 8.9E-13 3E-17 88.1 10.1 116 20-178 4-119 (124)
201 3liz_H 4C3 monoclonal antibody 99.4 1.4E-12 4.7E-17 97.8 12.2 136 24-203 7-165 (253)
202 2o26_X MAST/stem cell growth f 99.4 1.2E-12 4E-17 99.7 11.7 126 18-162 92-290 (290)
203 3bn9_D E2 FAB heavy chain; ant 99.4 1.1E-12 3.9E-17 98.6 11.2 136 24-204 7-175 (257)
204 2rgs_A I, IG gamma-2B heavy ch 99.4 2.8E-13 9.5E-18 99.4 7.6 78 126-206 77-161 (218)
205 1g1c_A Immunoglobulin-like dom 99.4 6.1E-13 2.1E-17 85.1 8.2 40 16-62 4-43 (99)
206 1ypz_E T cell receptor delta, 99.4 9.6E-12 3.3E-16 90.5 15.5 35 20-62 4-38 (207)
207 1ry7_B FGFR-3, fibroblast grow 99.4 5.1E-13 1.7E-17 103.7 9.0 121 26-162 132-329 (334)
208 1hzh_H IGG, immunoglobulin hea 99.4 1.2E-12 4.2E-17 106.0 11.5 67 137-206 326-399 (457)
209 2kkq_A Myotilin; unknown funct 99.4 1.9E-12 6.6E-17 85.4 10.2 101 13-163 11-112 (116)
210 3eow_R Poliovirus receptor; im 99.4 5E-13 1.7E-17 97.9 8.1 72 125-199 78-153 (221)
211 2y23_A Myomesin; structural pr 99.4 2.7E-12 9.3E-17 98.4 12.5 125 17-157 106-309 (312)
212 2lvc_A Obscurin-like protein 1 99.4 1.2E-12 4.3E-17 82.5 8.6 77 17-111 4-82 (91)
213 2gki_A Nuclease; anti-DNA anti 99.4 5.8E-12 2E-16 96.4 13.9 31 170-200 166-202 (291)
214 3ejj_X Macrophage colony-stimu 99.4 2.7E-12 9.1E-17 97.5 11.9 122 20-159 92-280 (289)
215 3fku_X Neutralizing antibody F 99.4 4.9E-12 1.7E-16 96.2 12.9 36 19-62 3-40 (280)
216 2dav_A SLOW MYBP-C, myosin-bin 99.4 7.5E-12 2.6E-16 83.4 12.1 106 14-162 4-114 (126)
217 1igy_B IGG1 intact antibody MA 99.4 5.7E-14 2E-18 113.2 2.1 78 126-206 296-380 (434)
218 2vol_A Murine IGG FC; FC, zinc 99.4 3.3E-13 1.1E-17 98.1 5.8 78 126-206 69-153 (207)
219 3irg_B Obscurin-like protein 1 99.4 1.9E-12 6.7E-17 83.9 8.9 43 12-61 8-50 (107)
220 1hnf_A CD2; T lymphocyte adhes 99.4 3.9E-12 1.3E-16 90.7 11.0 72 126-205 67-141 (182)
221 2edj_A Roundabout homolog 2; K 99.4 3.1E-12 1.1E-16 82.0 9.5 96 12-161 3-99 (100)
222 3mtr_A N-CAM-1, NCAM-1, neural 99.4 4.7E-12 1.6E-16 92.3 11.6 82 14-111 16-97 (215)
223 3o3u_N Maltose-binding peripla 99.4 1E-12 3.6E-17 109.5 8.9 136 24-208 373-517 (581)
224 4dkd_C Macrophage colony-stimu 99.4 1.6E-12 5.6E-17 98.8 9.2 122 21-161 93-282 (292)
225 2e7c_A Myosin-binding protein 99.4 1.5E-11 5E-16 81.3 12.6 100 10-162 14-117 (118)
226 2dm2_A Palladin; beta-sandwich 99.4 2.4E-12 8.2E-17 84.0 8.6 99 14-162 5-104 (110)
227 2kdg_A Myotilin; immonoglobuli 99.4 2.1E-12 7.3E-17 82.7 8.2 42 16-65 4-45 (100)
228 3qp3_A Titin; I-SET IG-like, s 99.4 2.6E-12 8.8E-17 82.8 8.5 41 15-62 6-46 (103)
229 3cx2_A Myosin-binding protein 99.4 4.1E-12 1.4E-16 82.7 9.6 41 15-62 2-45 (108)
230 3puc_A Titin; I-SET IG-like do 99.4 3E-12 1E-16 81.8 8.6 78 15-109 4-81 (99)
231 1jbj_A CD3 epsilon and gamma e 99.4 3.3E-12 1.1E-16 91.3 9.4 28 175-206 119-146 (186)
232 2eny_A Obscurin; beta-sandwich 99.4 1.7E-12 5.8E-17 84.0 7.1 93 15-162 6-99 (104)
233 2lu7_A Obscurin-like protein 1 99.4 2.3E-12 7.8E-17 80.0 7.4 68 24-109 3-70 (84)
234 4fqp_A Poliovirus receptor; im 99.4 8.8E-12 3E-16 96.0 12.1 132 17-162 117-306 (313)
235 1u2h_A APEG-1, aortic preferen 99.4 3.7E-12 1.3E-16 81.3 8.4 40 16-62 4-43 (99)
236 2y25_A Myomesin; structural pr 99.4 1.8E-11 6.1E-16 94.1 13.7 117 28-161 109-316 (317)
237 3qhz_H Human monoclonal antibo 99.4 7.8E-12 2.7E-16 92.4 11.1 76 125-203 83-173 (232)
238 3vh8_G Killer cell immunoglobu 99.3 7.1E-12 2.4E-16 96.7 11.1 76 17-110 119-194 (316)
239 1x44_A Myosin-binding protein 99.3 1.5E-11 5.2E-16 79.2 10.6 91 16-162 6-98 (103)
240 2edf_A Obscurin; beta-sandwich 99.3 9.5E-12 3.2E-16 80.1 9.5 93 14-162 5-97 (103)
241 1nct_A Titin; cell adhesion, g 99.3 1.6E-12 5.3E-17 84.5 5.6 45 11-62 8-52 (106)
242 1i1c_A IGG2A, IG gamma-2A chai 99.3 1.7E-12 5.7E-17 96.7 6.4 78 126-206 83-167 (239)
243 1wit_A Twitchin 18TH IGSF modu 99.3 4.7E-12 1.6E-16 80.0 7.6 39 17-62 2-40 (93)
244 1z9m_A GAPA225; nectin-like, I 99.3 2.8E-11 9.7E-16 82.9 12.0 103 19-164 40-142 (145)
245 2k1m_A Myosin-binding protein 99.3 9.5E-12 3.3E-16 79.0 9.0 75 17-109 8-82 (95)
246 3u2s_H PG9 heavy chain; greek 99.3 1.7E-11 5.8E-16 91.7 11.8 156 23-203 5-182 (248)
247 2dm3_A KIAA0992 protein, palla 99.3 2.1E-12 7.1E-17 84.2 5.8 99 13-162 5-104 (110)
248 2dlt_A Myosin binding protein 99.3 4.6E-12 1.6E-16 82.1 7.3 41 14-62 5-45 (106)
249 3tv3_H PGT128 heavy chain, IG 99.3 1.6E-11 5.3E-16 91.3 11.1 35 24-62 7-42 (239)
250 2w59_A IGY FCU3-4; immunoglobu 99.3 4.1E-12 1.4E-16 94.0 7.8 140 17-207 12-163 (231)
251 2yuv_A Myosin-binding protein 99.3 3.2E-11 1.1E-15 77.3 11.0 91 16-162 6-97 (100)
252 1sy6_A T-cell surface glycopro 99.3 1.6E-11 5.5E-16 89.1 10.7 28 177-207 127-154 (204)
253 3irg_A Titin; IG-like, titin, 99.3 8.4E-12 2.9E-16 79.7 8.1 40 15-61 3-42 (100)
254 3n9g_H FAB fragment of MAB CR4 99.3 8.4E-11 2.9E-15 86.7 14.6 33 25-62 8-40 (230)
255 2edk_A Myosin-binding protein 99.3 3.8E-12 1.3E-16 81.8 6.4 78 15-110 6-87 (101)
256 1fhg_A Telokin; immunoglobulin 99.3 9.8E-12 3.3E-16 86.2 8.9 101 15-166 39-140 (154)
257 2e7b_A Obscurin; IG-like domai 99.3 6.1E-11 2.1E-15 76.3 11.3 94 14-163 5-98 (103)
258 1pd6_A Cardiac MYBP-C;, myosin 99.3 2.1E-11 7.1E-16 78.8 9.0 79 13-109 11-91 (104)
259 2bk8_A Connectin, M1, titin he 99.3 2.6E-11 9E-16 77.1 9.4 74 20-110 4-78 (97)
260 3kvq_A Vascular endothelial gr 99.3 1.9E-11 6.3E-16 79.3 8.5 42 14-62 7-48 (108)
261 2yd9_A Receptor-type tyrosine- 99.3 1.1E-10 3.7E-15 89.4 14.0 106 99-207 20-151 (304)
262 2e6p_A Obscurin-like protein 1 99.3 2E-11 6.9E-16 78.7 8.2 92 15-162 5-99 (104)
263 2ckn_A Basic fibroblast growth 99.3 9.4E-12 3.2E-16 79.0 6.4 43 14-65 6-48 (95)
264 2edn_A Myosin-binding protein 99.3 9.6E-12 3.3E-16 81.9 6.5 40 15-61 10-52 (118)
265 2edh_A Obscurin; structural ge 99.3 8E-11 2.7E-15 77.1 10.9 89 17-162 19-107 (113)
266 4fom_A Poliovirus receptor-rel 99.3 1.2E-11 4.2E-16 94.8 8.0 125 23-163 120-303 (308)
267 1l6x_A Immunoglobulin gamma-1 99.3 8.1E-12 2.8E-16 90.7 6.4 75 129-206 72-153 (207)
268 1hxm_A Gamma-delta T-cell rece 99.3 2.6E-10 9E-15 84.2 14.6 38 20-62 4-41 (229)
269 2dku_A KIAA1556 protein; beta- 99.3 1.9E-10 6.5E-15 73.9 12.2 92 15-162 6-97 (103)
270 2xot_A Amphoterin-induced prot 99.3 2.5E-11 8.5E-16 95.7 9.6 108 23-196 252-360 (361)
271 1itb_B Type 1 interleukin-1 re 99.3 4.3E-11 1.5E-15 92.0 10.6 64 27-110 113-182 (315)
272 2e6q_A Obscurin-like protein 1 99.2 2.7E-11 9.1E-16 79.2 7.8 45 12-66 3-47 (112)
273 2dm7_A KIAA1556 protein; beta- 99.2 3.5E-11 1.2E-15 78.1 8.1 92 14-162 5-96 (108)
274 1jhl_L IGG1-kappa D11.15 FV (l 99.2 3.1E-11 1.1E-15 78.5 7.8 84 20-111 4-92 (108)
275 2q20_A VK1 O18/O8 germline lig 99.2 3.5E-11 1.2E-15 78.4 7.6 86 18-111 4-94 (109)
276 2cr6_A KIAA1556 protein, obscu 99.2 1.1E-11 3.8E-16 81.6 4.8 96 17-166 13-108 (115)
277 2aty_A Complement receptor chi 99.2 8.9E-11 3E-15 93.0 10.9 77 126-205 234-317 (376)
278 3qr2_A Basigin; CD147, EMMPRIN 99.2 5.3E-11 1.8E-15 80.7 8.3 46 11-63 15-60 (137)
279 3qs7_E FL cytokine receptor; i 99.2 8.8E-11 3E-15 94.5 11.0 104 97-204 60-179 (423)
280 1gxe_A Myosin binding protein 99.2 3.6E-11 1.2E-15 81.8 7.3 40 16-62 14-56 (139)
281 1h5b_A Murine T cell receptor 99.2 1.3E-10 4.4E-15 76.2 9.8 82 20-110 4-91 (113)
282 2yr3_A Myosin light chain kina 99.2 3.1E-11 1.1E-15 77.0 6.5 42 14-62 8-49 (99)
283 2cpc_A KIAA0657 protein; immun 99.2 3.1E-10 1.1E-14 74.1 11.4 83 27-165 23-105 (113)
284 2e27_L Anti-ciguatoxin antibod 99.2 1.6E-10 5.3E-15 76.6 10.0 86 18-111 4-94 (119)
285 3iu4_H CHP3 FAB heavy chain; a 99.2 2.2E-10 7.6E-15 86.3 12.0 33 25-62 8-40 (263)
286 1i8k_A Epidermal growth factor 99.2 2.2E-10 7.5E-15 74.3 10.3 85 20-112 4-93 (107)
287 3f8u_B Tapasin; endoplasmic re 99.2 4.2E-10 1.4E-14 88.8 13.7 75 124-199 253-333 (401)
288 3mlr_H Human monoclonal anti-H 99.2 3.3E-10 1.1E-14 83.3 12.4 33 25-62 8-40 (226)
289 3c6l_A TCR 2W20 alpha chain; T 98.8 1.9E-12 6.5E-17 92.4 0.0 36 20-62 3-38 (185)
290 3sob_H Antibody heavy chain, l 99.2 5.7E-10 1.9E-14 83.6 13.5 33 25-62 31-63 (256)
291 3oq3_B IFN-alpha/beta binding 99.2 6.2E-11 2.1E-15 92.0 8.4 62 29-110 140-202 (329)
292 1i3g_L Antibody FV fragment; a 99.2 1.2E-10 4.3E-15 76.0 8.5 87 18-112 5-96 (111)
293 3rgv_A YAE62 TCR A chain; TCR, 99.2 3E-10 1E-14 81.8 11.0 35 20-61 3-37 (200)
294 3caf_A Fibroblast growth facto 99.2 1.1E-11 3.7E-16 79.3 3.1 39 17-62 4-46 (100)
295 1mqk_L Antibody 7E2 FV fragmen 99.2 3.2E-10 1.1E-14 75.2 10.1 36 20-62 4-39 (120)
296 2bnu_A TCR alpha chain, T-cell 99.2 5.6E-10 1.9E-14 80.9 12.3 35 21-62 4-38 (203)
297 3bfo_A Mucosa-associated lymph 99.2 1.1E-10 3.8E-15 73.3 7.4 38 17-61 3-40 (91)
298 1mq8_A ICAM-1, intercellular a 99.2 1E-10 3.4E-15 89.4 8.5 78 126-206 143-233 (291)
299 1qfw_M FV, antibody (anti beta 99.2 5.1E-11 1.7E-15 77.5 5.8 36 20-62 4-39 (108)
300 3mbe_C I-AG7; T cell receptor, 99.2 7.9E-10 2.7E-14 81.2 12.6 35 20-62 4-38 (229)
301 4ffy_L DENV1-E111 single chain 99.1 1.2E-10 4.1E-15 77.9 7.5 86 18-111 2-96 (126)
302 2yz1_A Tyrosine-protein phosph 99.1 1.2E-10 4E-15 77.2 7.4 40 17-63 7-47 (120)
303 1ow0_A IG alpha-1 chain C regi 99.1 5.9E-12 2E-16 92.0 1.1 79 127-207 68-152 (214)
304 2wng_A Tyrosine-protein phosph 99.1 1.1E-10 3.9E-15 90.3 8.1 81 125-207 74-162 (327)
305 1pko_A Myelin oligodendrocyte 99.1 7.7E-10 2.6E-14 75.1 11.3 41 19-63 8-48 (139)
306 2yc1_B Single chain antibody f 99.1 4.1E-10 1.4E-14 77.2 9.9 40 16-62 15-54 (146)
307 4gos_A V-SET domain-containing 99.1 1.1E-10 3.7E-15 78.0 6.8 42 18-63 6-47 (125)
308 4ei6_A Valpha1 XV19 type II na 99.1 3.7E-10 1.3E-14 81.8 9.8 81 20-107 5-90 (208)
309 2jju_A Signal regulatory prote 99.1 2.5E-10 8.4E-15 76.5 8.3 38 19-63 5-43 (127)
310 1tvd_A T cell receptor, ES204 99.1 6.6E-10 2.3E-14 73.1 10.2 84 20-110 3-96 (116)
311 3tjh_C 42F3 alpha; IG MHC, ant 99.1 1.2E-09 4.2E-14 80.0 12.3 82 19-107 11-99 (226)
312 1j05_L T84.66 antibody, anti-C 99.1 5.3E-10 1.8E-14 73.0 9.4 85 20-112 4-97 (111)
313 2nzi_A Titin; IG-domain, FNIII 99.1 1.1E-09 3.6E-14 83.7 12.6 74 21-111 108-182 (305)
314 2eo1_A OBSCN protein, cDNA FLJ 99.1 1.8E-10 6.1E-15 73.9 6.8 39 17-64 8-49 (102)
315 3so5_A LIG-3, leucine-rich rep 99.1 3.8E-10 1.3E-14 73.2 8.4 43 13-62 6-50 (112)
316 1fo0_A Protein (BM3.3 T cell r 99.1 5.8E-10 2E-14 73.4 9.4 84 20-110 3-94 (116)
317 1eeq_A Kappa-4 immunoglobulin 99.1 8.6E-10 2.9E-14 72.3 10.1 85 20-112 4-99 (114)
318 1iam_A ICAM-1, CD54, intercell 99.1 1.1E-09 3.8E-14 77.8 11.2 76 127-206 52-131 (185)
319 1kgc_D T-cell receptor alpha c 99.1 7.8E-09 2.7E-13 75.0 15.6 80 20-108 3-88 (206)
320 2z35_A T-cell receptor alpha-c 99.1 4.4E-10 1.5E-14 73.5 8.1 36 20-62 3-38 (112)
321 1fo0_B Protein (BM3.3 T cell r 99.1 3.6E-10 1.2E-14 73.9 7.6 36 20-62 4-39 (112)
322 1dlf_L Anti-dansyl immunoglobu 99.1 6.2E-10 2.1E-14 72.9 8.7 85 20-112 4-98 (113)
323 3q0h_A T cell immunoreceptor w 99.1 4.5E-10 1.6E-14 74.1 8.1 40 126-165 72-113 (117)
324 2ens_A Advanced glycosylation 99.1 5.9E-11 2E-15 75.4 3.6 43 13-62 6-48 (96)
325 2ny1_B T-cell surface glycopro 99.1 4.4E-10 1.5E-14 79.7 8.6 70 125-204 68-137 (184)
326 2ywz_A NEW antigen receptor va 99.1 4.1E-10 1.4E-14 73.5 7.7 80 20-111 3-87 (111)
327 2jll_A NCAM2, neural cell adhe 99.1 4.1E-09 1.4E-13 83.2 15.0 81 16-111 99-179 (389)
328 3s35_X Vascular endothelial gr 99.1 1E-09 3.5E-14 72.6 9.8 100 23-166 14-116 (122)
329 1pew_A JTO2, A lambda-6 type i 99.1 7.2E-10 2.5E-14 72.1 8.8 81 24-111 7-93 (109)
330 1gl4_B Basement membrane-speci 99.1 5.4E-10 1.8E-14 71.1 8.0 35 21-62 14-49 (98)
331 2ak4_D SB27 T cell receptor al 99.1 3.8E-09 1.3E-13 77.0 13.3 37 19-62 5-42 (211)
332 3khq_A B-cell antigen receptor 99.1 7.6E-10 2.6E-14 74.7 8.9 79 17-109 17-96 (133)
333 3u1s_H FAB PGT145 heavy chain; 99.1 3.5E-09 1.2E-13 79.8 13.5 80 25-109 31-121 (267)
334 2eys_A NKT15; natural killer T 99.1 5E-09 1.7E-13 76.2 13.9 82 20-108 6-93 (210)
335 3moq_A NEW antigen receptor va 99.1 7.3E-10 2.5E-14 74.0 8.5 36 19-61 2-39 (126)
336 1zox_A CLM-1; IG-superfamily, 99.1 1.6E-09 5.6E-14 70.8 10.0 33 23-62 7-40 (113)
337 2atp_B T-cell surface glycopro 99.1 6.9E-10 2.4E-14 72.9 8.1 83 22-111 3-100 (115)
338 1wwb_X Protein (brain derived 99.1 1.1E-09 3.8E-14 70.5 8.9 29 30-66 14-42 (103)
339 3rjd_A High affinity immunoglo 99.1 2E-09 6.8E-14 80.3 11.6 104 99-207 15-126 (262)
340 1sq2_N Novel antigen receptor; 99.1 6.4E-10 2.2E-14 72.9 7.8 81 20-111 3-87 (113)
341 2or8_A Hepatitis A virus cellu 99.1 4.2E-10 1.4E-14 73.9 6.9 33 23-62 3-36 (116)
342 1zvo_C Myeloma immunoglobulin 99.1 2.3E-09 7.8E-14 88.3 12.7 76 126-207 362-446 (512)
343 3u6r_L Antibody 1:7 (light cha 99.1 4.3E-10 1.5E-14 76.8 7.0 36 20-62 3-38 (143)
344 2oi9_C V beta, T cell receptor 99.1 1.8E-09 6.2E-14 71.6 9.9 86 19-112 3-96 (121)
345 2d9c_A Signal-regulatory prote 99.1 3.5E-10 1.2E-14 76.6 6.5 40 17-63 8-48 (136)
346 2coq_A NEW antigen receptor va 99.0 6.2E-10 2.1E-14 72.3 7.3 82 20-110 3-86 (108)
347 2nw2_A ELS4 TCR alpha chain; T 99.0 1.1E-08 3.6E-13 74.0 14.6 80 21-108 4-88 (200)
348 3dmm_C T-cell surface glycopro 99.0 1.3E-09 4.5E-14 76.1 9.3 38 18-62 10-47 (166)
349 4acp_A IG gamma-1 chain C regi 99.0 2.5E-10 8.6E-15 84.9 6.0 78 126-206 90-174 (240)
350 1oga_D T-cell receptor alpha c 99.0 4.7E-09 1.6E-13 76.7 12.5 35 20-62 4-38 (215)
351 3bp6_A Programmed cell death p 99.0 2.4E-09 8.2E-14 70.5 9.9 35 21-62 3-38 (117)
352 2qhl_A Novel immune-type recep 99.0 7.3E-10 2.5E-14 72.3 7.2 82 23-112 5-98 (111)
353 2cr3_A Basic fibroblast growth 99.0 2.4E-10 8.3E-15 73.0 4.7 33 22-62 8-40 (99)
354 2q87_A CMRF35-H antigen; all-b 99.0 6.3E-10 2.2E-14 72.4 6.7 32 24-62 3-35 (110)
355 1u3h_A T-cell receptor alpha-c 98.6 2.6E-11 8.7E-16 79.2 0.0 84 21-111 3-92 (110)
356 3gsn_A RA14 TCR alpha chain (T 99.0 2.6E-10 8.8E-15 82.2 5.2 36 20-62 3-38 (199)
357 4hwu_A Fibroblast growth facto 99.0 8.1E-10 2.8E-14 69.8 7.0 34 22-65 6-39 (95)
358 3t0v_A Immunoglobulin variable 99.0 1.1E-09 3.6E-14 72.9 7.7 37 18-62 2-40 (123)
359 1hkf_A NKP44, NK cell activati 99.0 1.4E-09 4.7E-14 72.3 8.2 39 19-62 12-50 (122)
360 1he7_A High affinity nerve gro 99.0 1.6E-09 5.5E-14 72.0 8.4 87 31-162 14-101 (126)
361 1nez_G T-cell surface glycopro 99.0 2E-09 6.9E-14 72.1 9.0 86 17-110 4-105 (128)
362 2hp4_A T-cell surface glycopro 99.0 1.4E-09 4.8E-14 71.4 7.8 84 20-111 3-98 (114)
363 3bn3_B ICAM-5, intercellular a 99.0 3.6E-09 1.2E-13 75.8 10.5 77 127-206 54-134 (196)
364 3r8b_B G5-8, enterotoxin type 99.0 2.8E-09 9.7E-14 71.1 9.4 38 18-62 6-43 (125)
365 2i24_N NEW antigen receptor PB 99.0 2.5E-09 8.5E-14 70.9 8.8 81 20-109 3-85 (121)
366 2otu_A FV light chain variable 99.0 3.5E-09 1.2E-13 69.5 9.4 82 20-110 5-96 (115)
367 2v9t_A Roundabout homolog 1; s 99.0 4.3E-10 1.5E-14 73.9 5.0 41 15-62 7-47 (117)
368 3rrq_A Protein PD-1, programme 99.0 4E-09 1.4E-13 70.7 9.7 35 20-61 4-39 (129)
369 4dep_C Interleukin-1 receptor 99.0 1.2E-09 4E-14 85.2 8.1 82 125-207 79-168 (349)
370 2q86_A Valpha14 TCR; INKT cell 99.0 4.9E-09 1.7E-13 77.3 10.9 36 20-62 4-39 (229)
371 2r15_A Myomesin-1; sarcomeric 99.0 2.9E-09 9.8E-14 76.9 9.4 36 22-65 122-157 (212)
372 3bj9_1 Immunoglobulin IOTA cha 99.0 9.8E-09 3.4E-13 67.3 11.2 80 25-111 6-98 (116)
373 3rbs_A Myomesin-1; immunoglobu 99.0 9.8E-10 3.4E-14 79.8 6.8 75 17-111 117-192 (207)
374 1lp9_E T-cell receptor alpha c 99.0 1.9E-09 6.4E-14 77.5 8.1 81 20-107 4-90 (194)
375 1eaj_A Coxsackie virus and ade 99.0 8.2E-10 2.8E-14 73.1 5.8 42 17-62 5-47 (126)
376 2xt1_B Camelid VHH 9; viral pr 99.0 6E-09 2.1E-13 69.0 9.9 80 24-110 9-101 (121)
377 3mj6_A Junctional adhesion mol 99.0 3.1E-09 1.1E-13 79.7 9.6 73 125-202 84-160 (268)
378 3dmm_D T-cell surface glycopro 99.0 4E-09 1.4E-13 72.6 9.2 38 18-62 2-40 (150)
379 2ptt_A CD48 antigen; CD244, CD 99.0 3.8E-09 1.3E-13 68.7 8.7 34 24-64 10-44 (110)
380 1neu_A Myelin P0 protein; stru 99.0 2.4E-09 8.2E-14 71.0 7.7 33 23-62 5-41 (124)
381 2wqr_A IG epsilon chain C regi 99.0 7.8E-10 2.7E-14 85.5 5.9 78 21-111 117-199 (323)
382 1p4b_L Antibody variable light 98.9 4.3E-09 1.5E-13 71.1 8.6 85 18-111 7-99 (135)
383 2qsq_A Carcinoembryonic antige 98.9 7.5E-10 2.6E-14 72.3 4.6 34 22-62 5-38 (111)
384 1u9k_A Triggering receptor exp 98.9 6.6E-09 2.2E-13 68.1 9.2 82 23-111 5-97 (114)
385 3u83_A Poliovirus receptor-rel 98.9 3.9E-09 1.3E-13 81.5 9.4 77 124-200 91-173 (331)
386 2p1y_A Bispecific alpha/beta T 98.9 3.3E-09 1.1E-13 78.2 8.6 37 19-62 129-165 (238)
387 3noi_A Natural cytotoxicity tr 98.9 1E-09 3.4E-14 72.7 5.1 36 23-62 13-49 (120)
388 1oaq_L Light chain; antibody, 98.9 1.4E-09 4.7E-14 72.0 5.7 34 21-62 5-41 (120)
389 4gjt_B Poliovirus receptor-rel 98.9 3.8E-09 1.3E-13 70.2 7.8 36 23-62 6-41 (123)
390 3bik_B Programmed cell death p 98.9 1.1E-08 3.8E-13 69.0 10.2 37 19-62 11-48 (134)
391 2nms_A CMRF35-like-molecule 1; 98.9 9.6E-09 3.3E-13 68.4 9.6 33 24-62 9-41 (124)
392 2oyp_A Hepatitis A virus cellu 98.9 2.1E-09 7.3E-14 69.5 6.3 33 26-62 3-35 (109)
393 2wv3_A Neuroplastin; igcam, me 98.9 7.3E-09 2.5E-13 73.7 9.5 38 17-61 92-129 (190)
394 3o4o_C Interleukin-1 receptor 98.9 5.1E-10 1.7E-14 86.9 3.6 108 100-208 33-169 (339)
395 2or7_A T-cell immunoglobulin a 98.9 1.6E-09 5.5E-14 71.0 5.5 32 24-62 4-37 (115)
396 4fa8_A Secreted protein BARF1; 98.9 6.5E-10 2.2E-14 80.5 3.9 41 17-64 106-146 (203)
397 1xt5_A Variable region-contain 98.9 4.3E-09 1.5E-13 70.8 7.7 38 19-63 6-46 (135)
398 1kxv_C Camelid VHH domain CAB1 98.9 6.6E-09 2.3E-13 68.8 8.5 80 25-109 8-97 (121)
399 1xed_A Polymeric-immunoglobuli 98.9 4.6E-09 1.6E-13 69.2 7.6 33 23-62 6-41 (117)
400 2pnd_A V-SET and immunoglobuli 98.9 3.3E-09 1.1E-13 70.1 6.9 36 22-61 6-41 (119)
401 1n4x_H Immunoglobulin heavy ch 98.9 1E-08 3.6E-13 67.7 9.4 80 24-110 7-99 (120)
402 2yd6_A PTPRD protein; hydrolas 98.9 6.8E-09 2.3E-13 75.2 9.1 39 17-62 108-146 (212)
403 1nko_A Sialic acid binding IG- 98.9 2.1E-09 7.3E-14 72.2 5.8 34 22-62 11-51 (132)
404 1xau_A B- and T-lymphocyte att 98.9 1.6E-08 5.4E-13 64.2 9.1 37 24-67 21-58 (122)
405 2ol3_A BM3.3 T-cell receptor a 98.9 4.1E-09 1.4E-13 71.9 7.1 36 20-62 3-39 (142)
406 3juy_B 3B3 single chain varian 98.9 1.2E-08 4E-13 76.2 10.3 87 17-111 149-241 (256)
407 2yc1_A Single chain antibody f 98.9 1.3E-08 4.3E-13 67.0 9.3 80 24-110 7-99 (117)
408 4f9l_D 20.1 anti-BTN3A1 antibo 98.9 3.6E-08 1.2E-12 72.4 12.4 82 20-109 4-90 (259)
409 2h32_A Immunoglobulin IOTA cha 98.9 2.2E-08 7.5E-13 66.8 10.5 35 24-62 7-41 (126)
410 3kg5_A B-cell antigen receptor 98.9 1E-08 3.4E-13 69.2 8.8 35 19-61 20-54 (134)
411 1a2y_B IGG1-kappa D1.3 FV (hea 98.9 1.3E-08 4.6E-13 66.8 9.1 82 25-111 8-99 (116)
412 1ncn_A T lymphocyte activation 98.9 8.5E-09 2.9E-13 66.9 8.1 35 26-64 3-39 (110)
413 3umt_A SCFV heavy chain and li 98.9 1.2E-08 3.9E-13 76.3 9.9 38 17-61 138-175 (256)
414 2a38_A Titin; Z1Z2, structural 98.9 3.7E-09 1.3E-13 75.3 6.9 40 16-62 102-141 (194)
415 1mfa_H IGG1-lambda Se155-4 FAB 98.9 1.3E-08 4.5E-13 67.2 9.1 82 24-110 7-99 (120)
416 1yc7_A Anti-VSG immunoglobulin 98.9 1.6E-08 5.5E-13 67.2 9.5 82 24-110 7-98 (124)
417 1zxq_A ICAM-2, intercellular a 98.9 2.5E-08 8.7E-13 70.9 11.0 76 127-206 54-133 (192)
418 2v44_A NCAM2, neural cell adhe 98.9 4E-09 1.4E-13 74.9 6.9 41 16-63 95-135 (189)
419 2ghw_B Anti-SARS SCFV antibody 98.9 2E-08 6.7E-13 74.5 11.0 38 17-61 135-172 (247)
420 3gkz_A Anti-methamphetamine si 98.9 2.4E-08 8E-13 74.6 11.4 38 17-61 141-179 (257)
421 2j8h_A Titin, connectin; cardi 98.9 6.9E-09 2.4E-13 74.1 8.1 38 20-65 107-144 (197)
422 1j05_H T84.66 antibody, anti-C 98.9 2.1E-08 7.3E-13 66.3 9.8 34 24-62 7-40 (121)
423 3b9v_A Heavy chain variable do 98.9 1.6E-08 5.3E-13 66.8 9.1 82 24-110 7-99 (120)
424 2p45_B Antibody CAB-RN05; seMe 98.9 1.8E-08 6.2E-13 66.8 9.4 80 25-111 10-102 (123)
425 3qjh_A 5C.C7 alpha chain; immu 98.9 9.7E-09 3.3E-13 74.3 8.6 82 20-109 6-91 (205)
426 1sjv_A R9; camelids antibody, 98.9 6.6E-09 2.3E-13 68.0 7.0 81 24-111 7-99 (114)
427 1qfo_A Protein (sialoadhesin); 98.9 7.7E-09 2.6E-13 68.1 7.4 84 24-111 7-100 (119)
428 3uzq_A Anti-dengue MAB 4E11; d 98.9 1E-08 3.6E-13 76.4 8.9 38 17-61 133-174 (253)
429 2iep_A Muscle-specific kinase 98.9 3.9E-09 1.3E-13 75.0 6.2 40 16-62 99-138 (192)
430 1xiw_D Immunoglobulin heavy ch 98.9 1.8E-08 6.1E-13 66.8 9.0 81 24-109 7-98 (122)
431 2d7t_H Anti polyhydroxybutyrat 98.9 3.2E-08 1.1E-12 67.1 10.5 79 24-109 7-98 (139)
432 2wzp_D Camelid VHH5; baseplate 98.8 2.3E-08 7.9E-13 66.3 9.4 34 24-62 7-40 (123)
433 2vsd_A CHIR AB1; immune system 98.8 5.6E-09 1.9E-13 67.4 6.1 37 16-61 4-40 (105)
434 2frg_P TREM-like transcript-1; 98.8 1.7E-08 5.8E-13 65.2 8.3 32 24-62 4-36 (106)
435 1nqb_A Single-chain antibody f 98.8 3.2E-08 1.1E-12 74.0 11.0 38 17-61 121-163 (256)
436 3bia_X T-cell immunoglobulin a 98.8 7.1E-09 2.4E-13 68.0 6.5 32 24-62 3-36 (116)
437 1kxt_B Immunoglobulin VHH frag 98.8 2.3E-08 8E-13 66.7 9.1 81 24-111 7-99 (127)
438 3udw_C Poliovirus receptor; PV 98.8 7.5E-09 2.6E-13 67.7 6.6 35 24-62 7-43 (118)
439 1dqt_A CTLA4, cytotoxic T lymp 98.8 2.5E-08 8.6E-13 65.5 9.1 35 24-62 6-40 (117)
440 1mqk_H Antibody 7E2 FV fragmen 98.8 1.6E-08 5.3E-13 67.6 8.1 78 25-109 8-98 (127)
441 3bdb_A Novel immune-type recep 98.8 4.5E-09 1.5E-13 71.2 5.3 32 24-62 6-38 (137)
442 3tf7_C 42F3 MUT7 SCFV (42F3 al 98.8 1.7E-08 5.8E-13 75.4 9.0 38 16-61 136-173 (256)
443 2vr9_A Roundabout 1, ROBO; imm 98.8 5.9E-09 2E-13 75.6 6.3 41 17-65 108-149 (217)
444 3b5h_A Cervical EMMPRIN, HAB18 98.8 8.2E-09 2.8E-13 72.9 6.8 38 16-60 82-120 (184)
445 2cry_A KIN of IRRE-like protei 98.8 7.2E-10 2.5E-14 73.5 1.2 41 15-62 12-52 (122)
446 1za6_B IGG heavy chain; immuno 98.8 1.1E-08 3.9E-13 79.7 8.1 79 123-204 77-162 (344)
447 1f2q_A High affinity immunoglo 98.8 1.1E-08 3.7E-13 72.0 7.2 65 99-163 99-174 (176)
448 1i3u_A Antibody VHH LAMA domai 98.8 2E-08 6.9E-13 67.0 8.2 82 24-110 7-104 (127)
449 1b6u_A KIR2DL3, P58 killer cel 98.8 6.6E-09 2.3E-13 78.0 6.4 129 16-201 106-240 (257)
450 1dlf_H Anti-dansyl immunoglobu 98.8 2.4E-08 8.2E-13 66.4 8.5 33 25-62 8-40 (124)
451 2gki_A Nuclease; anti-DNA anti 98.8 3.4E-08 1.2E-12 75.3 10.3 42 17-62 159-203 (291)
452 3r0n_A Poliovirus receptor-rel 98.8 5.3E-09 1.8E-13 69.8 5.1 34 24-61 9-43 (128)
453 3k1k_C Enhancer; nanobody, ant 98.8 3.3E-08 1.1E-12 65.7 8.9 84 20-111 6-102 (123)
454 1rjc_A 1D2L19, camelid heavy c 98.8 4.1E-08 1.4E-12 66.5 9.5 80 24-110 7-99 (137)
455 3lh2_H FV 4E10 heavy chain; ep 98.8 4.6E-08 1.6E-12 66.1 9.7 83 19-109 5-100 (137)
456 3u6r_H Antibody 1:7 (heavy cha 98.8 4.5E-08 1.5E-12 67.2 9.7 79 24-109 10-101 (149)
457 3esu_F Antibody 14B7* light ch 98.8 2.2E-08 7.5E-13 74.4 8.7 84 20-110 134-230 (250)
458 1zvh_A Immunoglobulin heavy ch 98.8 3.2E-08 1.1E-12 66.7 8.7 81 24-109 7-98 (134)
459 1f3r_B FV antibody fragment; I 98.8 1.4E-08 4.8E-13 76.0 7.6 36 19-61 141-176 (257)
460 1ugn_A LIR1, leukocyte immunog 98.8 1.1E-08 3.7E-13 73.4 6.6 37 17-62 101-137 (198)
461 1q8m_A Triggering receptor exp 98.8 3.2E-08 1.1E-12 65.9 8.4 36 20-62 7-44 (127)
462 3iy0_H FAB 14, heavy domain; c 98.8 7.1E-08 2.4E-12 63.7 10.0 80 25-109 8-98 (120)
463 3k74_B Nanobody; immunoglobuli 98.8 3E-08 1E-12 65.0 8.1 83 24-111 5-98 (115)
464 1wwc_A Protein (NT-3 growth fa 98.8 2.6E-08 8.9E-13 65.4 7.8 38 126-163 66-104 (118)
465 1zvy_A Immunoglobulin heavy ch 98.8 3.8E-08 1.3E-12 66.5 8.7 80 25-111 8-100 (136)
466 2edo_A CD48 antigen; beta-sand 98.8 2.1E-09 7.3E-14 71.2 2.3 36 21-63 8-44 (121)
467 1epf_A NCAM, protein (neural c 98.8 3.7E-09 1.3E-13 75.1 3.7 40 16-62 99-138 (191)
468 2x1w_L Vascular endothelial gr 98.8 6.9E-08 2.4E-12 70.0 10.5 39 126-164 172-211 (213)
469 2v9r_A Roundabout homolog 1; p 98.8 2.9E-08 9.9E-13 71.5 8.4 95 17-166 111-208 (212)
470 1jtp_A Single-domain antibody; 98.8 7.6E-08 2.6E-12 66.0 10.1 33 25-62 8-40 (148)
471 1qok_A MFE-23 recombinant anti 98.8 6.3E-08 2.1E-12 73.4 10.4 36 18-61 163-198 (282)
472 2yd1_A Tyrosine-protein phosph 98.8 2E-08 6.7E-13 72.7 7.3 38 18-62 111-148 (212)
473 2x1q_A Gelsolin nanobody; cont 98.8 3E-08 1E-12 66.2 7.6 80 24-110 7-99 (127)
474 3zyj_A Leucine-rich repeat-con 98.8 1.9E-08 6.6E-13 81.1 7.8 95 17-163 341-436 (440)
475 3cx5_J Heavy chain (VH) of FV- 98.8 2.6E-08 9.1E-13 66.5 7.2 81 25-109 8-98 (127)
476 4frw_A Poliovirus receptor-rel 98.8 1.4E-08 4.9E-13 73.1 6.3 72 88-159 77-210 (218)
477 3k81_A Single strand antibody 98.7 2.5E-08 8.4E-13 66.6 6.8 31 25-62 8-40 (127)
478 3r08_E T-cell surface glycopro 98.7 3.4E-09 1.2E-13 64.8 2.2 59 24-110 6-65 (82)
479 3osk_A Cytotoxic T-lymphocyte 98.7 8E-08 2.7E-12 64.4 9.2 38 20-62 5-42 (130)
480 3mjg_X Beta-type platelet-deri 98.7 8.1E-08 2.8E-12 72.7 10.2 104 99-205 14-137 (289)
481 2d3v_A Leukocyte immunoglobuli 98.7 1.1E-08 3.8E-13 73.2 5.1 37 17-62 100-136 (196)
482 3tpk_A Immunoglobulin heavy ch 98.7 7.8E-08 2.7E-12 65.0 8.8 32 26-62 13-44 (136)
483 3r0m_A Llama VHH A12; IG domai 98.7 9E-08 3.1E-12 65.2 9.1 34 24-62 7-40 (143)
484 4hwn_A FC receptor-like A; FCR 98.7 2.4E-08 8.2E-13 64.7 6.0 46 16-65 7-52 (108)
485 3g9a_B Minimizer; antibody com 98.7 4.8E-08 1.6E-12 66.1 7.6 81 26-111 11-101 (139)
486 3eak_A NBBCII10-FGLA; antibody 98.7 5.3E-08 1.8E-12 65.9 7.9 35 24-62 7-43 (137)
487 3nn8_A Engineered SCFV, heavy 98.7 9.7E-08 3.3E-12 63.2 8.9 79 24-109 7-99 (122)
488 1moe_A Anti-CEA MAB T84.66; an 98.7 1.1E-07 3.6E-12 70.1 9.9 35 20-61 122-158 (240)
489 2pkd_A SLAM family member 5; s 98.7 9.7E-09 3.3E-13 66.9 3.8 32 23-60 5-36 (111)
490 3p2t_A Leukocyte immunoglobuli 98.7 2.9E-08 1E-12 71.0 6.6 37 17-62 100-136 (196)
491 2vyr_E Human single domain ant 98.7 1.2E-07 4.2E-12 65.3 9.3 78 25-109 8-98 (153)
492 1svz_A Immunoglobulin;, single 98.7 7.3E-08 2.5E-12 71.4 8.6 31 25-62 135-167 (247)
493 3uto_A Twitchin; kinase, muscl 98.7 5.9E-08 2E-12 80.9 8.7 78 16-110 481-558 (573)
494 3omz_A Human vdelta1 gamma del 98.7 3.1E-08 1.1E-12 74.1 6.4 39 17-62 136-175 (259)
495 2znx_A SCFV; fluorotryptohpan, 98.7 8.3E-08 2.8E-12 71.0 8.7 79 26-111 131-221 (242)
496 3auv_A SC-DSFV derived from th 98.7 7.7E-08 2.6E-12 72.7 8.6 33 23-62 140-174 (276)
497 2c5d_C AXL oncogene, tyrosine- 98.7 6.2E-08 2.1E-12 69.0 7.6 40 16-62 105-145 (195)
498 3k0w_A Mucosa-associated lymph 98.7 7.4E-08 2.5E-12 70.1 8.1 38 17-61 118-155 (218)
499 3s97_C Contactin-1; carbonic a 98.7 4E-08 1.4E-12 70.1 6.4 40 17-63 113-152 (201)
500 3k3q_A Llama AA1 VHH domain; l 98.7 2.7E-07 9.3E-12 63.4 10.2 20 25-44 11-30 (151)
No 1
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.92 E-value=3.8e-23 Score=157.59 Aligned_cols=175 Identities=23% Similarity=0.410 Sum_probs=134.3
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+ ....++.....+ ....|.|.
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~-------v~W~~~-~~~~--------~~~~~~~~~~~~-~~~~L~i~ 66 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-------ITWAKD-NREI--------RPGGNYKMTLVE-NTATLTVL 66 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSCCE-------EEEEET-TEEC--------CSSSSEEEEEET-TEEEEEES
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCCCE-------EEEEEC-CEEC--------cCCCcEEEEEcC-CEEEEEEe
Confidence 468888888999999999999999999877776 999994 4432 223344444332 46789999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEcc-----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYND----------- 121 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~----------- 121 (215)
+++.+|+|.|+|.+.+ .|.+.+.|..
T Consensus 67 ~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~ 146 (284)
T 2rik_A 67 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 146 (284)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSE
T ss_pred cCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcE
Confidence 9999999999998752 3455566622
Q ss_pred -----CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeE
Q psy5838 122 -----HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195 (215)
Q Consensus 122 -----~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i 195 (215)
.....|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~~~~g~~v~l~C~~~g~p~~~v 224 (284)
T 2rik_A 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK--KPHPVETLKGADVHLECELQGTPPFQV 224 (284)
T ss_dssp EEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCS--CCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred EEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCccee--CCCcceecCCCeEEEEEEEEecCCCEE
Confidence 12356999999999999999999763 4455667788888887664 234556889999999999999999999
Q ss_pred EEEeCCCccccccCC
Q psy5838 196 MWRREDGANLSYNGD 210 (215)
Q Consensus 196 ~W~~~~~~~~~~~~~ 210 (215)
.|++ ++..+....+
T Consensus 225 ~W~~-~~~~~~~~~~ 238 (284)
T 2rik_A 225 SWHK-DKRELRSGKK 238 (284)
T ss_dssp EEEE-TTEEECBTTT
T ss_pred EEEE-CCEECcCCCC
Confidence 9999 7777765543
No 2
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.90 E-value=6e-23 Score=156.88 Aligned_cols=177 Identities=23% Similarity=0.464 Sum_probs=132.1
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+.|...|....+.+|++++|.|.+.+.+ .+. +.|++.++..+. ....++.+...+...+.|.|.
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~-------i~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~i~ 67 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKD-------ISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIY 67 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCE-------EEEECTTSCBCC-------SSCSSEEEEEEETTEEEEEEC
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcE-------eEEECCCCeECc-------cCCceEEEEEcCCCeEEEEEe
Confidence 45677778889999999999999999865 455 999995555432 123455555544467799999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEccC----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYNDH---------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~~---------- 122 (215)
+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 68 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 147 (291)
T 1qz1_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV 147 (291)
T ss_dssp SCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCT
T ss_pred cCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCc
Confidence 9999999999998763 34455666221
Q ss_pred -----CeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCe
Q psy5838 123 -----RSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194 (215)
Q Consensus 123 -----~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 194 (215)
.+..|.|.+++.+|+|.|+|.+.+.. .....+.+.|..+|.+..........+.+|+.+.|.|.+.|.|.|.
T Consensus 148 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~ 227 (291)
T 1qz1_A 148 RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227 (291)
T ss_dssp TEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE
T ss_pred eEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCc
Confidence 12358999999999999999997532 2234556777778877654344455678999999999999999999
Q ss_pred EEEEeCCCcccccc
Q psy5838 195 VMWRREDGANLSYN 208 (215)
Q Consensus 195 i~W~~~~~~~~~~~ 208 (215)
+.|++ +|..+...
T Consensus 228 i~W~~-~g~~~~~~ 240 (291)
T 1qz1_A 228 MSWTK-DGEPIENE 240 (291)
T ss_dssp EEEEE-TTEECCCC
T ss_pred EEEEE-CCEECcCC
Confidence 99999 77776544
No 3
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.90 E-value=3.5e-22 Score=166.62 Aligned_cols=176 Identities=23% Similarity=0.410 Sum_probs=134.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+|+ +..+ ....++.....+ ....|.|.
T Consensus 196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-------i~W~k~-g~~i--------~~~~~~~~~~~~-~~~~L~i~ 258 (570)
T 3b43_A 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-------ITWAKD-NREI--------RPGGNYKMTLVE-NTATLTVL 258 (570)
T ss_dssp CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCE-------EEEEET-TEEC--------CTTSSEEEEEET-TEEEEEES
T ss_pred CCCccccCCceeEecCCCeEEEEEEEEECCCCE-------EEEEEC-CEEC--------cCCCcEEEEEEC-CEEEEEEc
Confidence 356677777788889999999999999988777 999994 4432 223344443332 45689999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEccC----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYNDH---------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~~---------- 122 (215)
+++.+|+|.|+|.|.+ .|.+.+.|...
T Consensus 259 ~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~ 338 (570)
T 3b43_A 259 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338 (570)
T ss_dssp SBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSE
T ss_pred ccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcE
Confidence 9999999999998752 45566777321
Q ss_pred ------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeE
Q psy5838 123 ------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195 (215)
Q Consensus 123 ------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i 195 (215)
....|.|.+++.+|+|.|+|.+.+ .+.......|.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+
T Consensus 339 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~--~~~~~~~~~G~~v~l~C~~~g~P~p~v 416 (570)
T 3b43_A 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK--KPHPVETLKGADVHLECELQGTPPFQV 416 (570)
T ss_dssp EEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECS--CCCCEEECTTCCEEEEEEEESSSSCCC
T ss_pred EEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeec--CCCceeecCCCEEEEEEEEecCCCCEE
Confidence 234688999999999999999976 45556677889988887764 344556789999999999999999999
Q ss_pred EEEeCCCccccccCCc
Q psy5838 196 MWRREDGANLSYNGDT 211 (215)
Q Consensus 196 ~W~~~~~~~~~~~~~~ 211 (215)
.|++ +|..+..+.++
T Consensus 417 ~W~k-~g~~l~~~~~~ 431 (570)
T 3b43_A 417 SWHK-DKRELRSGKKY 431 (570)
T ss_dssp EEEE-TTEECCSSSSE
T ss_pred EEEE-CCEECcCCCCE
Confidence 9999 78777655443
No 4
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=153.60 Aligned_cols=176 Identities=24% Similarity=0.432 Sum_probs=130.7
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+..+.+.+|++++|.|.+.+.+. . +.|++.++..+ ....++.+..++ ....|.|.
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~-------v~W~~~~g~~~--------~~~~~~~~~~~~-~~~~L~i~ 65 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-S-------IDWYNPQGEKI--------ISTQRVVVQKEG-VRSRLTIY 65 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-E-------EECBCTTCCBC--------CCBTTEEEEEET-TEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-c-------eEEECCCCcCc--------cCCCcEEEecCC-CEEEEEEc
Confidence 3688888889999999999999999998654 4 99999655543 223455554433 45689999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEccC----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYNDH---------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~~---------- 122 (215)
+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 66 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 145 (291)
T 2wim_A 66 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145 (291)
T ss_dssp SCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCS
T ss_pred cCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCc
Confidence 9999999999998763 34456666321
Q ss_pred -----CeEEEEEcccCCCCCeEEEEEeecCC-C--cceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCe
Q psy5838 123 -----RSWFLNIKNVQESDRGWYMCQVNTDP-M--RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194 (215)
Q Consensus 123 -----~~~~l~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 194 (215)
.+..|.|.+++.+|+|.|+|.+.+.. . ....+.+.+..+|.+..........+.+|+.+.|.|.+.+.|.|.
T Consensus 146 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~ 225 (291)
T 2wim_A 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225 (291)
T ss_dssp SEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE
T ss_pred eEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCe
Confidence 12348999999999999999997543 2 234456777778776543222244578899999999999999999
Q ss_pred EEEEeCCCccccccC
Q psy5838 195 VMWRREDGANLSYNG 209 (215)
Q Consensus 195 i~W~~~~~~~~~~~~ 209 (215)
+.|++ +|..+....
T Consensus 226 v~W~~-~g~~~~~~~ 239 (291)
T 2wim_A 226 ISWFR-NGKLIEENE 239 (291)
T ss_dssp EEEEE-TTEECCCTT
T ss_pred EEEEE-CCEECcCCc
Confidence 99999 787766443
No 5
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.6e-21 Score=162.65 Aligned_cols=175 Identities=21% Similarity=0.411 Sum_probs=130.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|..++..+.+.+|++++|.|.+.+.+.+. +.|+|+ +..+ ....++.+...+ ..+.|.|.
T Consensus 4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~-------v~W~k~-g~~l--------~~~~~~~~~~~~-~~~~L~I~ 66 (570)
T 3b43_A 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIR-------IAWYKE-HTKL--------RSAPAYKMQFKN-NVASLVIN 66 (570)
T ss_dssp CCCEEEECCCCEEECTTSCEEEEEEEESSSSCE-------EEEECS-SSBC--------CCCSSEEEECCT-TEEEEEES
T ss_pred CCCcceEECCceEEcCCCEEEEEEEEccCCCCE-------EEEEEC-CEEc--------cCCCCEEEEEEC-CEEEEEEc
Confidence 468899999999999999999999999988887 999995 4433 223444444332 46789999
Q ss_pred cceecCCEEEEEEccC---------------------------------------------CCceEEEEccC--------
Q psy5838 96 NVQESDRGWYMCQVNT---------------------------------------------NPRISLTYNDH-------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~~-------- 122 (215)
+++.+|+|.|+|.|.+ .|.+.+.|...
T Consensus 67 ~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~ 146 (570)
T 3b43_A 67 KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDA 146 (570)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCS
T ss_pred cCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCC
Confidence 9999999999999762 34456666321
Q ss_pred --------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEc---CCeEEecCCCcceeeecCCcEEEEEEeccc
Q psy5838 123 --------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVV---PPSIIDKDTSTDLVVREQANVTLNCKAQGY 190 (215)
Q Consensus 123 --------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 190 (215)
....|.|..+..+|+|.|+|.+.+. +.......+.|.. +|.+.. .+....+.+|+.+.|.|.+.|.
T Consensus 147 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~--~p~~~~v~~G~~~~l~C~~~g~ 224 (570)
T 3b43_A 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDL--KPVSVDLALGESGTFKCHVTGT 224 (570)
T ss_dssp SEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEE--CCCCBCCBSBSCEEEEEEEESS
T ss_pred CEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCcccc--CCceeEecCCCeEEEEEEEEEC
Confidence 1356899999999999999999764 3344445566643 454443 2344567899999999999999
Q ss_pred CCCeEEEEeCCCccccccCC
Q psy5838 191 PEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 191 p~~~i~W~~~~~~~~~~~~~ 210 (215)
|.+.+.|++ +|..+...++
T Consensus 225 p~p~i~W~k-~g~~i~~~~~ 243 (570)
T 3b43_A 225 APIKITWAK-DNREIRPGGN 243 (570)
T ss_dssp SCCEEEEEE-TTEECCTTSS
T ss_pred CCCEEEEEE-CCEECcCCCc
Confidence 999999999 7877765544
No 6
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.88 E-value=5.1e-21 Score=147.33 Aligned_cols=174 Identities=24% Similarity=0.380 Sum_probs=123.4
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEE-cCCceEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY-NDHRSWFLN 93 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 93 (215)
..+|.|...+....+.+|++++|.|.+.+.+.+. +.|+++ +..+ ...++.... .+.....|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~-------i~W~k~-g~~i---------~~~~~~~~~~~~~~~~~L~ 66 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPR-------VTWNKK-GKKV---------NSQRFETIEFDESAGAVLR 66 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCE-------EEEC-----------------CTTEEEEEETTTTEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCe-------EEEEEC-CEEC---------CCCceEEEEecCCCceEEE
Confidence 4578899999999999999999999999887776 999994 4433 233444433 233457899
Q ss_pred Ecccee-cCCEEEEEEccC-------------------------------------------------CCceEEEEccC-
Q psy5838 94 IKNVQE-SDRGWYMCQVNT-------------------------------------------------NPRISLTYNDH- 122 (215)
Q Consensus 94 i~~~~~-~d~G~Y~C~~~~-------------------------------------------------~~~~~~~~~~~- 122 (215)
|.+++. +|+|.|+|.+.+ .|.+.+.|...
T Consensus 67 i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~ 146 (304)
T 2yd9_A 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF 146 (304)
T ss_dssp ECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETT
T ss_pred EecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECC
Confidence 999998 999999998763 23345555221
Q ss_pred ---------------CeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEE---cCCeEEecCCCcceeeecCCcEE
Q psy5838 123 ---------------RSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVV---VPPSIIDKDTSTDLVVREQANVT 182 (215)
Q Consensus 123 ---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~~~ 182 (215)
.+..|.|.+++.+|+|.|+|.+.+.... .....+.|. .+|.+... +....+.+|+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~--~~~~~v~~G~~v~ 224 (304)
T 2yd9_A 147 LPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL--PMSHEIMPGGNVN 224 (304)
T ss_dssp EECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC--CCCBCCCTTCCEE
T ss_pred EECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec--CCceEEcCCCeEE
Confidence 1235899999999999999999764322 122455554 34555442 3345688999999
Q ss_pred EEEEecccCCCeEEEEeCCCcccccc
Q psy5838 183 LNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 183 l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
|.|.+.|.|.|.+.|++ +|..+...
T Consensus 225 l~C~~~g~p~p~v~W~~-~~~~l~~~ 249 (304)
T 2yd9_A 225 ITCVAVGSPMPYVKWMQ-GAEDLTPE 249 (304)
T ss_dssp EEEEEEEESCCEEEEEE-TTEECSCS
T ss_pred EEEEEeeeCCCEEEEEE-CCEECCCc
Confidence 99999999999999999 77776543
No 7
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=145.30 Aligned_cols=174 Identities=20% Similarity=0.352 Sum_probs=121.1
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
...|.|..+. .+.+.+|++++|.|.+.+. +.+. +.|+++ +..+ ....++.+. .....|.
T Consensus 5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~~~-~~~~--------~~~~~~~~~---~~~~~L~ 64 (317)
T 2y25_A 5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETH-------IVWYKD-EREI--------SVDEKHDFK---DGICTLL 64 (317)
T ss_dssp SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCE-------EEEEET-TEEE--------CCSCC--------CCEEEE
T ss_pred cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCE-------EEEEEC-CeEc--------CCCCcEEEE---CCeEEEE
Confidence 3468887655 5889999999999999876 5565 999994 4433 122333332 2346999
Q ss_pred EccceecCCEEEEEEccC----------------------------------------------------CCceEEEEcc
Q psy5838 94 IKNVQESDRGWYMCQVNT----------------------------------------------------NPRISLTYND 121 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~----------------------------------------------------~~~~~~~~~~ 121 (215)
|.+++.+|+|.|+|.+.+ .|.+.+.|..
T Consensus 65 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~ 144 (317)
T 2y25_A 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH 144 (317)
T ss_dssp ETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEE
T ss_pred EccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEE
Confidence 999999999999998752 3566777732
Q ss_pred ----------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEc--------------------CCeE
Q psy5838 122 ----------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVV--------------------PPSI 164 (215)
Q Consensus 122 ----------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~--------------------~p~~ 164 (215)
.....|.|.+++.+|+|.|+|.+.+. +.....+.+.+.. +|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 224 (317)
T 2y25_A 145 NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224 (317)
T ss_dssp SSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred CCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcc
Confidence 12244999999999999999999763 2223333333321 2333
Q ss_pred EecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
... .+....+.+|+.+.|.|.+.|.|.|.+.|++ +|..+....+
T Consensus 225 ~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~ 268 (317)
T 2y25_A 225 LGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDH 268 (317)
T ss_dssp EEB-CCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCCSS
T ss_pred ccc-CCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCCCc
Confidence 322 2345568899999999999999999999999 7777765443
No 8
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.84 E-value=1.9e-20 Score=149.26 Aligned_cols=172 Identities=27% Similarity=0.429 Sum_probs=126.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.+...+....+.+|+++.|.|.+.+.+.+. +.|++++ ..+... ....+.... ..+.|.|.+
T Consensus 121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~-------v~W~~~~-~~~~~~-----~~~~~~~~~----~~~~L~i~~ 183 (403)
T 3laf_A 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPT-------IHWQKNQ-QDLNPI-----PGDSRVVVL----PSGALQISR 183 (403)
T ss_dssp CCEECSCCCCEEEETTSCEEECCCEECSSCCE-------EEEEESS-SBCCCC-----TTCCSEEEC----TTSCEEECS
T ss_pred CCccccCCCcEEEEcCCeEEEEEEEcccCCCe-------EEEEECC-Eecccc-----CCceEEEEc----CCceEEEcc
Confidence 56777778889999999999999998877776 9999954 332100 111222221 234799999
Q ss_pred ceecCCEEEEEEccC-------------------------------------------------CCceEEEEccC-----
Q psy5838 97 VQESDRGWYMCQVNT-------------------------------------------------NPRISLTYNDH----- 122 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~-------------------------------------------------~~~~~~~~~~~----- 122 (215)
++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 184 ~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 263 (403)
T 3laf_A 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ 263 (403)
T ss_dssp CCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC
T ss_pred cccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeecc
Confidence 999999999998763 13344555221
Q ss_pred ---------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCC
Q psy5838 123 ---------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPE 192 (215)
Q Consensus 123 ---------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 192 (215)
.+..|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+... +....+.+|+.+.|.|.+.|.|.
T Consensus 264 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~ 341 (403)
T 3laf_A 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPV 341 (403)
T ss_dssp CSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEECCTTCCEEECCEEEEESC
T ss_pred CCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeec--CcceEEecCCeEEEEEEEeeccC
Confidence 1235899999999999999999753 44566677888888877653 44556889999999999999999
Q ss_pred CeEEEEeCCCcccccc
Q psy5838 193 PYVMWRREDGANLSYN 208 (215)
Q Consensus 193 ~~i~W~~~~~~~~~~~ 208 (215)
+.+.|++ +|..+...
T Consensus 342 p~v~W~~-~g~~~~~~ 356 (403)
T 3laf_A 342 PTVNWMK-NGDVVIPS 356 (403)
T ss_dssp CEEEEEE-TTEECCCS
T ss_pred CEEEEEE-CCEECCCC
Confidence 9999999 77766543
No 9
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.84 E-value=1.7e-20 Score=145.00 Aligned_cols=182 Identities=19% Similarity=0.274 Sum_probs=119.4
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEee----eceeeeCCceEEEEc----CCceEEE
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH----HNVITQNPRISLTYN----DHRSWFL 92 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~l 92 (215)
...|..+.+..|++|+|.|.+.+.+.+... + .++.|+|++........ ........|+.+... ...+++|
T Consensus 4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~-~-~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL 81 (313)
T 4fqp_A 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTH-V-SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81 (313)
T ss_dssp EECCSEECCBTTSCEEECCEEECCTTSCCC-C-CEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCE
T ss_pred EcCCCEEEEecCCCEEEEEEEECCCCCccc-e-EEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEE
Confidence 445678889999999999999876554210 0 02889996432211111 011122344443321 1245689
Q ss_pred EEccceecCCEEEEEEccC--------------------------------------------CCceEEEEccCC-----
Q psy5838 93 NIKNVQESDRGWYMCQVNT--------------------------------------------NPRISLTYNDHR----- 123 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~~----- 123 (215)
.|.+++.+|+|.|+|.+.. .|.+.+.|....
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~ 161 (313)
T 4fqp_A 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN 161 (313)
T ss_dssp EECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred EECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence 9999999999999998641 345566663210
Q ss_pred --------------eEEEEEcccCCCCCeEEEEEeecC-CCc--ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEE
Q psy5838 124 --------------SWFLNIKNVQESDRGWYMCQVNTD-PMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186 (215)
Q Consensus 124 --------------~~~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~ 186 (215)
...|.+..+...|+|.|+|.+.+. +.. ...+.+.|..+|.+.... .....+.+|+.+.|.|.
T Consensus 162 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~-~~~~~~~~g~~v~l~C~ 240 (313)
T 4fqp_A 162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG-YDNNWYLGQNEATLTCD 240 (313)
T ss_dssp EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEEC-CCSCEETTCCCEEEEEE
T ss_pred cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccc-ccceeecCCCeEEEEEE
Confidence 234788888899999999999763 222 334456666778765442 23334667899999999
Q ss_pred ecccCCC-eEEEEeCCCcccc
Q psy5838 187 AQGYPEP-YVMWRREDGANLS 206 (215)
Q Consensus 187 ~~~~p~~-~i~W~~~~~~~~~ 206 (215)
+.|+|.| .+.|++ +|..+.
T Consensus 241 ~~g~P~p~~v~W~~-~~~~l~ 260 (313)
T 4fqp_A 241 ARSNPEPTGYNWST-TMGPLP 260 (313)
T ss_dssp EEEESCCCEEEEEE-TTBSCC
T ss_pred ecCCCCCcEEEEEE-CCEECC
Confidence 9999988 699999 666553
No 10
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=145.38 Aligned_cols=173 Identities=18% Similarity=0.329 Sum_probs=115.6
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEE--eee--cee----eeCCceEEEEcCCceEEEEEcc
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS--IHH--NVI----TQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~--~~~--~~~----~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
..+++.+|++++|.|.+.+...+. .+.|+|.++..... ... ... ....|+.+.......++|.|.+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~------~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 80 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETIT------QISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHN 80 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEE------EEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECS
T ss_pred CEeEEEcCCcEEEEEEecCCCCCc------EEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEcc
Confidence 368899999999999987543322 28999965433211 110 000 1124444433333567899999
Q ss_pred ceecCCEEEEEEccC----------------------------------------------CCceEEEEccC--------
Q psy5838 97 VQESDRGWYMCQVNT----------------------------------------------NPRISLTYNDH-------- 122 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~----------------------------------------------~~~~~~~~~~~-------- 122 (215)
++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 81 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~ 160 (308)
T 4fom_A 81 IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT 160 (308)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE
T ss_pred CCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc
Confidence 999999999998752 35566677321
Q ss_pred ---------CeEEEEEcccCCCCCeEEEEEeecC-CCc--ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEeccc
Q psy5838 123 ---------RSWFLNIKNVQESDRGWYMCQVNTD-PMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190 (215)
Q Consensus 123 ---------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 190 (215)
....|.|..+...|+|.|+|.+.+. +.. ...+.|.|..+|.+... ......+..|+.+.|.|.+.|.
T Consensus 161 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~-~~~~~~~~~g~~v~l~C~~~g~ 239 (308)
T 4fom_A 161 TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVT-GYDGNWFVGRKGVNLKCNADAN 239 (308)
T ss_dssp EECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCB-CCCSCEETTCCSCEEECCEEEE
T ss_pred ceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEc-ccceeeeeccccEEEEEEEecC
Confidence 1235889999999999999999763 232 33345566667766543 2233456788999999999999
Q ss_pred CCC-eEEEEeCCCccc
Q psy5838 191 PEP-YVMWRREDGANL 205 (215)
Q Consensus 191 p~~-~i~W~~~~~~~~ 205 (215)
|.| .+.|++ ++..+
T Consensus 240 P~p~~v~W~k-~~~~~ 254 (308)
T 4fom_A 240 PPPFKSVWSR-LDGQW 254 (308)
T ss_dssp SCEEEEECCB-SSSCC
T ss_pred CCCcEEEEEE-CCeEC
Confidence 988 699999 55443
No 11
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.84 E-value=8.5e-20 Score=147.06 Aligned_cols=80 Identities=18% Similarity=0.395 Sum_probs=65.8
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
.|.|.+++.+|+|.|+|.|.+. ....+.|.|..+|.+..........+.+|+++.|.|.+.|+|.|.+.|++ +|..+
T Consensus 291 ~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l 367 (423)
T 3qs7_E 291 FAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSF 367 (423)
T ss_dssp EEEESSCCTTTCEEEEEEETTE--EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEE
T ss_pred EEEEeecCHHHCEEEEEEEecC--CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE-CCEEC
Confidence 5999999999999999999766 66677889988888765433345668899999999999999999999999 88877
Q ss_pred ccc
Q psy5838 206 SYN 208 (215)
Q Consensus 206 ~~~ 208 (215)
...
T Consensus 368 ~~~ 370 (423)
T 3qs7_E 368 PCE 370 (423)
T ss_dssp ECB
T ss_pred CCc
Confidence 544
No 12
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=134.58 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=116.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
+|.|...+....+.+|++++|.|.+.+.+.+ . +.|++ ++..+. . ....|.|.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~-------~~W~~-~g~~~~--------~-----------~~~~l~i~ 53 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSS-------TQWFL-NGTATQ--------T-----------STPSYRIT 53 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTC-------EEEEE-TTEECS--------C-----------CSSEEEES
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCce-------EEEEE-CCEEee--------c-----------cCCeEEEe
Confidence 4777888888899999999999999887666 5 99999 444321 0 13479999
Q ss_pred cceecCCEEEEEEccC----------------------------------------CCceEEEEccCC--------eEEE
Q psy5838 96 NVQESDRGWYMCQVNT----------------------------------------NPRISLTYNDHR--------SWFL 127 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~----------------------------------------~~~~~~~~~~~~--------~~~l 127 (215)
+++.+|+|.|+|.+.+ .|.+.+.|.... ...|
T Consensus 54 ~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l 133 (262)
T 3rjd_A 54 SASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNL 133 (262)
T ss_dssp SCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCE
T ss_pred cCCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeE
Confidence 9999999999999863 334455553221 3458
Q ss_pred EEcccCCCCCeEEEEEeecCC-CcceeeEEEEEc---CCeEEecCCCcceeeecCCcEEEEEEecccCC-C----eEEEE
Q psy5838 128 NIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV---PPSIIDKDTSTDLVVREQANVTLNCKAQGYPE-P----YVMWR 198 (215)
Q Consensus 128 ~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~----~i~W~ 198 (215)
.|.+++.+|+|.|+|.+.+.. .....+.+.|.. +|.+... ....+.+|+.+.|.|.+.+.|. + .+.|+
T Consensus 134 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~---~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~ 210 (262)
T 3rjd_A 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNAS---VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY 210 (262)
T ss_dssp EESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEES---SCSSEETTCCEEEEEECCCCCC-----EEEEEE
T ss_pred EEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeec---CceeecCCCeEEEEeEcccCCCCCCccEEEEEE
Confidence 899999999999999997643 334445677764 3334332 2445789999999999999875 4 37899
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ ++..+.
T Consensus 211 ~-~~~~~~ 217 (262)
T 3rjd_A 211 M-GSKTLR 217 (262)
T ss_dssp E-TTEEEE
T ss_pred e-CCcEec
Confidence 9 776655
No 13
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.82 E-value=2.4e-19 Score=142.55 Aligned_cols=165 Identities=26% Similarity=0.432 Sum_probs=118.5
Q ss_pred CCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 24 IPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
...+.+.+|+.+.|.|... +.+.+. +.|++++ ..+. .+.+.... ...+.|.|.+++.+|+
T Consensus 109 ~~~~~v~~G~~~~l~C~~~~~~~~~~-------~~W~~~~-~~~~--------~~~~~~~~---~~~~~L~I~~v~~~D~ 169 (384)
T 3kld_A 109 RSTVSVRRGQGMVLLCGPPPHSGELS-------YAWIFNE-YPSY--------QDNRRFVS---QETGNLYIAKVEKSDV 169 (384)
T ss_dssp CCCEEEEETCCEEECCCCCSEESCEE-------EEEEETT-EECC--------CSSSEEEC---TTTCCEEESSCCGGGC
T ss_pred CCceeEEcCCCeEEecCCCCCCCCeE-------EEEEECC-CCCE--------eeccEEEE---cCCCcEEEeecCHHHC
Confidence 4568899999999999754 233444 8999943 3221 12221111 1345799999999999
Q ss_pred EEEEEEccC-----------------------------------------------------CCceEEEEcc--------
Q psy5838 103 GWYMCQVNT-----------------------------------------------------NPRISLTYND-------- 121 (215)
Q Consensus 103 G~Y~C~~~~-----------------------------------------------------~~~~~~~~~~-------- 121 (215)
|.|+|.+.+ .|.+.+.|..
T Consensus 170 G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~ 249 (384)
T 3kld_A 170 GNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR 249 (384)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCT
T ss_pred ceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccc
Confidence 999998753 2334455532
Q ss_pred -----CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeE
Q psy5838 122 -----HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195 (215)
Q Consensus 122 -----~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i 195 (215)
..+..|.|.+++.+|+|.|+|.+.+. +.......+.|..+|.+... ..+..+..|+++.|.|.+.|.|.|.+
T Consensus 250 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~--~~~~~v~~g~~v~l~C~~~g~P~p~i 327 (384)
T 3kld_A 250 KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTY 327 (384)
T ss_dssp TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCEE
T ss_pred cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC--CCceEecCCCCEEEEeECCccCCCeE
Confidence 11346999999999999999999763 44556677888888877653 34566889999999999999999999
Q ss_pred EEEeCCCccccccCC
Q psy5838 196 MWRREDGANLSYNGD 210 (215)
Q Consensus 196 ~W~~~~~~~~~~~~~ 210 (215)
.|++ ||..+....+
T Consensus 328 ~W~k-~g~~l~~~~~ 341 (384)
T 3kld_A 328 RWLK-NGDPLLTRDR 341 (384)
T ss_dssp EEEE-TTEECCCBTT
T ss_pred EEEE-CCEECCCCcc
Confidence 9999 8887755433
No 14
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.82 E-value=1.3e-19 Score=143.82 Aligned_cols=177 Identities=21% Similarity=0.280 Sum_probs=125.6
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.+...+....+.+|++++|.|.+.+.+..... .+.|++++.. +.... ...+.++.+.. .+.|.|.+
T Consensus 103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~----~v~W~~~~~~-~~~~~---~~~~~~~~~~~----~~~L~i~~ 170 (388)
T 2v5m_A 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE----VVSWHTDEEE-NYFPG---AEYDGKYLVLP----SGELHIRE 170 (388)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEE----EEEEEETTCC-EECSS---SCBTTTEEECT----TSCEEESS
T ss_pred ccccccCccceeeecCCcEEEEEECcCCCCCCcc----eEEEEeCCCc-ccccc---cCCCCcEEEcc----CCcEEEec
Confidence 5666666778889999999999999876432111 1999995443 32110 01233443332 34799999
Q ss_pred ceecCC-EEEEEEccC----------------------------------------------------CCceEEEEccC-
Q psy5838 97 VQESDR-GWYMCQVNT----------------------------------------------------NPRISLTYNDH- 122 (215)
Q Consensus 97 ~~~~d~-G~Y~C~~~~----------------------------------------------------~~~~~~~~~~~- 122 (215)
++.+|+ |.|+|.+.+ .|.+.+.|...
T Consensus 171 v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~ 250 (388)
T 2v5m_A 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250 (388)
T ss_dssp CCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEEC
T ss_pred CCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecC
Confidence 999999 999998742 13344555321
Q ss_pred -----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEE
Q psy5838 123 -----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLN 184 (215)
Q Consensus 123 -----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~ 184 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+... +....+.+|+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~ 328 (388)
T 2v5m_A 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFT 328 (388)
T ss_dssp TTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEE--SSEEEECTTSCEEEE
T ss_pred CCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccC--CCcEEecCCCCEEEE
Confidence 1235899999999999999999763 44556677888888776643 345668899999999
Q ss_pred EEecccCCCeEEEEeCCCcccccc
Q psy5838 185 CKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 185 C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
|.+.|.|.+.+.|++ +|..+...
T Consensus 329 C~~~g~p~p~i~W~~-~g~~i~~~ 351 (388)
T 2v5m_A 329 CQYTGNPIKTVSWMK-DGKAIGHS 351 (388)
T ss_dssp EEEEEECCCEEEEEE-TTEECSCC
T ss_pred EEeccccCCeEEEEE-CCEECccC
Confidence 999999999999999 78776543
No 15
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.82 E-value=9.6e-20 Score=141.64 Aligned_cols=178 Identities=20% Similarity=0.368 Sum_probs=114.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEc----CCceEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYN----DHRSWF 91 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 91 (215)
...|...+..+.+.+|++++|.|.+.+. +.+. +.|+|++......+.........|+..... ....+.
T Consensus 3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~-------v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~ 75 (327)
T 2wng_A 3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGP-------IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75 (327)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEESCCCSCCC-------EEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCC
T ss_pred eeEEEcCCCceEEecCCcEEEEEEccCcCCCce-------EEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeE
Confidence 3467777889999999999999999986 6666 999996543211111100011234443322 134568
Q ss_pred EEEccceecCCEEEEEEccC------------------------------------------------C--CceEEEEcc
Q psy5838 92 LNIKNVQESDRGWYMCQVNT------------------------------------------------N--PRISLTYND 121 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~------------------------------------------------~--~~~~~~~~~ 121 (215)
|.|.+++.+|+|.|+|.+.+ . +.+.+.|..
T Consensus 76 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k 155 (327)
T 2wng_A 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFK 155 (327)
T ss_dssp EEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEE
Confidence 99999999999999998642 1 112566621
Q ss_pred CC---------------------eEEEEEcccCCCCCeEEEEEeecCCCc----ceeeEE--EEEcCCeEEecCCCccee
Q psy5838 122 HR---------------------SWFLNIKNVQESDRGWYMCQVNTDPMR----SRQGYL--QVVVPPSIIDKDTSTDLV 174 (215)
Q Consensus 122 ~~---------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~l--~v~~~p~~~~~~~~~~~~ 174 (215)
.. ...|.|.....+|.|.|+|.+.+.... .....+ .+..+|.+..... .
T Consensus 156 ~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~--~-- 231 (327)
T 2wng_A 156 NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ--P-- 231 (327)
T ss_dssp TTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEE--C--
T ss_pred CCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecC--C--
Confidence 10 123566666666689999999764322 112222 3445676654311 1
Q ss_pred eecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
+.+|+.+.|.|.+.|. |++ .+.|++ ||..+.
T Consensus 232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~ 264 (327)
T 2wng_A 232 VRAENQVNVTCQVRKFYPQRLQLTWLE-NGNVSR 264 (327)
T ss_dssp CSSTTCCEEEEEEEEEBSSCEEEEEEE-TTEEEE
T ss_pred cCCCCcEEEEEEEccccCCCcEEEEEE-CCeEcc
Confidence 6789999999999995 444 799999 787664
No 16
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.82 E-value=6.7e-20 Score=144.54 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=117.3
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeecee-----eeCCceEEEEc--CCceEEEEEccce
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI-----TQNPRISLTYN--DHRSWFLNIKNVQ 98 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~l~i~~~~ 98 (215)
.+.+.+|++++|.|.+.+.+.+. +.|+|++...+........ ....|+.+..+ ....+.|.|.+++
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 75 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSIQ-------FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK 75 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSCC-------EEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCC
T ss_pred eEEEeCCCeEEEEEEecCCCceE-------EEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCC
Confidence 46788999999999998777777 9999965432322211111 11234433221 1235689999999
Q ss_pred ecCCEEEEEEccC----------------------------------CCceEEEEccC------CeEEEEEcccCCCCCe
Q psy5838 99 ESDRGWYMCQVNT----------------------------------NPRISLTYNDH------RSWFLNIKNVQESDRG 138 (215)
Q Consensus 99 ~~d~G~Y~C~~~~----------------------------------~~~~~~~~~~~------~~~~l~i~~~~~~d~G 138 (215)
.+|+|.|+|.+.+ .|.+.+.|... ....|.|.+++.+|+|
T Consensus 76 ~~D~G~Y~C~~~n~~~~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G 155 (363)
T 1wio_A 76 IEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG 155 (363)
T ss_dssp GGGCEEEEEEETTEEEEEEEEEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEESSEEEECSBCGGGCE
T ss_pred HHHCEEEEEEEEECCCcEEEEEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccceEEEEeeCChhcCC
Confidence 9999999998763 45566677443 2356999999999999
Q ss_pred EEEEEeecCC-CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-----cCCCeEEEEeCCCccccc
Q psy5838 139 WYMCQVNTDP-MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-----YPEPYVMWRREDGANLSY 207 (215)
Q Consensus 139 ~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~~ 207 (215)
.|+|.+.+.. .....+.+.|..+|... ....+.+|+.+.|.|.+.+ +|.|.+.|++ +|..+..
T Consensus 156 ~Y~C~a~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~-~g~~~~~ 224 (363)
T 1wio_A 156 TWTCTVLQNQKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA-ERASSSK 224 (363)
T ss_dssp ECEEEEEETTEEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEE-SSCCCCC
T ss_pred EEEEEEecCCCeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEecccccCCCceeEEEec-CCCCccc
Confidence 9999997542 22333456665554422 3455789999999998877 7788999999 7766544
No 17
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.82 E-value=3.2e-19 Score=141.84 Aligned_cols=171 Identities=24% Similarity=0.365 Sum_probs=114.8
Q ss_pred CCCcccCCCCceEE---EeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 16 LMPHFAEPIPNVTV---TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 16 ~~p~~~~~~~~~~~---~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
..|.|...|....+ .+|+++.|.|.+.+.|.+. +.|+| ++..+.. ..+.++... .+.|
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~-------i~W~k-~g~~l~~------~~~~~~~~~-----~g~l 64 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPH-------IRWKL-NGTDVDI------GMDFRYSVV-----DGSL 64 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCE-------EEEEE-TTEECCC----------CEEEE-----TTEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCE-------EEEEE-CCEECcC------CCCccEEEE-----CCEE
Confidence 46888888887776 4789999999999998887 99999 4544311 112233321 2367
Q ss_pred EEccc-eecCCEEEEEEccCC---------------------------------------------CceEEEEcc-----
Q psy5838 93 NIKNV-QESDRGWYMCQVNTN---------------------------------------------PRISLTYND----- 121 (215)
Q Consensus 93 ~i~~~-~~~d~G~Y~C~~~~~---------------------------------------------~~~~~~~~~----- 121 (215)
.|.+. ..+|+|.|+|.|.+. +.+.+.|..
T Consensus 65 ~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~ 144 (384)
T 3kld_A 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144 (384)
T ss_dssp EEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEEC
T ss_pred EEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCC
Confidence 77765 789999999998631 124555621
Q ss_pred ---------CCeEEEEEcccCCCCCeEEEEEeecCCCcce----eeEEEEE-------cCCeEEecCCCcceeeecCCcE
Q psy5838 122 ---------HRSWFLNIKNVQESDRGWYMCQVNTDPMRSR----QGYLQVV-------VPPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 122 ---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~ 181 (215)
.....|.|.+++.+|+|.|+|.+.+...... ...+.+. .+|.+... .+....+.+|+++
T Consensus 145 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~-~~~~~~~~~G~~v 223 (384)
T 3kld_A 145 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQ-FPETVPAEKGTTV 223 (384)
T ss_dssp CCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEE-CCSEEEEETTSCE
T ss_pred EeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeec-CCCceEecCCCcE
Confidence 1123489999999999999999976432211 1112221 12333322 2345568899999
Q ss_pred EEEEEecccCCCeEEEEeCCCcccc
Q psy5838 182 TLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 182 ~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.|.|.+.|.|.|.+.|++.++..+.
T Consensus 224 ~l~C~~~g~P~p~i~W~k~~~~~~~ 248 (384)
T 3kld_A 224 KLECFALGNPVPTILWRRADGKPIA 248 (384)
T ss_dssp EEEEEEEEESCCEEEEEETTCCCCC
T ss_pred EEEEEEeecCCCcEEEEeCCCcccc
Confidence 9999999999999999996665543
No 18
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.81 E-value=1.5e-18 Score=143.08 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=126.0
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.+...+....+.+|++++|.|.+.+++.+. +.|++.++..+ ..+.++.... .+.|.|.++
T Consensus 115 ~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~-------v~W~~~~g~~l--------~~~~~~~~~~----~~~L~i~~~ 175 (524)
T 2ec8_A 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTN-------YSLKGCQGKPL--------PKDLRFIPDP----KAGIMIKSV 175 (524)
T ss_dssp SCSBCCCCCCCEETTSCEEECCCBSCCCCSC-------EEEECSSSCCC--------CSSCEEEEET----TTEEEEESC
T ss_pred CcccccccceEEEcCCeEEEECcCCCCccce-------EEEEccCCcCc--------CCCCceeECC----CccEEEecc
Confidence 3444566778899999999999999876566 99998666544 1233443332 237999999
Q ss_pred eecCCE-EEEEEccC-----------------------------------------------CCce-EEEEcc--CC---
Q psy5838 98 QESDRG-WYMCQVNT-----------------------------------------------NPRI-SLTYND--HR--- 123 (215)
Q Consensus 98 ~~~d~G-~Y~C~~~~-----------------------------------------------~~~~-~~~~~~--~~--- 123 (215)
+.+|+| .|+|.+.+ .|.+ .+.|.. ..
T Consensus 176 ~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~ 255 (524)
T 2ec8_A 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 255 (524)
T ss_dssp CGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCC
T ss_pred chhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcc
Confidence 999999 99999762 1222 255521 11
Q ss_pred ----------------eEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCC-CcceeeecCCcEEEEE
Q psy5838 124 ----------------SWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDT-STDLVVREQANVTLNC 185 (215)
Q Consensus 124 ----------------~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~~~g~~~~l~C 185 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.+..... .....+.+|+.+.|.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C 335 (524)
T 2ec8_A 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIV 335 (524)
T ss_dssp CEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEE
T ss_pred ccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEE
Confidence 35699999999999999999976 34445567788988888765432 2456789999999999
Q ss_pred EecccCCCe-EEEEeCCCcccccc
Q psy5838 186 KAQGYPEPY-VMWRREDGANLSYN 208 (215)
Q Consensus 186 ~~~~~p~~~-i~W~~~~~~~~~~~ 208 (215)
.+.|.|.|. +.|++ +|..+...
T Consensus 336 ~~~g~P~p~~v~W~k-~g~~~~~~ 358 (524)
T 2ec8_A 336 EYEAFPKPEHQQWIY-MNRTFTDK 358 (524)
T ss_dssp EEEEESCCCEEEEES-SSCBCSSS
T ss_pred EEeecCCCcEEEEEE-CCeeccCC
Confidence 999999998 99999 77766544
No 19
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.81 E-value=3.5e-19 Score=141.85 Aligned_cols=163 Identities=26% Similarity=0.403 Sum_probs=120.3
Q ss_pred CCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecC-
Q psy5838 24 IPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD- 101 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d- 101 (215)
.....+.+|++++|.|.+ .+.+.+. +.|++++...+ ..+.++... ..+.|.|.++..+|
T Consensus 123 ~~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~~~~~~~~--------~~~~~~~~~----~~~~l~i~~v~~~d~ 183 (404)
T 3p3y_A 123 LDPVVVQEGAPLTLQCNPPPGLPSPV-------IFWMSSSMEPI--------TQDKRVSQG----HNGDLYFSNVMLQDM 183 (404)
T ss_dssp CCCEEEETTSCEEECCCCCCCSSCCE-------EEEECTTSCBC--------CCCSSEEEC----TTSCEEESSCCSGGG
T ss_pred CCCeEEccCCcEEEEeCCCCCCCCCe-------EEEeCCCcccc--------CCCCcEEEc----CCCcEEEEeeeeccC
Confidence 456888999999999998 6666666 99999654432 122333332 23478999999999
Q ss_pred CEEEEEEccC-------------------------------------------------------CCceEEEEccC----
Q psy5838 102 RGWYMCQVNT-------------------------------------------------------NPRISLTYNDH---- 122 (215)
Q Consensus 102 ~G~Y~C~~~~-------------------------------------------------------~~~~~~~~~~~---- 122 (215)
+|.|+|.+.+ .|.+.+.|...
T Consensus 184 ~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~ 263 (404)
T 3p3y_A 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263 (404)
T ss_dssp SSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCC
T ss_pred CcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEEC
Confidence 5999998752 23345555321
Q ss_pred ---------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCC
Q psy5838 123 ---------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPE 192 (215)
Q Consensus 123 ---------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 192 (215)
.+..|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+... +....+.+|+.+.|.|.+.|.|.
T Consensus 264 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~ 341 (404)
T 3p3y_A 264 PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE--PKNLILAPGEDGRLVCRANGNPK 341 (404)
T ss_dssp CTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESC
T ss_pred CCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeecc--CCcceeecCCcEEEEEEccccCC
Confidence 1346999999999999999999763 45566677888888877653 44566889999999999999999
Q ss_pred CeEEEEeCCCcccccc
Q psy5838 193 PYVMWRREDGANLSYN 208 (215)
Q Consensus 193 ~~i~W~~~~~~~~~~~ 208 (215)
+.+.|++ +|..+...
T Consensus 342 p~v~W~~-~g~~~~~~ 356 (404)
T 3p3y_A 342 PTVQWMV-NGEPLQSA 356 (404)
T ss_dssp CEEEEEE-TTEEGGGS
T ss_pred CceEEEE-CCEecCCC
Confidence 9999999 77776543
No 20
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.81 E-value=1.3e-19 Score=140.91 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=119.3
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecCCcc--EEEeee-c-----eeeeCCceEEEEcCC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQT--ILSIHH-N-----VITQNPRISLTYNDH 87 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~~~~--~~~~~~-~-----~~~~~~~~~~~~~~~ 87 (215)
.+.+...+..+.+.+|++++|.|.+.+.... ... .+.|++++... .+.... . .....+|+.+.....
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~----~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~ 89 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKIT----QVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSF 89 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEE----EEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSS
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceE----EEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCC
Confidence 3445566778999999999999999875211 112 18999943211 111110 0 001235665543334
Q ss_pred ceEEEEEccceecCCEEEEEEccC-------------------------------------------------CCceEEE
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNT-------------------------------------------------NPRISLT 118 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~-------------------------------------------------~~~~~~~ 118 (215)
..++|.|.+++.+|+|.|+|.+.. .|.+.+.
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~ 169 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS 169 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence 567899999999999999998430 1333444
Q ss_pred EccC------------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCC
Q psy5838 119 YNDH------------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179 (215)
Q Consensus 119 ~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~ 179 (215)
|... ....|.|..+..+|+|.|+|.+.+. +.....+.|.|..+|.+... ......+.+|+
T Consensus 170 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~-~~~~~~~~~g~ 248 (331)
T 3u83_A 170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE-GFDGNWYLQRM 248 (331)
T ss_dssp EEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEE-CCCSCCBTTCC
T ss_pred EEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEe-cCCCceEeCCC
Confidence 5320 0234778888999999999999764 34455667888888876643 23344578899
Q ss_pred cEEEEEEecccCCCe-EEEEeCCCcccc
Q psy5838 180 NVTLNCKAQGYPEPY-VMWRREDGANLS 206 (215)
Q Consensus 180 ~~~l~C~~~~~p~~~-i~W~~~~~~~~~ 206 (215)
++.|.|.+.+.|.|. +.|++ ++..+.
T Consensus 249 ~~~l~C~~~g~p~p~~i~W~~-~~~~~~ 275 (331)
T 3u83_A 249 DVKLTCKADANPPATEYHWTT-LNGSLP 275 (331)
T ss_dssp CEEEEEEEEEESCCCEEEEEE-TTBSCC
T ss_pred eEEEEEeCcCCCCCCEEEEEE-CCCccc
Confidence 999999999999998 99999 666553
No 21
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.5e-18 Score=132.59 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=118.4
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|...+....+.+|++++|.|.+.+ . +.|++++.... . ... ....|.|
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~-------i~W~~~~~~~~-------------~-~~~---~~~~L~i 61 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----F-------VRWTFKTYFNE-------------M-VEN---KKNEWIQ 61 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----E-------EEEEEECSSSC-------------E-EEE---CSSEEEE
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----c-------EEEecCCccee-------------e-ecC---CCceEEE
Confidence 45688888888999999999999999986 4 99999654320 0 011 1158999
Q ss_pred ccceecCCEEEEEEccC--------------------------------------CCc-eEEEEc-cC------------
Q psy5838 95 KNVQESDRGWYMCQVNT--------------------------------------NPR-ISLTYN-DH------------ 122 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~--------------------------------------~~~-~~~~~~-~~------------ 122 (215)
.+++.+|+|.|+|.+.+ .|. +.+.|. ..
T Consensus 62 ~~~~~~d~G~Y~C~~~ng~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~ 141 (290)
T 2o26_X 62 EKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP 141 (290)
T ss_dssp TTCCGGGCEEEEEEESSSCEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEE
T ss_pred eccCHHhCeEEEEEeeCCccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceee
Confidence 99999999999998742 355 778882 11
Q ss_pred -CeEEEEEcccCCCCCe-EEEEEeecCCCc--ceeeEEEEE----cCCeEEecCCCcceeeecCCcEEEEEEecccCCCe
Q psy5838 123 -RSWFLNIKNVQESDRG-WYMCQVNTDPMR--SRQGYLQVV----VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194 (215)
Q Consensus 123 -~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 194 (215)
.+..|.|.+++.+|+| .|+|.+.+.... +..+.+.|. .+|.+... +....+.+|+.+.|.|.+.+.|.|.
T Consensus 142 ~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~--~~~~~v~~G~~v~l~C~~~g~p~p~ 219 (290)
T 2o26_X 142 NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVP--ETSHLLKKGDTFTVVCTIKDVSTSV 219 (290)
T ss_dssp ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECS--CSBCCCCTTCCEEEEEEEEESSTTC
T ss_pred CCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccC--CCcceEecCCcEEEEEEEecCCcce
Confidence 1236899999999999 999999765333 334667776 56666543 3344688999999999999999986
Q ss_pred -EEEEeCCCcc
Q psy5838 195 -VMWRREDGAN 204 (215)
Q Consensus 195 -i~W~~~~~~~ 204 (215)
+.|++ ++..
T Consensus 220 ~i~W~~-~~~~ 229 (290)
T 2o26_X 220 NSMWLK-MNPQ 229 (290)
T ss_dssp EEEEEE-ESSS
T ss_pred eEEEec-CCCC
Confidence 99999 5555
No 22
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.80 E-value=1.7e-18 Score=137.95 Aligned_cols=175 Identities=20% Similarity=0.391 Sum_probs=122.4
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
......|...|..+.+.+|++++|.|.+.+ .+.+. +.|+| ++..+.. ....+..... .+.|
T Consensus 18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~-------v~W~k-~g~~~~~------~~~~~~~~~~----~~~l 79 (403)
T 3laf_A 18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPV-------IKWKK-DGLILAL------GMDDRKQQLP----NGSL 79 (403)
T ss_dssp -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCE-------EEEEE-TTEECCT------TSCTTEEECT----TSCE
T ss_pred CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCce-------EEEEE-CCEECcc------CCcccEEEec----CCcE
Confidence 444667788889999999999999999986 45555 99999 4443310 1123333322 2367
Q ss_pred EEccc-----eecCCEEEEEEccC--------------------------------------------CCceEEEEccC-
Q psy5838 93 NIKNV-----QESDRGWYMCQVNT--------------------------------------------NPRISLTYNDH- 122 (215)
Q Consensus 93 ~i~~~-----~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~- 122 (215)
.|.++ +.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 80 ~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~ 159 (403)
T 3laf_A 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQ 159 (403)
T ss_dssp EECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESS
T ss_pred EEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECC
Confidence 77777 77899999999862 34456666321
Q ss_pred ---------------CeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEE----ecCCCcceeeecCCcE
Q psy5838 123 ---------------RSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSII----DKDTSTDLVVREQANV 181 (215)
Q Consensus 123 ---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~----~~~~~~~~~~~~g~~~ 181 (215)
....|.|.+++.+|+|.|+|.+.+.. .......+.|..+|... ....+....+.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~ 239 (403)
T 3laf_A 160 QDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239 (403)
T ss_dssp SBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCE
T ss_pred EeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcE
Confidence 12358999999999999999997632 23345677777665321 1123445668899999
Q ss_pred EEEEEecccCCCeEEEEeCCCccccc
Q psy5838 182 TLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 182 ~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
.|.|.+.+.|.+.+.|++ ++..+..
T Consensus 240 ~l~C~~~~~p~~~~~W~~-~~~~~~~ 264 (403)
T 3laf_A 240 VLECCVSGYPPPSFTWLR-GEEVIQL 264 (403)
T ss_dssp EECCEEEEESCCEEEEEE-TTEECCC
T ss_pred EEEEEcCCCCCCeEEEEE-CCeeccC
Confidence 999999999999999999 7766654
No 23
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.79 E-value=1.3e-18 Score=136.29 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=103.1
Q ss_pred CCCceEEEeCCcEEEEEEeeccCC-----------ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKG-----------FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~-----------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
....+.+.+|+++.|.|.+.+.+. +. +.|++++................++.. ..+.
T Consensus 13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~-------i~W~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 80 (349)
T 4dep_C 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLT-------LIWYWTRQDRDLEEPINFRLPENRISK-----EKDV 80 (349)
T ss_dssp CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCE-------EEEEEEESSCCCEEECCCCCGGGCEEE-----ETTE
T ss_pred eeeeEEEecCCeEEEEccccccccccccccccCCCce-------EEEEECCCCCcccccccccccCceEee-----cCCE
Confidence 356789999999999999986543 55 999996532100000000001222222 1238
Q ss_pred EEEccceecCCEEEEEEccC---------------------------------------------------CCceEEEEc
Q psy5838 92 LNIKNVQESDRGWYMCQVNT---------------------------------------------------NPRISLTYN 120 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~---------------------------------------------------~~~~~~~~~ 120 (215)
|.|.+++.+|+|.|+|.+.+ .|.+.+.|.
T Consensus 81 L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~ 160 (349)
T 4dep_C 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY 160 (349)
T ss_dssp EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEE
T ss_pred EEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEe
Confidence 99999999999999998763 245566663
Q ss_pred cCC------------eEEEEEcccCCCCCeEEEEEeecC--CCc---ceeeEEEEEc------CCeEEecCCCcceeeec
Q psy5838 121 DHR------------SWFLNIKNVQESDRGWYMCQVNTD--PMR---SRQGYLQVVV------PPSIIDKDTSTDLVVRE 177 (215)
Q Consensus 121 ~~~------------~~~l~i~~~~~~d~G~Y~C~~~~~--~~~---~~~~~l~v~~------~p~~~~~~~~~~~~~~~ 177 (215)
... ...|.|.+++.+|+|.|+|.+.+. +.. ...+.+.|.. +|.+..........+.+
T Consensus 161 k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~ 240 (349)
T 4dep_C 161 MGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEP 240 (349)
T ss_dssp ETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC------------
T ss_pred eCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEec
Confidence 211 135999999999999999999763 332 4455566665 45444321111125789
Q ss_pred CCcEEEEEEec----ccCCCeEEEEeCCCccccc
Q psy5838 178 QANVTLNCKAQ----GYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 178 g~~~~l~C~~~----~~p~~~i~W~~~~~~~~~~ 207 (215)
|+.+.|.|.+. +.|.+.+.|++ +|..+..
T Consensus 241 G~~v~l~C~~~~~~~g~p~p~v~W~~-~g~~l~~ 273 (349)
T 4dep_C 241 GEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDD 273 (349)
T ss_dssp ----CCCEEEEECCCTTCCCEEEEES-SCC----
T ss_pred CCcEEEEEEEEEccCCCCCCEEEEEE-CCEEccc
Confidence 99999999998 57889999999 7776654
No 24
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.79 E-value=1.9e-18 Score=136.91 Aligned_cols=166 Identities=24% Similarity=0.418 Sum_probs=118.9
Q ss_pred CCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 24 IPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
+....+.+|++++|.|... +.+.+. +.|++++..... ..+.+.... ...+.|.|.+++.+|+
T Consensus 108 ~~~~~v~~G~~v~l~C~~~~~~p~~~-------i~W~~~~~~~~~-------~~~~~~~~~---~~~~~L~i~~~~~~d~ 170 (382)
T 1cs6_A 108 RDPVKITEGWGVMFTCSPPPHYPALS-------YRWLLNEFPNFI-------PADGRRFVS---QTTGNLYIAKTEASDL 170 (382)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCE-------EEEEESSTTCBC-------CCCSSEEEC---TTTCCEEESSCCGGGC
T ss_pred CCceEEecCCcEEEEeCCCCCCCCcE-------EEEEECCCcccc-------ccCceEEEe---cCceEEEEEeeCcccC
Confidence 5678899999999999964 445555 999995433211 112222221 1335799999999999
Q ss_pred EEEEEEccC------------------------------------------------------CCceEEEEcc-------
Q psy5838 103 GWYMCQVNT------------------------------------------------------NPRISLTYND------- 121 (215)
Q Consensus 103 G~Y~C~~~~------------------------------------------------------~~~~~~~~~~------- 121 (215)
|.|+|.+.+ .|.+.+.|..
T Consensus 171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~ 250 (382)
T 1cs6_A 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS 250 (382)
T ss_dssp EEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC
T ss_pred eeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc
Confidence 999998642 1223344421
Q ss_pred ---CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEE
Q psy5838 122 ---HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197 (215)
Q Consensus 122 ---~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W 197 (215)
.....|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+... .....+..|+.+.|.|.+.|.|.+.+.|
T Consensus 251 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~v~W 328 (382)
T 1cs6_A 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGKPRPAVRW 328 (382)
T ss_dssp CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEE
T ss_pred EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccC--CCccEEcCCCeEEEEEEeeeecCCEEEE
Confidence 12456899999999999999999663 44455667888888877653 3455688999999999999999999999
Q ss_pred EeCCCccccccC
Q psy5838 198 RREDGANLSYNG 209 (215)
Q Consensus 198 ~~~~~~~~~~~~ 209 (215)
++ +|..+....
T Consensus 329 ~~-~g~~~~~~~ 339 (382)
T 1cs6_A 329 LR-DGQPLASQN 339 (382)
T ss_dssp EE-TTEECCCCS
T ss_pred EE-CCEECCCCc
Confidence 99 787776543
No 25
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.79 E-value=3.8e-18 Score=143.88 Aligned_cols=156 Identities=22% Similarity=0.316 Sum_probs=115.9
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD 101 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 101 (215)
..+....+.+|+.+.|.|.+.+.+.+. +.|+++ +..+. ....|.|.+++.+|
T Consensus 386 ~~~~~~~~~~g~~~~l~C~~~g~p~~~-------i~W~~~-g~~~~--------------------~~~~L~i~~~~~~d 437 (642)
T 1e07_A 386 ISPSYTYYRPGVNLSLSCHAASNPPAQ-------YSWLID-GNIQQ--------------------HTQELFISNITEKN 437 (642)
T ss_pred ecCCceEecCCCcEEEEEEcCccCCCe-------EEEEEC-CEEcC--------------------CCceEEEccCChhh
Confidence 345567788999999999999888777 999994 43321 12368899999999
Q ss_pred CEEEEEEccC---------------------------------------------CCceEEEEcc--------------C
Q psy5838 102 RGWYMCQVNT---------------------------------------------NPRISLTYND--------------H 122 (215)
Q Consensus 102 ~G~Y~C~~~~---------------------------------------------~~~~~~~~~~--------------~ 122 (215)
+|.|+|.|.+ .|.+.+.|.. .
T Consensus 438 ~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~~~ 517 (642)
T 1e07_A 438 SGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSN 517 (642)
T ss_pred CeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEEcC
Confidence 9999998764 1233444521 1
Q ss_pred CeEEEEEcccCCCCCeEEEEEeecC-CC-cceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNTD-PM-RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
.+..|.|.+++.+|+|.|+|.+.+. +. .+..+.|.|..+|..... .+....+..|+.+.|.|.+.|.|.+.+.|++
T Consensus 518 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~- 595 (642)
T 1e07_A 518 GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII-SPPDSSYLSGANLNLSCHSASNPSPQYSWRI- 595 (642)
T ss_pred CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCccee-cCCceeEEcCCcEEEEEEeccCCCCeEEEEE-
Confidence 1346899999999999999999764 32 234578888876653332 2345678899999999999999999999999
Q ss_pred CCccccc
Q psy5838 201 DGANLSY 207 (215)
Q Consensus 201 ~~~~~~~ 207 (215)
||..+..
T Consensus 596 ~g~~i~~ 602 (642)
T 1e07_A 596 NGIPQQH 602 (642)
T ss_pred CCEECcc
Confidence 7877653
No 26
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=141.74 Aligned_cols=81 Identities=17% Similarity=0.386 Sum_probs=64.1
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
.|.|.+++.+|+|.|+|.+.+. ....+.|.|..+|.+..........+.+|+.+.|.|.+.|.|.|.+.|++ +|..+
T Consensus 291 ~L~I~~v~~~DsG~Y~C~a~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~g~~l 367 (527)
T 3qs9_E 291 FAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF-SRKSF 367 (527)
T ss_dssp EEEESSCCGGGCEEEEEEETTE--EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE-TTEEE
T ss_pred EEEEccCCcccCeEEEEEEEeC--CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEEC
Confidence 3899999999999999999765 56667788888887665433344567899999999999999999999999 88877
Q ss_pred cccC
Q psy5838 206 SYNG 209 (215)
Q Consensus 206 ~~~~ 209 (215)
....
T Consensus 368 ~~~~ 371 (527)
T 3qs9_E 368 PCEQ 371 (527)
T ss_dssp ECBC
T ss_pred cCCc
Confidence 5443
No 27
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.78 E-value=2.8e-18 Score=130.75 Aligned_cols=163 Identities=20% Similarity=0.259 Sum_probs=115.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
++|.+...+..+.+.+|++++|.|.+.+ . +.|+++..... ... .......|.|.
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~-------v~W~~~~~~~~--------------~~~-~~~~~~~L~i~ 56 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----S-------VEWDGPISPYW--------------TLD-PESPGSTLTTR 56 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----C-------CEEECSCSSSS--------------EEC-CCSSCCEEEES
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----c-------EEEccCCCceE--------------EEe-ccCCccEEEEe
Confidence 4577777778899999999999999875 3 88997432211 111 11244689999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCc-eEEEEcc----------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPR-ISLTYND---------- 121 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~-~~~~~~~---------- 121 (215)
+++.+|+|.|+|.+.+ .+. ..+.|..
T Consensus 57 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~ 136 (289)
T 3ejj_X 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT 136 (289)
T ss_dssp SCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC
T ss_pred eeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc
Confidence 9999999999999763 111 1144421
Q ss_pred ----CCeEEEEEcccCCCCCeEEEEEeecC--CCcceeeEEEEE----cCCeEEecCCCcceeeecCCcEEEEEEecc-c
Q psy5838 122 ----HRSWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVV----VPPSIIDKDTSTDLVVREQANVTLNCKAQG-Y 190 (215)
Q Consensus 122 ----~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~ 190 (215)
..+..|.|.+++.+|+|.|+|.+.+. +.....+.+.|. .+|.+... +....+.+|+.+.|.|.+.+ .
T Consensus 137 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~~~~~~ 214 (289)
T 3ejj_X 137 VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLE--PSKLVRIRGEAAQIVCSATNAE 214 (289)
T ss_dssp CEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEE--SSSEECCSSSCEEEEEEEEESS
T ss_pred cEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEec--CCceEEEeCCcEEEEEEeCCCC
Confidence 01235899999999999999999732 334556678887 46666553 33445678999999999988 7
Q ss_pred CCCeEEEEeCCCccccc
Q psy5838 191 PEPYVMWRREDGANLSY 207 (215)
Q Consensus 191 p~~~i~W~~~~~~~~~~ 207 (215)
|.+.+.|++ ++..+..
T Consensus 215 p~~~i~W~~-~~~~~~~ 230 (289)
T 3ejj_X 215 VGFNVILKR-GDTKLEI 230 (289)
T ss_dssp SCCEEEEEE-TTEECCC
T ss_pred CceEEEEEE-CCEEeec
Confidence 889999999 6766543
No 28
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.6e-17 Score=126.59 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=113.6
Q ss_pred CceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 25 PNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
..+.+.+|+++.|.|.+. +.+.+. +.|+|+ +..+ ....++.+...+ ....|.|.+++.+|+|
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~-------v~W~k~-~~~i--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G 71 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSE-------FSWSKD-YVST--------EDSPRLEVESKG-NKTKMTFKDLGMDDLG 71 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCC-------EEEEET-TEEC--------TTCTTEEEEEET-TEEEEEESSCCGGGCE
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcE-------EEEEEC-CEEC--------CCCCCEEEEEeC-CEEEEEECcCCccCCE
Confidence 357778999999999987 345565 999994 4432 224566555433 4569999999999999
Q ss_pred EEEEEccC-------------------------------------------------------CCceEEEEcc-------
Q psy5838 104 WYMCQVNT-------------------------------------------------------NPRISLTYND------- 121 (215)
Q Consensus 104 ~Y~C~~~~-------------------------------------------------------~~~~~~~~~~------- 121 (215)
.|+|.+.+ .|.+.+.|..
T Consensus 72 ~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~ 151 (312)
T 2y23_A 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE 151 (312)
T ss_dssp EEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECS
T ss_pred EEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECee
Confidence 99998763 1334444421
Q ss_pred -----------CCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEE---------------------cCCeEEecCC
Q psy5838 122 -----------HRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV---------------------VPPSIIDKDT 169 (215)
Q Consensus 122 -----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~ 169 (215)
.....|.|.+++.+|+|.|+|.+.+ +.......+.+. .+|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--- 227 (312)
T 2y23_A 152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE--- 227 (312)
T ss_dssp SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEES-SSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE---
T ss_pred CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEe-CCceEEEEEEEcchhhhhhcccccccccchhhccCCceee---
Confidence 1123399999999999999999964 233333333331 1244332
Q ss_pred CcceeeecCCcEEEEEEecccCCC-eEEEEeCCCccccccCC
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEP-YVMWRREDGANLSYNGD 210 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~ 210 (215)
.....+.+|+.+.|.|.+.+.|.+ .+.|++ +|..+..+.+
T Consensus 228 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~~~~~ 268 (312)
T 2y23_A 228 YLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEK 268 (312)
T ss_dssp EEEEEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEEEECC
T ss_pred cceEEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECCCCCc
Confidence 123568899999999999999888 999999 8877764433
No 29
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.78 E-value=4.3e-18 Score=143.54 Aligned_cols=175 Identities=20% Similarity=0.260 Sum_probs=118.9
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc----EEEeeec--eee----eCCceEEEEcCCce
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT----ILSIHHN--VIT----QNPRISLTYNDHRS 89 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~----~~~~~~~--~~~----~~~~~~~~~~~~~~ 89 (215)
|...+..+.+.+|++++|.|...+.+... +.|+|++... +...... ... ..+|..+. .+
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~----~~ 70 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFG-------YSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY----PN 70 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceE-------EEEECCcccCCcceEEEEEccccccccCccccCceeec----cC
Confidence 45566788899999999999976554444 9999943221 1111000 000 12233332 24
Q ss_pred EEEEEccceecCCEEEEEEccC--------------------------------------------CCceEEEEcc----
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNT--------------------------------------------NPRISLTYND---- 121 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~---- 121 (215)
++|.|.+++.+|+|.|+|.+.+ .|.+.+.|..
T Consensus 71 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~p~~~v~W~~~g~~ 150 (642)
T 1e07_A 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQS 150 (642)
T ss_pred CcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCCCCeeEEEEECCeE
Confidence 5899999999999999998652 1344555522
Q ss_pred ----------CCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc
Q psy5838 122 ----------HRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG 189 (215)
Q Consensus 122 ----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~ 189 (215)
..+..|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|..+|..... .+....+.+|+.+.|.|.+.+
T Consensus 151 l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~-~~~~~~~~~G~~~~l~C~~~g 229 (642)
T 1e07_A 151 LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI-SPLNTSYRSGENLNLSCHAAS 229 (642)
T ss_pred CCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEE-ecCCcccccCCEEEEEEEcCC
Confidence 113468999999999999999997632 2345577888766543322 233456789999999999999
Q ss_pred cCCCeEEEEeCCCccccc
Q psy5838 190 YPEPYVMWRREDGANLSY 207 (215)
Q Consensus 190 ~p~~~i~W~~~~~~~~~~ 207 (215)
.|.+.+.|++ +|..+..
T Consensus 230 ~p~~~i~W~~-~g~~i~~ 246 (642)
T 1e07_A 230 NPPAQYSWFV-NGTFQQS 246 (642)
T ss_pred CCCcEEEEEE-CCeEccc
Confidence 9999999999 7776643
No 30
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.78 E-value=2.5e-18 Score=136.55 Aligned_cols=172 Identities=17% Similarity=0.281 Sum_probs=117.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
.+|.|...+..+.+.+|++++|.|.+.+ .+.+. +.|+|+ +..+.. ...++... ...+.|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~k~-g~~~~~-------~~~~~~~~---~~~~~L~i 66 (395)
T 1bih_A 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVK-------YSWKKD-GKSYNW-------QEHNAALR---KDEGSLVF 66 (395)
T ss_dssp CCCEECCCCSEEEEETTSCEEECCCEESCCSSCE-------EEEEES-SSBCCT-------TTTTEEEC---TTSCCEEE
T ss_pred CCCEeecCCCceEEeCCCEEEEEEEEecCCCCce-------EEEEEC-CcCccc-------ccceEEEe---cCCceEEE
Confidence 4788999999999999999999999998 66666 999994 443311 11122111 13458999
Q ss_pred ccceecCCEEEEEEccC--------------------------------------------CCceEEEEccC--------
Q psy5838 95 KNVQESDRGWYMCQVNT--------------------------------------------NPRISLTYNDH-------- 122 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~-------- 122 (215)
.+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 67 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 146 (395)
T 1bih_A 67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA 146 (395)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG
T ss_pred ecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccc
Confidence 99999999999998763 23345555321
Q ss_pred ------------CeEEEEEcccCCCCCe---EEEEEeecCCCc-ceeeEEEEE---cCC-------eEEecCCCcceeee
Q psy5838 123 ------------RSWFLNIKNVQESDRG---WYMCQVNTDPMR-SRQGYLQVV---VPP-------SIIDKDTSTDLVVR 176 (215)
Q Consensus 123 ------------~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~-~~~~~l~v~---~~p-------~~~~~~~~~~~~~~ 176 (215)
.+..|.|.+++.+|+| .|+|.+.+.... ......... ..+ ..... .+....+.
T Consensus 147 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~ 225 (395)
T 1bih_A 147 DVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAK 225 (395)
T ss_dssp CCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEE
T ss_pred ccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEE
Confidence 1234889999999999 999999764322 222221111 110 01111 13455688
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
+|+.+.|.|.+.+.|.+.+.|++ +|..+..
T Consensus 226 ~G~~v~l~C~~~g~p~~~i~W~~-~g~~~~~ 255 (395)
T 1bih_A 226 AGDVTMIYCMYGSNPMGYPNYFK-NGKDVNG 255 (395)
T ss_dssp TTSCEEEEEEEECSSCCCCEEEE-TTEECCC
T ss_pred CCCcEEEEEEeccCCCCeEEEEE-CCEEcCC
Confidence 99999999999999999999999 7776654
No 31
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=138.73 Aligned_cols=177 Identities=16% Similarity=0.281 Sum_probs=120.3
Q ss_pred ccccccCCCcccCCCCceEEEeCCcEEEEEEee-------ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEE
Q psy5838 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVD-------NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82 (215)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~-------~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 82 (215)
+.......|.|...+....+.+|+++.|.|.+. +.+.+. +.|++++....+.. ....++..
T Consensus 11 ~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~-------v~W~k~~~~~~~~~-----~~~~~~~~ 78 (339)
T 3o4o_C 11 HTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRIN-------LTWHKNDSARTVPG-----EEETRMWA 78 (339)
T ss_dssp -------CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCB-------CCCEESSCCSCCSC-----CSSSCEEE
T ss_pred ccCcchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCce-------EEEEECCCCcccCc-----cccccEEe
Confidence 344556678999999999999999999999997 666666 99999544321110 01223322
Q ss_pred EEcCCceEEEEEccceecCCEEEEEEccC-------------------------------------------------CC
Q psy5838 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNT-------------------------------------------------NP 113 (215)
Q Consensus 83 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-------------------------------------------------~~ 113 (215)
..+.|.|.+++.+|+|.|+|.+.+ .|
T Consensus 79 -----~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p 153 (339)
T 3o4o_C 79 -----QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT 153 (339)
T ss_dssp -----ETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSS
T ss_pred -----eCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCC
Confidence 223899999999999999998763 12
Q ss_pred ceEEEEccC---------------CeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEEc-----CCeEEecC
Q psy5838 114 RISLTYNDH---------------RSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVVV-----PPSIIDKD 168 (215)
Q Consensus 114 ~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~-----~p~~~~~~ 168 (215)
.+.+.|... ....|.|.+++.+|+|.|+|.+.+.. .....+.|.|.. +|.+..
T Consensus 154 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~-- 231 (339)
T 3o4o_C 154 DVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS-- 231 (339)
T ss_dssp CCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECC--
T ss_pred CceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEec--
Confidence 233344210 11369999999999999999997532 234455677764 334433
Q ss_pred CCcceeeecCCcEEEEEEe---cccC-CCeEEEEeCCCcccc
Q psy5838 169 TSTDLVVREQANVTLNCKA---QGYP-EPYVMWRREDGANLS 206 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~---~~~p-~~~i~W~~~~~~~~~ 206 (215)
.+....+..|+++.|.|.+ .|.| .+.+.|++ +|..+.
T Consensus 232 ~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~-~g~~~~ 272 (339)
T 3o4o_C 232 PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA-NDTHIE 272 (339)
T ss_dssp CSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEES-SSSCSS
T ss_pred CCceeEeccCCCEEEEEEEECCCCCCCCceEEEEE-CCeecc
Confidence 2445567899999999999 8998 78999999 776543
No 32
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.78 E-value=2.8e-17 Score=137.04 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=125.8
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEe-eec---eeeeCCceEEEEcC--Cc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSI-HHN---VITQNPRISLTYND--HR 88 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~ 88 (215)
..|.|...+....+.+|++++|.|.+.+.+ .+. +.|+|+++...... ... ......|+.+...+ ..
T Consensus 111 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 183 (585)
T 2ocw_A 111 QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR-------KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183 (585)
T ss_pred cCccccCCCccEEEEcCCCEEEEEEecCCCCCcc-------EEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCc
Confidence 357788888899999999999999998543 444 89999654432111 100 00113455554432 23
Q ss_pred eEEEEEccceecCCEEEEEEccC------------------------------------CCc---eEEEEc-cCC-----
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNT------------------------------------NPR---ISLTYN-DHR----- 123 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~------------------------------------~~~---~~~~~~-~~~----- 123 (215)
...|.|.+++.+|+|.|+|.+.+ .+. +.|.|. ...
T Consensus 184 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~ 263 (585)
T 2ocw_A 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263 (585)
T ss_pred EEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcce
Confidence 45899999999999999999773 122 677774 111
Q ss_pred -----------------------e--EEEEEcccCCCCCeEEEEEeecCCCcc-----eeeEEEEEcCCeEEecCCCcce
Q psy5838 124 -----------------------S--WFLNIKNVQESDRGWYMCQVNTDPMRS-----RQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 124 -----------------------~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
+ ..|.|.+++.+|+|.|+|.+.+.+... ..+.|.|..+|.+.. .+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~--~~~~~ 341 (585)
T 2ocw_A 264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR--SPTVV 341 (585)
T ss_pred EEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEeccccccc--CCcce
Confidence 1 169999999999999999998754444 667788888877654 34566
Q ss_pred eeecCCcEEEEEEecccCCCeE----EEEe
Q psy5838 174 VVREQANVTLNCKAQGYPEPYV----MWRR 199 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i----~W~~ 199 (215)
.+.+|+.+.|.|.+.+.|.+.+ .|++
T Consensus 342 ~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~ 371 (585)
T 2ocw_A 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371 (585)
T ss_pred EEEeCCcEEEEEecCCCCCccEEEEEEEEc
Confidence 7889999999999999998876 7998
No 33
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.78 E-value=7e-18 Score=139.41 Aligned_cols=156 Identities=19% Similarity=0.383 Sum_probs=106.4
Q ss_pred CCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeec-e-eeeCCceEEEEcCCceEEEEEcccee
Q psy5838 23 PIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHN-V-ITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
++....+.+|+++.|.|.+. +.+.+. +.|++++ ..+...... . .....+.. ...+.|.|.+++.
T Consensus 233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~-------i~W~k~g-~~l~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~ 299 (527)
T 3qs9_E 233 TLPQLFLKVGEPLWIRCKAVHVNHGFG-------LTWELEN-KALEEGNYFEMSTYSTNRTM-----IRILFAFVSSVAR 299 (527)
T ss_dssp SCCEEEECTTSCEEEEEEEEESSSCCC-------EEEECSS-SCCCGGGEEEEEEEETTTEE-----EEEEEEEESSCCG
T ss_pred CCCceEEeCCCeEEEEEEEccCCCCeE-------EEEEECC-EECCCCceeeeeeeccCcce-----eeEEEEEEccCCc
Confidence 55678899999999999996 777777 9999954 332110000 0 00001110 1345799999999
Q ss_pred cCCEEEEEEccC-----------------------------------------CCceEEEEccC------------CeEE
Q psy5838 100 SDRGWYMCQVNT-----------------------------------------NPRISLTYNDH------------RSWF 126 (215)
Q Consensus 100 ~d~G~Y~C~~~~-----------------------------------------~~~~~~~~~~~------------~~~~ 126 (215)
+|+|.|+|.|.+ .|.+.+.|... ....
T Consensus 300 ~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~ 379 (527)
T 3qs9_E 300 NDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379 (527)
T ss_dssp GGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSE
T ss_pred ccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcE
Confidence 999999998764 34556667321 1346
Q ss_pred EEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCC
Q psy5838 127 LNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~ 201 (215)
|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+.... .| ..|.|.+.|.|.|.+.|++.+
T Consensus 380 L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~--------~~--~~l~C~a~g~P~p~i~W~~~~ 445 (527)
T 3qs9_E 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEA--------SA--SQASCFSDGYPLPSWTWKKCS 445 (527)
T ss_dssp EEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECC--------CC--E---EEEECSSCCEEEEECCC
T ss_pred EEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeC--------CC--CEEEEEEEEEcCCeEEEEECC
Confidence 899999999999999999764 445566778888888876531 12 357999999999999999843
No 34
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.78 E-value=1.1e-17 Score=120.58 Aligned_cols=144 Identities=22% Similarity=0.335 Sum_probs=100.4
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++.........
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~-~~~~~-------~~~~~~~~~~~~~~~------ 61 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPI-------VKWYRQ-GKEII-------ADGLKYRIQEFKGGY------ 61 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCE-------EEEEET-TEECC-------CCSSSEEEEEETTTE------
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCE-------EEEEEC-CEECc-------cCCCcEEEEEcCCCE------
Confidence 468898888999999999999999999877776 999994 43321 112233332221111
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecC---CCc
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKD---TST 171 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~---~~~ 171 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+.... ...
T Consensus 62 -----------------------------~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~ 112 (197)
T 2j8h_A 62 -----------------------------HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112 (197)
T ss_dssp -----------------------------EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBE
T ss_pred -----------------------------EEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccC
Confidence 24667777777888888887543 333555667777766654321 123
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
...+.+|+.+.|.|.+.+.|.|.+.|++ ++..+....+
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~ 150 (197)
T 2j8h_A 113 AVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGH 150 (197)
T ss_dssp EEEEETTCCCEEEEEEEEESCCEEEEEE-SSCEECSSSS
T ss_pred eEEEeCCCEEEEEEEEEecCCCcEEEEE-CCEEeecCCC
Confidence 4567899999999999999999999999 7777765444
No 35
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.78 E-value=8.3e-18 Score=138.64 Aligned_cols=168 Identities=20% Similarity=0.310 Sum_probs=118.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc-EEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT-ILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..|.|...+....+.+|++++|.|.+.+.+.+. .+.|++++... +....+.....+.. ....+.|.|
T Consensus 210 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~------~i~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~I 277 (524)
T 2ec8_A 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV------YSTWKRENSQTKLQEKYNSWHHGDFN------YERQATLTI 277 (524)
T ss_dssp SCCEEECSCSEEEEETTSCEEEEEEEEESSTTC------EEEEEETTCSCCCCEEEEEEECSSSC------EEEEEEEEE
T ss_pred CCCcEEecCCcceEEcCCcEEEEEEEecCCCcE------EEEEEeCCCCCccccccccccccCCc------cceEEEEEE
Confidence 568888888888999999999999999876553 28999965441 11111101100001 113568999
Q ss_pred ccceecCCEEEEEEccC---------------------------------------------CCceE-EEEccC------
Q psy5838 95 KNVQESDRGWYMCQVNT---------------------------------------------NPRIS-LTYNDH------ 122 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~---------------------------------------------~~~~~-~~~~~~------ 122 (215)
.+++.+|+|.|+|.+.+ .|.+. +.|...
T Consensus 278 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~ 357 (524)
T 2ec8_A 278 SSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357 (524)
T ss_dssp SSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred CCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence 99999999999999763 23444 666221
Q ss_pred ---------------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEE
Q psy5838 123 ---------------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186 (215)
Q Consensus 123 ---------------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~ 186 (215)
....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.+..... ..+| .|.|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~-----~~~g---~l~C~ 429 (524)
T 2ec8_A 358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDR-----LVNG---MLQCV 429 (524)
T ss_dssp SBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEEC-----CSSS---CEEEE
T ss_pred CccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeeccc-----CcCc---EEEEE
Confidence 135799999999999999999976 34556667788888888765321 3455 99999
Q ss_pred ecccCCCeEEEEeCCCcc
Q psy5838 187 AQGYPEPYVMWRREDGAN 204 (215)
Q Consensus 187 ~~~~p~~~i~W~~~~~~~ 204 (215)
+.|.|.|.+.|++ ++..
T Consensus 430 ~~g~P~p~i~W~~-~~~~ 446 (524)
T 2ec8_A 430 AAGFPEPTIDWYF-CPGT 446 (524)
T ss_dssp EEEESCCEEECCC-C---
T ss_pred EEeecCCEEEEEE-CCCc
Confidence 9999999999999 5433
No 36
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.77 E-value=3.9e-18 Score=131.98 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=110.1
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
...+|.|...|. ..+.+|++++|.|.+.+. .+. +.|+|++.. +.. . .......+.|.
T Consensus 21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~-------~~W~k~g~~-~~~----------~---~~~~~~~~~L~ 77 (316)
T 3vh8_G 21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNN-------FMLYKEDRI-HIP----------I---FHGRIFQESFN 77 (316)
T ss_dssp ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCS-------EEEEESSCS-SSC----------H---HHHCCBSSCEE
T ss_pred CCCCCEeeccCC-CccCCCCCEEEEEEccCC-Cce-------EEEEeCCCc-cce----------e---ecCCcceEEEE
Confidence 345677777776 568899999999999877 444 999995433 210 0 00011345899
Q ss_pred EccceecCCEEEEEEccC------------------------------------------------CCceEEEEcc----
Q psy5838 94 IKNVQESDRGWYMCQVNT------------------------------------------------NPRISLTYND---- 121 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~------------------------------------------------~~~~~~~~~~---- 121 (215)
|.+++.+|+|.|+|.+.+ .+...+.|..
T Consensus 78 I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~ 157 (316)
T 3vh8_G 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGIS 157 (316)
T ss_dssp ECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCC
T ss_pred ECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCc
Confidence 999999999999998641 0111222211
Q ss_pred -------------CCeEEEEEcccCCCCCeEEEEEeecCCC------cceeeEEEEEc---CCeEEecCCCcceeeecCC
Q psy5838 122 -------------HRSWFLNIKNVQESDRGWYMCQVNTDPM------RSRQGYLQVVV---PPSIIDKDTSTDLVVREQA 179 (215)
Q Consensus 122 -------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~ 179 (215)
.....|.|.+++.+|+|.|+|.+.+... .+..+.+.|.. +|.+.... ...+.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~---~~~v~~G~ 234 (316)
T 3vh8_G 158 KDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP---GPKVQAGE 234 (316)
T ss_dssp SCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES---CSCCCTTS
T ss_pred cccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC---CCeecCCC
Confidence 1234689999999999999999976322 24556677763 34444321 22468999
Q ss_pred cEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 180 NVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 180 ~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
++.|.|.+.. |.+.+.|++ +|..+.
T Consensus 235 ~v~L~C~~~~-~~~~~~W~k-~g~~~~ 259 (316)
T 3vh8_G 235 SVTLSCSSRS-SYDMYHLSR-EGGAHE 259 (316)
T ss_dssp CCEEEEEESS-CCSEEEEEE-TTSSCC
T ss_pred cEEEEEECCC-CCcEEEEEE-CCCcCC
Confidence 9999999974 778999999 776554
No 37
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.77 E-value=1.2e-18 Score=134.63 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=113.8
Q ss_pred CCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
.....+.+.+|+++.|.|.+.+.+ .+. +.|+|++...... .....++... .+.|.|.+++.+
T Consensus 10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~~~~~~~~-----~~~~~~~~~~-----~~~L~i~~v~~~ 72 (315)
T 1itb_B 10 EEKIILVSSANEIDVRPCPLNPNEHKGT-------ITWYKDDSKTPVS-----TEQASRIHQH-----KEKLWFVPAKVE 72 (315)
T ss_dssp CCCCCCEEETTSCCCCBCCCCSCCCSSC-------CCEECTTSCSCSC-----CCTTSSSEEC-----SSBEECTTCCGG
T ss_pred cCceEEEEcCCCcEEEEeeccCcCCCce-------EEEEeCCCcCccc-----cccCCcEecc-----CCeEEECCCChh
Confidence 344578899999999999998876 555 9999965322110 0123333332 237999999999
Q ss_pred CCEEEEEEccC----------------------------------------------------CCceEEEEccC------
Q psy5838 101 DRGWYMCQVNT----------------------------------------------------NPRISLTYNDH------ 122 (215)
Q Consensus 101 d~G~Y~C~~~~----------------------------------------------------~~~~~~~~~~~------ 122 (215)
|+|.|+|.+.+ .|.+.+.|...
T Consensus 73 D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~ 152 (315)
T 1itb_B 73 DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152 (315)
T ss_dssp GCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC
T ss_pred hCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC
Confidence 99999998763 12234444211
Q ss_pred -------CeEEEEEcccCCCCCeEEEEEee-cC-CCc---ceeeEEEEE-----cCCeEEecCCCcceeeecCCcEEEEE
Q psy5838 123 -------RSWFLNIKNVQESDRGWYMCQVN-TD-PMR---SRQGYLQVV-----VPPSIIDKDTSTDLVVREQANVTLNC 185 (215)
Q Consensus 123 -------~~~~l~i~~~~~~d~G~Y~C~~~-~~-~~~---~~~~~l~v~-----~~p~~~~~~~~~~~~~~~g~~~~l~C 185 (215)
.+..|.|.+++.+|+|.|+|.+. +. +.. ...+.+.+. .+|.+... ......+.+|+.+.|.|
T Consensus 153 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~v~l~C 231 (315)
T 1itb_B 153 DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP-ANETMEVDLGSQIQLIC 231 (315)
T ss_dssp CSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSC-CSEEEECCSSSCEEEEE
T ss_pred ccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecC-CCCcEEEeCCCcEEEEE
Confidence 12358999999999999999997 43 322 222333333 34555432 22224688999999999
Q ss_pred EecccCCCeEEEEeCCCcccccc
Q psy5838 186 KAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 186 ~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
.+.|.|.|.+.|++ +|..+...
T Consensus 232 ~~~g~P~p~i~W~~-~g~~i~~~ 253 (315)
T 1itb_B 232 NVTGQLSDIAYWKW-NGSVIDED 253 (315)
T ss_dssp EEEECTTSEEEEEE-TTEECCTT
T ss_pred EEecCCCCeeEEEE-CCEECCcc
Confidence 99999999999999 88877654
No 38
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.77 E-value=1.9e-17 Score=118.74 Aligned_cols=139 Identities=18% Similarity=0.348 Sum_probs=97.7
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
+.|...+....+.+|++++|.|.+.+.+ .+. +.|++.++..+. ....++.....+...
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~-------v~W~~~~g~~~~-------~~~~~~~~~~~~~~~------- 61 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKD-------ISWFSPNGEKLS-------PNQQRISVVWNDDDS------- 61 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEECCCSCCCE-------EEEECTTSCEEC-------CBSSSEEEEEEETTE-------
T ss_pred eEEEecCCCcEEcCCCCEEEEEECCCCCCCce-------EEEEeCCCcccc-------CCCCeEEEEECCCCc-------
Confidence 5566778889999999999999999865 455 999995555432 123344433322122
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEEecCCCccee
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLV 174 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~ 174 (215)
..|.|.+++.+|+|.|+|.+.+.. .....+.+.|..+|.+... +....
T Consensus 62 ----------------------------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~ 111 (191)
T 1epf_A 62 ----------------------------STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQE 111 (191)
T ss_dssp ----------------------------EEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEEC--CSSEE
T ss_pred ----------------------------eEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecC--CCcEe
Confidence 346677777777778888775542 3344556777778877653 34556
Q ss_pred eecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 175 VREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
+.+|+++.|.|.+.+.|.+.+.|++ ++..+...
T Consensus 112 ~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~ 144 (191)
T 1epf_A 112 FKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILK 144 (191)
T ss_dssp CCTTSCEEECCEEECSSCCEEEEEE-TTEEGGGG
T ss_pred ecCCCeEEEEEEECCCCCCEEEEEE-CCEEeecc
Confidence 7899999999999999999999999 77766543
No 39
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.77 E-value=1.4e-17 Score=134.21 Aligned_cols=172 Identities=17% Similarity=0.259 Sum_probs=114.4
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCc----cceeeeEEEEEEecC-CccE--EEeeec--eeeeCCceEEEEcCCce
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGF----KGLRIGWQVAWVRVD-TQTI--LSIHHN--VITQNPRISLTYNDHRS 89 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~----~~~~~~~~v~W~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~~~~ 89 (215)
.|...|..+.+.+|++++|.|.+.+.+.+ . +.|+|++ +..+ +..... ......|+..... ...
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~ 74 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSF-------MHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGS-RTD 74 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEEC-------EEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEE-TTE
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcce-------EEEEEECCCCCcEEEEEECcccCCCccCcEEEEcc-CCc
Confidence 34555778899999999999999876652 4 9999963 2221 111000 0112356666543 356
Q ss_pred EEEEEccceecCCEEEEEEccC-----------------------------------------------CCce-EEEEcc
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNT-----------------------------------------------NPRI-SLTYND 121 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~-----------------------------------------------~~~~-~~~~~~ 121 (215)
+.|.|.+++.+|+|.|+|.+.+ .|.+ .+.|..
T Consensus 75 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k 154 (438)
T 1qgc_4 75 FTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 154 (438)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred EEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE
Confidence 7899999999999999999763 2222 566632
Q ss_pred CC-----------------------eEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcC-CeEEecCCCcceeeec
Q psy5838 122 HR-----------------------SWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP-PSIIDKDTSTDLVVRE 177 (215)
Q Consensus 122 ~~-----------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~ 177 (215)
.. ...|.|.+++.+|+|.|+|.+.+..... .+.+.+... +..... .+....+.+
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~-~~~~~~v~~ 232 (438)
T 1qgc_4 155 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLV-ESGGGLVKP 232 (438)
T ss_dssp TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEE-EECCEEECT
T ss_pred CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEe-cCCceEEec
Confidence 11 2368899999999999999997643222 334444321 111111 234556889
Q ss_pred CCcEEEEEEecccC--CCeEEEEeC
Q psy5838 178 QANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 178 g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
|+++.|.|.+.+.| .+.+.|+++
T Consensus 233 G~~v~L~C~~~g~p~~~~~v~W~k~ 257 (438)
T 1qgc_4 233 GGSLKLSCTASGFIFNRCAMSWVRQ 257 (438)
T ss_dssp TCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred CCcEEEEEEEcccccCCcEEEEEEC
Confidence 99999999999988 568999994
No 40
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.77 E-value=3.7e-19 Score=138.53 Aligned_cols=168 Identities=21% Similarity=0.386 Sum_probs=63.4
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.+.. +..+.+.+|++++|.|.+.+. +.+. +.|+++ +..+. ...++.. ..+.|.|.
T Consensus 9 ~p~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~k~-g~~~~--------~~~~~~~-----~~~~L~i~ 66 (334)
T 1ry7_B 9 GPEPGQ-QEQLVFGSGDAVELSCPPPGGGPMGP-------TVWVKD-GTGLV--------PSERVLV-----GPQRLQVL 66 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCC-cCcEEEecCCcEEEEeeCCCCCCCcc-------eEEEEC-CeeCC--------CcccEEe-----ccceEEEe
Confidence 344444 678889999999999999875 4455 999994 44331 2233322 23489999
Q ss_pred cceecCCEEEEEEccCC---------------------------------------------------------------
Q psy5838 96 NVQESDRGWYMCQVNTN--------------------------------------------------------------- 112 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~--------------------------------------------------------------- 112 (215)
+++.+|+|.|+|.+.+.
T Consensus 67 ~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~ 146 (334)
T 1ry7_B 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP 146 (334)
T ss_dssp ----------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECC
T ss_pred ecccccCEEEEEEEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEE
Confidence 99999999999987431
Q ss_pred ----CceEEEEcc-----------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCe---EEec
Q psy5838 113 ----PRISLTYND-----------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPS---IIDK 167 (215)
Q Consensus 113 ----~~~~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~---~~~~ 167 (215)
|.+.+.|.. .....|.|.+++.+|+|.|+|.+.+. +.....+.+.|...+. ....
T Consensus 147 ~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~ 226 (334)
T 1ry7_B 147 AAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 226 (334)
T ss_dssp CCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCT
T ss_pred ccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEe
Confidence 223344421 11236999999999999999999764 3445556677765321 1111
Q ss_pred CCCcceeeecCCcEEEEEEecccCCCeEEEEeC---CCcccc
Q psy5838 168 DTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE---DGANLS 206 (215)
Q Consensus 168 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~---~~~~~~ 206 (215)
..+....+.+|+.+.|.|.+.+.|.+.+.|++. +|..+.
T Consensus 227 ~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~ 268 (334)
T 1ry7_B 227 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268 (334)
T ss_dssp TCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBC
T ss_pred cCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcccc
Confidence 123456688999999999999999999999994 344444
No 41
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-17 Score=134.67 Aligned_cols=172 Identities=18% Similarity=0.270 Sum_probs=113.3
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEE--Eeee--ceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTIL--SIHH--NVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
.|..+.+.+|++++|.|.+.+.+.+. +.|+|++ +..+. .... .......|+.... ....+.|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v 77 (523)
T 2rcj_C 6 QPPSASGTPGQRVTISCTGTSSGSIT-------VNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK-SGTSASLAISGL 77 (523)
T ss_pred cCCceEEecCCcEEEEEEEeccCCce-------EEEEEeCCCCCcEEEEEeccccCcccCCcEEEec-CCCEEEEEECCC
Confidence 35688999999999999998877666 9999964 22211 1100 0011235655332 235678999999
Q ss_pred eecCCEEEEEEccC-------------------------------------------------C-Cc-eEEEEccCC---
Q psy5838 98 QESDRGWYMCQVNT-------------------------------------------------N-PR-ISLTYNDHR--- 123 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~-------------------------------------------------~-~~-~~~~~~~~~--- 123 (215)
+.+|+|.|+|.+.+ . |. +.+.|....
T Consensus 78 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 157 (523)
T 2rcj_C 78 EAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPV 157 (523)
T ss_pred ChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCC
Confidence 99999999999763 1 11 356663210
Q ss_pred -------------------eEEEEEcccCCCCCeEEEEEeecCC-CcceeeEEE----EEcCCeEEecCCCcceeeecCC
Q psy5838 124 -------------------SWFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQ----VVVPPSIIDKDTSTDLVVREQA 179 (215)
Q Consensus 124 -------------------~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~g~ 179 (215)
...|.|.+++.+|+|.|+|.+.+.. .....+.+. +..+|.+... .+...+.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~--~~~~~~~~G~ 235 (523)
T 2rcj_C 158 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPL--APSSKSTSGG 235 (523)
T ss_pred CCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEec--CCCcccccCC
Confidence 1248899999999999999997642 222222222 1235555432 2223457899
Q ss_pred cEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 180 NVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 180 ~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
.+.|.|.+.+. |.| .+.|++ +|..+
T Consensus 236 ~~~l~C~~~g~~P~p~~v~W~k-~g~~~ 262 (523)
T 2rcj_C 236 TAALGCLVKDYFPQPVTVSWNS-GALTS 262 (523)
T ss_pred ceEEEEEEeceeCCCeEEEEec-CCccc
Confidence 99999999886 877 899999 66553
No 42
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.6e-17 Score=118.30 Aligned_cols=142 Identities=17% Similarity=0.297 Sum_probs=99.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|+++.|.|.+.+.+.+. +.|+++ +..+ ....++.+...+ ..
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~-~~~~--------~~~~~~~~~~~~-~~------ 62 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD-------IKWYRF-GKEL--------IQSRKYKMSSDG-RT------ 62 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCCE-------EEEEET-TEEE--------CCCSSEEEEESS-SE------
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCCE-------EEEEEC-CEEC--------CCCccEEEEeCC-CE------
Confidence 468888888999999999999999998877776 999994 4433 123333333222 12
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEec-CCCcce
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDK-DTSTDL 173 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~-~~~~~~ 173 (215)
..|.|.+++.+|+|.|+|.+.+. +.......+.|..+|..... ......
T Consensus 63 -----------------------------~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~ 113 (197)
T 3lcy_A 63 -----------------------------HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113 (197)
T ss_dssp -----------------------------EEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEE
T ss_pred -----------------------------EEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcce
Confidence 23667777777777788877542 33344556777766665432 123445
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
.+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....+
T Consensus 114 ~~~~g~~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~~ 149 (197)
T 3lcy_A 114 YGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLLQNSEN 149 (197)
T ss_dssp EEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSS
T ss_pred eecCCCeEEEEEEEeeeeCCeeEEeE-CCEECCCCCc
Confidence 67899999999999999999999999 7777664433
No 43
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.77 E-value=4.1e-18 Score=134.93 Aligned_cols=169 Identities=24% Similarity=0.322 Sum_probs=117.7
Q ss_pred CCCcccCCCCceEE---EeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 16 LMPHFAEPIPNVTV---TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 16 ~~p~~~~~~~~~~~---~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.+|.|...|....+ .+|++++|.|.+.+.+.+. +.|+|+ +..+.. ..+.++... .+.|
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~-------v~W~k~-g~~~~~------~~~~~~~~~-----~~~L 63 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPAT-------YRWKMN-GTELKM------GPDSRYRLV-----AGDL 63 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCE-------EEEEET-TEECCC------STTSSEEEE-----TTEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCE-------EEEEEC-CEECCc------CCCccEEee-----CCeE
Confidence 46888888888777 6899999999999887776 999994 443311 113344432 2379
Q ss_pred EEcccee-cCCEEEEEEccC---------------------------------------------CCceEEEEccC----
Q psy5838 93 NIKNVQE-SDRGWYMCQVNT---------------------------------------------NPRISLTYNDH---- 122 (215)
Q Consensus 93 ~i~~~~~-~d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~~---- 122 (215)
.|.++.. +|+|.|+|.+.+ .|.+.+.|...
T Consensus 64 ~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~ 143 (382)
T 1cs6_A 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN 143 (382)
T ss_dssp EEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTC
T ss_pred EEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCcc
Confidence 9999987 999999998763 13345566321
Q ss_pred ------------CeEEEEEcccCCCCCeEEEEEeecCC-Cc-----ceeeEEEEEc------CCeEEecCCCcceeeecC
Q psy5838 123 ------------RSWFLNIKNVQESDRGWYMCQVNTDP-MR-----SRQGYLQVVV------PPSIIDKDTSTDLVVREQ 178 (215)
Q Consensus 123 ------------~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-----~~~~~l~v~~------~p~~~~~~~~~~~~~~~g 178 (215)
....|.|.+++.+|+|.|+|.+.+.. .. .....+.+.. +|.+... .+....+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~-~~~~~~~~~G 222 (382)
T 1cs6_A 144 FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK-FPADTYALTG 222 (382)
T ss_dssp BCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC-CCSEEEEETT
T ss_pred ccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceecc-CCCceEEeCC
Confidence 12458999999999999999996532 11 2223444432 3444332 2345668899
Q ss_pred CcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 179 ANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 179 ~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
+.+.|.|.+.+.|.+.+.|++ ++..+
T Consensus 223 ~~v~l~C~~~g~p~~~i~W~~-~~~~~ 248 (382)
T 1cs6_A 223 QMVTLECFAFGNPVPQIKWRK-LDGSQ 248 (382)
T ss_dssp CCEEEECEEEEESCCEEEEEE-CCSCC
T ss_pred CeEEEEEEEccCCCCEEEEEE-CCccc
Confidence 999999999999999999999 44433
No 44
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-17 Score=137.11 Aligned_cols=175 Identities=17% Similarity=0.252 Sum_probs=113.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCccEEEeeece---eeeCCceEEEEcCCceE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQTILSIHHNV---ITQNPRISLTYNDHRSW 90 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 90 (215)
..|.+...+....+.+|++++|.|.+.+.+.+ . +.|+| ++..+....... ...+..+. ...
T Consensus 113 ~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~-------v~W~k-~g~~l~~~~~~~~~~~~~~~~~~------~~s 178 (523)
T 2rcj_C 113 ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVT-------VAWKA-DGSPVKAGVETTKPSKQSNNKYA------ASS 178 (523)
T ss_pred cCCeEEecCCcccccCCCceEEEEEeccccCCceE-------EEEec-CCCCCCCceEeccccccCCCCEE------EEE
Confidence 35666655666667789999999999986543 4 99999 454432110000 00111111 123
Q ss_pred EEEEccceecCCEEEEEEccC----------------------------------------------C-Cce-EEEEccC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT----------------------------------------------N-PRI-SLTYNDH 122 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~----------------------------------------------~-~~~-~~~~~~~ 122 (215)
.|.|.++..+|+|.|+|.|.+ . |.+ .++|...
T Consensus 179 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~ 258 (523)
T 2rcj_C 179 YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSG 258 (523)
T ss_pred EEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecC
Confidence 699999999999999998752 1 333 6777331
Q ss_pred C--------------------eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcE
Q psy5838 123 R--------------------SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 123 ~--------------------~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~ 181 (215)
. ...|.|.+++.+| |.|+|.+.+. +.......+.+...|.+..........+.+|+.+
T Consensus 259 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~ 337 (523)
T 2rcj_C 259 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTP 337 (523)
T ss_pred CcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCce
Confidence 1 1368999999999 9999999763 3334444555555566544322222236789999
Q ss_pred EEEEEecccCC----CeEEEEeCCCcccc
Q psy5838 182 TLNCKAQGYPE----PYVMWRREDGANLS 206 (215)
Q Consensus 182 ~l~C~~~~~p~----~~i~W~~~~~~~~~ 206 (215)
.|.|.+.|.|+ +.+.|++ +|..+.
T Consensus 338 ~l~C~~~g~~p~~~~~~v~W~k-~g~~l~ 365 (523)
T 2rcj_C 338 EVTCVVVDVSHEDPQVKFNWYV-DGVQVH 365 (523)
T ss_pred EEEEEEecccCCCCceEEEEEE-CCeEcc
Confidence 99999998653 4899999 776664
No 45
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.76 E-value=9.8e-18 Score=130.54 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=112.3
Q ss_pred CceEEEeCCcEEEEEEeecc---------CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 25 PNVTVTVGRDALLACVVDNL---------KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~---------~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..+.+.+|+++.|.|.+.+. +.+. +.|+|++.. +. ...+. . ..+.|.|.
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~-------v~W~k~~~~-~~--------~~~~~--~----~~~~L~i~ 94 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNV-------VNWEKIGKT-RR--------PLNRR--V----KNGDLWIA 94 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCE-------EEEEECSSS-CE--------ECSTT--E----ETTEEEES
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCe-------eEEEECCCC-cc--------ccCce--e----ecceEEEc
Confidence 56778999999999999874 3344 999995543 21 11222 1 23489999
Q ss_pred cceecCCE-EEEEEccC-------------------------------------------CC-ceEEEEccCC-------
Q psy5838 96 NVQESDRG-WYMCQVNT-------------------------------------------NP-RISLTYNDHR------- 123 (215)
Q Consensus 96 ~~~~~d~G-~Y~C~~~~-------------------------------------------~~-~~~~~~~~~~------- 123 (215)
+++.+|+| .|+|.+.+ .| .+.+.|....
T Consensus 95 ~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~ 174 (329)
T 3oq3_B 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG 174 (329)
T ss_dssp SCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSS
T ss_pred CCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCC
Confidence 99999999 99998763 45 5677774211
Q ss_pred ------eEEEEEcccCCCCCeEEEEEeecC---CCccee----eEEEEEcCCeE--EecCCCcceeeecCCcEEEEEEec
Q psy5838 124 ------SWFLNIKNVQESDRGWYMCQVNTD---PMRSRQ----GYLQVVVPPSI--IDKDTSTDLVVREQANVTLNCKAQ 188 (215)
Q Consensus 124 ------~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~----~~l~v~~~p~~--~~~~~~~~~~~~~g~~~~l~C~~~ 188 (215)
+..|.|.+++.+|+|.|+|.+.+. +..... +.+.|..+|.. ... .+....+.+|+.+.|.|.+.
T Consensus 175 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~ 253 (329)
T 3oq3_B 175 TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAV 253 (329)
T ss_dssp SSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEE
T ss_pred ceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEE
Confidence 246899999999999999999753 222222 55777766621 222 34456789999999999999
Q ss_pred ccC---CC-eEEEEeCCCccc
Q psy5838 189 GYP---EP-YVMWRREDGANL 205 (215)
Q Consensus 189 ~~p---~~-~i~W~~~~~~~~ 205 (215)
+.| .+ .+.|++ +|..+
T Consensus 254 g~p~~~~~i~v~W~~-~g~~i 273 (329)
T 3oq3_B 254 STSLLVDDVLIDWEN-PSGWI 273 (329)
T ss_dssp ETTCCTTCCEEEEEC-TTSCB
T ss_pred ECCCCCCCcEEEEEE-CCeee
Confidence 987 67 889999 66653
No 46
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.76 E-value=1.1e-17 Score=144.69 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=121.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.+...+....+.+|++++|.|.+.+.+.+. +.|++ ++..+. .....|.|.++
T Consensus 344 ~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-------v~W~k-~g~~~~-------------------~~~~~L~i~~v 396 (816)
T 3dmk_A 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT-------VSWMK-DGKAIG-------------------HSESVLRIESV 396 (816)
T ss_dssp EEEEEESSEEECCTTSCEEEEEEEEEECCCE-------EEEEE-TTEECS-------------------CCSSEEEESSC
T ss_pred CceeeCCCceEecCCCCEEEEEEEeccCCCE-------EEEEE-CCEECC-------------------CCCCEEEEcCC
Confidence 4444556677888999999999999888777 99999 444321 02347999999
Q ss_pred eecCCEEEEEEccC---------------------------------------------CCceEEEEccC----------
Q psy5838 98 QESDRGWYMCQVNT---------------------------------------------NPRISLTYNDH---------- 122 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~~---------- 122 (215)
+.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 397 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~ 476 (816)
T 3dmk_A 397 KKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476 (816)
T ss_dssp CGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTE
T ss_pred CHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCc
Confidence 99999999998753 34455666221
Q ss_pred -----------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEeccc
Q psy5838 123 -----------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190 (215)
Q Consensus 123 -----------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 190 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+.. .....+.+|+.+.|.|.+.+.
T Consensus 477 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~---~~~~~v~~G~~v~l~C~~~g~ 553 (816)
T 3dmk_A 477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAIVAGETLIVTCPVAGY 553 (816)
T ss_dssp EEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECC---CCCEEEETTCCEEEECCEECS
T ss_pred ccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEc---cCCeEEecCCeEEEEEEecCC
Confidence 0135899999999999999999764 4455667788888876542 334567899999999999999
Q ss_pred CCCeEEEEeCCCccccccCC
Q psy5838 191 PEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 191 p~~~i~W~~~~~~~~~~~~~ 210 (215)
|.+.+.|++ +|..+....+
T Consensus 554 p~~~i~W~k-~~~~l~~~~~ 572 (816)
T 3dmk_A 554 PIDSIVWER-DNRALPINRK 572 (816)
T ss_dssp SEEEEEEEE-TTEESCCSTT
T ss_pred CCCEEEEEE-CCeEcccCCc
Confidence 988999999 7777654433
No 47
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.76 E-value=5.3e-17 Score=116.87 Aligned_cols=146 Identities=25% Similarity=0.413 Sum_probs=101.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.|...+..+.+.+|++++|.|.+. +.+.+. +.|++ ++..+.... ..++.+.......
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~~-~g~~l~~~~------~~~~~~~~~~~~~------ 61 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPE-------VHWLR-DGQILELAD------STQTQVPLGEDEQ------ 61 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCC-------CEEEE-TTEECCSCE------EEEEEEECSSSTT------
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcE-------EEEEE-CCEEcccCC------CCceEEEEccccc------
Confidence 57888899999999999999999999 777776 99999 444331100 0112121111000
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEEecCCCcce
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
+.|. ....|.|.+++.+|+|.|+|.+.+.. .....+.+.|..+|.+... +...
T Consensus 62 -------~~~~----------------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~ 116 (195)
T 2c5d_C 62 -------DDWI----------------VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE--PEDR 116 (195)
T ss_dssp -------SEEE----------------EEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC--CCCE
T ss_pred -------ccee----------------eccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC--CCcE
Confidence 0000 02357788888889999999986532 2234477888888877653 3446
Q ss_pred eeecCCcEEEEEEecccCCC-eEEEEeCCCcccccc
Q psy5838 174 VVREQANVTLNCKAQGYPEP-YVMWRREDGANLSYN 208 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~ 208 (215)
.+.+|+.+.|.|.+.+.|.| .+.|++ ++..+...
T Consensus 117 ~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~~~~ 151 (195)
T 2c5d_C 117 TVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATA 151 (195)
T ss_dssp EECTTCCEEEEEEEECSSCCCEEEEEE-SSCBSSSS
T ss_pred EEcCCCEEEEEeECCCCCCCCEEEEEE-CCEeccCC
Confidence 68899999999999999999 999999 77766543
No 48
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.76 E-value=3.2e-17 Score=117.73 Aligned_cols=142 Identities=25% Similarity=0.457 Sum_probs=96.2
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+.. ....++.....+ ..
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~-~~~~~~------~~~~~~~~~~~~-~~------ 62 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPE-------VSWFRD-GQVIST------STLPGVQISFSD-GR------ 62 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEES-SSBCCT------TTSTTCEEEEET-TE------
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCE-------EEEEEC-CEEccc------ccCCceEEEeCC-CE------
Confidence 468888888999999999999999999887776 999994 443210 001122222221 12
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE---cCCeEEecCCCc
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV---VPPSIIDKDTST 171 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~ 171 (215)
..|.|.+++..|+|.|+|.+.+. +.......+.|. .+|.+.. .+.
T Consensus 63 -----------------------------~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~--~~~ 111 (194)
T 2a38_A 63 -----------------------------AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ--RLQ 111 (194)
T ss_dssp -----------------------------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEE--CCC
T ss_pred -----------------------------EEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEe--CCc
Confidence 24667777777777777777543 233344556666 3444443 234
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
...+..|+.+.|.|.+.+.|.+.+.|++ +|..+....+
T Consensus 112 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~~ 149 (194)
T 2a38_A 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQSSLD 149 (194)
T ss_dssp CEEECTTEEEEEEEEEEEESCCEEEEEE-TTEECCCSSS
T ss_pred cEEEcCCCEEEEEEEEEEecCCeEEEEE-CCEECCCCCc
Confidence 5568899999999999999999999999 7777665443
No 49
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.75 E-value=6.6e-17 Score=115.75 Aligned_cols=133 Identities=16% Similarity=0.324 Sum_probs=93.7
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccce
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
+|...+..+.+.+|++++|.|.+.+.+. . +.|++.++..+ ....++.+...+
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~-------v~W~~~~~~~~--------~~~~~~~~~~~~------------ 55 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-S-------IDWYNPQGEKI--------ISTQRVVVQKEG------------ 55 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-E-------EEEECTTSCBC--------CCCSSEEEEEET------------
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-e-------EEEEeCCCCcc--------CCCceEEEECCC------------
Confidence 4666788899999999999999988765 4 99999555543 123344333222
Q ss_pred ecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-Cc-ceeeEEEEEcCCeEEecCCCcceeee
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MR-SRQGYLQVVVPPSIIDKDTSTDLVVR 176 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~l~v~~~p~~~~~~~~~~~~~~ 176 (215)
....|.|.+++.+|+|.|+|.+.+.. .. ...+.+.|..+|.+... .....+.
T Consensus 56 ------------------------~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~--~~~~~~~ 109 (189)
T 2v44_A 56 ------------------------VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV--VSPQEFK 109 (189)
T ss_dssp ------------------------TEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESC--CCSEEEE
T ss_pred ------------------------CeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeec--CCcEEEe
Confidence 11246677777788888888886532 22 45566788888876643 3345688
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.|+.+.|.|.+.+.|.|.+.|++ ++..+.
T Consensus 110 ~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~ 138 (189)
T 2v44_A 110 QGEDAEVVCRVSSSPAPAVSWLY-HNEEVT 138 (189)
T ss_dssp TTSCEEECCEEECSSCCEEEEEE-EC--CE
T ss_pred CCCCEEEEEEECcCCCCcEEEEE-CCcEEe
Confidence 99999999999999999999999 665554
No 50
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.75 E-value=9e-17 Score=114.35 Aligned_cols=137 Identities=26% Similarity=0.454 Sum_probs=95.3
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ...+....... ..
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~k~-~~~~~--------~~~~~~~~~~~-~~------- 57 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPD-------IQWVKD-GAVVQ--------NLDQLYIPVSE-QH------- 57 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCC-------EEEEET-TEECC--------SSEEEEEEEET-TE-------
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCe-------EEEEEC-CeecC--------CCCceEEEecC-CC-------
Confidence 47788888999999999999999999877776 999994 44321 11111111111 00
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCeEEecCCCccee
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLV 174 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~ 174 (215)
....|.|.+++.+|+|.|+|.+.+.. .....+.+.|..+|.+... +....
T Consensus 58 --------------------------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~ 109 (182)
T 1rhf_A 58 --------------------------WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLA 109 (182)
T ss_dssp --------------------------EEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC--CCCEE
T ss_pred --------------------------ceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec--CcceE
Confidence 01347788888888888888886542 2345677888888887753 34466
Q ss_pred eecCCcEEEEEEecccCCC-eEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQGYPEP-YVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~ 206 (215)
+.+|+.+.|.|.+.+.|.| .+.|++ ++..+.
T Consensus 110 ~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~~ 141 (182)
T 1rhf_A 110 VPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIG 141 (182)
T ss_dssp ECTTCCEEEEEEEECSSSCCEEEEEE-TTEECS
T ss_pred ecCCCEEEEEeEecCCCCCCEEEEEc-CCeECC
Confidence 8899999999999999999 999999 776654
No 51
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.75 E-value=1e-16 Score=117.03 Aligned_cols=140 Identities=20% Similarity=0.307 Sum_probs=99.7
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++........
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~-------v~W~~~-~~~~~-------~~~~~~~~~~~~~~------ 62 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPS-------IVWRKN-GKKVS-------GTQSRYTVLEQPGG------ 62 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCE-------EEEEET-TEECC-------TTSTTEEEEEETTT------
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCe-------EEEEEC-CEECC-------CCcceeEEEEcCCC------
Confidence 3578899999999999999999999999887776 999994 43321 12334433322111
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCC-CCCeEEEEEeecC-CC-cceeeEEEEEcC-------CeE
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE-SDRGWYMCQVNTD-PM-RSRQGYLQVVVP-------PSI 164 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~-~~-~~~~~~l~v~~~-------p~~ 164 (215)
...|.|.+++. .|+|.|+|.+.+. +. ....+.|.|..+ |.+
T Consensus 63 -----------------------------~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~ 113 (212)
T 2yd1_A 63 -----------------------------ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113 (212)
T ss_dssp -----------------------------EEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEE
T ss_pred -----------------------------eEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCee
Confidence 12467788887 8888888888653 23 345566777754 444
Q ss_pred EecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
.. .+....+..|+.+.|.|.+.+.|.+.+.|++ ++..+..
T Consensus 114 ~~--~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~-~~~~~~~ 153 (212)
T 2yd1_A 114 TQ--GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDM 153 (212)
T ss_dssp EE--CCCCEEEETTCCEEECCEEECSSCCEEEEEE-TTEECCT
T ss_pred Ee--CCCceEeecCCeEEEEEEeccCCCCeEEEEE-CCeEccc
Confidence 43 2344567899999999999999999999999 7776654
No 52
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.75 E-value=1.3e-17 Score=132.17 Aligned_cols=165 Identities=20% Similarity=0.300 Sum_probs=114.1
Q ss_pred CCcccCCCCc-eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPN-VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~-~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.|...|.. +.+.+|+.++|.|.+.+.+.+. +.|+|.++..+.. ..+..... ..+.|.|.
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~-------v~W~k~~g~~~~~--------~~~~~~~~---~~~~L~i~ 64 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPE-------IIWIRSDGTAVGD--------VPGLRQIS---SDGKLVFP 64 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCE-------EEEEETTSCBCCC--------BTTTBEEC---STTEEEEC
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCE-------EEEEcCCCCcccc--------CCCceEEc---CCceEEec
Confidence 5788777664 5677899999999999888887 9999965654421 11111121 23479999
Q ss_pred cceecC------CEEEEEEccC-------------------------------------------C---CceEEEEccC-
Q psy5838 96 NVQESD------RGWYMCQVNT-------------------------------------------N---PRISLTYNDH- 122 (215)
Q Consensus 96 ~~~~~d------~G~Y~C~~~~-------------------------------------------~---~~~~~~~~~~- 122 (215)
+++.+| +|.|+|.+.+ . +.+.+.|...
T Consensus 65 ~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~ 144 (388)
T 2v5m_A 65 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDE 144 (388)
T ss_dssp CCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETT
T ss_pred ccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCC
Confidence 999987 9999998762 1 1266777321
Q ss_pred -----------------CeEEEEEcccCCCCC-eEEEEEeecCCCcc-----eeeEEEEEcCCe-----EEecCCCccee
Q psy5838 123 -----------------RSWFLNIKNVQESDR-GWYMCQVNTDPMRS-----RQGYLQVVVPPS-----IIDKDTSTDLV 174 (215)
Q Consensus 123 -----------------~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~-----~~~~l~v~~~p~-----~~~~~~~~~~~ 174 (215)
.+..|.|.+++.+|+ |.|+|.+.+..... ....+.|..+.. .... ......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~ 223 (388)
T 2v5m_A 145 EENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL-VQKPLE 223 (388)
T ss_dssp CCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSS-CCCCEE
T ss_pred CcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccc-cCCceE
Confidence 123589999999999 99999997532111 112456655421 1111 123345
Q ss_pred eecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 175 VREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus 224 v~~G~~v~l~C~~~g~p~p~v~W~~~ 249 (388)
T 2v5m_A 224 LMVAHTISLLCPAQGFPAPSFRWYKF 249 (388)
T ss_dssp EETTSCEEECCCCEEESCCEEEEEEE
T ss_pred EeeCCcEEEEEECCCCCCCEEEEEec
Confidence 78999999999999999999999994
No 53
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.75 E-value=1.3e-17 Score=131.36 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=104.0
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEE
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYM 106 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 106 (215)
..+.+|++++|.|.+.+.+.+. +.|+++++. +. . ....|.|.+++.+|+|.|+
T Consensus 106 ~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~~~~-~~---------------~----~~~~L~i~~v~~~d~G~Y~ 158 (363)
T 1wio_A 106 THLLQGQSLTLTLESPPGSSPS-------VQCRSPRGK-NI---------------Q----GGKTLSVSQLELQDSGTWT 158 (363)
T ss_dssp SSEESBSCEEEEEECCTTCCCC-------EEEECSSSC-EE---------------E----ESSEEEECSBCGGGCEECE
T ss_pred eEEecCCCEEEEEEcCCCCCCe-------EEEEcCCCc-cc---------------c----cceEEEEeeCChhcCCEEE
Confidence 3678999999999998877777 999995433 11 0 2348999999999999999
Q ss_pred EEccC--------------------------------------------CCceEEEEccCC-------------------
Q psy5838 107 CQVNT--------------------------------------------NPRISLTYNDHR------------------- 123 (215)
Q Consensus 107 C~~~~--------------------------------------------~~~~~~~~~~~~------------------- 123 (215)
|.+.+ .|.+.+.|....
T Consensus 159 C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~ 238 (363)
T 1wio_A 159 CTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSV 238 (363)
T ss_dssp EEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEE
T ss_pred EEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeec
Confidence 98652 345677773210
Q ss_pred ---------------eEEEEEcccCCCCCeEEEEEeecC---CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEE
Q psy5838 124 ---------------SWFLNIKNVQESDRGWYMCQVNTD---PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185 (215)
Q Consensus 124 ---------------~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C 185 (215)
...|.|.+++.+|+|.|+|.+.+. +.....+.|.|.. ..|+.+.|.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~---------------v~g~~~~l~C 303 (363)
T 1wio_A 239 KRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR---------------ATQLQKNLTC 303 (363)
T ss_dssp EEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---------------ECCCSSSEEE
T ss_pred cccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---------------ecCCCeeEEE
Confidence 237899999999999999999765 4444455555541 1288999999
Q ss_pred EecccCCCe--EEEEeCCCcccccc
Q psy5838 186 KAQGYPEPY--VMWRREDGANLSYN 208 (215)
Q Consensus 186 ~~~~~p~~~--i~W~~~~~~~~~~~ 208 (215)
.+.+.|.|. +.|++ +|..+..+
T Consensus 304 ~~~g~p~p~~~i~W~~-~~~~~~~~ 327 (363)
T 1wio_A 304 EVWGPTSPKLMLSLKL-ENKEAKVS 327 (363)
T ss_dssp EEESSCCTTCCEEEEC-SSSSCSEE
T ss_pred EEccccCCCccEEEEe-CCCceeee
Confidence 999998887 99999 77766543
No 54
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.75 E-value=1.8e-17 Score=143.35 Aligned_cols=157 Identities=24% Similarity=0.466 Sum_probs=117.8
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccce-ec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ-ES 100 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~ 100 (215)
..+....+..|++++|.|.+.+.+.+. +.|+++ +..+ ....+.... .++.|.|.++. .+
T Consensus 531 ~~~~~~~v~~G~~v~l~C~~~g~p~~~-------i~W~k~-~~~l--------~~~~~~~~~----~~~~l~i~~v~~~~ 590 (816)
T 3dmk_A 531 RQMEKKAIVAGETLIVTCPVAGYPIDS-------IVWERD-NRAL--------PINRKQKVF----PNGTLIIENVERNS 590 (816)
T ss_dssp CCCCCEEEETTCCEEEECCEECSSEEE-------EEEEET-TEES--------CCSTTEEEC----TTSEEEESSCCHHH
T ss_pred EccCCeEEecCCeEEEEEEecCCCCCE-------EEEEEC-CeEc--------ccCCceEEe----cCCeEEEEecCccc
Confidence 345567888999999999999877666 999994 4432 122233222 23489999998 69
Q ss_pred CCEEEEEEccC---------------------------------------------CCceEEEEcc--------------
Q psy5838 101 DRGWYMCQVNT---------------------------------------------NPRISLTYND-------------- 121 (215)
Q Consensus 101 d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~-------------- 121 (215)
|+|.|+|.|.+ .+.+.+.|..
T Consensus 591 d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~ 670 (816)
T 3dmk_A 591 DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTS 670 (816)
T ss_dssp HCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEE
T ss_pred cCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEE
Confidence 99999998763 1223556621
Q ss_pred ---CCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEE
Q psy5838 122 ---HRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197 (215)
Q Consensus 122 ---~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W 197 (215)
.....|.|.+++.+|+|.|+|.+.+ .+.....+.+.|..+|.+... +.+..+.+|+.+.|.|.+.|.|.|.+.|
T Consensus 671 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~W 748 (816)
T 3dmk_A 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTW 748 (816)
T ss_dssp EETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEC
T ss_pred EcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeee--cccceecCCCcEEEEEEEecCCCCeEEE
Confidence 1246699999999999999999976 355566677888888887653 3456688999999999999999999999
Q ss_pred EeC
Q psy5838 198 RRE 200 (215)
Q Consensus 198 ~~~ 200 (215)
+++
T Consensus 749 ~k~ 751 (816)
T 3dmk_A 749 KKA 751 (816)
T ss_dssp CEE
T ss_pred Eec
Confidence 994
No 55
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.74 E-value=4.9e-18 Score=135.18 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=117.5
Q ss_pred cccccccCCCcccC-CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCC
Q psy5838 9 VSSVSESLMPHFAE-PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDH 87 (215)
Q Consensus 9 ~~~~~~~~~p~~~~-~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (215)
........+|.|.. ++....+.+|++++|.|.+.+.+.+. +.|+|+ +..+.. ..+.++....
T Consensus 8 ~~~~~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-------v~W~k~-g~~l~~------~~~~~~~~~~--- 70 (404)
T 3p3y_A 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPS-------FHWTRN-SRFFNI------AKDPRVSMRR--- 70 (404)
T ss_dssp -----CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCE-------EEEEET-TEECCG------GGCSSCBCCS---
T ss_pred hHHhhccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCe-------EEEEEC-CEEeee------ecCCcceEec---
Confidence 33445556788774 46788899999999999999887777 999994 433211 1112222221
Q ss_pred ceEEEEEc----cceecCCEEEEEEccC---------------------------------------------CCceEEE
Q psy5838 88 RSWFLNIK----NVQESDRGWYMCQVNT---------------------------------------------NPRISLT 118 (215)
Q Consensus 88 ~~~~l~i~----~~~~~d~G~Y~C~~~~---------------------------------------------~~~~~~~ 118 (215)
..+.|.|. +++.+|+|.|+|.+.+ .|.+.+.
T Consensus 71 ~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~ 150 (404)
T 3p3y_A 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150 (404)
T ss_dssp SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEE
T ss_pred CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEE
Confidence 22345553 7888999999998763 3445666
Q ss_pred EccC--------------CeEEEEEcccCCCC-CeEEEEEeecCCCc----ceeeEEEEEcC-------CeEEecC-CCc
Q psy5838 119 YNDH--------------RSWFLNIKNVQESD-RGWYMCQVNTDPMR----SRQGYLQVVVP-------PSIIDKD-TST 171 (215)
Q Consensus 119 ~~~~--------------~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~----~~~~~l~v~~~-------p~~~~~~-~~~ 171 (215)
|... .+..|.|.+++..| +|.|+|.+.+.... ...+.+.+... |.+.... ...
T Consensus 151 W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~ 230 (404)
T 3p3y_A 151 WMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230 (404)
T ss_dssp EECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEE
T ss_pred EeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCC
Confidence 6321 12358899999999 59999999763221 22244555532 2222111 112
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
...+.+|+.+.|.|.+.+.|.+.+.|++ +|..+..
T Consensus 231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~ 265 (404)
T 3p3y_A 231 SQMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPS 265 (404)
T ss_dssp EEEEETTSCEEEECCBCCSSCCEEEEEE-TTBCCCT
T ss_pred CceEecCCCEEEEEEECCCCCCcEEEEE-CCEECCC
Confidence 4558899999999999999999999999 7766643
No 56
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=125.71 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=102.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.|......+.+.+|++++|.|.+.+. +.|++++.. + ..+......+.....|.|.++
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~-----------v~W~~~~~~-~----------~~~~~~~~~~~~~~~L~i~~~ 58 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP-----------VVWERMSQE-P----------PQEMAKAQDGTFSSVLTLTNL 58 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC-----------CEEEBTTBC-C----------SEEEEECTTSCEEEEEEECSC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce-----------EEEECCCCC-c----------ccceeccCCCceeEEEEEccC
Confidence 445555667889999999999998742 779995433 2 111111111222468999999
Q ss_pred eecCCEEEEEEccC--------------------------------------------------CCceEEEEccCC----
Q psy5838 98 QESDRGWYMCQVNT--------------------------------------------------NPRISLTYNDHR---- 123 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~--------------------------------------------------~~~~~~~~~~~~---- 123 (215)
+.+|+|.|+|.+.+ .+.+.|.|....
T Consensus 59 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~ 138 (289)
T 3mjg_X 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALP 138 (289)
T ss_dssp CGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCC
T ss_pred ChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccc
Confidence 99999999999864 122333332200
Q ss_pred -eEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc--CCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEE
Q psy5838 124 -SWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV--PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198 (215)
Q Consensus 124 -~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~ 198 (215)
.......-+...|+|.|+|.+.+... .+....+.|.. +|.+... +....+.+|+++.|.|.+.+.|.+.+.|+
T Consensus 139 ~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~v~W~ 216 (289)
T 3mjg_X 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWT 216 (289)
T ss_dssp CCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEE--ESCSEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred eeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEe--CCcceeEcCCCEEEEEEECCCCCcceEEE
Confidence 00000001135789999999975332 23334566654 4544432 23356889999999999999999999999
Q ss_pred eCCCc
Q psy5838 199 REDGA 203 (215)
Q Consensus 199 ~~~~~ 203 (215)
+ +++
T Consensus 217 ~-~~~ 220 (289)
T 3mjg_X 217 Y-PRK 220 (289)
T ss_dssp C-TTS
T ss_pred c-CCc
Confidence 7 443
No 57
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.74 E-value=6.5e-17 Score=122.07 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=105.3
Q ss_pred EEEeCCcEEEEEEeec-cCCc--cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc---eecC
Q psy5838 28 TVTVGRDALLACVVDN-LKGF--KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV---QESD 101 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~-~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d 101 (215)
.+.+|++++|.|.+.+ .+.+ . +.|+++ +..+.. .....+ ..+.+..+ +.+|
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~-------v~W~k~-~~~l~~------------~~~~~~---~~~~~~~~~~~~~~d 70 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQ-------VHLALG-DQRLNP------------TVTYGN---DSFSAKASVSVTAED 70 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCE-------EEEEET-TEECCC------------EEEECS---SEEEEEEEEEECGGG
T ss_pred eEecCCCEEEEEEccCCCCCcceE-------EEEEeC-CEECCc------------eEeeCC---CeEEEEeeccccccc
Confidence 6789999999999998 5554 5 999995 433210 111111 13333333 6677
Q ss_pred CEE--EEEEccC----------------------------------------CCceEEEEccC-------CeEEEEEccc
Q psy5838 102 RGW--YMCQVNT----------------------------------------NPRISLTYNDH-------RSWFLNIKNV 132 (215)
Q Consensus 102 ~G~--Y~C~~~~----------------------------------------~~~~~~~~~~~-------~~~~l~i~~~ 132 (215)
+|. |+|.+.+ .|.+.+.| +. ....|.+..+
T Consensus 71 ~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~p~~~i~W-~g~~~~~~~~~~~l~i~~~ 149 (265)
T 2oz4_A 71 EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL-NGVPAQPLGPRAQLLLKAT 149 (265)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECCTTSEEEE-SSCSSSCCSSEECCEEECC
T ss_pred CCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEccCCCEEEE-CCEEccCCCCcEEEEEccc
Confidence 774 8887652 25566667 32 2455888899
Q ss_pred CCCCCeEEEEEeec-C-CCcc---eeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCc
Q psy5838 133 QESDRGWYMCQVNT-D-PMRS---RQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203 (215)
Q Consensus 133 ~~~d~G~Y~C~~~~-~-~~~~---~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 203 (215)
..+|.|.|+|.+.+ . +... ..+.|.|..+|.+.....+....+.+|+.+.|.|.+.|+|.|.+.|++ +|.
T Consensus 150 ~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~-~~~ 224 (265)
T 2oz4_A 150 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGT 224 (265)
T ss_dssp GGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTT
T ss_pred cccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEE-CCc
Confidence 99999999999963 2 3333 556788888887755434456678999999999999999999999999 655
No 58
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=117.71 Aligned_cols=139 Identities=27% Similarity=0.463 Sum_probs=92.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.|...+....+.+|++++|.|.+.+.+.+. +.|++++ ..+.. ....++....+ +.
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~~-~~~~~------~~~~~~~~~~~----~~----- 58 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHN-EEVTT------ISDNRFAMLAN----NN----- 58 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCE-------EEEEC------CB------CCCTTEEECTT----SC-----
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCE-------EEEEECC-cccee------ccCCeEEEecC----CC-----
Confidence 57888888999999999999999999877776 9999954 32211 11223322111 12
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-C--cceeeEEEEEcCCeEEecCCCcce
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-M--RSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
|.|.+++.+|+|.|+|.+.+.. . ....+.+.+..+|.+.........
T Consensus 59 ------------------------------L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~ 108 (189)
T 2v5t_A 59 ------------------------------LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108 (189)
T ss_dssp ------------------------------EEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEE
T ss_pred ------------------------------EEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccc
Confidence 5566667777777777775432 1 123345666667766643333345
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeCCCccccccC
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
.+.+|+.+.|.|.+.+.|.+.+.|++ +|..+....
T Consensus 109 ~~~~g~~v~l~C~~~g~p~~~v~W~~-~g~~~~~~~ 143 (189)
T 2v5t_A 109 TAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENE 143 (189)
T ss_dssp ETTSCCCEEEECEEEEESCCEEEEEE-TTEECCCSS
T ss_pred cccCCCcEEEEEEEccCCCCeEEEEE-CCEECcCCC
Confidence 57789999999999999999999999 777766443
No 59
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.74 E-value=1.8e-17 Score=120.69 Aligned_cols=78 Identities=24% Similarity=0.496 Sum_probs=58.1
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCC
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~ 202 (215)
.+.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..||.+... +....+.+|+.+.|.|.+.|.|.|.+.|+++++
T Consensus 68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~--~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~ 145 (203)
T 4fa8_A 68 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 145 (203)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE--EEECCSSCSCCEEEEEEEEEESCCEEEECCC--
T ss_pred EEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeec--ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCe
Confidence 345888888888889999988653 34455567888777766542 345557899999999999999999999998554
Q ss_pred c
Q psy5838 203 A 203 (215)
Q Consensus 203 ~ 203 (215)
.
T Consensus 146 ~ 146 (203)
T 4fa8_A 146 V 146 (203)
T ss_dssp -
T ss_pred e
Confidence 4
No 60
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.74 E-value=2.2e-16 Score=115.29 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=95.3
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEE-EcCCceEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLT-YNDHRSWFLN 93 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 93 (215)
..+|.|...+....+.+|+++.|.|.+.+.+.+. +.|+++ +..+ ...+.... ..+.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-------v~W~k~-~~~~---------~~~~~~~~~~~~~------ 60 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPK-------IVWNKK-GKKV---------SNQRFEVIEFDDG------ 60 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEET-TEEC---------CCTTEEEEEEGGG------
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCE-------EEEEEC-CcCC---------CCCceeEEEEcCC------
Confidence 3468898889999999999999999999887776 999994 3322 11222111 1111
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEccc-CCCCCeEEEEEeecC-CCcceeeEEEEEcC-------CeE
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNV-QESDRGWYMCQVNTD-PMRSRQGYLQVVVP-------PSI 164 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-------p~~ 164 (215)
....|.|.++ +.+|+|.|+|.+.+. +.....+.|.|..+ |.+
T Consensus 61 -----------------------------~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~ 111 (212)
T 2yd6_A 61 -----------------------------SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI 111 (212)
T ss_dssp -----------------------------TEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEE
T ss_pred -----------------------------CceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCccee
Confidence 1234667777 478888888888653 33344556777653 344
Q ss_pred EecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
.. .+....+..|+.+.|.|.+.|.|.+.+.|++ +|..+..
T Consensus 112 ~~--~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~g~~l~~ 151 (212)
T 2yd6_A 112 DM--GPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDT 151 (212)
T ss_dssp EE--CCCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEEC--
T ss_pred ec--CCcceeEecCCCEEEEEEecCCCCCeEEEEE-CCccccC
Confidence 33 2344567899999999999999999999999 7776654
No 61
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.74 E-value=4.1e-17 Score=116.97 Aligned_cols=138 Identities=28% Similarity=0.452 Sum_probs=97.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ..+.++.+...+
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~-------i~W~~~-~~~~~-------~~~~~~~~~~~~--------- 61 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPE-------ISWTRN-KILIK-------LFDTRYSIRENG--------- 61 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESCCE-------EEEEET-TEECC-------TTCTTEEEEGGG---------
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCCCe-------EEEEEC-CEEcc-------ccCccEEEcCCc---------
Confidence 357888888899999999999999999877776 999994 33221 112333332211
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-C-cceeeEEEEEcCCeEEecCCCcce
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-M-RSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~-~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
..|.|.+++.+|+|.|+|.+.+.. . ......+.|..+|.+... +...
T Consensus 62 -----------------------------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~ 110 (192)
T 2iep_A 62 -----------------------------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP--PINV 110 (192)
T ss_dssp -----------------------------TEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC--CCCE
T ss_pred -----------------------------cEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC--Ccce
Confidence 125677777777888888876532 2 234456777777777653 3455
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeCCCccccccC
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
.+..|+.+.|.|.+.+.|.+.+.|++ ++..+....
T Consensus 111 ~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~ 145 (192)
T 2iep_A 111 KIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENS 145 (192)
T ss_dssp EEETTSCEEECCEEEEESCCEEEEEE-TTEECCCCS
T ss_pred EEeCCCcEEEEEEEeccCCceEEEEe-CCEEccCCC
Confidence 68899999999999999999999999 777665443
No 62
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.73 E-value=2.2e-16 Score=131.64 Aligned_cols=169 Identities=20% Similarity=0.310 Sum_probs=112.2
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc----cEEEeeec-eeeeCCceEEEEc-CCceEEEEEc
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ----TILSIHHN-VITQNPRISLTYN-DHRSWFLNIK 95 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~i~ 95 (215)
..|..+.+.+|++++|.|.+.+.+.+.... +.|+|++.. .++..... .....+|+.+... ......|.|.
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~----v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~ 80 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTR----KYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIA 80 (585)
T ss_pred cCcceeEEecCCcEEEEEeCCCCcCCCccc----EEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEEC
Confidence 346688999999999999999875542222 899996432 12211100 1123356666543 3355689999
Q ss_pred cceecCCEEEEEEccC-------------------------------------------CCceEEEEccCC---------
Q psy5838 96 NVQESDRGWYMCQVNT-------------------------------------------NPRISLTYNDHR--------- 123 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~-------------------------------------------~~~~~~~~~~~~--------- 123 (215)
+++.+|+|.|+|.+.+ .+...+.|....
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~ 160 (585)
T 2ocw_A 81 QLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID 160 (585)
T ss_pred CCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEec
Confidence 9999999999999762 123445552210
Q ss_pred -----------------------eEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceeeecCC
Q psy5838 124 -----------------------SWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179 (215)
Q Consensus 124 -----------------------~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~ 179 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..++ +..+.+.+|+
T Consensus 161 ~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------p~~~~~~~G~ 233 (585)
T 2ocw_A 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-------PELVYEDLRG 233 (585)
T ss_pred CCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-------CceeEEcCCC
Confidence 12689999999999999999975 3444556667776543 2234467899
Q ss_pred cEEEEEEecccC-C-CeEEEE-eCCC
Q psy5838 180 NVTLNCKAQGYP-E-PYVMWR-REDG 202 (215)
Q Consensus 180 ~~~l~C~~~~~p-~-~~i~W~-~~~~ 202 (215)
.+.|.|.+.+.+ . +.+.|+ + +|
T Consensus 234 ~v~l~C~~~~~~~~~~~~~w~~~-~g 258 (585)
T 2ocw_A 234 SVTFHCALGPEVANVAKFLCRQS-SG 258 (585)
T ss_pred cEEEEEEcCCCCCCceEEEEEeC-CC
Confidence 999999974332 2 578887 6 66
No 63
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.73 E-value=1.6e-17 Score=131.99 Aligned_cols=165 Identities=26% Similarity=0.383 Sum_probs=114.9
Q ss_pred CceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCC--ccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecC
Q psy5838 25 PNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDT--QTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD 101 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 101 (215)
....+.+|+++.|.|.+ .+.+.+. +.|++++. ..... ....+.++.... .+.|.|.+++.+|
T Consensus 108 ~~~~~~~G~~v~l~C~~~~~~p~~~-------v~W~~~~~~~~~~~~----~~~~~~~~~~~~----~~~L~i~~v~~~d 172 (395)
T 1bih_A 108 HEKTPIEGRPFQLDCVLPNAYPKPL-------ITWKKRLSGADPNAD----VTDFDRRITAGP----DGNLYFTIVTKED 172 (395)
T ss_dssp EEECCBTTEEEEECCCCCEEESCCE-------EEEEEEETTSCGGGC----CCCCCTTEEECT----TSCEEEEEECGGG
T ss_pred cceeeeeCCcEEEEecCCCCCCCCe-------EEEEecCCCcCcccc----cccccccEEEcC----CCcEEEEEEeecc
Confidence 35667799999999997 6667676 99999531 11100 000123333322 3379999999999
Q ss_pred CE---EEEEEccC-----------------------------------------------------CCceEEEEccC---
Q psy5838 102 RG---WYMCQVNT-----------------------------------------------------NPRISLTYNDH--- 122 (215)
Q Consensus 102 ~G---~Y~C~~~~-----------------------------------------------------~~~~~~~~~~~--- 122 (215)
+| .|+|.+.+ .|.+.+.|...
T Consensus 173 ~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~ 252 (395)
T 1bih_A 173 VSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252 (395)
T ss_dssp CCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE
T ss_pred CCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEE
Confidence 99 99998763 12222333111
Q ss_pred ---------------CeEEEEEcccCCCCCeEEEEEeecC-CCcc-eeeEEEEEcCCeEEecCCCcceeeecCCcEEEEE
Q psy5838 123 ---------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRS-RQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185 (215)
Q Consensus 123 ---------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C 185 (215)
....|.|.+++.+|+|.|+|.+.+. +... ..+.|.|..+|.+.... .....+.+|+.+.|.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~~~l~C 331 (395)
T 1bih_A 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP-EKVIVVKQGQDVTIPC 331 (395)
T ss_dssp CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECC-CSEEEECTTSCEEEEC
T ss_pred cCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCC-CcceEecCCCeEEEEE
Confidence 0126999999999999999999764 3323 36778898888877542 2225688999999999
Q ss_pred EecccCCCeEEEEeCCCcccc
Q psy5838 186 KAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 186 ~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.+.|.|.|.+.|++ +|..+.
T Consensus 332 ~~~g~p~p~v~W~~-~g~~~~ 351 (395)
T 1bih_A 332 KVTGLPAPNVVWSH-NAKPLS 351 (395)
T ss_dssp EEEEESCCCCEEEE-TTEECC
T ss_pred EECcccCCeeEEEE-CCEECC
Confidence 99999999999999 777764
No 64
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=127.28 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=113.8
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|++++|.|.+.+. +.|++.... +.... .......|.|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-----------v~W~~~~~~--------------~~~~~-~~~~~~~L~i~ 56 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-----------VEWDGPPSP--------------HWTLY-SDGSSSILSTN 56 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC-----------CCBCCCCCS--------------SCEEC-CBTTEEEEEES
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc-----------eEEccCCCC--------------ceEEe-ccCceEEEEEc
Confidence 36888888889999999999999998752 668864321 11111 11245689999
Q ss_pred cceecCCEEEEEEccC------------------------------------------CCc--eEEEEccC---------
Q psy5838 96 NVQESDRGWYMCQVNT------------------------------------------NPR--ISLTYNDH--------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~------------------------------------------~~~--~~~~~~~~--------- 122 (215)
+++.+|+|.|+|.+.+ .+. +.+.|...
T Consensus 57 ~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~ 136 (292)
T 4dkd_C 57 NATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT 136 (292)
T ss_dssp SCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSC
T ss_pred ccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCC
Confidence 9999999999999874 111 33445211
Q ss_pred -----CeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc----CCeEEecCCCcceeeecCCcEEEEEEecccC
Q psy5838 123 -----RSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV----PPSIIDKDTSTDLVVREQANVTLNCKAQGYP 191 (215)
Q Consensus 123 -----~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 191 (215)
.+..|.|.+++.+|+|.|+|.+.+... .+..+.+.|.. +|.+... +....+.+|+.+.|.|.+.+.|
T Consensus 137 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~v~l~C~~~~~~ 214 (292)
T 4dkd_C 137 NYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLV--PAELVRIRGEAAQIVCSASSVD 214 (292)
T ss_dssp CEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEE--SSCBCCCSSSCEEEEEEEEESS
T ss_pred cccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEcc--CCceeEecCCCEEEEEEecCCC
Confidence 122389999999999999999975432 23466788876 7777654 3334457999999999999876
Q ss_pred C-CeEEEEeCCCcccc
Q psy5838 192 E-PYVMWRREDGANLS 206 (215)
Q Consensus 192 ~-~~i~W~~~~~~~~~ 206 (215)
+ +.+.|++ ++..+.
T Consensus 215 ~~~~~~w~~-~~~~~~ 229 (292)
T 4dkd_C 215 VNFDVFLQH-NNTKLA 229 (292)
T ss_dssp SCCEEECCB-SSCCCC
T ss_pred CceEEEEeC-CCcccc
Confidence 5 4688988 665444
No 65
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.72 E-value=1.5e-16 Score=124.64 Aligned_cols=172 Identities=17% Similarity=0.365 Sum_probs=108.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEE---Eeeec------eeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTIL---SIHHN------VITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~---~~~~~------~~~~~~~~~~~~~-~~~~~ 90 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +..+. ..... ......|+.+..+ ....+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHA-------IHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTA 79 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSC-------EEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEE
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccE-------EEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEE
Confidence 4568899999999999998763 344 9999963 33221 11100 0012467777654 23568
Q ss_pred EEEEccceecCCEEEEEEccC-----------------------------------------------CCc-eEEEEccC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT-----------------------------------------------NPR-ISLTYNDH 122 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~-----------------------------------------------~~~-~~~~~~~~ 122 (215)
.|.|.+++.+|+|.|+|.+.+ .|. +.+.|...
T Consensus 80 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~ 159 (344)
T 1za6_B 80 YVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG 159 (344)
T ss_dssp EEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTT
T ss_pred EEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecC
Confidence 999999999999999999763 122 45666321
Q ss_pred C--------------------eEEEEEcccCCCCCeEEEEEeecCCCc-ceeeEEE------------------------
Q psy5838 123 R--------------------SWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQ------------------------ 157 (215)
Q Consensus 123 ~--------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~------------------------ 157 (215)
. ...|.|..+..+| |.|+|.+.+.... .....+.
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 238 (344)
T 1za6_B 160 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG 238 (344)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------
T ss_pred CccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence 1 1247777777777 9999999764321 1111111
Q ss_pred EEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCcccc
Q psy5838 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLS 206 (215)
Q Consensus 158 v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~ 206 (215)
+..+|.+........ ...|+.+.|.|.+.|+ |+ +.+.|++ ||..+.
T Consensus 239 ~~~~P~v~~~~~~~~--~~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~~~ 286 (344)
T 1za6_B 239 QPREPQVYTLPPSRD--ELTKNQVSLTCLVKGFYPSDIAVEWES-NGQPEN 286 (344)
T ss_dssp CCBCCEEEEECCCGG--GGGSSSEEEEEEEEEEBSSCCEEEEES-SSSCCC
T ss_pred CCcCCEEEEeCCChH--hccCCcEEEEEEEeeEECCCeEEEEEE-CCeECC
Confidence 124555544322211 2346779999999985 43 5899999 777664
No 66
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.71 E-value=5.3e-17 Score=130.77 Aligned_cols=160 Identities=20% Similarity=0.365 Sum_probs=104.6
Q ss_pred EeCCcEEEEEEeec-cCCc-cceeeeEEEEEEecCCccEEEe----eeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 30 TVGRDALLACVVDN-LKGF-KGLRIGWQVAWVRVDTQTILSI----HHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 30 ~~G~~v~L~C~~~~-~~~~-~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
..|+.+.|.|.+.+ .+.+ . +.|++ ++..+... .......+..+. ....|.|.++..+|+|
T Consensus 129 ~~g~~~~l~C~~~g~~p~~~~-------v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G 194 (438)
T 1qgc_4 129 LTSGGASVVCFLNNFYPKDIN-------VKWKI-DGSERQNGVLNSWTDQDSKDSTYS------MSSTLTLTKDEYERHN 194 (438)
T ss_dssp HHTTEEEEEEEEEEEBSSCEE-------EEEEE-TTEEECTTEEEEEECCCTTTCCEE------EEEEEEEEHHHHHTCC
T ss_pred ccCCceEEEEEEccccCCCcE-------EEEEE-CCEEcCCCceeccccccCCCCcEE------EEEEEEEeCcccCCCC
Confidence 35889999999987 4555 5 99999 55443211 000000111111 1347999999999999
Q ss_pred EEEEEccC------------------------------------------CC--ceEEEEccC-----------------
Q psy5838 104 WYMCQVNT------------------------------------------NP--RISLTYNDH----------------- 122 (215)
Q Consensus 104 ~Y~C~~~~------------------------------------------~~--~~~~~~~~~----------------- 122 (215)
.|+|.|.+ .| .+.+.|...
T Consensus 195 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~ 274 (438)
T 1qgc_4 195 SYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGT 274 (438)
T ss_dssp EEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSC
T ss_pred eEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCC
Confidence 99998762 22 334555221
Q ss_pred --------------------CeEEEEEcccCCCCCeEEEEEeecC-C-----CcceeeEEEEEc----CCeEEecCCCcc
Q psy5838 123 --------------------RSWFLNIKNVQESDRGWYMCQVNTD-P-----MRSRQGYLQVVV----PPSIIDKDTSTD 172 (215)
Q Consensus 123 --------------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~-----~~~~~~~l~v~~----~p~~~~~~~~~~ 172 (215)
....|.|.+++.+|+|.|+|.+.+. + .......+.|.. +|.+..... .
T Consensus 275 ~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~ 352 (438)
T 1qgc_4 275 YTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAP--G 352 (438)
T ss_dssp CEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECC--C
T ss_pred ceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCc--c
Confidence 1237999999999999999999752 1 222345666662 455443322 2
Q ss_pred eeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 173 LVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 173 ~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
..+.+|+.+.|.|.+.|. |.+ .+.|++ +|..+.
T Consensus 353 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~~~ 387 (438)
T 1qgc_4 353 SAAAAASMVTLGCLVKGYFPEPVTVTWNS-GSLSSG 387 (438)
T ss_dssp GGGCCSSEEEEEEEEESCBSSCCEEEEGG-GTCCSS
T ss_pred cccccCCcEEEEEEeccccCCCcEEEEec-CCCCCc
Confidence 235679999999999996 888 899999 776654
No 67
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.71 E-value=2.8e-16 Score=120.61 Aligned_cols=144 Identities=22% Similarity=0.335 Sum_probs=99.4
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++.........
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~-------v~W~~~-~~~~~-------~~~~~~~~~~~~~~~------ 61 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPI-------VKWYRQ-GKEII-------ADGLKYRIQEFKGGY------ 61 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCE-------EEEEET-TEECC-------CCSSSEEEEEETTTE------
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCe-------EEEEEC-CEEcc-------cCCCeEEEEECCCCE------
Confidence 468899889999999999999999999887776 999994 43321 112233322211111
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecC---CCc
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKD---TST 171 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~---~~~ 171 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+.... ...
T Consensus 62 -----------------------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~ 112 (305)
T 2nzi_A 62 -----------------------------HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112 (305)
T ss_dssp -----------------------------EEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSC
T ss_pred -----------------------------EEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccc
Confidence 24667777777888888887553 333455567776666543211 123
Q ss_pred ceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
...+..|+.+.|.|.+.+.|.+.+.|++ ++..+....+
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~ 150 (305)
T 2nzi_A 113 AVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGH 150 (305)
T ss_dssp CEEEETTCCEEEEEEEEEESCCEEEEEE-SSSBCCSSSS
T ss_pred cEEecCCCEEEEEEEECCCCCCEEEEEE-CCEECCCCCc
Confidence 4567899999999999999999999999 7777665443
No 68
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.70 E-value=8.8e-17 Score=130.03 Aligned_cols=157 Identities=23% Similarity=0.326 Sum_probs=105.6
Q ss_pred eEEEeCCcEEEEEEeecc-C--CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 27 VTVTVGRDALLACVVDNL-K--GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~-~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
..+.+|+++.|.|.+.+. | .+. +.|++++ ..+. .++.... +.....+.+ +++.+|+|
T Consensus 198 ~~v~~G~~v~l~C~~~g~~P~~~~~-------~~W~~~~-~~~~----------~~~~~~~-~~~~~~~~~-~v~~~d~G 257 (450)
T 1z7z_I 198 RVLEVDTQGTVVCSLDGLFPVSEAQ-------VHLALGD-QRLN----------PTVTYGN-DSFSAKASV-SVTAEDEG 257 (450)
T ss_dssp SEEETTSEEEEEEEEESCTTGGGCE-------EEEEETT-EECC----------CEEEEET-TEEEEEEEE-ECCGGGCE
T ss_pred eeEEeCCcEEEEEEeeCCCCCCceE-------EEEeCCC-EeCC----------ceEEecC-CceeEEEEE-EeEhhhCC
Confidence 678899999999999987 4 344 9999954 3221 1111111 101112222 67899999
Q ss_pred --EEEEEccCC----------------------------------------CceEEEEcc------CCeEEEEEcccCCC
Q psy5838 104 --WYMCQVNTN----------------------------------------PRISLTYND------HRSWFLNIKNVQES 135 (215)
Q Consensus 104 --~Y~C~~~~~----------------------------------------~~~~~~~~~------~~~~~l~i~~~~~~ 135 (215)
.|+|.+.+. |.+.+.|.. .....|.|..++.+
T Consensus 258 ~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~ 337 (450)
T 1z7z_I 258 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337 (450)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC----------------CCCCCEEEECCGGG
T ss_pred cEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEECCEEcCCCCceEEEEEecCccc
Confidence 999988642 222334411 12235889999999
Q ss_pred CCeEEEEEeec-CC-C---cceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcc
Q psy5838 136 DRGWYMCQVNT-DP-M---RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGAN 204 (215)
Q Consensus 136 d~G~Y~C~~~~-~~-~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~ 204 (215)
|+|.|+|.+.+ .+ . ....+.|.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.+.|++ +|..
T Consensus 338 d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~-~g~~ 410 (450)
T 1z7z_I 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-DGTF 410 (450)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEE-TTTE
T ss_pred CCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEE-CCcc
Confidence 99999999964 22 2 23556788888888776534456678999999999999999999999999 6653
No 69
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.70 E-value=9.8e-16 Score=112.90 Aligned_cols=145 Identities=22% Similarity=0.405 Sum_probs=87.2
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceee--------eCCceEEEEcCCceEEEE
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT--------QNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~ 93 (215)
.+++++.+.+|++|+|.|.+.+.+.+.... +.|+|++....+....+... ...|+.......
T Consensus 9 ~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~----V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~------ 78 (226)
T 4f80_A 9 GPSGPILAMVGEDADLPCHLFPTMSAETME----LKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI------ 78 (226)
T ss_dssp CCSSCEEEETTSCEEEEEEEESCCCCTTSE----EEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTG------
T ss_pred CCCCCEEEEcCCcEEEEEEEECCCCCCceE----EEEEECCCCceEEEEeCCeEcccccCccccceEEEecccc------
Confidence 455679999999999999998765554333 89999665444332211100 011222211110
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcce
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
...+..|.|.+++.+|+|.|+|.+.+.. ......+.+..++.... .....
T Consensus 79 ---------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~-~~~~~~v~~~~~~~~~~--~~~~~ 128 (226)
T 4f80_A 79 ---------------------------TAGKAALRIHNVTASDSGKYLCYFQDGD-FYEKALVELKVAALGSD--LHVDV 128 (226)
T ss_dssp ---------------------------GGTEEEEEESSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCCC--CEEEE
T ss_pred ---------------------------cCCeEEEEEeeCchHHCeeEEEEEECCC-cEEEEEEEEeeccceec--cccee
Confidence 0123457777788888888888876532 22233444443332221 22344
Q ss_pred eeecCCcEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 174 VVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
.+.+|..+.|.|.+.+ .|.|.+.|+++++..+.
T Consensus 129 ~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~ 162 (226)
T 4f80_A 129 KGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162 (226)
T ss_dssp EEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred eeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence 5778999999999988 59999999996665544
No 70
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.69 E-value=7.9e-16 Score=121.99 Aligned_cols=141 Identities=24% Similarity=0.356 Sum_probs=97.2
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
|.|.. +.+..+.+|++++|.|.+.+.+.+. +.|+|+. +..+... ....+.++.+.... .
T Consensus 2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~-------v~W~~~~~g~~~~~~---~~~~~~~~~~~~~~-~-------- 61 (389)
T 2jll_A 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPE-------ITWKRAVDGFTFTEG---DKSLDGRIEVKGQH-G-------- 61 (389)
T ss_dssp CEEEE-CCCEEEETTSEEEEEEEEECSSCCE-------EEEEETTTTEEECC-----CCSSSSEEEEECS-S--------
T ss_pred CeEEe-cCceEEeCCCeEEEEEEeecccCCe-------EEEEeCCCCceeccC---cCCCCCeEEEeccC-C--------
Confidence 66666 4567888999999999999988887 9999952 4433110 00113344333221 1
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeEEecCCCcceee
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSIIDKDTSTDLVV 175 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~ 175 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.+.. ......+
T Consensus 62 ---------------------------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~--~~~~~~~ 112 (389)
T 2jll_A 62 ---------------------------SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS--NQTIYYS 112 (389)
T ss_dssp ---------------------------EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECC--SCCEEEE
T ss_pred ---------------------------cceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEec--CcceEEe
Confidence 23466777777788888888765 34445667788888887764 2333457
Q ss_pred ecCCcEEEEEEecccCCCeEEEEeCCCcccccc
Q psy5838 176 REQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 176 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
.+|+.+.|.|.+.|.|.+.+.|++ +|..+...
T Consensus 113 ~~g~~~~l~C~~~g~p~~~i~W~~-~g~~l~~~ 144 (389)
T 2jll_A 113 WEGNPINISCDVKSNPPASIHWRR-DKLVLPAK 144 (389)
T ss_dssp CTTCCEEEEECEEEESCCEEEEEE-TTEESSCT
T ss_pred ccCCEEEEEEEEEecCCCeEEEEE-CCccCCcc
Confidence 899999999999999999999999 77776544
No 71
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.69 E-value=8e-16 Score=112.19 Aligned_cols=143 Identities=19% Similarity=0.307 Sum_probs=88.3
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l 92 (215)
|.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|.. +.. .+....... ....|+.....
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------- 67 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSY-------LAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGS------- 67 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-------
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCce-------EEEEEECCCCCcEEEEEeCCccCCCCCccEEEecC-------
Confidence 4566667789999999999999999887666 9999953 221 111100000 01233333211
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----cceeeEEEEE---cCCeEE
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----RSRQGYLQVV---VPPSII 165 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~---~~p~~~ 165 (215)
.....|.|.+++.+|+|.|+|.+.+... ......+.|. .+|.+.
T Consensus 68 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~ 118 (213)
T 3nl4_L 68 -----------------------------GTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVL 118 (213)
T ss_dssp -----------------------------TTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEE
T ss_pred -----------------------------CCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEE
Confidence 1223466777777777777777754321 2233445553 345554
Q ss_pred ecCCCcceeeecCCcEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy5838 166 DKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206 (215)
Q Consensus 166 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~ 206 (215)
... ....+.+|+.+.|.|.+.+ .|.+.+.|++ +|..+.
T Consensus 119 ~~~--~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k-~g~~~~ 157 (213)
T 3nl4_L 119 IFP--PSADLVATGTVTIVCVANKYFPDVTVTWEV-DGTTQT 157 (213)
T ss_dssp EEC--CCHHHHTTSEEEEEEEEEEEBSCCEEEEEE-TTEECC
T ss_pred EeC--CchhhccCCcEeEEEEEecccCCcEEEEEe-CCccCC
Confidence 322 2223457999999999988 8988999999 777664
No 72
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.69 E-value=1.1e-15 Score=111.03 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=94.8
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEee-ecee--eeCCceEEEEcCCceEEEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH-HNVI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+.|...+..+.+.+|+++.|.|.+.+.+.+. +.|++++........ .... ....|+....
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---------- 64 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPR-------VEWKFVQGSTTALVCYNSQITAPYADRVTFSS---------- 64 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEE-------EEEEEEETTEEEEEEETTEECGGGTTTEEEET----------
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcE-------EEEEECCCceeeEEecCCcccccccCcEEeec----------
Confidence 4566778899999999999999999876666 999996544211100 0000 0111221110
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-C--CcceeeEEEEEcCCeEEecCCCc
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-P--MRSRQGYLQVVVPPSIIDKDTST 171 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~ 171 (215)
..|.|.+++.+|+|.|+|.+.+. + .....+.+.|..+|.+.....
T Consensus 65 ------------------------------~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-- 112 (212)
T 1f97_A 65 ------------------------------SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-- 112 (212)
T ss_dssp ------------------------------TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC--
T ss_pred ------------------------------eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC--
Confidence 24778888888888899988653 2 334556788888877654322
Q ss_pred ceeeecCCcEEEEEE-ecccCCCeEEEEeCCCc-cccc
Q psy5838 172 DLVVREQANVTLNCK-AQGYPEPYVMWRREDGA-NLSY 207 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~~-~~~~ 207 (215)
...+.+|+.+.|.|. +.+.|.+.+.|++ ++. .+..
T Consensus 113 ~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~l~~ 149 (212)
T 1f97_A 113 PSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTA 149 (212)
T ss_dssp CSEEETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC-
T ss_pred ccccCCCCeEEEEEEcccCcCCCEEEEEe-CCcccccc
Confidence 345789999999999 6899999999999 776 6654
No 73
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.68 E-value=6.7e-16 Score=113.17 Aligned_cols=147 Identities=24% Similarity=0.351 Sum_probs=90.5
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCccEEEeeeceee-------eCCceEEEEcCCceE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQTILSIHHNVIT-------QNPRISLTYNDHRSW 90 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 90 (215)
+..++..+.+.+|++++|.|.+.+.+.. .... +.|+|++ ..+......... ...|..+..+.
T Consensus 4 v~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~----v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~---- 74 (222)
T 3sbw_C 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALI----VYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQ---- 74 (222)
T ss_dssp CBCSCSEEEEETTSCEEEEEECCCCSSCCTTTCE----EEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHH----
T ss_pred EecCCccEEEEcCCcEEEEeEecCCCCCCCccEE----EEEEECC-cEEEEEeCCccccccccccccCceEEcccc----
Confidence 3455677889999999999998755422 1122 8999954 333222111100 01222221110
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTS 170 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~ 170 (215)
....+..|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++..... .
T Consensus 75 -----------------------------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~--~ 123 (222)
T 3sbw_C 75 -----------------------------LSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQ--R 123 (222)
T ss_dssp -----------------------------HTTTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEE--E
T ss_pred -----------------------------ccCCEEEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCc--e
Confidence 001224577888888888888888876444455667778766543321 1
Q ss_pred cceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 171 TDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
....+..|+.+.|.|.+.|.|.|.+.|+++++..+.
T Consensus 124 ~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~ 159 (222)
T 3sbw_C 124 ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159 (222)
T ss_dssp EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence 112467899999999999999999999995466554
No 74
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.68 E-value=2.5e-15 Score=109.55 Aligned_cols=143 Identities=22% Similarity=0.323 Sum_probs=90.3
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-C-ccE-EEeeece--eeeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-T-QTI-LSIHHNV--ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l 92 (215)
|.+..++ .+.+.+|++|+|.|.+.+.+.+. +.|+|.. + ... +...... ....+|+.....
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------- 66 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVY-------VHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNS------- 66 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSC-------EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-------
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCce-------EEEEEECCCCCcEEEEEECCccCCCccCcEEEEec-------
Confidence 4566677 89999999999999999777776 9999842 1 111 1110000 001223332221
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC----CcceeeEEEEE----cCCeE
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVV----VPPSI 164 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~----~~p~~ 164 (215)
.....|.|.+++.+|+|.|.|.+.+.. .......+.|. .+|.+
T Consensus 67 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i 117 (213)
T 3mj8_L 67 -----------------------------GNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSV 117 (213)
T ss_dssp -----------------------------TTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEE
T ss_pred -----------------------------CCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeE
Confidence 123456777777778888888875532 23445667777 56666
Q ss_pred EecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCccccc
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLSY 207 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 207 (215)
..... ...+.+|+.+.|.|.+.+. |+ +.+.|++ +|..+..
T Consensus 118 ~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~ 159 (213)
T 3mj8_L 118 TLFPP--SSEELKTNQATLVCMINGFYPADVAVTWEA-DGTPITQ 159 (213)
T ss_dssp EEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred EccCC--CcccccCCcEEEEEEeeceeCCCeEEEEEc-CCcccCC
Confidence 55322 2223489999999999885 44 3899999 7877653
No 75
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.68 E-value=1.3e-15 Score=111.04 Aligned_cols=135 Identities=17% Similarity=0.302 Sum_probs=83.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcC-CceEEEEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND-HRSWFLNI 94 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i 94 (215)
.|.|..+. .+.+.+|+.+.|.|.+.. .|.+. +.|++ ++..+ ....++.+..+. .....
T Consensus 3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~-------i~W~k-ng~~l--------~~~~~~~~~~~~~~g~~~--- 62 (207)
T 3rbs_A 3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAK-------VNYIF-NEKEI--------FEGPKYKMHIDRNTGIIE--- 62 (207)
T ss_dssp ---CCEEE-EEEECGGGCEEEEEECSCCCSCCE-------EEEEE-TTEEE--------CSSSSCEEEECTTTCEEE---
T ss_pred CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCE-------EEEEE-CCEEC--------ccCCCEEEEEeCCCCEEE---
Confidence 45665544 688999999999999864 56776 99999 55544 223344444322 12223
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEE---------------
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV--------------- 159 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~--------------- 159 (215)
|.|.+++.+|+|.|+|.+.+ +.......+.+.
T Consensus 63 --------------------------------L~I~~v~~~D~G~Y~C~a~N-g~a~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
T 3rbs_A 63 --------------------------------MFMEKLQDEDEGTYTFQLQD-GKATNHSTVVLVGDVFKKLQKEAEFQR 109 (207)
T ss_dssp --------------------------------EEESCCCGGGCEEEEEEEEE-TTEEEEEEEEECTHHHHHHHHHHHHHH
T ss_pred --------------------------------EEECCCChhhCEEEEEEEEC-CCeEEEEEEEEEccchhhhcccccccc
Confidence 44555555566666665554 222222222110
Q ss_pred ------cCCeEEecCCCcceeeecCCcEEEEEEeccc-CCCeEEEEeCCCcccccc
Q psy5838 160 ------VPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYVMWRREDGANLSYN 208 (215)
Q Consensus 160 ------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~~~ 208 (215)
.+|.+... ....+.+|+.+.|.|.+.|. |.|.+.|++ ||..+..+
T Consensus 110 ~~~~~~~~P~~~~~---~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~~ 161 (207)
T 3rbs_A 110 QEWIRKQGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVD 161 (207)
T ss_dssp HHHHHHTSSEEEEE---EEEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCC
T ss_pred cccccCCCCceEec---CCcEEcCCCcEEEEEEEeCCCCCCEEEEEE-CCEECCCC
Confidence 14554432 13567899999999999998 999999999 88877544
No 76
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.67 E-value=6.7e-16 Score=110.70 Aligned_cols=129 Identities=19% Similarity=0.336 Sum_probs=90.8
Q ss_pred CCcccCCCCceEEEe-CCcEEEEEEeeccCC--ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 17 MPHFAEPIPNVTVTV-GRDALLACVVDNLKG--FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~-G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
+|.+..++ ...+.+ |++++|.|.+.+.+. +. +.|+++ +..+. ..+...
T Consensus 3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~-------v~W~~~-~~~~~---------~~~~~~----------- 53 (190)
T 2wv3_A 3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMY-------SYWTKN-GVELT---------ATRKNA----------- 53 (190)
T ss_dssp CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEE-------EEEEET-TEECT---------TCCBCC-----------
T ss_pred CCcccccc-eEEEccCCceEEEEEEeccCCCCceE-------EEEEEC-CEECc---------ccceEe-----------
Confidence 46666544 455556 999999999998765 44 899994 33221 110000
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcce
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
.+..|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.+... +...
T Consensus 54 -----------------------------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~--~~~~ 102 (190)
T 2wv3_A 54 -----------------------------SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGH--KRSE 102 (190)
T ss_dssp -----------------------------SEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEE--CSEE
T ss_pred -----------------------------ccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCccccc--CCcc
Confidence 112466777888888888888865544556677888888887754 3355
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeC-CCccc
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRRE-DGANL 205 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~ 205 (215)
.+.+|+.+.|.|.+.|.|.|.+.|+++ +|..+
T Consensus 103 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~ 135 (190)
T 2wv3_A 103 NKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFE 135 (190)
T ss_dssp EEETTSCEEEEEEEECSSCCEEEEEEEETTEEE
T ss_pred eeeCCCcEEEEEEeCccCCCceEEEEcCCCcee
Confidence 688999999999999999999999995 34444
No 77
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.67 E-value=2.3e-15 Score=121.69 Aligned_cols=174 Identities=15% Similarity=0.261 Sum_probs=109.8
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeeec------eeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHHN------VITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~~------~~~~~~~~~~~~~-~~~~~ 90 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +..+ +..... ......|+.+..+ ....+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (444)
T 1igt_B 7 SGGGLVQPGGSLKLSCATSGFTFSDYY-------MYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTL 79 (444)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEE
T ss_pred CCCeEEcCCCCEEEEEEcCCCccCCce-------EEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeE
Confidence 4567899999999999998653 334 9999864 3322 111100 0112467777654 23578
Q ss_pred EEEEccceecCCEEEEEEccCC--------------------------------------------------Cce-EEEE
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTN--------------------------------------------------PRI-SLTY 119 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~--------------------------------------------------~~~-~~~~ 119 (215)
.|.|.+++.+|+|.|.|.+.+. |.+ .+.|
T Consensus 80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 159 (444)
T 1igt_B 80 YLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 159 (444)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEE
T ss_pred EEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEE
Confidence 9999999999999999987531 222 5666
Q ss_pred ccCC-------------------eEEEEEcccCCCCCeEEEEEeecCCCc-ceeeEEEE------------------EcC
Q psy5838 120 NDHR-------------------SWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQV------------------VVP 161 (215)
Q Consensus 120 ~~~~-------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v------------------~~~ 161 (215)
.... ...|.|..+..+| |.|+|.+.+.... .....+.+ ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (444)
T 1igt_B 160 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGG 238 (444)
T ss_dssp GGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCC
T ss_pred ecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCC
Confidence 3211 1247788888888 9999999764322 12222211 124
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecccC---C-CeEEEEeCCCcccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYP---E-PYVMWRREDGANLS 206 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~-~~i~W~~~~~~~~~ 206 (215)
|.+..........+.+|+.+.|.|.+.|.| + +.+.|++ +|..+.
T Consensus 239 p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k-~~~~~~ 286 (444)
T 1igt_B 239 PSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVH 286 (444)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECS
T ss_pred ceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE-CCcccc
Confidence 444222111111147899999999999874 3 5899999 666554
No 78
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.2e-15 Score=110.49 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=88.1
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...++|...+..+.+.+|+++.|.|.+.+.+.+. +.|++++ ..+. . .....
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~~-~~~~---------~---------~~~~~--- 66 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQ-------YQWFKMN-KEIP---------N---------GNTSE--- 66 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEETTTTSSE-------EEEEETT-EECT---------T---------CCSSE---
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCE-------EEEEECC-EECC---------C---------CCCCE---
Confidence 3467888889999999999999999998877776 9999943 3210 0 01223
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEcC-----------
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVVP----------- 161 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~----------- 161 (215)
|.|.+++..|+|.|+|.+.+... .+..+.+.|...
T Consensus 67 --------------------------------L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~ 114 (218)
T 3k0w_A 67 --------------------------------LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114 (218)
T ss_dssp --------------------------------EEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSB
T ss_pred --------------------------------EEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccc
Confidence 44555555666666666654211 133345555543
Q ss_pred ----CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccC
Q psy5838 162 ----PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 162 ----p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++ ++..+....
T Consensus 115 ~~~~p~~~~--~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~~~~~~~~~ 163 (218)
T 3k0w_A 115 SESKLQICV--EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHET 163 (218)
T ss_dssp CCSSCEEEE--CCCCEEECTTCCEEEECEEEBSSCCEEEEEE-TTEECTTCC
T ss_pred cCCCceEEE--CCCceeecCCCcEEEEEEecccCCCeEEEEE-CCEECCCCC
Confidence 33333 3345568899999999999999999999999 777765443
No 79
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.67 E-value=8.1e-16 Score=111.31 Aligned_cols=136 Identities=27% Similarity=0.377 Sum_probs=83.4
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCC--ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
+..++..+.+.+|+++.|.|.+.+.+. ...+. +.|+|.++... ...+|+.+..+...
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~----v~W~k~~~~~~--------~~~~r~~~~~~~~~--------- 63 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIR----ASLQKVENDTS--------LQSERATLLEEQLP--------- 63 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEE----EEEEECC--CC--------CBCSSCEECGGGGG---------
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceE----EEEEcCCCccc--------ccCCceEEeecccc---------
Confidence 445666899999999999999988764 11121 99999433321 12233333221100
Q ss_pred eecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEcCCeEEecCCCcceeee
Q psy5838 98 QESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPSIIDKDTSTDLVVR 176 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 176 (215)
.....|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++..... ....+.
T Consensus 64 ------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~---~~~~~~ 116 (202)
T 3bp6_B 64 ------------------------LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT---RILEVP 116 (202)
T ss_dssp ------------------------GTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEE---EEEECT
T ss_pred ------------------------CCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccE---EEEecC
Confidence 011346677777777777888775432 2344556777665432211 011346
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCcc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGAN 204 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~ 204 (215)
+|+.+.|.|.+.|+|.|.+.|++ ++..
T Consensus 117 ~g~~v~l~C~~~g~P~p~v~W~~-~~~~ 143 (202)
T 3bp6_B 117 GTGEVQLTCQARGYPLAEVSWQN-VSVP 143 (202)
T ss_dssp TTCCEEEEEEEEEBSCCEEEETT-CCSC
T ss_pred CCCeEEEEEEccccCCceEEEEe-CCCC
Confidence 79999999999999999999999 5543
No 80
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.66 E-value=3.4e-15 Score=109.17 Aligned_cols=143 Identities=17% Similarity=0.323 Sum_probs=87.0
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC---CccEEEeeec----ee--eeCCceEEEEcCC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD---TQTILSIHHN----VI--TQNPRISLTYNDH 87 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~---~~~~~~~~~~----~~--~~~~~~~~~~~~~ 87 (215)
|.+..++ .+.+.+|++|+|.|.+.+. +.+. +.|+|.. ...++..... .. ....|+.+..
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--- 70 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYT-------IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--- 70 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCC-------EEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE---
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcE-------EEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec---
Confidence 4566667 8899999999999999988 6666 9999943 1111111000 00 0012332222
Q ss_pred ceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC------CcceeeEEEEE--
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP------MRSRQGYLQVV-- 159 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~-- 159 (215)
......|.|.+++.+|+|.|.|.+.+.. .......+.|.
T Consensus 71 ---------------------------------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~ 117 (218)
T 3s96_B 71 ---------------------------------SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ 117 (218)
T ss_dssp ---------------------------------ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC
T ss_pred ---------------------------------CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecC
Confidence 1233456777777777777777775422 22334567776
Q ss_pred --cCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 160 --VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 160 --~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.+|.+..... ...+..|+.+.|.|.+.+ .|.+ .+.|++ +|..+..
T Consensus 118 ~~~~P~~~~~~~--~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~ 166 (218)
T 3s96_B 118 PKSTPTLTVFPP--SSEELKENKATLVCLISNFSPSGVTVAWKA-NGTPITQ 166 (218)
T ss_dssp CCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEC--
T ss_pred CCCCceEEeeCC--CcccccCCcEEEEEEECcccCCCeEEEEEE-CCEECcC
Confidence 4555554322 222446789999999988 5767 899999 7877654
No 81
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.66 E-value=1.1e-15 Score=110.86 Aligned_cols=141 Identities=21% Similarity=0.333 Sum_probs=96.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeec-ee--eeCCceEEEEcCCceEEEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN-VI--TQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~ 93 (215)
.+.|...+..+.+.+|+++.|.|.+.+.+.+. +.|++++.......... .. ....|+...
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------- 66 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPR-------VEWKFDQGDTTRLVCYNNKITASYEDRVTFL---------- 66 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEE-------EEEEEEETTEEEESEETTEECTTTTTTCEEE----------
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcE-------EEEEEcCCceeEEEEecCccCccccCceEee----------
Confidence 35667778889999999999999999876666 99999644321111000 00 001111111
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC---CCcceeeEEEEEcCCeEEecCCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD---PMRSRQGYLQVVVPPSIIDKDTS 170 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~~p~~~~~~~~ 170 (215)
...|.|.+++.+|+|.|+|.+.+. ......+.+.|..+|.+....
T Consensus 67 ------------------------------~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~-- 114 (209)
T 1nbq_A 67 ------------------------------PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN-- 114 (209)
T ss_dssp ------------------------------TTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCC--
T ss_pred ------------------------------ccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcc--
Confidence 024778888899999999998653 233455677788888765432
Q ss_pred cceeeecCCcEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy5838 171 TDLVVREQANVTLNCKA-QGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~ 207 (215)
....+..|+.+.|.|.+ .+.|.+.+.|++ ++..+..
T Consensus 115 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~~~~ 151 (209)
T 1nbq_A 115 IPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPT 151 (209)
T ss_dssp CBSEEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCS
T ss_pred cccceecCCEEEEEEeCCCCCCCceeEEEE-CCeeCCC
Confidence 23457899999999997 889999999999 7776654
No 82
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.66 E-value=1.3e-15 Score=123.64 Aligned_cols=174 Identities=16% Similarity=0.296 Sum_probs=109.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeec------eeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHN------VITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~ 90 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +.. +...... ......|+.+..+ ....+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFV-------IHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 79 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSC-------EEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred CCceEEcCCCCEEEEEEecCccccCcE-------EEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEE
Confidence 4568899999999999998764 344 9999853 221 2111100 0012467777654 23567
Q ss_pred EEEEccceecCCEEEEEEccCC----------------------------------------------------------
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTN---------------------------------------------------------- 112 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~---------------------------------------------------------- 112 (215)
.|.|.+++.+|+|.|+|.+.+.
T Consensus 80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~ 159 (457)
T 1hzh_H 80 YMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY 159 (457)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESB
T ss_pred EEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEE
Confidence 9999999999999999987321
Q ss_pred -Cc-eEEEEccCC--------------------eEEEEEcccCCCCCeEEEEEeecCCCc-ceeeEEEEE----------
Q psy5838 113 -PR-ISLTYNDHR--------------------SWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVV---------- 159 (215)
Q Consensus 113 -~~-~~~~~~~~~--------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~---------- 159 (215)
|. +.+.|.... ...|.|.++..+| |.|+|.+.+.... .....+.+.
T Consensus 160 ~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~ 238 (457)
T 1hzh_H 160 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP 238 (457)
T ss_dssp BSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCS
T ss_pred eCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCC
Confidence 21 445553211 1247888888888 9999999763322 112222211
Q ss_pred -------cCCeEEecCCCcceeeecCCcEEEEEEecccCCC----eEEEEeCCCcccc
Q psy5838 160 -------VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP----YVMWRREDGANLS 206 (215)
Q Consensus 160 -------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~i~W~~~~~~~~~ 206 (215)
.+|.+..........+.+|+.+.|.|.+.|.|++ .+.|++ ++..+.
T Consensus 239 ~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k-~~~~~~ 295 (457)
T 1hzh_H 239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVH 295 (457)
T ss_dssp CCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE-TTEEEC
T ss_pred CCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe-CCcccc
Confidence 1344422211111125679999999999997543 899999 776553
No 83
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.65 E-value=1.3e-15 Score=108.95 Aligned_cols=127 Identities=30% Similarity=0.540 Sum_probs=86.1
Q ss_pred CCcccCCCC--ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 17 MPHFAEPIP--NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 17 ~p~~~~~~~--~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
+|.|...+. .+.+.+|++++|.|.+.+.+.+. +.|+++ +..+ ....++.+... ..
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~-~~~~--------~~~~~~~~~~~---~~---- 58 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-------ISWFRN-GKLI--------EENEKYILKGS---NT---- 58 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCE-------EEEEET-TEEC--------CCSSSEEEETT---TT----
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCe-------EEEEEC-CeEc--------CCCccEEEeCC---ee----
Confidence 466665544 56778999999999999877776 999994 4332 11223322211 11
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcce
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
.|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+... ...
T Consensus 59 -------------------------------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~---~~~ 104 (192)
T 2va4_A 59 -------------------------------ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQL---KNE 104 (192)
T ss_dssp -------------------------------EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE---CCE
T ss_pred -------------------------------EEEEecCChhcCcEEEEEEEccccccceEEEEEEEccCccccc---Ccc
Confidence 3556667777777777777543 23345556777777776643 234
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
.+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus 105 ~~~~g~~v~l~C~~~~~p~~~v~W~~~ 131 (192)
T 2va4_A 105 TTYENGQVTLVCDAEGEPIPEITWKRA 131 (192)
T ss_dssp EECTTSEEEEEEEEEEESCCEEEEEET
T ss_pred eEEeCCeEEEEEEecCCCCCcEEEEeC
Confidence 567899999999999999999999993
No 84
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.65 E-value=3.6e-15 Score=105.64 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=87.1
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.+...+....+.+|++++|.|.+.+.+.+. .+.|++ ++..+. . ....
T Consensus 4 ~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~------~~~W~~-~~~~~~---------~----------~~~~-- 55 (175)
T 1fnl_A 4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN------STQWFH-NESLIS---------S----------QASS-- 55 (175)
T ss_dssp CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBC------CCEEEE-TTEEEE---------S----------SCSE--
T ss_pred CCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCc------ceEEEE-CCEEcc---------C----------CceE--
Confidence 34567788788888999999999999998876553 167999 443321 0 1123
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcce
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
|.|.+++.+|+|.|+|.+.+ ...+..+.+.|..++..... ...
T Consensus 56 ---------------------------------L~i~~~~~~d~G~Y~C~~~n-~~~s~~~~l~V~~~~~~~~~---~~~ 98 (175)
T 1fnl_A 56 ---------------------------------YFIDAATVNDSGEYRCQTNL-STLSDPVQLEVHIGWLLLQA---PRW 98 (175)
T ss_dssp ---------------------------------EEESSCCGGGCEEEEEECSS-SCCCCCEEEEEECSSEEEEC---SCS
T ss_pred ---------------------------------EEEeCCCcccCEEEEEEeeC-CcccccEEEEEeCCCceeeC---CCc
Confidence 55666666677777777654 23345566777755554432 234
Q ss_pred eeecCCcEEEEEEecccCCC-eEEEEeCCCcccc
Q psy5838 174 VVREQANVTLNCKAQGYPEP-YVMWRREDGANLS 206 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~ 206 (215)
.+.+|+.+.|.|.+.+.|++ .+.|++ +|..+.
T Consensus 99 ~~~~g~~~~l~C~~~~~~~~~~~~W~k-~g~~~~ 131 (175)
T 1fnl_A 99 VFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRK 131 (175)
T ss_dssp EEETTCCEEEEEEECTTCCCEEEEEEE-TTEEEE
T ss_pred eecCCCCEEEEEEcCCCCCceEEEEEE-CCeEcc
Confidence 57899999999999887654 999999 777654
No 85
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.64 E-value=3.3e-15 Score=108.86 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=88.0
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeece--eeeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHNV--ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~l 92 (215)
|.+...+..+.+.+|++++|.|.+.+.+.+. +.|+|... .. .+...... .....|+....
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------- 66 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNY-------LNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-------- 66 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--------
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCce-------EEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--------
Confidence 4556667789999999999999999887666 99998431 11 11110000 00122333221
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEE---EcCCeEEec
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQV---VVPPSIIDK 167 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v---~~~p~~~~~ 167 (215)
......|.|.+++.+|+|.|+|.+.+.. .......+.| ..+|.+...
T Consensus 67 ----------------------------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~ 118 (213)
T 3r06_A 67 ----------------------------SGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF 118 (213)
T ss_dssp ----------------------------ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE
T ss_pred ----------------------------cCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeee
Confidence 1123457777777778888888875432 2233345666 445655543
Q ss_pred CCCcceeeecCCcEEEEEEecccCC--CeEEEEeCCCccccc
Q psy5838 168 DTSTDLVVREQANVTLNCKAQGYPE--PYVMWRREDGANLSY 207 (215)
Q Consensus 168 ~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~ 207 (215)
. ....+..|+.+.|.|.+.+.|+ +.+.|++ +|..+..
T Consensus 119 ~--~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~ 157 (213)
T 3r06_A 119 P--PSSEQLGTGSATLVCFVNNFYPKDINVKWKV-DGSEKRD 157 (213)
T ss_dssp C--CCHHHHTTTEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred C--CCceecCCCCcEEEEEEeeecCCceEEEEEE-CCcccCC
Confidence 2 2223446888999999988654 3899999 7776653
No 86
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.64 E-value=9.7e-15 Score=110.30 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE--E-Eeeeceeee-----CCceEEEEcC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI--L-SIHHNVITQ-----NPRISLTYND 86 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~--~-~~~~~~~~~-----~~~~~~~~~~ 86 (215)
..+.+...+..+.+.+|++|+|.|.+.. +.+. +.|+|.. +... + ......... ++|+.+....
T Consensus 25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 96 (268)
T 3pl6_D 25 GGAGVSQTPSNKVTEKGKYVELRCDPIS-GHTA-------LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPE 96 (268)
T ss_dssp --SSCBCCCSEEEEETTCCEEEEEBCBT-TCCE-------EEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT
T ss_pred cCceeEeCCCEEEecCCCCEEEEEEeCC-CCce-------EEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecC
Confidence 3566777888899999999999999873 3344 9999942 2211 1 110000000 0333333221
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC---CCcceeeEEEEEc---
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD---PMRSRQGYLQVVV--- 160 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~--- 160 (215)
..+..|.|.+++.+|+|.|.|.+.+. ........+.|..
T Consensus 97 -----------------------------------~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~ 141 (268)
T 3pl6_D 97 -----------------------------------GSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLK 141 (268)
T ss_dssp -----------------------------------SSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGG
T ss_pred -----------------------------------CCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcc
Confidence 22345667777777777777777532 1222334566654
Q ss_pred ---CCeEEecCCCcceeeecCCcEEEEEEecccCC-C-eEEEEeCCCcccc
Q psy5838 161 ---PPSIIDKDTSTDLVVREQANVTLNCKAQGYPE-P-YVMWRREDGANLS 206 (215)
Q Consensus 161 ---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~-~i~W~~~~~~~~~ 206 (215)
+|.+... .+....+.+|+.+.|.|.+.+.|+ + .+.|++ ||..+.
T Consensus 142 ~~~~P~v~~~-~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~-~g~~l~ 190 (268)
T 3pl6_D 142 NVFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH 190 (268)
T ss_dssp GCBCCEEEEE-CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-SSSEEC
T ss_pred cccCCceEEe-CCCcccccCCCceEEEEEECcccCCCeEEEEEE-CCEECC
Confidence 4554433 223334567999999999998544 4 899999 787764
No 87
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.64 E-value=2.7e-15 Score=108.19 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=74.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+.. .+.+|++|+|.|.+.+.+. . +.|+|++.. +.... .. .......
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~-------~~W~k~g~~-~~~~~-----~~-----~~~~~~~------ 57 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-E-------YRLVKEGSP-EPWDT-----QN-----PLEPKNK------ 57 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-E-------EEEEETTCS-SCSEE-----EC-----CCSSTTE------
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-E-------EEEEECCCC-CCccc-----cc-----ccCCccc------
Confidence 35677666654 7889999999999987654 4 999995432 21000 00 0001112
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEc---CCeEEecCC
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVV---PPSIIDKDT 169 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~ 169 (215)
..|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...
T Consensus 58 -----------------------------~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~-- 106 (196)
T 2d3v_A 58 -----------------------------ARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL-- 106 (196)
T ss_dssp -----------------------------EEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC---
T ss_pred -----------------------------cEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc--
Confidence 235566777777777777775432 224456677765 3444322
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
....+.+|+++.|.|.+.+.| +.+.|++ +|..+
T Consensus 107 -~~~~v~~G~~v~L~C~~~~~p-~~~~W~k-~g~~~ 139 (196)
T 2d3v_A 107 -PSPVVTSGENVTLQCGSRLRF-DRFILTE-EGDHK 139 (196)
T ss_dssp -----------CEEEEEESSCC-SEEEEEE-C---C
T ss_pred -CCccccCCCcEEEEEEcCCCC-CEEEEEc-cCCcc
Confidence 224578999999999999988 8999999 66655
No 88
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.64 E-value=2.5e-15 Score=109.28 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.+...+....+.+|++++|.|.+.+.+.+. .+.|++ ++..+. . ..+.
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~------~v~W~k-~g~~l~---------~----------~~~~---- 55 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ------STQWFH-NESLIS---------S----------QASS---- 55 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCC------CEEEEE-TTEEES---------C----------CSSE----
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCc------EEEEEE-CCEEcc---------c----------CccE----
Confidence 456777777778999999999999999865442 189999 444221 0 0113
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceee
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVV 175 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~ 175 (215)
|.|.+++.+|+|.|+|.+.+ ...+..+.+.|..+|.+... ....+
T Consensus 56 -------------------------------L~i~~v~~~D~G~Y~C~a~n-~~~s~~~~l~V~~~p~~~~~---~~~~v 100 (204)
T 3sgj_C 56 -------------------------------YFIDAATVDDSGEYRCQTQL-STLSDPVQLEVHIGWLLLQA---PRWVF 100 (204)
T ss_dssp -------------------------------EEESSCCGGGCEEEEEEETT-SBCCCCEEEEEECSSEEEEC---SCSEE
T ss_pred -------------------------------EEEecccccCCEEEEEEeCC-CcccccEEEEEecCceEecC---CceeE
Confidence 55666666777777777754 34455677888877766543 22457
Q ss_pred ecCCcEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy5838 176 REQANVTLNCKAQGY-PEPYVMWRREDGANLS 206 (215)
Q Consensus 176 ~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~~~ 206 (215)
.+|+++.|.|.+.+. |.+.+.|++ +|..+.
T Consensus 101 ~~G~~v~L~C~~~~~~p~~~v~W~k-~g~~~~ 131 (204)
T 3sgj_C 101 KEEDPIHLRCHSWKNTALHKVTYLQ-NGKGRK 131 (204)
T ss_dssp ETTCCEEEEEEEGGGCCCEEEEEEE-TTEEEE
T ss_pred eCCCcEEEEEEecCCCCCceEEEEE-CCcEee
Confidence 899999999999765 567899999 777654
No 89
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.64 E-value=5.8e-15 Score=110.05 Aligned_cols=145 Identities=15% Similarity=0.284 Sum_probs=86.4
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEee--eceee----eCCceEEEEcCCc
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIH--HNVIT----QNPRISLTYNDHR 88 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~--~~~~~----~~~~~~~~~~~~~ 88 (215)
.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|... .. +.... ..... ..+|+.+....
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-- 73 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATT-------MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-- 73 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCS-------EEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE--
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceE-------EEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC--
Confidence 455667789999999999999999887776 99998421 11 11111 00000 01333333221
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEEc---
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVVV--- 160 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~--- 160 (215)
.....|.|.+++.+|+|.|.|.+.+.. .......+.|..
T Consensus 74 ---------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~ 120 (246)
T 4dzb_B 74 ---------------------------------LTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK 120 (246)
T ss_dssp ---------------------------------TTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG
T ss_pred ---------------------------------CCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC
Confidence 123346666677777777777765321 112334566653
Q ss_pred ---CCeEEecCCCcceeeecCCcEEEEEEecccCCC--eEEEEeCCCccccc
Q psy5838 161 ---PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP--YVMWRREDGANLSY 207 (215)
Q Consensus 161 ---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~ 207 (215)
+|.+... .+....+.+|+.+.|.|.+.+.|++ .+.|++ +|..+..
T Consensus 121 ~~~~P~i~~~-~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~ 170 (246)
T 4dzb_B 121 NVFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS 170 (246)
T ss_dssp GCBCCEEEEE-CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred cccCCceEee-cCCchhccCCCcEEEEEEEccCcCCceEEEEEE-CCEECCC
Confidence 4544432 2233335679999999999986554 899999 7877653
No 90
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.63 E-value=4.6e-15 Score=105.80 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=89.6
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceee-----eCCceEEEEc--CCceEEEEEccc
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT-----QNPRISLTYN--DHRSWFLNIKNV 97 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~l~i~~~ 97 (215)
..+.+.+|++++|.|.+.+.+.+. +.|++++...++........ ...|+..... ......|.|.++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~-------i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v 75 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQ-------FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL 75 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCC-------EEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSC
T ss_pred CcEEEeCCCCEEEEEEEcCCCceE-------EEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecC
Confidence 357789999999999998777776 99999654433322111111 1233433322 223556999999
Q ss_pred eecCCEEEEEEccC----------------------------------CCceEEEEccCC------eEEEEEcccCCCCC
Q psy5838 98 QESDRGWYMCQVNT----------------------------------NPRISLTYNDHR------SWFLNIKNVQESDR 137 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~----------------------------------~~~~~~~~~~~~------~~~l~i~~~~~~d~ 137 (215)
+.+|+|.|+|.+.+ .|.+.+.|.... ...|.|.+++.+|+
T Consensus 76 ~~~D~G~Y~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~ 155 (184)
T 2ny1_B 76 KIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS 155 (184)
T ss_dssp CGGGCEEEEEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEESSEEEESSCCGGGC
T ss_pred CHHHCEEEEEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCceEEEEecCCcCCC
Confidence 99999999998763 466777775432 34699999999999
Q ss_pred eEEEEEeecC-CCcceeeEEEEEcCC
Q psy5838 138 GWYMCQVNTD-PMRSRQGYLQVVVPP 162 (215)
Q Consensus 138 G~Y~C~~~~~-~~~~~~~~l~v~~~p 162 (215)
|.|+|.+.+. +.....+.|.|...|
T Consensus 156 G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 156 GTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred eEEEEEEEECCceEEEEEEEEEEecC
Confidence 9999999753 334455566666554
No 91
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.62 E-value=1.3e-14 Score=105.69 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=85.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l 92 (215)
+.+..++ .+.+.+|++|+|.|.+. +.+. +.|+|+. +.. .+....... ....|+.....
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------- 64 (211)
T 3tv3_L 2 SALTQPP-SASGSPGQSITISCTGT--SNNF-------VSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKS------- 64 (211)
T ss_dssp -CCBCCS-EEEECTTCEEEEEEECC--CSSC-------EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-------
T ss_pred ceEEeCc-eEEEcCCCCEEEEEEEC--CCCe-------EEEEEECCCCCCEEEEEEecccCCCCcCcEEEEcc-------
Confidence 3455666 88999999999999998 4555 9999952 211 111100000 01123332221
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC---cceeeEEEEE----cCCeEE
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM---RSRQGYLQVV----VPPSII 165 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~----~~p~~~ 165 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|. .+|.+.
T Consensus 65 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~ 115 (211)
T 3tv3_L 65 -----------------------------GNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVT 115 (211)
T ss_dssp -----------------------------TTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEE
T ss_pred -----------------------------CCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeE
Confidence 1234466777777778888887755322 3344566776 466665
Q ss_pred ecCCCcceeeecCCcEEEEEEecccC--CCeEEEEeCCCcccc
Q psy5838 166 DKDTSTDLVVREQANVTLNCKAQGYP--EPYVMWRREDGANLS 206 (215)
Q Consensus 166 ~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~ 206 (215)
..... ..+..|+.+.|.|.+.+.+ .+.+.|++ +|..+.
T Consensus 116 ~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~ 155 (211)
T 3tv3_L 116 LFPPS--SEELQANKATLVCLISDFYPGAVTVAWKA-DSSPVK 155 (211)
T ss_dssp EECCC--HHHHHTTCEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred ecCCc--hhhhcCCCeEEEEEeeeecCCCeEEEEEE-CCeecC
Confidence 43222 2233799999999998853 46899999 777664
No 92
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.62 E-value=1.9e-15 Score=121.91 Aligned_cols=173 Identities=12% Similarity=0.182 Sum_probs=107.7
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeeec------eeeeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHHN------VITQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~~------~~~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +..+ ...... ......|+.+..+. ...+
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 78 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYT-------IHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTA 78 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCC-------CEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCce-------EEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEE
Confidence 4567899999999999998753 344 8999964 3322 111100 00123566655431 2456
Q ss_pred EEEEccceecCCEEEEEEccC-----------------------------------------------CCce-EEEEccC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT-----------------------------------------------NPRI-SLTYNDH 122 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~-----------------------------------------------~~~~-~~~~~~~ 122 (215)
.|.|.+++.+|+|.|+|.+.+ .|.+ .+.|...
T Consensus 79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~ 158 (434)
T 1igy_B 79 NIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 158 (434)
T ss_dssp CEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTT
T ss_pred EEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeC
Confidence 899999999999999998752 1332 6667322
Q ss_pred C-------------------eEEEEEcccCCCCCeEEEEEeecCCCc-ceeeEEEEEc---------C---CeEEecCCC
Q psy5838 123 R-------------------SWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVV---------P---PSIIDKDTS 170 (215)
Q Consensus 123 ~-------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~---------~---p~~~~~~~~ 170 (215)
. ...|.|..+..+| |.|+|.+.+.... .....+.+.. . |.+......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~ 237 (434)
T 1igy_B 159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK 237 (434)
T ss_dssp TBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCC
T ss_pred CcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCC
Confidence 1 1347888888888 9999999764322 2222222210 0 333322111
Q ss_pred cceeeecCCcEEEEEEecccC----CCeEEEEeCCCccc
Q psy5838 171 TDLVVREQANVTLNCKAQGYP----EPYVMWRREDGANL 205 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~~~ 205 (215)
....+.+|+.+.|.|.+.+.| .+.++|++ ++..+
T Consensus 238 ~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k-~~~~~ 275 (434)
T 1igy_B 238 PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFV-DNVEV 275 (434)
T ss_dssp HHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBS-SSCCB
T ss_pred hHHhcccCCCcEEEEEEeccccCCCCeEEEEEe-CCccc
Confidence 111177899999999999874 34799999 55554
No 93
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.62 E-value=1.3e-15 Score=130.61 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=81.3
Q ss_pred CCceEEEeC--CcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 24 IPNVTVTVG--RDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 24 ~~~~~~~~G--~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
+..+.+.+| ++++|.|.+.+ +... +.|+++. +..+. ......... ....|.|.+++.+
T Consensus 133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~-------v~w~~~~~~~~~~-------~~~~~~~~~----~~~~l~i~~~~~~ 193 (772)
T 3v2a_R 133 HGVVYITENKNKTVVIPCLGSI-SNLN-------VSLCARYPEKRFV-------PDGNRISWD----SKKGFTIPSYMIS 193 (772)
T ss_dssp EEEEEEESSCCCEEEECCCCSC-SSCC-------EEEEEETTTEEEC-------CCSSSCEEE----TTTEEEEEGGGTT
T ss_pred ceeEEEecCCCCeEEEEccCCC-CCcE-------EEEEecCCCcccc-------CCCceeecC----CCCCeEecCCChh
Confidence 346778889 88999999987 3445 9999941 22221 011111111 2236899999999
Q ss_pred CCEEEEEEccC------------------------------------------------CCceEEEEccC----------
Q psy5838 101 DRGWYMCQVNT------------------------------------------------NPRISLTYNDH---------- 122 (215)
Q Consensus 101 d~G~Y~C~~~~------------------------------------------------~~~~~~~~~~~---------- 122 (215)
|+|.|+|.+.+ .+.+.+.|...
T Consensus 194 d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~ 273 (772)
T 3v2a_R 194 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 273 (772)
T ss_dssp TCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CE
T ss_pred hCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceee
Confidence 99999998751 22344555221
Q ss_pred --------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecC-CCcceeeecCCcEEEEEE
Q psy5838 123 --------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKD-TSTDLVVREQANVTLNCK 186 (215)
Q Consensus 123 --------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~~l~C~ 186 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+.... ......+.+|+.+.|.|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~ 353 (772)
T 3v2a_R 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAK 353 (772)
T ss_dssp EEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC------------------------
T ss_pred eccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEE
Confidence 1235899999999999999999753 344556778888888765432 223456889999999999
Q ss_pred ecccCCCeEEEEeCCCccccc
Q psy5838 187 AQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 187 ~~~~p~~~i~W~~~~~~~~~~ 207 (215)
+.++|.+.+.|++ +|..+..
T Consensus 354 ~~~~p~~~v~W~~-~g~~l~~ 373 (772)
T 3v2a_R 354 YLGYPPPEIKWYK-NGIPLES 373 (772)
T ss_dssp ---------------------
T ss_pred EeeeCCCeEEEEE-CCEeCCC
Confidence 9999999999999 7776653
No 94
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.62 E-value=8.2e-15 Score=108.39 Aligned_cols=144 Identities=19% Similarity=0.291 Sum_probs=86.3
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEEEcCCceEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLTYNDHRSWF 91 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (215)
.+.+...+..+.+.+|++++|.|.+.+.+.+. +.|+|+. +.. .+....... ....|+.....
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------ 90 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTA-------VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS------ 90 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE------
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCce-------EEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC------
Confidence 45566667789999999999999999886666 9999953 111 111100000 11233333211
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEE---cCCeEEe
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVV---VPPSIID 166 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~---~~p~~~~ 166 (215)
.....|.|.+++.+|+|.|+|.+.+.. .......+.|. .+|.+..
T Consensus 91 ------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~ 140 (237)
T 3sob_L 91 ------------------------------GTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFI 140 (237)
T ss_dssp ------------------------------TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEE
T ss_pred ------------------------------CCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEE
Confidence 123446677777777777777774422 12233345553 3455543
Q ss_pred cCCCcceeeecCCcEEEEEEecc-cC-CCeEEEEeCCCcccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQG-YP-EPYVMWRREDGANLS 206 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~i~W~~~~~~~~~ 206 (215)
... ...+.+|+.+.|.|.+.+ .| .+.+.|++ +|..+.
T Consensus 141 ~~~--~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k-~g~~~~ 179 (237)
T 3sob_L 141 FPP--SDEQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQS 179 (237)
T ss_dssp ECC--CHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred eCC--ChhhccCCceEEEEEEcccCCCceEEEEEE-CCCCCC
Confidence 222 222346889999999988 45 57999999 777665
No 95
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.62 E-value=6e-15 Score=107.13 Aligned_cols=123 Identities=11% Similarity=0.184 Sum_probs=81.1
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEE
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWY 105 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 105 (215)
.+.+.+|++++|.|.+.+.+.+. +.|++.....+ ..+.. ...
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~p~-------i~W~~~~~~~~----------~~~~~--~~~------------------- 51 (202)
T 1vca_A 10 RYLAQIGDSVSLTCSTTGCESPF-------FSWRTQIDSPL----------NGKVT--NEG------------------- 51 (202)
T ss_dssp EEEEETTSCEEEEEEEESCSSCE-------EEEEETTCCCC----------SSEEE--EET-------------------
T ss_pred cEEEcCCCcEEEEEeecCCCCCe-------EEEECCCCCCc----------cceEE--EcC-------------------
Confidence 34455999999999999887776 99988432211 01100 000
Q ss_pred EEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEE
Q psy5838 106 MCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLN 184 (215)
Q Consensus 106 ~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~ 184 (215)
....|.|.+++.+|+|.|.|.+.+. +.....+.|.|..+|........ ..+.+|+.+.|.
T Consensus 52 -----------------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~ 112 (202)
T 1vca_A 52 -----------------TTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVK 112 (202)
T ss_dssp -----------------TEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEE
T ss_pred -----------------CccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEE
Confidence 1123667777888888888888654 33445667888877654332122 457899999999
Q ss_pred EEeccc-CCC--eEEEEeCCCcccc
Q psy5838 185 CKAQGY-PEP--YVMWRREDGANLS 206 (215)
Q Consensus 185 C~~~~~-p~~--~i~W~~~~~~~~~ 206 (215)
|.+.+. |.+ .+.|++ ++..+.
T Consensus 113 C~~~~~~p~~~~~i~W~k-~~~~l~ 136 (202)
T 1vca_A 113 CSVADVYPFDRLEIDLLK-GDHLMK 136 (202)
T ss_dssp EEEEEEBSGGGEEEEEEE-TTEEEE
T ss_pred EEECCcCCCCCeEEEEEe-CCeECc
Confidence 999885 433 689999 776653
No 96
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.62 E-value=2.8e-15 Score=110.23 Aligned_cols=133 Identities=19% Similarity=0.304 Sum_probs=86.1
Q ss_pred CCCcccCCC----CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 16 LMPHFAEPI----PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 16 ~~p~~~~~~----~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
.+|.|...+ ....+.+|+++.|.|.+.+.+.+. +.|+++ +..+. ...++.........
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~-~~~~~--------~~~~~~~~~~~~~~-- 75 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKN-GKEFK--------QEHRIGGYKVRNQH-- 75 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCE-------EEEEET-TEECC--------GGGSTTCCEEEGGG--
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecccCCCCe-------EEEEEC-Ccccc--------ccccccceeeecCc--
Confidence 356676554 788899999999999999887776 999994 44321 11111000000011
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCe---EEec
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPS---IIDK 167 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~---~~~~ 167 (215)
..|.|.+++.+|+|.|+|.+.+. +.......+.|..++. ....
T Consensus 76 ---------------------------------~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~ 122 (231)
T 3ojm_B 76 ---------------------------------WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 122 (231)
T ss_dssp ---------------------------------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECT
T ss_pred ---------------------------------ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceee
Confidence 13566677777777777777543 3334445566665322 2222
Q ss_pred CCCcceeeecCCcEEEEEEecccCCCeEEEEe
Q psy5838 168 DTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199 (215)
Q Consensus 168 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~ 199 (215)
..+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~ 154 (231)
T 3ojm_B 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154 (231)
T ss_dssp TCSCCEEEETTCCEEEECCEECSSCCEEEEEE
T ss_pred ccCCceEEEeCCcEEEEEEEecCCCCEEEEEE
Confidence 23445678899999999999999999999998
No 97
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.62 E-value=2.6e-15 Score=106.44 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=83.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..|.+...+..+.+.+|++++|.|.+.+.+.+ . +.|+++ +..+. . ....
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~-------i~W~~~-~~~~~---------~----------~~~~--- 52 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSS-------TKWFHN-GSLSE---------E----------TNSS--- 52 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----C-------CEEEET-TEECS---------C----------CSSE---
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcce-------EEEEEC-CeECC---------C----------CceE---
Confidence 36777777888899999999999999877654 4 889994 33210 0 1123
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCccee
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLV 174 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~ 174 (215)
|.|.+++.+|+|.|+|.+.+ ...+..+.+.|..++..... ....
T Consensus 53 --------------------------------L~i~~v~~~d~G~Y~C~~~~-~~~s~~~~l~V~~~~~~~~~---~~~~ 96 (176)
T 1f2q_A 53 --------------------------------LNIVNAKFEDSGEYKCQHQQ-VNESEPVYLEVFSDWLLLQA---SAEV 96 (176)
T ss_dssp --------------------------------EEECSCCGGGCEEEEEECTT-SSCCCCEEEEEECSSEEEEE---SCSE
T ss_pred --------------------------------EEEeccceecCEEEEEEcCC-ccccccEEEEEeCcceeecC---Ccce
Confidence 45666666667777777653 22345566777755554432 2345
Q ss_pred eecCCcEEEEEEec-ccCCCeEEEEeCCCccccc
Q psy5838 175 VREQANVTLNCKAQ-GYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 175 ~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~ 207 (215)
+.+|+.+.|.|.+. +.|.+.+.|++ +|..+..
T Consensus 97 ~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~ 129 (176)
T 1f2q_A 97 VMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKY 129 (176)
T ss_dssp EETTSCEEEEEEEGGGCCEEEEEEEE-TTEECCS
T ss_pred eeCCCCEEEEEEecCCCCceEEEEEE-CCEEEee
Confidence 78999999999995 56667999999 7877653
No 98
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.62 E-value=2.5e-15 Score=109.14 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=55.1
Q ss_pred EEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEe-cccCCCeEEEEeC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMWRRE 200 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~ 200 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+... .....+..|+.+.|.|.+ .+.|.+.+.|+++
T Consensus 84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~ 159 (214)
T 3jz7_A 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC--FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL 159 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE--EEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee--eeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence 34778888888888888888653 33455667888887765432 122337789999999999 8899999999994
No 99
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.62 E-value=5e-15 Score=119.71 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=100.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
+...|....+.+|++++|.|.+.+ +.+. .+.|.+.|+|++.. + .+. ....|.|.+++.
T Consensus 2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~--~~~~~~~w~k~~~~-~---------~~~---------~~~~l~i~~v~~ 59 (450)
T 1z7z_I 2 TSVSPSKVILPRGGSVLVTCSTSC-DQPM--LLGIETPLPKKELL-L---------PGN---------NRKVYELSNVQE 59 (450)
T ss_dssp CEEESSEEEEETTEEEEEEEECCS-SCCC--EEEECSSSCEEECC-S---------STT---------TEEEEEEEEECS
T ss_pred cccCCCceEEecCCcEEEEEEccC-CCcc--cccccceeeecceE-e---------cCC---------CceEEEEEeccc
Confidence 344567889999999999999998 5555 01222288884321 0 011 222566666655
Q ss_pred cCCEEEEEEcc-------------------------------------------CCCce---EEEEccC-----------
Q psy5838 100 SDRGWYMCQVN-------------------------------------------TNPRI---SLTYNDH----------- 122 (215)
Q Consensus 100 ~d~G~Y~C~~~-------------------------------------------~~~~~---~~~~~~~----------- 122 (215)
|+| |+|.+. +.+.+ .+.|...
T Consensus 60 -d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~ 137 (450)
T 1z7z_I 60 -DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137 (450)
T ss_dssp -CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT
T ss_pred -CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc
Confidence 666 777653 34444 7777321
Q ss_pred --CeEEEEEcccCCCCCeEEEEEeecC-CCcc--------eeeEEEEEcC----CeEEecCCCcceeeecCCcEEEEEEe
Q psy5838 123 --RSWFLNIKNVQESDRGWYMCQVNTD-PMRS--------RQGYLQVVVP----PSIIDKDTSTDLVVREQANVTLNCKA 187 (215)
Q Consensus 123 --~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~--------~~~~l~v~~~----p~~~~~~~~~~~~~~~g~~~~l~C~~ 187 (215)
.+..|.|..++.+|+|.|+|.+.+. +... ....+.|... |.+.. ...+.+|+.+.|.|.+
T Consensus 138 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~-----~~~v~~G~~v~l~C~~ 212 (450)
T 1z7z_I 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-----PRVLEVDTQGTVVCSL 212 (450)
T ss_dssp TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC-----CSEEETTSEEEEEEEE
T ss_pred cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC-----ceeEEeCCcEEEEEEe
Confidence 2457999999999999999999653 2111 2223444322 22211 1468899999999999
Q ss_pred ccc-C--CCeEEEEeCCCcccc
Q psy5838 188 QGY-P--EPYVMWRREDGANLS 206 (215)
Q Consensus 188 ~~~-p--~~~i~W~~~~~~~~~ 206 (215)
.+. | .+.+.|++ ++..+.
T Consensus 213 ~g~~P~~~~~~~W~~-~~~~~~ 233 (450)
T 1z7z_I 213 DGLFPVSEAQVHLAL-GDQRLN 233 (450)
T ss_dssp ESCTTGGGCEEEEEE-TTEECC
T ss_pred eCCCCCCceEEEEeC-CCEeCC
Confidence 997 7 67899999 666543
No 100
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.61 E-value=1.8e-14 Score=104.92 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=85.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-ccEE-Eeeec-ee--eeCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QTIL-SIHHN-VI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+...|..+.+.+|++++|.|.+.+.+.+. +.|+|+.. ..+. ..... .. ....|+.....
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--------- 67 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNN-------LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS--------- 67 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---------
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCC-------EEEEEeCCCCCcEEEEEEcccccccccccEEEEcC---------
Confidence 44556788999999999999999887666 99998532 2211 00000 00 00123333221
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc---CCeEEecCC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV---PPSIIDKDT 169 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~p~~~~~~~ 169 (215)
.....|.|.+++.+|+|.|+|.+.+... ......+.|.. +|.+.....
T Consensus 68 ---------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~ 120 (213)
T 3d9a_L 68 ---------------------------GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP 120 (213)
T ss_dssp ---------------------------TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC
T ss_pred ---------------------------CCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECC
Confidence 1223466777777777777777754321 12223455554 565554322
Q ss_pred CcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 170 STDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.. ....|+.+.|.|.+.+ .|.+ .+.|++ +|..+..
T Consensus 121 ~~--~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~ 157 (213)
T 3d9a_L 121 SS--EQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN 157 (213)
T ss_dssp CH--HHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECT
T ss_pred Ch--hhcCCCcEEEEEEEeeecCCceEEEEEc-CCCcCcc
Confidence 21 2347899999999987 5665 899999 7776654
No 101
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.61 E-value=1.9e-15 Score=113.91 Aligned_cols=155 Identities=23% Similarity=0.343 Sum_probs=87.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEee---ccCCccceeeeEEEEEEecCCcc-----EEEeeeceee----eCCceEEEEc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVD---NLKGFKGLRIGWQVAWVRVDTQT-----ILSIHHNVIT----QNPRISLTYN 85 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~---~~~~~~~~~~~~~v~W~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~ 85 (215)
+.+...+..+.+.+|++++|.|.+. +.+.+. +.|++..... ++........ ...|+.+...
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 78 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDR-------VDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEE-------EEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEE-------EEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeec
Confidence 4566677789999999999999997 344444 8999964322 1111111111 1244444322
Q ss_pred -CCceEEEEEccceecCCEEEEEEccC------------------------------------------CCceEEEEcc-
Q psy5838 86 -DHRSWFLNIKNVQESDRGWYMCQVNT------------------------------------------NPRISLTYND- 121 (215)
Q Consensus 86 -~~~~~~l~i~~~~~~d~G~Y~C~~~~------------------------------------------~~~~~~~~~~- 121 (215)
...++.|.|.+++.+|+|.|+|.+.+ .|.+.+.|..
T Consensus 79 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~ 158 (268)
T 3mj6_A 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158 (268)
T ss_dssp TTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred CCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence 23457899999999999999999751 2456677743
Q ss_pred ---------------------------------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEc-
Q psy5838 122 ---------------------------------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVV- 160 (215)
Q Consensus 122 ---------------------------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~- 160 (215)
.....|.|.+++.+|+|.|+|.+.+. +.....+.|.|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 12456899999999999999999763 3444556677743
Q ss_pred CCeEEecCCCcceeeecCCcE
Q psy5838 161 PPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~ 181 (215)
+|.+.. .+....+..|+.+
T Consensus 239 ~p~~~~--~p~~~~~~~~q~~ 257 (268)
T 3mj6_A 239 EFQRTI--SPTPPTDKGQQGI 257 (268)
T ss_dssp ---------------------
T ss_pred CCeeee--CCCCCCCCcceec
Confidence 333333 2333334444444
No 102
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.61 E-value=1.2e-14 Score=108.29 Aligned_cols=144 Identities=21% Similarity=0.379 Sum_probs=84.5
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEE-eeec--e---eeeCCceEEEEcCCceEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILS-IHHN--V---ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~-~~~~--~---~~~~~~~~~~~~~~~~~~l 92 (215)
+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|.. +..... .... . ....+|+.+..+.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~------ 70 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPN-------LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQ------ 70 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCE-------EEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEE------
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCce-------EEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecC------
Confidence 44556789999999999999999876665 9999942 211110 0000 0 0111333333221
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-----CC--CcceeeEEEEEc-----
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-----DP--MRSRQGYLQVVV----- 160 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-----~~--~~~~~~~l~v~~----- 160 (215)
.....|.|.+++.+|+|.|.|.+.+ .. .......+.|..
T Consensus 71 -----------------------------~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~ 121 (245)
T 3nfj_J 71 -----------------------------DRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKV 121 (245)
T ss_dssp -----------------------------TTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGC
T ss_pred -----------------------------CCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCC
Confidence 2233466667777777777777654 11 112334566654
Q ss_pred -CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCccccc
Q psy5838 161 -PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLSY 207 (215)
Q Consensus 161 -~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~~ 207 (215)
+|.+... .+....+.+|+.+.|.|.+.+. |++ .+.|++ +|..+..
T Consensus 122 ~~P~v~~~-~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~l~~ 169 (245)
T 3nfj_J 122 FPPEVAVF-EPSEAEISHTQKATLVCLATGFFPDHVELSWWV-NGKEVHS 169 (245)
T ss_dssp BCCEEEEE-ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred CCCceEee-cCCcccccCCCceEEEEEEccCcCCCEEEEEEE-CCEECCC
Confidence 4554432 1222234569999999999884 545 689999 7877653
No 103
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.61 E-value=1.5e-15 Score=110.43 Aligned_cols=146 Identities=21% Similarity=0.383 Sum_probs=95.0
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCc-eEEEEcCCceEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPR-ISLTYNDHRSWFL 92 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 92 (215)
...+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+.... ...+ ....... +.+
T Consensus 6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~-~~~~~~~~-----~~~~~~~~~~~~---~~~ 69 (212)
T 2v9r_A 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKG-GERVETDK-----DDPRSHRMLLPS---GSL 69 (212)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCE-------EEEEET-TEECCCTT-----TCTTCSEEECTT---SCE
T ss_pred ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCE-------EEEEEC-CEEeeccc-----cccccceEEecC---CcE
Confidence 34578888889999999999999999999877776 999994 33321000 0000 0111111 112
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEEcCCeEEecCCC
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVVVPPSIIDKDTS 170 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~ 170 (215)
.+. .|.|.+++..|+|.|+|.+.+.... ...+.+.|...+..... .+
T Consensus 70 ~~~------------------------------~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~-~~ 118 (212)
T 2v9r_A 70 FFL------------------------------RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ-NP 118 (212)
T ss_dssp EES------------------------------SCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSB-CC
T ss_pred EEE------------------------------EEEecCCCcccCeEEEEEEECCCCceeecceEEEEEecccccee-CC
Confidence 211 1345677888999999998653321 34456666543322211 33
Q ss_pred cceeeecCCcEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy5838 171 TDLVVREQANVTLNCKA-QGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~ 207 (215)
....+..|+.+.|.|.+ .+.|.+.+.|++ ++..+..
T Consensus 119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~l~~ 155 (212)
T 2v9r_A 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDD 155 (212)
T ss_dssp CCEEEETTSCEEEECBCCCEESCCEEEEEE-TTEEECT
T ss_pred CceEecCCCcEEEEEecCCCCCCCEEEEEE-CCccCCC
Confidence 45568899999999999 889999999999 7776654
No 104
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.61 E-value=9.8e-15 Score=111.07 Aligned_cols=147 Identities=15% Similarity=0.294 Sum_probs=86.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc--EE-Eeeec---ee---eeCCceEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT--IL-SIHHN---VI---TQNPRISLTYN 85 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~--~~-~~~~~---~~---~~~~~~~~~~~ 85 (215)
..+.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|+. +.. .+ ..... .. ....|+.+..+
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 95 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATT-------MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA 95 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEE-------EEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCe-------EEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC
Confidence 456677778899999999999999997655444 9999964 221 11 11110 00 01244444432
Q ss_pred CCceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-------CcceeeEEEE
Q psy5838 86 DHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-------MRSRQGYLQV 158 (215)
Q Consensus 86 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v 158 (215)
....+ .|.|.+++.+|+|.|.|.+.+.. .......+.|
T Consensus 96 ~~~~~-----------------------------------sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V 140 (279)
T 2wbj_D 96 SLTLS-----------------------------------TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTV 140 (279)
T ss_dssp SSSEE-----------------------------------EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEE
T ss_pred CCCEE-----------------------------------EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEE
Confidence 22233 35566666666666666664410 0112234566
Q ss_pred Ec------CCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCcccc
Q psy5838 159 VV------PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLS 206 (215)
Q Consensus 159 ~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~ 206 (215)
.. +|.+... .+....+.+|+.+.|.|.+.+. |. +.+.|++ ||+.+.
T Consensus 141 ~~~~~~~~~P~v~~~-~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~ 194 (279)
T 2wbj_D 141 TEDLKNVFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH 194 (279)
T ss_dssp ESCGGGCBCCEEEEE-ECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE-TTEECC
T ss_pred ecCCCCCCCCEEEEE-CCCcccccCCCceEEEEEEeeEcCCCcEEEEEE-CCEECC
Confidence 53 4554432 1222234579999999999986 54 5899999 777654
No 105
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.61 E-value=2.9e-15 Score=111.62 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=56.9
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCc------ceeeEEEEEcC---CeEEecCCCcceeeecCCcEEEEEEecccCCCeEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMR------SRQGYLQVVVP---PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM 196 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~ 196 (215)
.|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+ |.+.. ..+....+.+|+.+.|.|.+.+.|.|.+.
T Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~-~~~~~~~v~~g~~v~L~C~~~g~p~p~v~ 169 (250)
T 2fbo_J 91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV-STAEVVQVDEGNDITMTCPCTDCANANVT 169 (250)
T ss_dssp CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEE-CCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEE-ecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence 4788888888889999988653322 23566777654 22222 23445667789999999999999999999
Q ss_pred EEeCCCcccc
Q psy5838 197 WRREDGANLS 206 (215)
Q Consensus 197 W~~~~~~~~~ 206 (215)
|++ ++..+.
T Consensus 170 W~k-~~~~~~ 178 (250)
T 2fbo_J 170 WYT-GPTFFE 178 (250)
T ss_dssp EEE-EEECSS
T ss_pred EEe-CCCccc
Confidence 999 665554
No 106
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.61 E-value=2.9e-14 Score=103.71 Aligned_cols=141 Identities=20% Similarity=0.306 Sum_probs=83.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE--EEeeecee--eeCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI--LSIHHNVI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+.. |..+.+.+|++++|.|.+.+.+.+. +.|+|+. +..+ +....... ....|+.....
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--------- 66 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSR-------MHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS--------- 66 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---------
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCC-------EEEEEECCCCCeEEEEEccccccCCccccEEEEec---------
Confidence 445 6788999999999999999877666 9999853 2221 11100000 01133333221
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc---CCeEEecCC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV---PPSIIDKDT 169 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~p~~~~~~~ 169 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|.. +|.+.....
T Consensus 67 ---------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~ 119 (210)
T 1lk3_L 67 ---------------------------GTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPP 119 (210)
T ss_dssp ---------------------------TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC
T ss_pred ---------------------------CCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECC
Confidence 1223466666666777777777654321 12223455543 455554322
Q ss_pred CcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 170 STDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.. .+..|+.+.|.|.+.| .|.+ .+.|++ +|..+..
T Consensus 120 ~~--~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~~~~ 156 (210)
T 1lk3_L 120 ST--EQLATGGASVVCLMNNFYPRDISVKWKI-DGTERRD 156 (210)
T ss_dssp CH--HHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCT
T ss_pred ch--hhccCCcEEEEEEEEeEeCCceEEEEEe-CCccCCC
Confidence 21 2347999999999987 4554 899999 7776543
No 107
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.61 E-value=1.5e-14 Score=107.79 Aligned_cols=145 Identities=18% Similarity=0.326 Sum_probs=84.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE---EEeeecee--ee---CCceEEEEcCCc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI---LSIHHNVI--TQ---NPRISLTYNDHR 88 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~---~~~~~~~~--~~---~~~~~~~~~~~~ 88 (215)
+.+...+..+.+.+|++|+|.| ..+.+.+. +.|+|.. +... ........ .. ++|+.+....
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-- 72 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLY-------FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD-- 72 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCE-------EEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT--
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCE-------EEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc--
Confidence 4566677889999999999999 44444554 9999842 2211 11110000 00 0333333221
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-----CCcceeeEEEEE----
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-----PMRSRQGYLQVV---- 159 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-----~~~~~~~~l~v~---- 159 (215)
.....|.|.+++.+|+|.|.|.+.+. ........+.|.
T Consensus 73 ---------------------------------~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~ 119 (245)
T 4ei6_B 73 ---------------------------------GSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK 119 (245)
T ss_dssp ---------------------------------TSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG
T ss_pred ---------------------------------CceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccC
Confidence 12345667777777777777776531 122233456665
Q ss_pred --cCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 160 --VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 160 --~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.+|.+... .+....+.+|+.+.|.|.+.+ .|.+ .+.|++ ||..+..
T Consensus 120 ~~~~p~~~~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~-~g~~l~~ 169 (245)
T 4ei6_B 120 NVFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS 169 (245)
T ss_dssp GCBCCEEEEE-CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred CCCCceEEEe-CCCcccccCCCceEEEEEEeeEeCCCeEEEEEE-CCEECCC
Confidence 34554432 222333557999999999988 4555 799999 7877653
No 108
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.61 E-value=3.4e-15 Score=97.39 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=66.3
Q ss_pred cccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceE
Q psy5838 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSW 90 (215)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
+.+...+|.|...+.++.+.+|+++.|.|.+.+.+.+. +.|+| ++..+ ..+.++.+..++ ..
T Consensus 7 ~~~~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~-------v~W~k-~g~~l--------~~~~~~~~~~~~-~~- 68 (107)
T 3knb_B 7 SGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPV-------VVWEK-GGQQL--------AASERLSFPADG-AE- 68 (107)
T ss_dssp ---CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEE-TTEEC--------CCCSSEECCEET-TE-
T ss_pred CCCCCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCE-------EEEEE-Ccccc--------cceeeEEEeecC-ce-
Confidence 44555679999999999999999999999999998887 99999 44433 223344333222 12
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 69 ----------------------------------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 69 ----------------------------------HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp ----------------------------------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred ----------------------------------EEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence 2356677777777777777755 3444455667776554
No 109
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.61 E-value=1.9e-15 Score=110.37 Aligned_cols=142 Identities=23% Similarity=0.415 Sum_probs=93.9
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+... ..........+ +.+.
T Consensus 6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~-------v~W~~~-g~~~~~~------~~~~~~~~~~~---~~~~ 68 (217)
T 2vr9_A 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT-------IEWFKD-GEPVSTN------EKKSHRVQFKD---GALF 68 (217)
T ss_dssp CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCE-------EEEEET-TEECCCS------SSSSSEEECTT---SCEE
T ss_pred ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCe-------EEEEEC-CcCccCC------CccceeEEecC---CceE
Confidence 34578899999999999999999999999877776 999994 4432110 00011111111 0111
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEEc-CCeEEecCCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVVV-PPSIIDKDTS 170 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~-~p~~~~~~~~ 170 (215)
..+.|.+++.+|+|.|+|.+.+.... .....+.|.. +|.+.. .+
T Consensus 69 -------------------------------~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~--~~ 115 (217)
T 2vr9_A 69 -------------------------------FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV--EP 115 (217)
T ss_dssp -------------------------------ESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSB--CC
T ss_pred -------------------------------EEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEE--CC
Confidence 01346777888888888888653222 2345566554 333332 23
Q ss_pred cceeeecCCcEEEEEEe-cccCCCeEEEEeCCCcccc
Q psy5838 171 TDLVVREQANVTLNCKA-QGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 171 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~ 206 (215)
....+..|+.+.|.|.+ .+.|.+.+.|++ +|..+.
T Consensus 116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~-~g~~~~ 151 (217)
T 2vr9_A 116 KDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLD 151 (217)
T ss_dssp CCEEECTTSCEEECCBCCCEESCCEEEEEE-TTEEEC
T ss_pred CccEEcCCCeEEEEEECCCCCCCCeEEEEE-CCcCCC
Confidence 45568899999999999 889999999999 777665
No 110
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.61 E-value=1.2e-14 Score=108.61 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=79.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeec--eeeeCCceEEEEcCCceEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHN--VITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 91 (215)
.+.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|+.. .. .+..... ......|+..... ...+.
T Consensus 4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~ 75 (250)
T 3esu_F 4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNY-------LNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS-GTDYS 75 (250)
T ss_dssp CCCEECSCSEEEECTTCCEEEEEEESSCCTTC-------EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEE
T ss_pred ceeEEecCCEEEeeCCCcEEEEEEecccCCce-------EEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC-CCEEE
Confidence 45566778889999999999999999887776 99999642 11 1110000 0111244433322 23445
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcC----------
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP---------- 161 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~---------- 161 (215)
|.|.+++.+|+|.|+|.+.+..... ......+.|..+
T Consensus 76 L~I~~v~~~D~G~Y~C~~~n~~~~~---------------------------------~~~~~~l~V~~~~~~~~~~~~~ 122 (250)
T 3esu_F 76 LTISNLEQEDIGTYFCQQGNTLPWT---------------------------------FGGGTKLEIRRGGGGSGGGGSG 122 (250)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCE---------------------------------ECCCEEEEEC------------
T ss_pred EEEccCChhhCEEEEEEEeeCCCce---------------------------------ECCCEEEEEECCCCcccccccc
Confidence 5555555555555555544321111 111122333221
Q ss_pred ---------CeEEecCCCcceeeecCCcEEEEEEecccC--CCeEEEEeC
Q psy5838 162 ---------PSIIDKDTSTDLVVREQANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 162 ---------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
+.... .+....+.+|+++.|.|.+.+.| .+.+.|++.
T Consensus 123 ~~~~~~~~~~~~~~--~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 170 (250)
T 3esu_F 123 GGGSGGGGSEVQLQ--QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ 170 (250)
T ss_dssp ------------CE--ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred cccccCcccceEEe--cCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence 11111 23345688999999999998876 678999994
No 111
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.60 E-value=1.8e-14 Score=105.53 Aligned_cols=137 Identities=20% Similarity=0.364 Sum_probs=80.3
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEEEe-eec--------eeeeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTILSI-HHN--------VITQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +..+... ... ......|+.+..+. ...
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~- 78 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYG-------MNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATT- 78 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSE-------EEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTE-
T ss_pred CCCeEecCCCcEEEEEEEeCcccccce-------EEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCE-
Confidence 4567899999999999998754 344 9999964 3322111 000 00012344433221 122
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEEcC----
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVVVP---- 161 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~~---- 161 (215)
..|.|.+++.+|+|.|.|.+.+.. .......+.|...
T Consensus 79 ----------------------------------~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~ 124 (219)
T 1c1e_H 79 ----------------------------------AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTP 124 (219)
T ss_dssp ----------------------------------EEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBC
T ss_pred ----------------------------------EEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCC
Confidence 345566666666666666665432 1112345566542
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANL 205 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~ 205 (215)
|.+..... ...+.+|+.+.|.|.+.+ .|.| .+.|++ +|..+
T Consensus 125 P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~ 167 (219)
T 1c1e_H 125 PSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLSS 167 (219)
T ss_dssp CEEEEECC--CSSSCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBCT
T ss_pred CeEEEecC--ccccccCCeEEEEEEcccccCCCeEEEEEe-CCccc
Confidence 44443221 223568999999999998 8988 999999 66553
No 112
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=105.33 Aligned_cols=127 Identities=17% Similarity=0.313 Sum_probs=77.4
Q ss_pred EeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEE
Q psy5838 30 TVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 108 (215)
-.|+.+.|.|.+.+. +.+. +.|+++ +..+ ....++.+...+ ...
T Consensus 15 c~~~~~~l~C~~~~~~p~~~-------i~W~~~-g~~i--------~~~~~~~~~~~~-~~~------------------ 59 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLK-------VNWSHN-GSAI--------RYSDRVKTGVTG-EQI------------------ 59 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCE-------EEEEET-TEEC--------CCCSSEEEEEET-TEE------------------
T ss_pred EcCceEEEEEEEeccCCCce-------EEEEEC-CEEc--------cCCCeEEEEEeC-CEE------------------
Confidence 367788888888874 3555 999994 4433 223444433322 222
Q ss_pred ccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEc--------------------CCeEEec
Q psy5838 109 VNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV--------------------PPSIIDK 167 (215)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~--------------------~p~~~~~ 167 (215)
.|.|.+++.+|+|.|+|.+.+.. .....+.+.|.. .|.+...
T Consensus 60 -----------------~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 122 (212)
T 2r15_A 60 -----------------WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 122 (212)
T ss_dssp -----------------EEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEB
T ss_pred -----------------EEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCccccc
Confidence 35566666666777777765421 112222222211 3333322
Q ss_pred CCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccccCC
Q psy5838 168 DTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210 (215)
Q Consensus 168 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~ 210 (215)
.+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+....+
T Consensus 123 -~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~~ 163 (212)
T 2r15_A 123 -LPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDH 163 (212)
T ss_dssp -CCSEEEEETTCCEEEEEEEECSSCCEEEEEE-TTEEECCCSS
T ss_pred -CCCcEEEccCCeEEEEEEEcCCCCceEEEEE-CCeECccCCC
Confidence 2344568899999999999999999999999 7877765443
No 113
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.60 E-value=1.2e-13 Score=112.56 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=105.9
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeec------eeeeCCceEEEEcC-C
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHN------VITQNPRISLTYND-H 87 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~------~~~~~~~~~~~~~~-~ 87 (215)
+..+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +.. ++..... ......|+.+..+. .
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 77 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYSFTSYG-------LHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSA 77 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCCCCCce-------EEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCC
Confidence 4456788999999999999998653 333 9999963 222 1111100 01124677766542 3
Q ss_pred ceEEEEEccceecCCEEEEEEccC----------------------------------------------------CCc-
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNT----------------------------------------------------NPR- 114 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~----------------------------------------------------~~~- 114 (215)
..+.|.|.+++.+|+|.|+|.+.+ .|.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~ 157 (475)
T 1iga_A 78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQE 157 (475)
T ss_pred CeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCC
Confidence 567999999999999999998632 122
Q ss_pred -eEEEEccCC---------------------eEEEEEcccCCCCCeEEEEEeecCCCcceeeEEE--EE-----------
Q psy5838 115 -ISLTYNDHR---------------------SWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQ--VV----------- 159 (215)
Q Consensus 115 -~~~~~~~~~---------------------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~--v~----------- 159 (215)
+.+.|.... ...|.|..+...|+|.|+|.+.+.........+. |.
T Consensus 158 p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~ 237 (475)
T 1iga_A 158 PLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTP 237 (475)
T ss_pred ceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccccccccc
Confidence 256663211 0135666777788999999997654332222333 21
Q ss_pred -------cCCeEEecCCCcceeeecCCcEEEEEEecccCC---CeEEE
Q psy5838 160 -------VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPE---PYVMW 197 (215)
Q Consensus 160 -------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W 197 (215)
.+|.+... .+....+.+|+++.|.|.+.+.++ +.++|
T Consensus 238 ~~~~~~~~~p~v~~~-~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W 284 (475)
T 1iga_A 238 PTPSPSCCHPRLSLH-RPALEDLLLGSEANLTCTLTGLRDASGVTFTW 284 (475)
T ss_pred ccCCCCCCCcEEEEc-CCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence 13333222 222222578999999999998744 58999
No 114
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.60 E-value=6.1e-15 Score=108.61 Aligned_cols=151 Identities=22% Similarity=0.397 Sum_probs=90.2
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecCCc----cEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVDTQ----TILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
..|..+.+.+|+++.|.|.+.+.+. +. +.|++++.. .+... ......+..... .
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~~~~~~~~~~~~~~~----~~~~~~~~~r~~----------~ 63 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYM-------LEWFLTDRSGARPRLASA----EMQGSELQVTMH----------D 63 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEE-------EEEEEECTTCCCCEEEEE----EEETTEEEEEEC----------C
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceE-------EEEEEeCCCceeEEEEec----cccCCccccccc----------c
Confidence 3467889999999999999998774 44 999985433 11100 001111100000 0
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC--CCcceeeEEEEEcCCeEEecC-CCcce
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSIIDKD-TSTDL 173 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~-~~~~~ 173 (215)
+. ...+...+ ..+..|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|...... .+...
T Consensus 64 ~~-----------~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~ 128 (231)
T 2pet_A 64 TR-----------GRSPPYQL----DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128 (231)
T ss_dssp CS-----------CCSSCCEE----CTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSC
T ss_pred cc-----------cccccccc----CCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcce
Confidence 00 00000000 00112778888888888888888553 344555678888775432211 23344
Q ss_pred eeecCCcE-EEEEEe-cccCCCeEEEEeCCCccccccC
Q psy5838 174 VVREQANV-TLNCKA-QGYPEPYVMWRREDGANLSYNG 209 (215)
Q Consensus 174 ~~~~g~~~-~l~C~~-~~~p~~~i~W~~~~~~~~~~~~ 209 (215)
.+.+|+.+ .|.|.+ .+.|.|.+.|++ +|..+....
T Consensus 129 ~~~~g~~~~~l~C~~~~~~p~p~i~W~~-~~~~~~~~~ 165 (231)
T 2pet_A 129 SVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVPV 165 (231)
T ss_dssp CTTCCSEEEEEEEEEEEEBSCCEEEEEE-TTEECCCCS
T ss_pred eecCCCceEEEEEEeECcccCCEEEEEE-CCccCcccc
Confidence 46688887 999999 889999999999 777765443
No 115
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.60 E-value=3.8e-14 Score=105.30 Aligned_cols=145 Identities=18% Similarity=0.315 Sum_probs=84.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EE-Eeeecee----eeCCceEEEEcCCce
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--IL-SIHHNVI----TQNPRISLTYNDHRS 89 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~-~~~~~~~----~~~~~~~~~~~~~~~ 89 (215)
+.+...+..+.+.+|++|+|.|.+.+ +.+. +.|+|... .. ++ ....... ...+|+.+....
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--- 71 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSN-------VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD--- 71 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCT-TCCE-------EEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECT---
T ss_pred cccccCcceeeecCCCcEEEEEEeCC-CCce-------EEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCC---
Confidence 34556677899999999999999875 3444 99999432 11 11 1110000 001233333222
Q ss_pred EEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec--C--CCcceeeEEEEE------
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT--D--PMRSRQGYLQVV------ 159 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~--~--~~~~~~~~l~v~------ 159 (215)
.....|.|.+++.+|+|.|.|.+.. . ........+.|.
T Consensus 72 --------------------------------~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~ 119 (240)
T 3q5y_A 72 --------------------------------DYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNV 119 (240)
T ss_dssp --------------------------------TSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGC
T ss_pred --------------------------------CCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCC
Confidence 2234466677777777777777642 1 112233345555
Q ss_pred cCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.+|.+... .+....+.+|+.+.|.|.+.+ .|.+ .+.|++ +|..+..
T Consensus 120 ~~p~~~~~-~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~l~~ 167 (240)
T 3q5y_A 120 TPPKVSLF-EPSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVHS 167 (240)
T ss_dssp BCCEEEEE-CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred CCCeeEEe-CCchhhcccCCceEEEEEEeeEECCCeEEEEEE-CCEECcC
Confidence 34544432 223334557999999999988 5666 789999 7877643
No 116
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.60 E-value=3.6e-15 Score=115.72 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=96.5
Q ss_pred CcEEEEEEeecc-C-CccceeeeEEEEEEecCCccEEEeee--ceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEE
Q psy5838 33 RDALLACVVDNL-K-GFKGLRIGWQVAWVRVDTQTILSIHH--NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108 (215)
Q Consensus 33 ~~v~L~C~~~~~-~-~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 108 (215)
++++|.|.+.+. + .+. +.|+| ++..+..... .....++++.. ...|.|.++...|+|.|+|.
T Consensus 25 ~~v~L~C~~~g~~P~~~~-------v~W~k-~g~~l~~~~~~~~~~~~~g~~~~------~s~l~i~~~~~~d~g~Y~C~ 90 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQ-------ITWLE-DGQVMDVDLSTASTTQEGELAST------QSELTLSQKHWLSDRTYTCQ 90 (323)
T ss_dssp SEEEEEEEEEEECCCCEE-------EEEEE-TTEECCGGGEEEEEEEETTEEEE------EEEEEEEHHHHHTTCCEEEE
T ss_pred CcEEEEEEEeCeECCCeE-------EEEEE-CCEEcccceecCCcCccCCcEEE------EEEEEEcHHHcCCCCcEEEE
Confidence 699999999875 2 344 99999 4443321000 00001222211 23577888888899999998
Q ss_pred ccC-----------------------------------------------CCce---EEEEccC----------------
Q psy5838 109 VNT-----------------------------------------------NPRI---SLTYNDH---------------- 122 (215)
Q Consensus 109 ~~~-----------------------------------------------~~~~---~~~~~~~---------------- 122 (215)
|.+ .|.+ .+.|...
T Consensus 91 a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~ 170 (323)
T 2wqr_A 91 VTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQR 170 (323)
T ss_dssp EEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECT
T ss_pred EEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCC
Confidence 652 2323 7777321
Q ss_pred -----CeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEE------EcCCeEEecCCCcceeeecCCcEEEEEEecc-c
Q psy5838 123 -----RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV------VVPPSIIDKDTSTDLVVREQANVTLNCKAQG-Y 190 (215)
Q Consensus 123 -----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v------~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~ 190 (215)
....|.|.+++.+|+|.|+|.+.+... .....+.| ..+|.+........ ...|+.+.|.|.+.| .
T Consensus 171 ~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~l~C~~~g~~ 247 (323)
T 2wqr_A 171 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL-PRALMRSTTKTSGPRAAPEVYAFATPEW--PGSRDKRTLACLIQNFM 247 (323)
T ss_dssp TSCEEEEEEEECCHHHHHTTCCEEEEEECTTS-SSCEEEEECCCCSCCBCCEEEEEECCCC--TTCTTEEEEEEEEEEEB
T ss_pred CCCEEEEEEEEECHHHccCCCCEEEEEECCCC-CCCeeeEEEccCCCCCCCEEEEeCCChH--HhcCCcEEEEEEeeeee
Confidence 012588999999999999999976432 22223333 24566554322211 123999999999998 4
Q ss_pred CCC-eEEEEeCCCccccc
Q psy5838 191 PEP-YVMWRREDGANLSY 207 (215)
Q Consensus 191 p~~-~i~W~~~~~~~~~~ 207 (215)
|++ .+.|++ ||..+..
T Consensus 248 p~~~~v~W~k-~g~~l~~ 264 (323)
T 2wqr_A 248 PEDISVQWLH-NEVQLPD 264 (323)
T ss_dssp SSCCEEEEEE-TTEECCG
T ss_pred CCCcEEEEEE-CCEECCC
Confidence 544 799999 7877653
No 117
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.59 E-value=2.1e-14 Score=108.67 Aligned_cols=147 Identities=18% Similarity=0.326 Sum_probs=85.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE--E-EeeeceeeeC----C-ceEEEEcC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI--L-SIHHNVITQN----P-RISLTYND 86 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~--~-~~~~~~~~~~----~-~~~~~~~~ 86 (215)
....+..++..+.+.+|++|+|.|.+.+ +.+. +.|+|.. +... + .......... . |+.+....
T Consensus 26 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 97 (270)
T 3qib_D 26 GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPV-------VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPS 97 (270)
T ss_dssp --CCCEEECSEEEEETTSCEEEEEECCT-TCCE-------EEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCT
T ss_pred cceeEEeCCCeEEEcCCCCEEEEEEecC-CCce-------EEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCC
Confidence 3466777788899999999999999865 3344 9999843 2211 1 1110000000 0 33333221
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEEc-
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVVV- 160 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~- 160 (215)
.. +..|.|.+++.+|+|.|.|.+.+.. .......+.|..
T Consensus 98 ~~-----------------------------------~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~ 142 (270)
T 3qib_D 98 NS-----------------------------------PCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED 142 (270)
T ss_dssp TS-----------------------------------CEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC
T ss_pred Cc-----------------------------------EEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc
Confidence 12 2346666666667777777665311 112234566654
Q ss_pred -----CCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 161 -----PPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 161 -----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
+|.+... .+....+..|+.+.|.|.+.+ .|.+ .+.|++ +|..+..
T Consensus 143 ~~~~~~P~v~~~-~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~ 194 (270)
T 3qib_D 143 LKNVFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS 194 (270)
T ss_dssp STTCBCCEEEEE-ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred cccccCCceEEE-CCCccccccCCceEEEEEecceeCCCeEEEEEE-CCEECCC
Confidence 4554432 122223456999999999988 6766 799999 7877653
No 118
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.59 E-value=1.3e-14 Score=105.16 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=54.6
Q ss_pred EEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCC---eEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPP---SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p---~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
.|.|.+++.+|+|.|+|.+.+.. .....+.+.|..++ .+.. .... +.+|+.+.|.|.+.+.| +.+.|++
T Consensus 72 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~- 145 (208)
T 3r4d_A 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV--TNTT--VKELDSVTLTCLSNDIG-ANIQWLF- 145 (208)
T ss_dssp CEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEE--SCSS--CCTTCCEEEEEECSCTT-CEEEEEE-
T ss_pred eEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEec--CCce--EeeCCCEEEEEECCCCC-CceEEEE-
Confidence 37778888888888888886542 33444557776553 3332 1222 78899999999999976 7999999
Q ss_pred CCccccccC
Q psy5838 201 DGANLSYNG 209 (215)
Q Consensus 201 ~~~~~~~~~ 209 (215)
+|..+....
T Consensus 146 ~g~~l~~~~ 154 (208)
T 3r4d_A 146 NSQSLQLTE 154 (208)
T ss_dssp TTEECCCCS
T ss_pred CCEeCCCCC
Confidence 787776443
No 119
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.59 E-value=8.4e-15 Score=108.59 Aligned_cols=140 Identities=19% Similarity=0.361 Sum_probs=87.1
Q ss_pred CCCcccCC----CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 16 LMPHFAEP----IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 16 ~~p~~~~~----~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
..|.|..+ +..+.+.+|+++.|.|.+.+.+.+. +.|+++ +..+.... ......... ..+
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~-~~~~~~~~-----~~~~~~~~~---~~~- 72 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS-------ISWLKN-GREFRGEH-----RIGGIKLRH---QQW- 72 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCE-------EEEEET-TEECCGGG-----STTCCEEEG---GGT-
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCce-------eEEEEC-CcccCCCC-----cccceeeec---cce-
Confidence 35666654 4578899999999999999887776 999994 44321000 000001110 112
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcC----CeEEe
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVP----PSIID 166 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~----p~~~~ 166 (215)
.|.|.+++.+|+|.|+|.+.+. +.......+.|... |.+..
T Consensus 73 ----------------------------------~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~ 118 (241)
T 3grw_A 73 ----------------------------------SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 118 (241)
T ss_dssp ----------------------------------EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEE
T ss_pred ----------------------------------EEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeec
Confidence 3556666777777777777543 23344455666542 22222
Q ss_pred cCCCcceeeecCCcEEEEEEecccCCCeEEEEeC---CCccccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE---DGANLSY 207 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~---~~~~~~~ 207 (215)
..+....+.+|+.+.|.|.+.+.|.+.+.|++. +|..+..
T Consensus 119 -~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~ 161 (241)
T 3grw_A 119 -GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 161 (241)
T ss_dssp -CTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCT
T ss_pred -CCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCC
Confidence 234455688999999999999999999999993 4444443
No 120
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.59 E-value=2.1e-14 Score=104.57 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=81.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCC---ccceeeeEEEEEEecC-CccEEE-ee-ecee--eeCCceEEEEcCCceEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKG---FKGLRIGWQVAWVRVD-TQTILS-IH-HNVI--TQNPRISLTYNDHRSWF 91 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~---~~~~~~~~~v~W~~~~-~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~ 91 (215)
+.. |..+.+.+|++++|.|.+.+.+. +. +.|+|+. +..+.. .. .... ....|+.....
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------ 69 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNY-------ANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI------ 69 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGC-------CEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE------
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCe-------EEEEEeCCCCCceEEEEcCcccCCcccccEEEEee------
Confidence 445 67889999999999999987663 44 8999853 222211 00 0000 01123322221
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEE----cCCeEE
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVV----VPPSII 165 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~----~~p~~~ 165 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|. .+|.+.
T Consensus 70 ------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~ 119 (212)
T 1q0x_L 70 ------------------------------GDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVT 119 (212)
T ss_dssp ------------------------------TTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEE
T ss_pred ------------------------------CCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeE
Confidence 1223466666777777777777654321 1222345553 355555
Q ss_pred ecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 166 DKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 166 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
..... ..+..|+.+.|.|.+.+. |++ .+.|++ +|..+.
T Consensus 120 ~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~ 159 (212)
T 1q0x_L 120 LFPPS--SEELSTAKATLVCTITDFYPGVVTVDWKV-DGTPVT 159 (212)
T ss_dssp EECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred EeCCC--HHHccCCcEEEEEEEEEEeCCCeEEEEEE-CCEeCC
Confidence 43221 123468999999999885 443 899999 777664
No 121
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.59 E-value=6.2e-14 Score=104.46 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=84.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecC-Ccc---EEEeeec---eee---eCCceEEEEc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVD-TQT---ILSIHHN---VIT---QNPRISLTYN 85 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~---~~~---~~~~~~~~~~ 85 (215)
+.+...+..+.+.+|++|+|.|.+.+. +.+. +.|+|+. +.. ++..... ... .++|+.+..+
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 74 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATS-------VYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI 74 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSC-------EEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCce-------EEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEec
Confidence 345667788999999999999999875 3344 9999964 221 1111100 000 2334443322
Q ss_pred CCceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--C------cceeeEEE
Q psy5838 86 DHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--M------RSRQGYLQ 157 (215)
Q Consensus 86 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~------~~~~~~l~ 157 (215)
.. .....|.|.+++.+|+|.|.|.+.+.. . ......|.
T Consensus 75 ~~----------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~ 120 (242)
T 1hxm_B 75 PE----------------------------------TSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLI 120 (242)
T ss_dssp TT----------------------------------TTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEE
T ss_pred CC----------------------------------CcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEE
Confidence 10 122346666666677777777664321 0 11234566
Q ss_pred EEcC-------CeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCc-cc
Q psy5838 158 VVVP-------PSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGA-NL 205 (215)
Q Consensus 158 v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~-~~ 205 (215)
|... |...+.. +....+.+|+.+.|.|.+.+. |. +.+.|++ ++. .+
T Consensus 121 V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~~~~~l 176 (242)
T 1hxm_B 121 ITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEE-KKSNTI 176 (242)
T ss_dssp EESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEE-SSSCCC
T ss_pred EcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEECCCeEEEEEc-CCCEee
Confidence 7652 3333221 222335679999999999885 65 6899999 554 44
No 122
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=104.56 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEEEeeece-----e-eeC----CceEEEEcCCceEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTILSIHHNV-----I-TQN----PRISLTYNDHRSWF 91 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~-~~~----~~~~~~~~~~~~~~ 91 (215)
.|..+.+.+|++|+|.|.+.+ .+.+. +.|+++ +..+....... . ..+ +|+.+.
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-------- 67 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNF-------ITWLFN-ETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-------- 67 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCE-------EEEEET-TEEEEEEECCSSSCCEEEECCHHHHTTEEEC--------
T ss_pred CCeEEEEEecCeEEEeccCCCcccccE-------EEEEEC-CEEEEEEecccCCCCceeecCccccccEEEC--------
Confidence 456789999999999999875 33344 999995 43332111100 0 000 122211
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEcCCeEEecCCC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPSIIDKDTS 170 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~ 170 (215)
.+..|.|.+++.+|+|.|.|.+.+.. .....+.|.|..++........
T Consensus 68 -------------------------------~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~ 116 (193)
T 2if7_A 68 -------------------------------QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH 116 (193)
T ss_dssp -------------------------------TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEEC
T ss_pred -------------------------------CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecC
Confidence 11246777777788888888875532 2334566777765543322111
Q ss_pred cceeeecCC-cEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy5838 171 TDLVVREQA-NVTLNCKAQGY-PEPYVMWRREDGANLS 206 (215)
Q Consensus 171 ~~~~~~~g~-~~~l~C~~~~~-p~~~i~W~~~~~~~~~ 206 (215)
. .....|. ++.|.|.+.+. |.+.+.|++ +|..+.
T Consensus 117 ~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~-~g~~l~ 152 (193)
T 2if7_A 117 S-QLFQNMTCELHLTCSVEDADDNVSFRWEA-LGNTLS 152 (193)
T ss_dssp C-C---CSSEEEEEEEEEESCCTTCEEEEEE-TTEEEE
T ss_pred c-eeecCCCceEEEEEEEecCCCceEEEEEe-CCEEcC
Confidence 1 1233465 89999999985 578999999 776543
No 123
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=106.37 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=86.4
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
.++.+.+.+|++++|.|.+.+.+.+.... +.|+|.+........ . ...... ...+. ....
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~----V~W~k~~~~~~~~~~-~--~~~~~~----------~~~~~---~~~~ 64 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQ----VAWARVDAGEGAQEL-A--LLHSKY----------GLHVS---PAYE 64 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEE----EEEEEECSSSCEEEE-E--EEETTT----------EEEEC---GGGT
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccE----EEEEECCCCCCceeE-E--EecCCC----------CeEeC---cccc
Confidence 45689999999999999999876654332 889996433211000 0 000000 00100 0011
Q ss_pred EEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEEcCCeEEecCCCcceeeecCCc
Q psy5838 103 GWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQAN 180 (215)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~ 180 (215)
|++.+.... ....+..|.|.+++.+|+|.|.|.+.+.... .....+.+..++..... ......+..|..
T Consensus 65 ~r~~~~~~~--------~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 135 (218)
T 4frw_A 65 GRVEQPPPP--------RNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLN-PGPALEEGQGLT 135 (218)
T ss_dssp TTEECCSSC--------CCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEE-ECSCEETTCCSE
T ss_pred ceEEEeccc--------ccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceee-eeeeeeeeeccc
Confidence 111111000 0112345788888888889999987543222 22223344433332221 233445678999
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 181 VTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 181 ~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+.+.|.+.+.|.|.+.|++ ++..+.
T Consensus 136 ~~~~c~~~g~p~p~i~W~~-~~~~~~ 160 (218)
T 4frw_A 136 LAASCTAEGSPAPSVTWDT-EVKGTT 160 (218)
T ss_dssp EEEEEEEEEBSCCEEEEEE-SSCCEE
T ss_pred cceeeeccCCcCceEEEEE-CCcccc
Confidence 9999999999999999999 665543
No 124
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.58 E-value=6.2e-14 Score=104.17 Aligned_cols=141 Identities=17% Similarity=0.280 Sum_probs=82.2
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE---EEeeecee----eeCCceEEEEcCCceEEE
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI---LSIHHNVI----TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~l 92 (215)
...+..+.+.+|++|+|.|.+.. +.+. +.|+|+. +..+ ........ ....|+.+..+..
T Consensus 3 ~q~p~~v~v~~G~~v~L~C~~~~-~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~----- 69 (238)
T 1bec_A 3 TQSPRNKVAVTGGKVTLSCQQTN-NHNN-------MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQ----- 69 (238)
T ss_dssp EEECSEEEEETTCCEEEEEEESS-CCSE-------EEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSS-----
T ss_pred ccCCCeeEEeCCCcEEEEEEeCC-CCce-------EEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCC-----
Confidence 44567889999999999999853 3444 9999964 2221 11110000 0123333332111
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC------CcceeeEEEEEc------
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP------MRSRQGYLQVVV------ 160 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~------ 160 (215)
....|.|.+++.+|+|.|.|.+.+.. .......|.|..
T Consensus 70 ------------------------------~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~ 119 (238)
T 1bec_A 70 ------------------------------EQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVT 119 (238)
T ss_dssp ------------------------------SEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCB
T ss_pred ------------------------------CEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCC
Confidence 22346666666677777777765431 011223466654
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
+|.+... .+....+.+|+.+.|.|.+.+. |.+ .+.|++ ||..+.
T Consensus 120 ~P~v~~~-~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~~~ 165 (238)
T 1bec_A 120 PPKVSLF-EPSKAEIANKQKATLVCLARGFFPDHVELSWWV-NGKEVH 165 (238)
T ss_dssp CCEEEEE-CCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE-TTEEEC
T ss_pred CCceEEE-CCChHHcccCCceEEEEEEeeEeCCCcEEEEEE-CCEECC
Confidence 4555443 2222335679999999999985 755 899999 777654
No 125
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.58 E-value=1.2e-14 Score=103.16 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=50.9
Q ss_pred EEEcccCCCCCeEEEEEeecC-CCc--ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCc
Q psy5838 127 LNIKNVQESDRGWYMCQVNTD-PMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 203 (215)
|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|..++... . ....+.++.|.|.+.+.|.|.+.|++ +|.
T Consensus 63 L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p------~-i~~~~~~v~L~C~~~g~p~p~i~W~~-~g~ 134 (176)
T 1hng_A 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP------M-IYWECSNATLTCEVLEGTDVELKLYQ-GKE 134 (176)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC------E-EEEETTTTEEEEECSSCSSCEEEEEE-TTE
T ss_pred EEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC------E-EEecCCcEEEEEEecCCCCcEEEEEE-CCE
Confidence 667777778888888888653 332 444566666543211 1 12335579999999999999999999 887
Q ss_pred cccccC
Q psy5838 204 NLSYNG 209 (215)
Q Consensus 204 ~~~~~~ 209 (215)
.+....
T Consensus 135 ~l~~~~ 140 (176)
T 1hng_A 135 HLRSLR 140 (176)
T ss_dssp EEEEES
T ss_pred ECCCCC
Confidence 776543
No 126
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.58 E-value=1.3e-14 Score=105.91 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=79.9
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeec-------eeeeCCceEEEE------cCCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN-------VITQNPRISLTY------NDHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.+.+.... +.|+|+++..+...... ......+..... ....++
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~----V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQ----VTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDA 83 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEE----EEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeE----EEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcE
Confidence 4578899999999999998876654332 89999665543322111 001112222211 122457
Q ss_pred EEEEccceecCCEEEEEEccC--------------------------------------------CCceEEEEccC----
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT--------------------------------------------NPRISLTYNDH---- 122 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~---- 122 (215)
+|.|.+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~ 163 (225)
T 4fmk_A 84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE 163 (225)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence 899999999999999998752 34455555221
Q ss_pred -----------C----eEEEEEcccCCCCCeEEEEEeecC
Q psy5838 123 -----------R----SWFLNIKNVQESDRGWYMCQVNTD 147 (215)
Q Consensus 123 -----------~----~~~l~i~~~~~~d~G~Y~C~~~~~ 147 (215)
. ...|.|..++.+|+|.|+|.|.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~ 203 (225)
T 4fmk_A 164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHE 203 (225)
T ss_dssp EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcC
Confidence 1 235899999999999999999874
No 127
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.58 E-value=2.1e-15 Score=110.55 Aligned_cols=142 Identities=28% Similarity=0.445 Sum_probs=83.2
Q ss_pred CceEEEeCCcEEEEEEeeccCC--ccceeeeEEEEEEecCCccEEEeeec-ee---eeCCceEEEEcCCceEEEEEccce
Q psy5838 25 PNVTVTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRVDTQTILSIHHN-VI---TQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
..+.+.+|++++|.|.+.+.+. ..... +.|++++....+..... .. ...+|+.+.... .
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~----v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~----------~- 67 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLN----LIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDL----------L- 67 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEE----EEEEETTTCCEEEEEETTEEEEESSCSCEECCTTT----------G-
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceE----EEEEECCCccEEEEEcCCcccccceeCcEEEeccc----------c-
Confidence 3567889999999999987643 11122 89999654432221111 00 001111111100 0
Q ss_pred ecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcC---CeEEecCCCcceee
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP---PSIIDKDTSTDLVV 175 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~ 175 (215)
...+..|.|.+++.+|+|.|+|.+.+.+.....+.+.|..+ |.+.. .....+
T Consensus 68 ----------------------~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~---~~~~~v 122 (222)
T 4i0k_A 68 ----------------------VQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTL---EPNKDL 122 (222)
T ss_dssp ----------------------GGTBCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEEC---CC----
T ss_pred ----------------------cCCeEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEe---CCCcee
Confidence 00123477888888888888888865544455556666654 33332 223356
Q ss_pred ecCCcEEEEEEe-cccCCCeEEEEeCCCcccc
Q psy5838 176 REQANVTLNCKA-QGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 176 ~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~ 206 (215)
.+|+.+.|.|.+ .+.|.+.+.|+++++..+.
T Consensus 123 ~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~ 154 (222)
T 4i0k_A 123 RPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT 154 (222)
T ss_dssp -CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred cCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence 789999999999 7899999999996555543
No 128
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.58 E-value=3.6e-14 Score=101.68 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=80.8
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...|.. .+.+|++|+|.|.+.+.+ .. +.|+| ++..+.... ... ......
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~-~~-------~~w~k-~g~~~~~~~------~~~----~~~~~~------ 56 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNYGA-VE-------YQLHF-EGSLFAVDR------PKP----PERINK------ 56 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTC-CE-------EEEEE-TTEEEEEEC------CSS----CTTCCE------
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCCCC-CE-------EEEEE-CCCcccccc------ccc----CCCcce------
Confidence 35677766666 789999999999987542 33 89999 444332100 000 000112
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC---CCcceeeEEEEEc---CCeEEecCC
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD---PMRSRQGYLQVVV---PPSIIDKDT 169 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~---~p~~~~~~~ 169 (215)
..|.|.+++.+|+|.|+|.+.+. ...+..+.|.|.. +|.+...
T Consensus 57 -----------------------------~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~-- 105 (188)
T 1oll_A 57 -----------------------------VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH-- 105 (188)
T ss_dssp -----------------------------EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEE--
T ss_pred -----------------------------eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEEC--
Confidence 23556666667777777776542 1234456666663 4555432
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+ ...+.+|+++.|.|.+.+. .+.+.|++ +|..+.
T Consensus 106 p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k-~g~~~~ 139 (188)
T 1oll_A 106 P-GPEVISGEKVTFYCRLDTA-TSMFLLLK-EGRSSH 139 (188)
T ss_dssp S-CSEEETTCEEEEEEECSSS-CSEEEEEE-ESSSCE
T ss_pred C-CCccccCCEEEEEEEcCCC-CCEEEEEE-CCcccc
Confidence 2 3457899999999998764 56899999 665543
No 129
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.58 E-value=9.1e-14 Score=104.29 Aligned_cols=155 Identities=13% Similarity=0.172 Sum_probs=81.8
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecC-Ccc---EEEee-e-----ceeeeCCceEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVD-TQT---ILSIH-H-----NVITQNPRISL 82 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~-~~~---~~~~~-~-----~~~~~~~~~~~ 82 (215)
...|.+...+..+.+.+|++|+|.|.+.+. +.+. +.|+|.. +.. +.... . .......|+.+
T Consensus 4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 76 (256)
T 3juy_B 4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFT-------VHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTF 76 (256)
T ss_dssp ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEE
T ss_pred ccceEEEEecCCceecCCCeEEEEEEeecccccCce-------EEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEE
Confidence 345777788899999999999999999873 3344 9999853 221 11111 0 00011245554
Q ss_pred EEcC-CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcC
Q psy5838 83 TYND-HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP 161 (215)
Q Consensus 83 ~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~ 161 (215)
..+. ....+|.|.+++.+|+|.|+|.+.+...... ...... ..........+.|..+
T Consensus 77 ~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~------------~~~~~~----------~~~~~~~~~~l~V~~~ 134 (256)
T 3juy_B 77 TADTSANTAYMELRSLRSADTAVYYCARVGEWGWDD------------SPYDNY----------YMDVWGKGTTVIVSSG 134 (256)
T ss_dssp EEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTC------------CTTTTC----------SCCEECCCEEEEECSC
T ss_pred EEecCCCEEEEEECCCCcccCEEEEEeEEecccccc------------cccccc----------ceeEECCceEEeecCC
Confidence 4321 2334455555555555555554433200000 000000 0001112233445432
Q ss_pred ---------------CeEEecCCCcceeeecCCcEEEEEEecccCC-CeEEEEeC
Q psy5838 162 ---------------PSIIDKDTSTDLVVREQANVTLNCKAQGYPE-PYVMWRRE 200 (215)
Q Consensus 162 ---------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~ 200 (215)
+.+.. .+....+.+|+++.|.|.+.+.|. +.+.|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 187 (256)
T 3juy_B 135 GGGSGGGGSGGGGSEIVLTQ--APGTLSLSPGERATFSCRSSHSIRSRRVAWYQH 187 (256)
T ss_dssp C----------CCCCCCEEE--ECSEEEECTTSCEEEEEEESSCCTTCCEEEEEE
T ss_pred cccccccccCCCcceeEEEe--cCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEE
Confidence 22222 344567889999999999998776 79999983
No 130
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=103.39 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=82.0
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+.. .+.+|++|+|.|.+.++ .+. +.|+|++.. +.... .........
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~-------~~w~k~g~~-~~~~~----------~~~~~~~~~------ 57 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTLE-ARE-------YRLDKEESP-APWDR----------QNPLEPKNK------ 57 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT-CCE-------EEEEETTSC-SCSEE----------ECCCSSSSE------
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCCC-CCE-------EEEEECCCC-Ccccc----------cccccCCce------
Confidence 36777766666 88899999999999873 444 899995432 21000 000000112
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEc---CCeEEecCC
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVV---PPSIIDKDT 169 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~ 169 (215)
..|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...
T Consensus 58 -----------------------------~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~-- 106 (196)
T 3p2t_A 58 -----------------------------ARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSAL-- 106 (196)
T ss_dssp -----------------------------EEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEE--
T ss_pred -----------------------------EEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeC--
Confidence 235667777777777778775532 234556677754 3444432
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
+ ...+.+|++++|.|.+.+. ++.+.|++ +|..+
T Consensus 107 ~-~~~v~~G~~v~L~C~~~~~-~~~~~w~k-~g~~~ 139 (196)
T 3p2t_A 107 P-SPLVTSGKSVTLLCQSRSP-MDTFLLCK-ERAAH 139 (196)
T ss_dssp S-CSEECTTCCEEEEEEEEEE-EEEEEEEE-TTCCC
T ss_pred C-cceecCCCeEEEEEecCCC-CCEEEEEe-CCCcc
Confidence 1 2257899999999999874 46899999 66644
No 131
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.57 E-value=2.6e-14 Score=104.99 Aligned_cols=135 Identities=15% Similarity=0.170 Sum_probs=82.8
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|...|. ..+.+|++|+|.|.+.+ +.+. +.|+|+ +..+... ..+. ......+
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~-------~~W~k~-g~~~~~~-------~~~~---~~~~~~~---- 62 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYL-------TQLMII-KNSTYRE-------IGRR---LKFWNET---- 62 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSE-------EEEEEE-ETTEEEE-------CSEE---CC----C----
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCE-------EEEEEC-CCccccc-------cccc---CCCCcce----
Confidence 34677777666 57889999999999976 3444 999995 4433210 0000 0000111
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEc---CCeEEecC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVV---PPSIIDKD 168 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~ 168 (215)
...|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...
T Consensus 63 -----------------------------~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~- 112 (218)
T 1uct_A 63 -----------------------------DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD- 112 (218)
T ss_dssp -----------------------------CCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEES-
T ss_pred -----------------------------eeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeC-
Confidence 0025566666677777777775431 223445666654 3444432
Q ss_pred CCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+ ...+.+|+++.|.|.+.+.|.+.+.|++ +|..+.
T Consensus 113 -p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k-~g~~~~ 147 (218)
T 1uct_A 113 -R-GLVLMPGENISLTCSSAHIPFDRFSLAK-EGELSL 147 (218)
T ss_dssp -S-CSEECTTCCCEEEEECSSSCCSEEEEEE-TTCSSC
T ss_pred -C-CCccCCCCCEEEEEeCCCCCCCEEEEEE-CCCccc
Confidence 2 3457899999999977677778999999 676553
No 132
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.57 E-value=1.1e-14 Score=105.04 Aligned_cols=130 Identities=20% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...+. ..+.+|++|+|.|.+.+.+. . +.|+|++ ..+... ...+. .....+.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~-------~~W~k~g-~~~~~~------~~~~~----~~~~~~~---- 59 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-E-------YRLYREK-KTAPWI------TRIPQ----ELVKKGQ---- 59 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-C-------EEEEESS-SCCHHH------HTSCH----HHHTTTE----
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-E-------EEEEECC-cccccc------ccccc----cCCcccE----
Confidence 4577766665 47889999999999987654 4 9999954 332100 00000 0001123
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC----CcceeeEEEEEc---CCeEEecC
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVVV---PPSIIDKD 168 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~---~p~~~~~~ 168 (215)
|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...
T Consensus 60 -------------------------------L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~- 107 (198)
T 1ugn_A 60 -------------------------------FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ- 107 (198)
T ss_dssp -------------------------------EEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEE-
T ss_pred -------------------------------EEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccC-
Confidence 5566666677777777775432 334556677776 3444332
Q ss_pred CCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccc
Q psy5838 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~ 205 (215)
....+.+|+++.|.|.+.+. .+.+.|++ +|..+
T Consensus 108 --~~~~v~~G~~v~L~C~~~~~-~~~v~W~k-~g~~~ 140 (198)
T 1ugn_A 108 --PSPVVNSGGNVTLQCDSQVA-FDGFILCK-EGEDE 140 (198)
T ss_dssp --SCSEEETTCCEEEEEECSSC-CSEEEEEE-C----
T ss_pred --CccccCCCCcEEEEEecCCC-CcEEEEEE-CCCcc
Confidence 22467899999999999988 68999999 66654
No 133
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.57 E-value=4.3e-14 Score=100.94 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=78.9
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|...+.. .+.+|++|+|.|.+.+ +.+. +.|+|++.. . .. ..+.
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~-------~~W~k~g~~-~----------------~~---~~~~--- 53 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDL-------YRLEKLSSS-R----------------YQ---DQAV--- 53 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECST-TCSE-------EEEEETTTC-C----------------EE---SSSE---
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCE-------EEEEECCcc-c----------------cC---cccE---
Confidence 346777766664 7899999999999877 4454 999995332 0 00 1123
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEEc---CCeEEecC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVV---PPSIIDKD 168 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~ 168 (215)
|.|.+++.+|+|.|+|.+.+.. ..+..+.+.|.. +|.+....
T Consensus 54 --------------------------------L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p 101 (184)
T 2gi7_A 54 --------------------------------LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP 101 (184)
T ss_dssp --------------------------------EEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC
T ss_pred --------------------------------EEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC
Confidence 4455566666666666664422 223445566643 34444321
Q ss_pred CCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
...+.+|+++.|.|.+.+.| +.+.|++ +|..+.
T Consensus 102 ---~~~v~~G~~v~l~C~~~~~~-~~~~w~k-~g~~~~ 134 (184)
T 2gi7_A 102 ---GPAVSSGGDVTLQCQTRYGF-DQFALYK-EGDPAP 134 (184)
T ss_dssp ---CCSSCCTTCEEEEEECSSCC-CEEEEEE-CCCCTT
T ss_pred ---CceecCCCcEEEEEEcCCCC-cEEEEEE-CCCcCc
Confidence 33467899999999987654 6999999 676554
No 134
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.57 E-value=3.7e-14 Score=106.18 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccC-----CccceeeeEEEEEEecC-CccEE-Eeeece-e--eeCCceEEEEcC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLK-----GFKGLRIGWQVAWVRVD-TQTIL-SIHHNV-I--TQNPRISLTYND 86 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-----~~~~~~~~~~v~W~~~~-~~~~~-~~~~~~-~--~~~~~~~~~~~~ 86 (215)
.+.+...+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +..+. ...... . ....|+.....
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~- 109 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTY-------LNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGS- 109 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCc-------eEEEEeCCCCCceEEEEeccccCCCccceEEEecC-
Confidence 45666667889999999999999998876 255 9999853 32211 110000 0 01133333221
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc---C
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV---P 161 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~ 161 (215)
.....|.|.+++.+|+|.|+|.+.+... ......+.|.. +
T Consensus 110 -----------------------------------~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~ 154 (254)
T 2c1o_A 110 -----------------------------------GTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAA 154 (254)
T ss_dssp -----------------------------------TTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBC
T ss_pred -----------------------------------CCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCC
Confidence 1223466777777777777777754321 11223455543 4
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCccccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLSY 207 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 207 (215)
|.+...... .....|+.+.|.|.+.+. |+ +.+.|++ +|..+..
T Consensus 155 P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~ 199 (254)
T 2c1o_A 155 PTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQN 199 (254)
T ss_dssp CEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEE-SSSEECT
T ss_pred CeeEeecCC--hhhccCCcEEEEEEEecccCCCcEEEEEE-CCCcccC
Confidence 555543222 123368899999999884 44 3699999 7776654
No 135
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.57 E-value=1.9e-14 Score=101.13 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
+.|.+...+..+.+.+|++++|.|.+.+.+ .+. +.|+++ +..+. . ....
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~-------~~W~~~-g~~~~---------~----------~~~~--- 52 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDS-------IQWFHN-GNLIP---------T----------HTQP--- 52 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSC-------EEEEET-TEECT---------T----------CCSS---
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcce-------EEEEEC-CeEcc---------c----------Cccc---
Confidence 356666677778899999999999998865 345 999994 43220 0 0001
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCccee
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLV 174 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~ 174 (215)
+.+.+++.+|+|.|+|.+.+ ...+..+.+.|..++..... ....
T Consensus 53 --------------------------------~~~~~~~~~d~G~Y~C~~~~-~~~s~~~~l~v~~~~~~~~~---~~~~ 96 (170)
T 3ry4_A 53 --------------------------------SYRFKANNNDSGEYTCQTGQ-TSLSDPVHLTVLFEWLVLQT---PHLE 96 (170)
T ss_dssp --------------------------------EEEEECCGGGCEEEEEEETT-SBCCCCEEEEEECCSEEEEC---SCSE
T ss_pred --------------------------------eEEEecccccCeEEEEEEeC-CCceEeEEEEEECCceEecC---CCce
Confidence 23455667777888887763 33445567888777655432 2345
Q ss_pred eecCCcEEEEEEec-ccCCCeEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQ-GYPEPYVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~ 206 (215)
+.+|+.+.|.|.+. +.|.+.+.|++ +|..+.
T Consensus 97 ~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~ 128 (170)
T 3ry4_A 97 FQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQK 128 (170)
T ss_dssp ECTTCCEEEEEEEGGGCCEEEEEEEE-TTEEEE
T ss_pred eecCCeEEEEEECCCCCCCceEEEEE-CCeEcc
Confidence 78899999999995 45668999999 777655
No 136
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.57 E-value=6.1e-14 Score=101.49 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=82.3
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+. ..+.+|++|+|.|...+ +.+. +.|+|++ ..+..... ..+ .......
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~-------~~w~k~g-~~~~~~~~-----~~~---~~~~~~~------ 62 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEH-------FLLHREG-MFNDTLRL-----IGE---HHDGVSK------ 62 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEESS-CCSE-------EEEEEES-SSCEEEEE-----ECE---EETTEEE------
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCE-------EEEEECC-CcCCccee-----eee---cCCCCce------
Confidence 4566666565 67889999999999874 3444 9999954 33211000 000 0000011
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC------CCcceeeEEEEEc---CCeEEe
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD------PMRSRQGYLQVVV---PPSIID 166 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~------~~~~~~~~l~v~~---~p~~~~ 166 (215)
..|.|.+++.+|+|.|+|.+.+. ...+..+.|.|.. +|.+..
T Consensus 63 -----------------------------~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~ 113 (201)
T 1nkr_A 63 -----------------------------ANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSA 113 (201)
T ss_dssp -----------------------------EEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEE
T ss_pred -----------------------------EEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceec
Confidence 23567777777777788877432 1234455677764 345543
Q ss_pred cCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.. ...+.+|++++|.|.+.+ +.+.+.|++ +|..+.
T Consensus 114 ~p---~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~~ 148 (201)
T 1nkr_A 114 QP---GPTVLAGENVTLSCSSRS-SYDMYHLSR-EGEAHE 148 (201)
T ss_dssp ES---CSEECTTCEEEEEEEESS-CCSEEEEEE-TTCSSC
T ss_pred CC---CCccCCCCeEEEEEeCCC-CCceEEEEE-CCcccC
Confidence 22 235789999999999986 567899999 676554
No 137
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.56 E-value=7.8e-14 Score=102.37 Aligned_cols=137 Identities=21% Similarity=0.450 Sum_probs=79.5
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeece----e----eeCCceEEEEcC-Cc
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHNV----I----TQNPRISLTYND-HR 88 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~----~----~~~~~~~~~~~~-~~ 88 (215)
+..+.+.+|++++|.|.+.+.+ .+. +.|+|+. +.. +....... . ...+|+.+..+. ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 79 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYY-------MSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQS 79 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTT
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCc-------EEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCC
Confidence 3467888999999999998754 344 9999864 221 11111000 0 012344443321 12
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC------CcceeeEEEEEc--
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP------MRSRQGYLQVVV-- 160 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~-- 160 (215)
. ..|.|.+++.+|+|.|.|.+.+.. .......+.|..
T Consensus 80 ~-----------------------------------~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~ 124 (222)
T 1q9r_B 80 I-----------------------------------LYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK 124 (222)
T ss_dssp E-----------------------------------EEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC
T ss_pred e-----------------------------------EEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC
Confidence 2 345566666666666666664422 112234555653
Q ss_pred --CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 161 --PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 161 --~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
+|.+...... ..+.+|+.+.|.|.+.|. |.| .+.|++ +|..+
T Consensus 125 ~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~ 170 (222)
T 1q9r_B 125 TTPPSVYPLAPG--SAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLSS 170 (222)
T ss_dssp CBCCEEEEECCC--SCCCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBCT
T ss_pred CCCCeEEEcccc--ccccCCCcEEEEEEEccEECCCCEEEEec-CCeEc
Confidence 3444433211 225679999999999985 888 999999 67654
No 138
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=103.14 Aligned_cols=135 Identities=27% Similarity=0.427 Sum_probs=81.2
Q ss_pred CCccc-CCCCceEEEeCCcEEEEEE-eeccCC-ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 17 MPHFA-EPIPNVTVTVGRDALLACV-VDNLKG-FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 17 ~p~~~-~~~~~~~~~~G~~v~L~C~-~~~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
.|.|. ..+..+.+.+|+++.|.|. ..+.+. +. +.|++++..... ..+.+..... ..+.
T Consensus 7 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~-------v~W~~~~~~~~~-------~~~~~~~~~~---~~~~-- 67 (201)
T 3s97_C 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLS-------YRWLLNEFPVFI-------TMDKRRFVSQ---TNGN-- 67 (201)
T ss_dssp ECCCCSSCCCCEEEETTCCEEECCCCCSEESSCCE-------EEEEESSTTCBC-------CCSSSEEECT---TTCC--
T ss_pred CCccCcCCCceEEEECCCCEEEeccccccCCCceE-------EEEEECCceeee-------eeCCCeEEEc---CCCe--
Confidence 34444 4467899999999999999 777766 66 999995433211 0111111111 1123
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-Ccc---eeeEEEEE-------cCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MRS---RQGYLQVV-------VPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~l~v~-------~~p 162 (215)
|.|.+++.+|+|.|+|.+.+.. ... ....+.+. .+|
T Consensus 68 ---------------------------------L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 114 (201)
T 3s97_C 68 ---------------------------------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPA 114 (201)
T ss_dssp ---------------------------------EEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEE
T ss_pred ---------------------------------EEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCC
Confidence 4455555566666666664321 111 11222222 234
Q ss_pred eEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 163 SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.+... .....+..|+.+.|.|.+.+.|.+.+.|++ ++..+.
T Consensus 115 ~~~~~--~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~ 155 (201)
T 3s97_C 115 DIVVQ--FKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMP 155 (201)
T ss_dssp EEEEE--CCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTBCCC
T ss_pred ceEec--CCceEEecCCcEEEEEEccCCCCCceEEEe-CCCcCC
Confidence 34332 235668899999999999999999999999 666554
No 139
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.56 E-value=4.4e-15 Score=127.41 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=46.2
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEE-EcCCceEEEEEccceec
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLT-YNDHRSWFLNIKNVQES 100 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~ 100 (215)
+..+.+.+|++++|.|.+.+.+ ... +.|++++.. +...... ......... ........|.|.+++.+
T Consensus 231 ~~~~~v~~G~~v~L~C~~~~~~~~~~~-------~~W~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~ 300 (772)
T 3v2a_R 231 SHGIELSVGEKLVLNCTARTELNVGID-------FNWEYPSSK-HQHKKLV--NRDLKTQSGSEMKKFLSTLTIDGVTRS 300 (772)
T ss_dssp CSCEEEETTCCEEEEEEEEECTTCCCE-------EEEECC---------CE--EEEC-----CCCEEEEEEEEESSCCST
T ss_pred CCceEEecCCcEEEEEEEecCCCCcee-------EEEecCCcc-CCCceee--eccccccccccceEEEEEEEECcCCcC
Confidence 4457899999999999998743 334 899995433 2110000 000000000 01113458999999999
Q ss_pred CCEEEEEEccC---------------------------------------------CCceEEEEccC-----------Ce
Q psy5838 101 DRGWYMCQVNT---------------------------------------------NPRISLTYNDH-----------RS 124 (215)
Q Consensus 101 d~G~Y~C~~~~---------------------------------------------~~~~~~~~~~~-----------~~ 124 (215)
|+|.|+|.+.+ .|.+.+.|... ..
T Consensus 301 d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~ 380 (772)
T 3v2a_R 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAG 380 (772)
T ss_dssp TCSEEEEEEECSSCEEEEEEEEEEECCCC---------------------------------------------------
T ss_pred CCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccc
Confidence 99999998763 23334444221 12
Q ss_pred EEEEEcccCCCCCeEEEEEeecC-CC--cceeeEEEEEcCCeEEecC-CCcceeeecCCcEEEEEEecccCCCe-EEEEe
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD-PM--RSRQGYLQVVVPPSIIDKD-TSTDLVVREQANVTLNCKAQGYPEPY-VMWRR 199 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~-~~--~~~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~ 199 (215)
..|.|.+++.+|+|.|+|.+.+. +. .+..+.+.|..+|.+.... ......+.+|+.+.|.|.+.+.|.|. +.|++
T Consensus 381 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~ 460 (772)
T 3v2a_R 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW 460 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEE
Confidence 66889999999999999999763 22 2445567777788765321 11222378899999999999999996 99999
Q ss_pred C
Q psy5838 200 E 200 (215)
Q Consensus 200 ~ 200 (215)
+
T Consensus 461 ~ 461 (772)
T 3v2a_R 461 Q 461 (772)
T ss_dssp -
T ss_pred c
Confidence 3
No 140
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.56 E-value=1.2e-13 Score=101.55 Aligned_cols=138 Identities=17% Similarity=0.384 Sum_probs=78.3
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeeec----e--eeeCCceEEEEcC-CceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHHN----V--ITQNPRISLTYND-HRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~~----~--~~~~~~~~~~~~~-~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +... +..... . ....+|+.+..+. ...++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYG-------MHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLY 80 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEE
T ss_pred CCEEEcCCCcEEEEEEecCcccCCce-------EEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEE
Confidence 468899999999999998654 233 9999964 2221 111100 0 0012344443321 12333
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-------CcceeeEEEEEc----
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-------MRSRQGYLQVVV---- 160 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v~~---- 160 (215)
|.|.+++.+|+|.|.|.+.+.. .....+.|.|..
T Consensus 81 -----------------------------------L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~ 125 (223)
T 1dee_B 81 -----------------------------------LQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSAS 125 (223)
T ss_dssp -----------------------------------EEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCB
T ss_pred -----------------------------------EEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCC
Confidence 5555555566666666654321 011223566652
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
+|.+..... ...+.+|+.+.|.|.+.+. |.+ .+.|++.+|..+.
T Consensus 126 ~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~ 171 (223)
T 1dee_B 126 APTLFPLVS--CENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDIS 171 (223)
T ss_dssp CCEEEEEEC--TTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCS
T ss_pred CCEEEEecC--CcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccc
Confidence 344443211 1124689999999999886 777 8999996666553
No 141
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.55 E-value=1.6e-13 Score=99.77 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=82.9
Q ss_pred ceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 26 NVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
.+.+..|++++|.|.+ +.+.+ . +.|++.++.. .+.... .
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~-------i~W~~~~~~l------------~~~~~~---~---------------- 56 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGAS-------VQWRGLDTSL------------GAVQSD---T---------------- 56 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCE-------EEEESSTTTT------------CCEEEE---S----------------
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcc-------eEEeeccccc------------CcEEec---C----------------
Confidence 3789999999999999 66666 6 9999954321 111110 0
Q ss_pred EEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEE
Q psy5838 104 WYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT 182 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~ 182 (215)
....|.|.+++.+|+|.|.|.+.+. +...+.+.|.|..+|....... . ...+|+..
T Consensus 57 -------------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~-~--~~~~g~~~- 113 (210)
T 1gsm_A 57 -------------------GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP-A--ALVPGDPE- 113 (210)
T ss_dssp -------------------SEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEES-S--SBCTTCCE-
T ss_pred -------------------CccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEcc-c--eEEeCCce-
Confidence 1124677888888888888888654 3345567899999998765422 1 45678888
Q ss_pred EEEEeccc-CCC----eEEEEeCCCcccc
Q psy5838 183 LNCKAQGY-PEP----YVMWRREDGANLS 206 (215)
Q Consensus 183 l~C~~~~~-p~~----~i~W~~~~~~~~~ 206 (215)
|.|.+.+. |.+ .+.|++ |++.|.
T Consensus 114 l~C~a~g~~P~~~~~lti~Wlk-~~~~L~ 141 (210)
T 1gsm_A 114 VACTAHKVTPVDPNALSFSLLV-GGQELE 141 (210)
T ss_dssp EEEEEEEEBCCCTTTEEEEEEE-TTEECT
T ss_pred EEEEeCCCCCCCCCCcEEEEEE-CCEEcc
Confidence 99999884 754 799999 888775
No 142
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.55 E-value=4.8e-14 Score=105.57 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccC-----CccceeeeEEEEEEecC-CccE--EEeeecee--eeCCceEEEEcC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLK-----GFKGLRIGWQVAWVRVD-TQTI--LSIHHNVI--TQNPRISLTYND 86 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-----~~~~~~~~~~v~W~~~~-~~~~--~~~~~~~~--~~~~~~~~~~~~ 86 (215)
.+.+...+..+.+.+|++|+|.|.+.+.+ .+. +.|+|++ +..+ +....... ....|+.....
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 105 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTY-------LEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS- 105 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCc-------EEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc-
Confidence 45566667889999999999999998776 355 9999964 2211 11100000 01233333221
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc---C
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV---P 161 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~ 161 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|.. +
T Consensus 106 -----------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~ 150 (252)
T 3bkj_L 106 -----------------------------------GTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAA 150 (252)
T ss_dssp -----------------------------------TTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBC
T ss_pred -----------------------------------CCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcC
Confidence 1223466666666667777777644221 11223455543 4
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCcccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLS 206 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~ 206 (215)
|.+....... .+.+|+.+.|.|.+.+ .|.+ .+.|++ +|..+.
T Consensus 151 P~v~~~~~~~--~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~ 194 (252)
T 3bkj_L 151 PTVSIFPPSS--EQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQ 194 (252)
T ss_dssp CEEEEECCCH--HHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEEEC
T ss_pred cEEEEeCCCh--hhcCCCcEEEEEEEeeEeCCCcEEEEEE-CCeecC
Confidence 5555432221 2347899999999988 4554 799999 777654
No 143
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.55 E-value=1.4e-13 Score=97.95 Aligned_cols=111 Identities=15% Similarity=0.306 Sum_probs=79.5
Q ss_pred ceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 26 NVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
...+.+|++++|.|.+.+.+.+ . +.|++ ++..+.. .... .
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~-------~~W~k-~~~~l~~--------~~~~--------~-------------- 48 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTG-------HRWLK-GGVVLKE--------DALP--------G-------------- 48 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCE-------EEEES-SSEEEEC--------TTCC--------C--------------
T ss_pred EEEEecCCCEEEEEECCCCCCCceE-------EEEEe-CCEEeec--------cccc--------C--------------
Confidence 3567899999999999876655 4 99999 4443311 1000 0
Q ss_pred EEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEE
Q psy5838 104 WYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183 (215)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l 183 (215)
....|.+. +.+|+|.|+|.+.+ .....+.+.|..+|.+... +....+.+|+.+.|
T Consensus 49 -------------------~~~~l~i~--~~~d~G~Y~C~~~n--~~~~~~~l~V~~~P~~~~~--~~~~~~~~g~~~~l 103 (184)
T 3b5h_A 49 -------------------QKTEFKVD--SDDQWGEYSCVFLP--EPMGTANIQLHGPPRVKAV--KSSEHINEGETAML 103 (184)
T ss_dssp -------------------SEEEEEEC--GGGCCEEEEEEEES--TTSCEEEEEECCSCCCEES--CSEEEECTTSCEEE
T ss_pred -------------------CcEEEEEe--chhhCeEEEEEEEC--CcCcEEEEEEecCCceeec--CCCcEEcCCCcEEE
Confidence 00123344 47789999999975 3446678888888887754 24456889999999
Q ss_pred EEEecccC-CCeEEEEe
Q psy5838 184 NCKAQGYP-EPYVMWRR 199 (215)
Q Consensus 184 ~C~~~~~p-~~~i~W~~ 199 (215)
.|.+.+.| .+.+.|++
T Consensus 104 ~C~~~g~p~~~~i~W~~ 120 (184)
T 3b5h_A 104 VCKSESVPPVTDWAWYK 120 (184)
T ss_dssp EEECCCSSCCCEEEEEE
T ss_pred EEEECCCCCCCeEEEEE
Confidence 99999999 78999999
No 144
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.55 E-value=1.6e-13 Score=100.18 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=79.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEee-ccC-CccceeeeEEEEEEecCC-ccE-EEeee-ce--eeeCCceEEEEcCCceEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVD-NLK-GFKGLRIGWQVAWVRVDT-QTI-LSIHH-NV--ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~-~~~-~~~~~~~~~~v~W~~~~~-~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~~l 92 (215)
+.. |..+.+.+|++|+|.|.+. +.+ .+. +.|+|++. ..+ ..... .. .....|+.....
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------- 68 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNY-------VSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS------- 68 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSC-------CEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-------
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCe-------EEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc-------
Confidence 444 5678899999999999954 332 344 89999542 221 11100 00 001223333221
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC---cceeeEEEEE---cCCeEEe
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM---RSRQGYLQVV---VPPSIID 166 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~---~~p~~~~ 166 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|. .+|.+..
T Consensus 69 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~ 119 (216)
T 2xzc_L 69 -----------------------------GTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFI 119 (216)
T ss_dssp -----------------------------TTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEE
T ss_pred -----------------------------CCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEE
Confidence 1223466666677777777777754322 1223345554 3455554
Q ss_pred cCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
..... ....|+.+.|.|.+.+ .|.+ .+.|++ +|..+..
T Consensus 120 ~~~~~--~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~~~~ 159 (216)
T 2xzc_L 120 FPPSD--EQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQSG 159 (216)
T ss_dssp ECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEECCS
T ss_pred eCCCh--hhccCCcEEEEEEEEeEcCCceEEEEEE-CCeecCC
Confidence 32211 1236889999999988 5654 899999 7776543
No 145
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.55 E-value=9.7e-14 Score=102.67 Aligned_cols=145 Identities=18% Similarity=0.296 Sum_probs=83.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecCC-cc---EEEeeece--e--e-eCCceEEEEcCCc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVDT-QT---ILSIHHNV--I--T-QNPRISLTYNDHR 88 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~~--~--~-~~~~~~~~~~~~~ 88 (215)
+...+..+.+.+|++|+|.|.+.+. +.+. +.|+|+.. .. ++...... . . ...|+.+..+..
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~- 75 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVT-------IHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPS- 75 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCC-------EEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCT-
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccE-------EEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCC-
Confidence 4556778999999999999999864 3334 99998642 21 22111100 0 0 233443332210
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC---C--CcceeeEEEEEc---
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD---P--MRSRQGYLQVVV--- 160 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~--~~~~~~~l~v~~--- 160 (215)
.....|.|.+++.+|+|.|.|.+.+. . .......|.|..
T Consensus 76 ---------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~ 122 (230)
T 1ypz_F 76 ---------------------------------ASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDK 122 (230)
T ss_dssp ---------------------------------TTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCT
T ss_pred ---------------------------------CCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccc
Confidence 12234666666777777777776542 1 111234566651
Q ss_pred ------CCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCcccc
Q psy5838 161 ------PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLS 206 (215)
Q Consensus 161 ------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~ 206 (215)
+|...+.. +....+..|+.+.|.|.+.++ |. +.+.|++.||+.+.
T Consensus 123 ~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~ 175 (230)
T 1ypz_F 123 RLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTIL 175 (230)
T ss_dssp TCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBC
T ss_pred cCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEcc
Confidence 23332221 222234578999999999885 75 58999996666553
No 146
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.55 E-value=2.2e-13 Score=102.01 Aligned_cols=137 Identities=16% Similarity=0.309 Sum_probs=77.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEEEee---------eceeeeCCceEEEEcC-
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTILSIH---------HNVITQNPRISLTYND- 86 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~- 86 (215)
++..+..+.+.+|++|+|.|.+.+.+ .+. +.|+|.. +..+.... .......+|+.+..+.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 76 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTY-------MSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTS 76 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSC-------EEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCce-------EEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecC
Confidence 44556788999999999999998743 344 9999943 22221110 0000112444444321
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEEc----
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVVV---- 160 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---- 160 (215)
...++|.|.+ ++.+|+|.|+|.+.+.... .....+.|..
T Consensus 77 ~~~~~L~I~~-----------------------------------v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~ 121 (253)
T 3uzq_A 77 SNTAYLHLSS-----------------------------------LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGG 121 (253)
T ss_dssp TTEEEEEECS-----------------------------------CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCC
T ss_pred CCeEEEEeCC-----------------------------------CCcccCEEEEEEEeeCCccEECCCcEEEEecCCcc
Confidence 2234455444 5555555555554331111 1223344432
Q ss_pred -----------CCeEEecCCCcceeeecCCcEEEEEEecccCCC----eEEEEeC
Q psy5838 161 -----------PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP----YVMWRRE 200 (215)
Q Consensus 161 -----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~i~W~~~ 200 (215)
++.+.. .+....+.+|+++.|.|.+.+.|.+ .+.|++.
T Consensus 122 ~~~~~~~~~~~~~~v~~--~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~ 174 (253)
T 3uzq_A 122 SGGGGSGGGGSELVMTQ--TPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQ 174 (253)
T ss_dssp CCC---------CCEEE--ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred ccccccCCCcccceEEC--cCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEE
Confidence 233332 3445668899999999999998776 8999983
No 147
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.55 E-value=3.8e-14 Score=103.18 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=82.8
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEEe-e-ecee--eeCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILSI-H-HNVI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+.. |..+.+.+|++++|.|.+.+.+.+. +.|+|+. +..+... . .... ....|+.+...
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--------- 65 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNF-------AYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS--------- 65 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSC-------CEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE---------
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCe-------EEEEEECCCCCcEEEEEeccccCCCccccEEEEee---------
Confidence 344 6788999999999999988766555 8999853 2322111 0 0000 01233333221
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec--CCC--cceeeEEEEE----cCCeEEe
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT--DPM--RSRQGYLQVV----VPPSIID 166 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~--~~~--~~~~~~l~v~----~~p~~~~ 166 (215)
.....|.|.+++.+|+|.|+|.+.+ ... ......+.|. .+|.+..
T Consensus 66 ---------------------------~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~ 118 (212)
T 1nfd_E 66 ---------------------------GTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTV 118 (212)
T ss_dssp ---------------------------TTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEEC
T ss_pred ---------------------------CCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEe
Confidence 1223466677777777777777753 111 1222345553 3455543
Q ss_pred cCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCccccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLSY 207 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 207 (215)
.. ....+.+|+.+.|.|.+.+. |+ +.+.|++ +|..+..
T Consensus 119 ~~--~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~~ 158 (212)
T 1nfd_E 119 FP--PSPEELRTNKATLVCLVNDFYPGSATVTWKA-NGATIND 158 (212)
T ss_dssp CC--CCHHHHHTTEECCCEEEEEEBSSCCEEEEEE-TTEEECS
T ss_pred eC--CchHhccCCceEEEEEEEeeECCccEEEEEE-CCeEcCC
Confidence 22 12224579999999999986 55 6999999 7776653
No 148
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.55 E-value=3.1e-13 Score=101.39 Aligned_cols=137 Identities=13% Similarity=0.241 Sum_probs=77.4
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEEEe---e------eceeeeCCceEEEEcC-CceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTILSI---H------HNVITQNPRISLTYND-HRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~~~---~------~~~~~~~~~~~~~~~~-~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|.. +..+..+ . ........|+.+..+. ...+.
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 82 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFTEYT-------MHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAY 82 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred CceEEcCCCCEEEEEEEecccccccE-------EEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEE
Confidence 457789999999999998754 344 9999853 2222111 0 0001123455554432 23445
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEc-----------
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV----------- 160 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----------- 160 (215)
|.|.+++.+|+|.|+|.+.+.... . .........|.|..
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~--------------------~----------~~~~~~~~~L~V~~~~~~~~~~~~~ 132 (256)
T 3umt_A 83 LELRSLTSEDSAVYYCARDDRYPA--------------------W----------FAYWGQGTTVTVSSGGGGSGGGGSG 132 (256)
T ss_dssp EEECSCCGGGCEEEEEEECCSTTC--------------------C----------SCEECCCEEEEECC-----------
T ss_pred EEECCCCcccCEEEEEEEccCCCc--------------------c----------ccEECCCEEEEEcCCCccccCcccC
Confidence 666665555555555555432100 0 00011122333332
Q ss_pred -----CCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 161 -----PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 161 -----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
++.+.. .+....+.+|++++|.|.+.+.|.+.+.|++.
T Consensus 133 ~~~~~~~~~~~--~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~ 175 (256)
T 3umt_A 133 GGGSTDIQLTQ--SPSSLSASLGERVSITCRASQDIGSNLNWLQQ 175 (256)
T ss_dssp ----CCCCEEE--ECSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred CCCccccEEEc--CCCeEEEECCCCEEEEEEEecCCCcEEEEEEE
Confidence 333333 23456688999999999999988889999983
No 149
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.55 E-value=4.2e-14 Score=99.98 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=75.9
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceee----eCCceEEEEcCCceEEEEEccceecC
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT----QNPRISLTYNDHRSWFLNIKNVQESD 101 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d 101 (215)
.+.+.+|++|+|.|.+.+ +.+. +.|++++. .+......... ..+|+.+.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~-------i~W~~~~~-~i~~~~~~~~~~~~~~~~R~~~~------------------ 56 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKE-------VLWKKQKD-KVAELENSEFRAFSSFKNRVYLD------------------ 56 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSC-------EEEEETTE-EEEEEETTEEEECGGGTTSEEEC------------------
T ss_pred EEEEEcCCCEEEcCCCCC-Ccce-------EEEEeCCc-EEEEEcCCCcccccccCCcEEEe------------------
Confidence 577889999999999854 5555 99999543 33222111110 01122111
Q ss_pred CEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcE
Q psy5838 102 RGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~ 181 (215)
..+.+|.|.+++.+|+|.|.|.+.+... ...+.|.|..++..+.. ... +...
T Consensus 57 --------------------~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~~~~~p~i------~~~-~~~~ 108 (171)
T 1ccz_A 57 --------------------TVSGSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLEMVSKPMI------YWE-CSNA 108 (171)
T ss_dssp --------------------TTTCCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEECCCCCCEE------EEE-TTTT
T ss_pred --------------------CCCCeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEECcCCCCEE------EEe-cCCc
Confidence 0112466777777888888888754332 56667777765322111 111 1113
Q ss_pred EEEEEecccCCCeEEEEeCCCcccc
Q psy5838 182 TLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 182 ~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
.|.|.+.+.|.|.+.|++ +|..+.
T Consensus 109 ~L~C~~~~~p~p~i~W~~-~~~~l~ 132 (171)
T 1ccz_A 109 TLTCEVLEGTDVELKLYQ-GKEHLR 132 (171)
T ss_dssp EEEEECSSCSSCEEEEEE-TTEEEE
T ss_pred EEEEEeCCCCCcEEEEEE-CCEECc
Confidence 799999998999999999 777664
No 150
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.55 E-value=1.4e-13 Score=102.00 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=83.2
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccC----CccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEEEcCCce
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLK----GFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLTYNDHRS 89 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~----~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (215)
.+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. .+....... ....|+.+...
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-------i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---- 71 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGF-------LHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS---- 71 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEEC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCce-------EEEEEECCCCCceEEEEEecccCcCCCccEEEEec----
Confidence 455567788999999999999999876 455 9999963 121 111100000 01233333221
Q ss_pred EEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEcCC-----
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVVPP----- 162 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p----- 162 (215)
.....|.|.+++.+|+|.|+|.+.+... ......+.|..++
T Consensus 72 --------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~ 119 (240)
T 1moe_A 72 --------------------------------RTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGG 119 (240)
T ss_dssp --------------------------------TTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCC
T ss_pred --------------------------------CCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCc
Confidence 1223466667777777777777754321 2334456665532
Q ss_pred eEEecCCCcceeeecCCcEEEEEEecccCC--CeEEEEeC
Q psy5838 163 SIIDKDTSTDLVVREQANVTLNCKAQGYPE--PYVMWRRE 200 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~ 200 (215)
.+... .+....+.+|+++.|.|.+.+.|. +.+.|++.
T Consensus 120 ~~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~ 158 (240)
T 1moe_A 120 EVQLQ-QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ 158 (240)
T ss_dssp CCEEE-ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred eEEEe-CCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence 12211 233456889999999999998874 58999994
No 151
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.55 E-value=8e-14 Score=101.44 Aligned_cols=137 Identities=22% Similarity=0.371 Sum_probs=78.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCC--ccceeeeEEEEEEecC-CccE---EEeeec-ee----eeCCceEEEEcCCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRVD-TQTI---LSIHHN-VI----TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~-~~~~---~~~~~~-~~----~~~~~~~~~~~~~~~~~l 92 (215)
+..+.+.+|++++|.|.+.+.+. +. +.|+|+. +... ...... .. ....|+.+..+..
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----- 74 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDY-------WSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS----- 74 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSC-------EEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG-----
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCc-------EEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC-----
Confidence 45678899999999999987542 44 9999853 2221 111000 00 0123444332210
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEc----CCeEEecC
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV----PPSIIDKD 168 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----~p~~~~~~ 168 (215)
.....|.|.+++.+|+|.|.|.+.+.........+.|.. +|.+....
T Consensus 75 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~ 125 (210)
T 3d9a_H 75 -----------------------------KNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLA 125 (210)
T ss_dssp -----------------------------GTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEEC
T ss_pred -----------------------------CCEEEEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEec
Confidence 112345666666666667777665432222234455542 34444322
Q ss_pred CCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy5838 169 TSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGAN 204 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 204 (215)
. ...+.+|+.+.|.|.+.+. |.| .+.|++ ++..
T Consensus 126 ~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~ 160 (210)
T 3d9a_H 126 P--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSLS 160 (210)
T ss_dssp C--TTSCCCSSEEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred C--CcccccCCcEEEEEEEeeEecCCcEEEEee-CCcc
Confidence 1 2235689999999999886 888 999999 6654
No 152
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.55 E-value=2.7e-13 Score=101.84 Aligned_cols=133 Identities=14% Similarity=0.243 Sum_probs=79.7
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE--EEeee-------ceeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI--LSIHH-------NVITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~--~~~~~-------~~~~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.+ .+. +.|+|++ +..+ +.... .......|+.+..+ ....+
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYW-------MHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTA 79 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSC-------EEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEE
T ss_pred CCCeeecCCCcEEEEEEeccccCCCce-------EEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEE
Confidence 4578899999999999998754 344 9999953 2221 11000 00011244444332 11233
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC------cceeeEEEEEcCCeE
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM------RSRQGYLQVVVPPSI 164 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~p~~ 164 (215)
.|.|.+++.+|+|.|.|.+.+... ......|.|..++.+
T Consensus 80 -----------------------------------~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v 124 (256)
T 1nqb_A 80 -----------------------------------YMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIEL 124 (256)
T ss_dssp -----------------------------------EEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCE
T ss_pred -----------------------------------EEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccE
Confidence 355666666666666666644311 112345666655555
Q ss_pred EecCCCcceeeecCCcEEEEEEecccCCC-----eEEEEeC
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGYPEP-----YVMWRRE 200 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~i~W~~~ 200 (215)
.. .+....+.+|+++.|.|.+.+.|.+ .+.|++.
T Consensus 125 ~~--~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 125 TQ--TPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp EE--ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred Ee--cCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 43 2345568899999999999998765 8999994
No 153
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.55 E-value=1.7e-13 Score=101.45 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=79.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEE---Eeeec----eeeeCCceEEEEcCCceEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTIL---SIHHN----VITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~ 91 (215)
+...|..+.+.+|++|+|.|. .+.+.+. +.|+|+. +..+. ..... ......|+.+.......+.
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~-------i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 74 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNN-------MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFS 74 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSE-------EEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCE
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCcc-------EEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEE
Confidence 455677899999999999999 5655565 9999952 22111 10000 0001233433322222333
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC------cceeeEEEEEcCC---
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM------RSRQGYLQVVVPP--- 162 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~p--- 162 (215)
|.|.+++.+|+|.|.|.+.+... ......+.|...+
T Consensus 75 -----------------------------------L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~ 119 (238)
T 2p1y_A 75 -----------------------------------LILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDA 119 (238)
T ss_dssp -----------------------------------EEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHH
T ss_pred -----------------------------------EEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCC
Confidence 55555555566666666543210 1122345565433
Q ss_pred ---------eEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 163 ---------SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 163 ---------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
.+.. .+....+.+|+++.|.|.+.+.|.+.+.|++.
T Consensus 120 ~p~~~~~~~~v~~--~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~ 164 (238)
T 2p1y_A 120 KKDAAKKDGQVRQ--SPQSLTVWEGETAILNCSYENSAFDYFPWYQQ 164 (238)
T ss_dssp HHHHHHHHTCCEE--ECSEEEEETTSCEEEEEECCCTTCCEEEEEEE
T ss_pred cCCcccceeeEEc--cCceEEEeCCCeEEEEEEEecCCCCcEEEEEE
Confidence 2222 24455688999999999999998899999994
No 154
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.54 E-value=1.5e-13 Score=102.40 Aligned_cols=138 Identities=19% Similarity=0.258 Sum_probs=76.3
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeecee--eeCCceEEEEcCCceEEEE
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHNVI--TQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 93 (215)
.+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|+.. .. .+....... ....|+..... ...+.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~ 74 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNN-------LHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-GTDFTLS 74 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEE
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCce-------EEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC-CCEEEEE
Confidence 455667788999999999999999877666 99999542 11 111100000 01234444322 1334455
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEcCCe--------
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVVPPS-------- 163 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~-------- 163 (215)
|.+ ++.+|+|.|.|.+.+... ......|.|..+|.
T Consensus 75 I~~-----------------------------------v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~ 119 (242)
T 2znx_A 75 INS-----------------------------------VETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGG 119 (242)
T ss_dssp ESS-----------------------------------CCGGGCEEEEEEECSSSSCEECCCEEEEEC------------
T ss_pred ECC-----------------------------------CChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccc
Confidence 544 555555555555433211 11223344444331
Q ss_pred ----EEecCCCcceeeecCCcEEEEEEecccC--CCeEEEEeC
Q psy5838 164 ----IIDKDTSTDLVVREQANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 164 ----~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
+... .+....+.+|+++.|.|.+.+.| .+.+.|++.
T Consensus 120 ~~~~~~~~-~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~ 161 (242)
T 2znx_A 120 GGSDIQLQ-ESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK 161 (242)
T ss_dssp ---CCEEE-EECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred cccceeee-cCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence 1111 12233588999999999999876 468999994
No 155
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.54 E-value=2.4e-13 Score=100.11 Aligned_cols=136 Identities=21% Similarity=0.389 Sum_probs=78.6
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE--E-Eeee--c--ee--eeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI--L-SIHH--N--VI--TQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~--~-~~~~--~--~~--~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +..+ + .... . .. ....|+.+..+. ...
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~- 78 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHT-------MNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDF- 78 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTE-
T ss_pred CCCeEecCCCCEEEEEEecCcccCCce-------EEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCE-
Confidence 3467899999999999998654 344 9999864 2221 1 1110 0 00 012344443321 122
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC------C---cceeeEEEEEc-
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP------M---RSRQGYLQVVV- 160 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~------~---~~~~~~l~v~~- 160 (215)
..|.|.+++.+|+|.|.|.+.+.. . ......|.|..
T Consensus 79 ----------------------------------~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~ 124 (225)
T 1op3_H 79 ----------------------------------VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA 124 (225)
T ss_dssp ----------------------------------EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC
T ss_pred ----------------------------------EEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccC
Confidence 345566666666666666665432 1 11234566664
Q ss_pred ---CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy5838 161 ---PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGAN 204 (215)
Q Consensus 161 ---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 204 (215)
+|.+....... .+.+|+.+.|.|.+.+. |.+ .+.|++ ++..
T Consensus 125 ~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~~ 170 (225)
T 1op3_H 125 STKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSWNS-GALT 170 (225)
T ss_dssp SCBCCEEEEECCCT--TCCCCCEEEEEEEEEEEBSSCCEEECCT-TSCC
T ss_pred CCcCCeEEEecccc--cccCCCcEEEEEEEEeEECCCeEEEEec-CCCc
Confidence 34444322111 24679999999999885 776 899999 6654
No 156
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.54 E-value=5.8e-14 Score=106.61 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=80.4
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeecee--eeCCceEEEEcCCceE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHNVI--TQNPRISLTYNDHRSW 90 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (215)
..+.+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|+.. .. .+....... ....|+..... ...+
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~-------i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~ 82 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTA-------VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTDF 82 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCc-------EEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc-CCeE
Confidence 356677778889999999999999999877666 99999642 11 111100000 01234443321 1233
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEcCC------
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVVPP------ 162 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p------ 162 (215)
. |.|.+++.+|+|.|.|.+.+... ......+.|..+|
T Consensus 83 ~-----------------------------------L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~ 127 (276)
T 3auv_A 83 T-----------------------------------LTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG 127 (276)
T ss_dssp E-----------------------------------EEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC----------
T ss_pred E-----------------------------------EEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccc
Confidence 4 45555555555555555543211 1122334444332
Q ss_pred -------eEEecCCCcceeeecCCcEEEEEEecccC--CCeEEEEeC
Q psy5838 163 -------SIIDKDTSTDLVVREQANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 163 -------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
.+... .+....+.+|+++.|.|.+.+.| .+.+.|++.
T Consensus 128 ~~~~~~p~~~~~-~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~ 173 (276)
T 3auv_A 128 RSGGGGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ 173 (276)
T ss_dssp -------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred cccccCcceEEE-CCCceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence 12111 12355688999999999999876 478999994
No 157
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.54 E-value=1.1e-13 Score=101.50 Aligned_cols=135 Identities=24% Similarity=0.439 Sum_probs=78.0
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeee--ce----e--eeCCceEEEEcC-Cc
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHH--NV----I--TQNPRISLTYND-HR 88 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~--~~----~--~~~~~~~~~~~~-~~ 88 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. ++.... .. . ....|+.+..+. ..
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 79 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYW-------MEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKS 79 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSE-------EEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGT
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCcc-------EEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCC
Confidence 4567899999999999998754 333 9999964 222 111110 00 0 012344443321 12
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----cceeeEEEEE----c
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----RSRQGYLQVV----V 160 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~ 160 (215)
.+ .|.|.+++.+|+|.|.|.+.+... ......+.|. .
T Consensus 80 ~~-----------------------------------~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~ 124 (220)
T 1pz5_B 80 SV-----------------------------------YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTT 124 (220)
T ss_dssp EE-----------------------------------EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCB
T ss_pred eE-----------------------------------EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCC
Confidence 23 355666666666666666654321 1123455555 2
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGA 203 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~ 203 (215)
+|.+..... ...+.+|+.+.|.|.+.+. |.| .+.|++ ++.
T Consensus 125 ~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~ 166 (220)
T 1pz5_B 125 APSVYPLVP--GCSDTSGSSVTLGCLVKGYFPEPVTVKWNY-GAL 166 (220)
T ss_dssp CCEEEEECC--CSCCSCSSSEEEEEEEEEEBSSCCEEEEGG-GTC
T ss_pred CCeEEEccc--ccccCCCCcEEEEEEEEEEeCCCeEEEEec-CCc
Confidence 444443221 1235689999999999986 888 999999 444
No 158
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.54 E-value=6.4e-14 Score=102.03 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCceEEEeCCcEEEEEEeecc-------CCccceeeeEEEEEEecCCcc----EEEeeec----eeeeCCceEEEEcC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNL-------KGFKGLRIGWQVAWVRVDTQT----ILSIHHN----VITQNPRISLTYND 86 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~-------~~~~~~~~~~~v~W~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~ 86 (215)
..+..+.+.+|++|+|.|.+.++ +.+. +.|+|+.... ++..... ......|+.+..+.
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 77 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLY-------VYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV 77 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEE-------EEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceE-------EEEEecCCCCcccceEecCCcccccCccccCceEEeccC
Confidence 34678899999999999999854 2333 9999964321 1110000 00112333332210
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-C----cceeeEEEEEcC
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-M----RSRQGYLQVVVP 161 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~----~~~~~~l~v~~~ 161 (215)
...+..|.|.+++.+|+|.|.|.+.+.. . ....+.|.|..+
T Consensus 78 ----------------------------------~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~ 123 (214)
T 2zg1_A 78 ----------------------------------QKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL 123 (214)
T ss_dssp ----------------------------------GGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC
T ss_pred ----------------------------------CCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC
Confidence 0012236677777777777777775432 1 124566777764
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEeccc----CCCeEEEEeCCCcc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGY----PEPYVMWRREDGAN 204 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~~~~~ 204 (215)
+.......+. .+.+|+.+.|.|.+.+. |.|.+.|++ ++..
T Consensus 124 ~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~-~~~~ 167 (214)
T 2zg1_A 124 IEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTG-NALS 167 (214)
T ss_dssp CCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEES-STTS
T ss_pred CCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEeC-CCCc
Confidence 3221111111 25789999999999774 788999999 5543
No 159
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.54 E-value=1.9e-13 Score=100.92 Aligned_cols=137 Identities=19% Similarity=0.347 Sum_probs=74.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeee--cee----eeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHH--NVI----TQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~--~~~----~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +..+ ..... ... ....|+.+..+. ...+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYW-------INWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTA 79 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEE
T ss_pred CCCeEEcCCCCEEEEEEecCCccccce-------EEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeE
Confidence 4577899999999999998754 344 9999964 2221 11110 000 012444443321 1233
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc----CCeE
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV----PPSI 164 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~p~~ 164 (215)
.|.|.+++.+|+|.|.|.+.+... ......|.|.. +|.+
T Consensus 80 -----------------------------------sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v 124 (227)
T 1mju_H 80 -----------------------------------YMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSV 124 (227)
T ss_dssp -----------------------------------EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEE
T ss_pred -----------------------------------EEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEE
Confidence 355566666666666666643211 11223555653 3444
Q ss_pred EecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
..... ...+.+|+.+.|.|.+.+. |.+ .+.|++ ++..+
T Consensus 125 ~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~ 164 (227)
T 1mju_H 125 YPLAP--VCGDTSGSSVTLGCLVKGYFPEPVTLTWNS-GSLSS 164 (227)
T ss_dssp EEECC--CC------CEEEEEEEEEEBSSCCEEEEGG-GTBCT
T ss_pred EEecC--CccccCCCcEEEEEEeecEeCCCeEEEEec-CCCcC
Confidence 43211 1235689999999999985 777 899999 66543
No 160
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.53 E-value=1.7e-13 Score=102.12 Aligned_cols=135 Identities=15% Similarity=0.350 Sum_probs=75.5
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-ccE--E-Eeee------ceeeeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QTI--L-SIHH------NVITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~~--~-~~~~------~~~~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|+.. ..+ + .... .......|+.+..+ ....++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 82 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYA-------MHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY 82 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE
T ss_pred CCEEEecCCcEEEEEEeccccCCCce-------EEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE
Confidence 458899999999999998765 344 99998532 211 1 1100 00011245554433 123445
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcC----------
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP---------- 161 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~---------- 161 (215)
|.|.+++.+|+|.|+|.+.+... . ........|.|..+
T Consensus 83 L~I~~v~~~D~G~Y~C~~~n~~~-~-------------------------------~~~~~~~~l~V~~~~~~~~~~~~~ 130 (247)
T 2ghw_B 83 LQMNSLRAEDTAVYYCARDRSYY-L-------------------------------DYWGQGTLVTVSSGGGGSGGGGSG 130 (247)
T ss_dssp EEECSCCGGGCEEEEEEEEETTE-E-------------------------------EEECCCEEEEECSCC---------
T ss_pred EEECcCCHHHCEEEEEeeeccCC-c-------------------------------cccCCceEEEEecccccccccccC
Confidence 55555555555555554433200 0 00111123444332
Q ss_pred -----CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 162 -----PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 162 -----p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
+.+.. .+....+.+|+++.|.|.+.+.|.+.+.|++.
T Consensus 131 ~~~~~~~~~~--~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~ 172 (247)
T 2ghw_B 131 GGGSETTLTQ--SPATLSLSPGERATLSCRASQSVRSNLAWYQQ 172 (247)
T ss_dssp ---CCCCEEE--ECSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred CCCcceEEEc--cCCEEEecCCCcEEEEEEeCCCccceEEEEEE
Confidence 22222 23355688999999999999998889999983
No 161
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.53 E-value=7.6e-13 Score=99.31 Aligned_cols=142 Identities=22% Similarity=0.347 Sum_probs=80.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEe--eeceeeeCCceEEEEc-CCceE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSI--HHNVITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~--~~~~~~~~~~~~~~~~-~~~~~ 90 (215)
..+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|... .. +... .........|+..... ....+
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 76 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPY-------LFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSF 76 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCE-------EEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEE
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCce-------EEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEE
Confidence 4566778889999999999999999877666 99998531 11 1111 0111122345544321 22344
Q ss_pred EEEEccceecCCEEEEEEccCCCc-eEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEc---------
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPR-ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV--------- 160 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--------- 160 (215)
+|.|.+++.+|+|.|+|.+.+... ... .......|.|..
T Consensus 77 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~-------------------------------~~~~~~~l~V~~~~~~~~~~~ 125 (256)
T 3tf7_C 77 HLRKASVHRSDSAVYFCAVSAKGTGSKL-------------------------------SFGKGAKLTVSPGGGGSGGGG 125 (256)
T ss_dssp EEEESSCCGGGCSEEEEEEECTTCTTCE-------------------------------EECCCEEEEEEC---------
T ss_pred EEEECCCCcccCEEEEEEEecCCCccce-------------------------------EECCCeEEEEeCCCCCcCCCC
Confidence 455555555544444444433210 000 011112333332
Q ss_pred -----------CCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 161 -----------PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 161 -----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
++.+.. .+....+.+|++++|.|.+.+. .+.+.|++.
T Consensus 126 ~~~~~~~~~~~~~~v~~--~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~ 173 (256)
T 3tf7_C 126 SGGGGSGGGGSEAAVTQ--SPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQ 173 (256)
T ss_dssp ------------CCEEE--SCSEEEEETTCCEEECEEECSC-CSEEEEEEE
T ss_pred cCcccCCCCcCccEEEe--cCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEE
Confidence 333333 3445567899999999999876 678999983
No 162
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.53 E-value=4.5e-13 Score=101.12 Aligned_cols=144 Identities=20% Similarity=0.273 Sum_probs=80.7
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccC------CccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLK------GFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLT 83 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~------~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~ 83 (215)
+..+.+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. .+....... ....|+...
T Consensus 3 ~~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~-------v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~ 75 (264)
T 2gjj_A 3 EADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNY-------LAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGS 75 (264)
T ss_dssp CCCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEEC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEE
T ss_pred ccccceEecCCeEEecCCCcEEEEeEcCCcccccccCCce-------EEEEEECCCCCcEEEEEecccCCCCCCccEEEe
Confidence 3456677778889999999999999998765 344 9999963 221 111100000 012455443
Q ss_pred EcCCceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC-
Q psy5838 84 YNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP- 162 (215)
Q Consensus 84 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p- 162 (215)
.. ...+.|.|.+++.+|+|.|.|.+.+.... .......|.|..+|
T Consensus 76 ~~-~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~---------------------------------~~~~~~~L~V~~~~~ 121 (264)
T 2gjj_A 76 GS-GTDFTLTIGSVKAEDLAVYYCQQYSNYPW---------------------------------TFGGGTRLEIKRGGG 121 (264)
T ss_dssp EE-TTEEEEEESSCCGGGCEEEEEEECSSSSC---------------------------------EECCCEEEEEECC--
T ss_pred cC-CCEEEEEECCCCHHHCEEEEEEEecCCcc---------------------------------EecCCEEEEEEcCCc
Confidence 32 23445555555555555555544432110 01112234444332
Q ss_pred -----------------eEEecCCCcceeeecCCcEEEEEEecccCC--CeEEEEeC
Q psy5838 163 -----------------SIIDKDTSTDLVVREQANVTLNCKAQGYPE--PYVMWRRE 200 (215)
Q Consensus 163 -----------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~ 200 (215)
.+... .+....+.+|+++.|.|.+.+.|. +.+.|++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~ 177 (264)
T 2gjj_A 122 GSGGGGSGGGGSGGGGSEVQLQ-QSGPEVVKTGASVKISCKASGYSFTGYFINWVKK 177 (264)
T ss_dssp -----------------CCEEE-ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred ccccccccccccccccCcEEEe-CCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence 11111 122335889999999999988764 78999994
No 163
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=102.81 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC---CccEEEeee---ceeee----CCceEEE-Ec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD---TQTILSIHH---NVITQ----NPRISLT-YN 85 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~---~~~~~~~~~---~~~~~----~~~~~~~-~~ 85 (215)
.|.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|.. ...++.... ..... ..+.... ..
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 74 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGY-------IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGS 74 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CE-------EEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcE-------EEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecC
Confidence 35677778899999999999999999877665 9999942 111111110 00000 0111111 11
Q ss_pred CCceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC----CcceeeEEEEEcC
Q psy5838 86 DHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVVVP 161 (215)
Q Consensus 86 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~~ 161 (215)
....++ |.|.+++.+|+|.|.|.+.+.. .......+.|..+
T Consensus 75 ~~~~~~-----------------------------------L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~ 119 (259)
T 3omz_A 75 TRKNLR-----------------------------------MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK 119 (259)
T ss_dssp --CCCE-----------------------------------EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred CCCeEE-----------------------------------EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence 112233 5555555555566666554321 1122234444432
Q ss_pred -----------------CeEEecCCCcceeeecCCcEEEEEEeccc-CCCeEEEEeC
Q psy5838 162 -----------------PSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYVMWRRE 200 (215)
Q Consensus 162 -----------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~ 200 (215)
+.+. ..+....+.+|+++.|.|.+.+. |.+.+.|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 174 (259)
T 3omz_A 120 QGSADDAKKDAAKKDGAQKVT--QAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR 174 (259)
T ss_dssp -----------------CEEE--CCCCCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred CCCccccccccccccCCeeeE--EeCCEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence 2223 23455678999999999998774 7789999984
No 164
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.53 E-value=2.7e-13 Score=101.06 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=76.0
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccC-----CccceeeeEEEEEEecCC-ccE--EEeeecee--eeCCceEEEEcCCc
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLK-----GFKGLRIGWQVAWVRVDT-QTI--LSIHHNVI--TQNPRISLTYNDHR 88 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~-----~~~~~~~~~~v~W~~~~~-~~~--~~~~~~~~--~~~~~~~~~~~~~~ 88 (215)
.+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+.. ..+ +....... ....|+..... ..
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~ 74 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTY-------LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS-GT 74 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC-------EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TT
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCce-------EEEEEECCCCCceEEEEEecccCCCCCCcEEeccC-CC
Confidence 455567788999999999999998766 455 99999542 221 11100000 01234443321 12
Q ss_pred eEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEcCC----
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVVPP---- 162 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p---- 162 (215)
.+.|. |.+++.+|+|.|.|.+.+... ......|.|..++
T Consensus 75 ~~~L~-----------------------------------I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~ 119 (247)
T 1svz_A 75 DFTLK-----------------------------------ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGG 119 (247)
T ss_dssp EEEEE-----------------------------------ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-------
T ss_pred EEEEE-----------------------------------ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccc
Confidence 33444 555555555555555533211 1122344444332
Q ss_pred --------eEEecCCCcceeeecCCcEEEEEEecccC--CCeEEEEeC
Q psy5838 163 --------SIIDKDTSTDLVVREQANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 163 --------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
.+... .+....+.+|+++.|.|.+.+.| .+.+.|++.
T Consensus 120 ~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 166 (247)
T 1svz_A 120 GGSGGGGSEVQLQ-QSGPELKKPGETVKISCKATNYAFTDYSMHWVKQ 166 (247)
T ss_dssp --------CCEEE-ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred cccccccCceEEe-CCCceeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence 11111 12233588999999999998875 468999994
No 165
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.53 E-value=3e-13 Score=102.62 Aligned_cols=125 Identities=20% Similarity=0.411 Sum_probs=87.3
Q ss_pred CCcccCC-CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEP-IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~-~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.+... +....+.+|+.+.|.|.+.+.+.+. +.|+++ +..+ ....++...... ....|.|.
T Consensus 98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-------v~W~~~-~~~~--------~~~~~~~~~~~~-~~~~L~i~ 160 (284)
T 2rik_A 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK-------VLWYKD-ETEI--------QESSKFRMSFVE-SVAVLEMY 160 (284)
T ss_dssp CCEEEECCCSEEEEETTCCEEEEEEEESSSCCE-------EEEEET-TEEC--------CCSSSEEEEEET-TEEEEEEC
T ss_pred CCcccccCCCceEecCCceEEEEEEEeeeCCCE-------EEEEEC-CEEC--------cCCCcEEEEEcC-CEEEEEEC
Confidence 4555544 3456688999999999999887776 999994 4432 122333333322 46789999
Q ss_pred cceecCCEEEEEEccC------------------------------------------CCceEEEEccC-----------
Q psy5838 96 NVQESDRGWYMCQVNT------------------------------------------NPRISLTYNDH----------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~------------------------------------------~~~~~~~~~~~----------- 122 (215)
+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 161 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~ 240 (284)
T 2rik_A 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240 (284)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEE
T ss_pred CCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEE
Confidence 9999999999999763 35566666321
Q ss_pred -----CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEE
Q psy5838 123 -----RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQV 158 (215)
Q Consensus 123 -----~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 158 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.|.|
T Consensus 241 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 282 (284)
T 2rik_A 241 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282 (284)
T ss_dssp EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence 1256889999999999999999763 44444445554
No 166
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.53 E-value=7.4e-14 Score=99.53 Aligned_cols=129 Identities=23% Similarity=0.311 Sum_probs=78.0
Q ss_pred CCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeec-ee---eeC--CceEEEEcCCceEEEEEcc
Q psy5838 24 IPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHN-VI---TQN--PRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~l~i~~ 96 (215)
...+.+.+|++|+|.|.+.++ +.+. +.|++.+...+...... .. ... +|+.+.
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~-------i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~------------- 65 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQR-------LTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD------------- 65 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSE-------EEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC-------------
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeE-------EEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe-------------
Confidence 357889999999999998542 2344 99999533333322111 00 000 222220
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeee
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVR 176 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 176 (215)
..+..|.|.+++.+|+|.|.|.+.+.......+.|.|..++..+ . ...
T Consensus 66 -------------------------~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P------~-i~~ 113 (180)
T 2dru_A 66 -------------------------KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKP------M-IYW 113 (180)
T ss_dssp -------------------------TTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCCC------E-EEE
T ss_pred -------------------------CCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCCC------E-EEe
Confidence 11234777778888888888887544333445567776543211 1 122
Q ss_pred cCCcEEEEEEe-cccCCCeEEEEeCCCcccc
Q psy5838 177 EQANVTLNCKA-QGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 177 ~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~ 206 (215)
.+.++.|.|.+ .+ |.|.+.|++ ++..+.
T Consensus 114 ~~~~v~L~C~~~~g-p~p~i~W~~-~~~~l~ 142 (180)
T 2dru_A 114 ECSNATLTCEVLEG-TDVELKLYQ-GKEHLR 142 (180)
T ss_dssp EGGGTEEEEECSSC-TTCEEEEEE-TTEEEE
T ss_pred cCCCEEEEEEeCCC-CCCEEEEEE-CCeECc
Confidence 45779999999 66 889999999 776654
No 167
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.52 E-value=1.1e-13 Score=101.05 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCceEEEeC--CcEEEEEEeeccCCccceeeeEEEEEEec--CCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 24 IPNVTVTVG--RDALLACVVDNLKGFKGLRIGWQVAWVRV--DTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 24 ~~~~~~~~G--~~v~L~C~~~~~~~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
+..+.+.+| ++++|.|.+.++ .+. +.|++. ++..+. ...++.... .
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~p-~~~-------v~w~~~~~~g~~~~--------~~~~~~~~~----~---------- 63 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSIS-NLN-------VSLCARYPEKRFVP--------DGNRISWDS----K---------- 63 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSST-TCC-------EEEEEETTTEEECC--------CSSSCEEET----T----------
T ss_pred ceEEEEecCCCccEEEeeccCCC-CcE-------EEEEhhcCCCcccc--------CCCcccccC----C----------
Confidence 468889999 999999999864 455 999884 333221 111111110 0
Q ss_pred cCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCc--ceeeEEEEEc--CCeEEecCCCcceee
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR--SRQGYLQVVV--PPSIIDKDTSTDLVV 175 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~--~p~~~~~~~~~~~~~ 175 (215)
..|.|.+++.+|+|.|+|.+.+.+.. +..+.+.|.. +|.+... ....+.+
T Consensus 64 -------------------------~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~-~~~~~~v 117 (213)
T 2x1w_L 64 -------------------------KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS-PSHGIEL 117 (213)
T ss_dssp -------------------------TEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEE-SCSCEEE
T ss_pred -------------------------ccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEc-CCCCeEE
Confidence 12567777777888888887553322 2224555543 2233322 2334468
Q ss_pred ecCCcEEEEEEecccCC--CeEEEEeCCCcc
Q psy5838 176 REQANVTLNCKAQGYPE--PYVMWRREDGAN 204 (215)
Q Consensus 176 ~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~ 204 (215)
.+|+++.|.|.+.+.|. +.+.|++ +|..
T Consensus 118 ~~G~~v~L~C~~~g~p~~~~~i~W~~-~g~~ 147 (213)
T 2x1w_L 118 SVGEKLVLNCTARTELNVGIDFNWEY-PSSK 147 (213)
T ss_dssp ETTCCEEEEEEEEECTTBCCEEEEEC-SCSS
T ss_pred cCCCCEEEEEEEECCCCCceEEEEEe-cCCc
Confidence 89999999999998653 4799999 5554
No 168
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.52 E-value=4.1e-13 Score=109.47 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCc-ceeeEEE---EEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEe
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQ---VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRR 199 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~ 199 (215)
.|.|.+++.+|+|.|+|.+.+.... .....+. +..+|.+...... ...+.+|+.+.|.|.+.|+ |+ +.+.|++
T Consensus 310 ~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~-~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k 388 (475)
T 1iga_A 310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP-SEELALNELVTLTCLARGFSPKDVLVRWLQ 388 (475)
T ss_pred EEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCC-hHHhccCCceEEEEEEeeeECCCCEEEEEE
Confidence 4889999999999999999764322 2223342 2466776554222 2236789999999999986 43 4899999
Q ss_pred CCCccccc
Q psy5838 200 EDGANLSY 207 (215)
Q Consensus 200 ~~~~~~~~ 207 (215)
||..+..
T Consensus 389 -~g~~l~~ 395 (475)
T 1iga_A 389 -GSQELPR 395 (475)
T ss_pred -CCEECCC
Confidence 7877653
No 169
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.52 E-value=6.8e-14 Score=113.03 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=52.8
Q ss_pred EEEEEcccCCCCCeEEEEEeecCCC-cceeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDPM-RSRQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMW 197 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W 197 (215)
..|.|.+++.+|+|.|+|.+.+... ......+ .+..+|.+....... ..+..| .+.|.|.+.| .|.+ .+.|
T Consensus 305 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~~~-~~~L~C~~~g~~P~~~~v~W 382 (444)
T 1igt_B 305 SALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPE-EEMTKK-QVTLTCMVTDFMPEDIYVEW 382 (444)
T ss_dssp EEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCG-GGTTSS-EEEEEEEEEEEBSSCCEEEE
T ss_pred EEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCCh-HHccCC-eEEEEEEEEeeeCCCCEEEE
Confidence 3688999999999999999976432 2122233 344577766543222 223344 5999999998 5666 8999
Q ss_pred EeCCCcccc
Q psy5838 198 RREDGANLS 206 (215)
Q Consensus 198 ~~~~~~~~~ 206 (215)
++ +|..+.
T Consensus 383 ~k-~g~~l~ 390 (444)
T 1igt_B 383 TN-NGKTEL 390 (444)
T ss_dssp EE-TTEECS
T ss_pred EE-CCEEcc
Confidence 99 776653
No 170
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.51 E-value=1.7e-13 Score=100.03 Aligned_cols=135 Identities=21% Similarity=0.285 Sum_probs=75.2
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEE---Eeeece-----eeeCCceEEEEcCCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTIL---SIHHNV-----ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~l 92 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|.. +.... ...... .....|+.+..
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------- 70 (215)
T 3nl4_H 6 SGGRLVTPGTPLTLACTVSGFSLNTYS-------MFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK-------- 70 (215)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTTTCC-------EEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--------
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCCe-------EEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--------
Confidence 4578899999999999998632 333 9999853 22211 110000 00123333332
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC-----cceeeEEEEE----cCCe
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM-----RSRQGYLQVV----VPPS 163 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~----~~p~ 163 (215)
......|.|.+++.+|+|.|.|.+.+... ......+.|. .+|.
T Consensus 71 ----------------------------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~ 122 (215)
T 3nl4_H 71 ----------------------------TSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPS 122 (215)
T ss_dssp ----------------------------CSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCE
T ss_pred ----------------------------eCCEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCE
Confidence 12234466666777777777777654321 2233456665 3455
Q ss_pred EEecCCCcceeeecCCcEEEEEEecccCCC--eEEEEeCCCcc
Q psy5838 164 IIDKDTSTDLVVREQANVTLNCKAQGYPEP--YVMWRREDGAN 204 (215)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~ 204 (215)
+..... ...+.+|+.+.|.|.+.+.+++ .+.|++ +|..
T Consensus 123 i~~~~~--~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~-~g~~ 162 (215)
T 3nl4_H 123 VFPLAP--CCGDTPSSTVTLGCLVKGYLPEPVTVTWNS-GTLT 162 (215)
T ss_dssp EEEECC--CTTCCC--CEEEEEEEEEEBSSCCEEEEGG-GTBC
T ss_pred EEEecC--CccccCCCcEEEEEEEeeeeCCCeEEEEee-CCEE
Confidence 543222 2235579999999999886433 578999 6653
No 171
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.51 E-value=2.7e-13 Score=101.56 Aligned_cols=144 Identities=17% Similarity=0.335 Sum_probs=83.9
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeec--ee---eeCCceEEEEcCCce
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHN--VI---TQNPRISLTYNDHRS 89 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~--~~---~~~~~~~~~~~~~~~ 89 (215)
+.+...+..+.+.+|++|+|.|.+.. +.+. +.|+|+.. .. ++..... .. ....|+.+....
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~~-~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~--- 72 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQNL-NHDA-------MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK--- 72 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEECS-CCSE-------EEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS---
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeCC-CCCE-------EEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecC---
Confidence 34566778899999999999999853 3344 99999642 21 1111000 00 011233222111
Q ss_pred EEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC----CcceeeEEEEEc-----
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVVV----- 160 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~----- 160 (215)
.....|.|.+++.+|+|.|.|.+.+.. .......+.|..
T Consensus 73 --------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~ 120 (252)
T 1oga_E 73 --------------------------------KESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNV 120 (252)
T ss_dssp --------------------------------TTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGC
T ss_pred --------------------------------CCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCC
Confidence 122346777777778888888775431 111223455542
Q ss_pred -CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 161 -PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 161 -~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
+|.+... .+....+.+|+.+.|.|.+.+. |.+ .+.|++ ||..+.
T Consensus 121 ~~P~v~~~-~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~l~ 167 (252)
T 1oga_E 121 FPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH 167 (252)
T ss_dssp BCCEEEEE-CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEEC
T ss_pred CCCeEEEE-CCChhhhccCCceEEEEEEeeEcCCCcEEEEEE-CCEECC
Confidence 4555443 1222234579999999999985 754 899999 777664
No 172
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=102.82 Aligned_cols=141 Identities=18% Similarity=0.294 Sum_probs=80.7
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccE--E-Eeeece----eeeCC-ceEEEEcCCceEE
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTI--L-SIHHNV----ITQNP-RISLTYNDHRSWF 91 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~--~-~~~~~~----~~~~~-~~~~~~~~~~~~~ 91 (215)
...+..+.+.+|++|+|.|.+.+.+.+. +.|+|.. +... + ...... ....+ |+.+....
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----- 72 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPW-------MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT----- 72 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCC-------EEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCS-----
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcce-------EEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCC-----
Confidence 3446678999999999999988766665 9999842 1111 1 100000 00001 22222211
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC-------cceeeEEEEE-----
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM-------RSRQGYLQVV----- 159 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~----- 159 (215)
... |.|.+++.+|+|.|.|.+.+... ......+.|.
T Consensus 73 ------------------------------~~~--L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~ 120 (253)
T 3to4_D 73 ------------------------------DTE--LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN 120 (253)
T ss_dssp ------------------------------SSC--CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTT
T ss_pred ------------------------------CCe--EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCC
Confidence 111 66777777777777777753211 1122345554
Q ss_pred -cCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCccccc
Q psy5838 160 -VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGANLSY 207 (215)
Q Consensus 160 -~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~~~~~ 207 (215)
.+|.+... .+....+..|+.+.|.|.+.+ .|.+ .+.|++ ||..+..
T Consensus 121 ~~~P~v~~~-~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~l~~ 169 (253)
T 3to4_D 121 VFPPEVAVF-EPSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHS 169 (253)
T ss_dssp CBCCEEEEE-ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECT
T ss_pred CCCCeEEEe-CCChhhcccCCceEEEEEEceEECCcEEEEEEE-CCEECCC
Confidence 34444432 112222345789999999988 6766 899999 7877653
No 173
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.51 E-value=3e-13 Score=98.93 Aligned_cols=138 Identities=23% Similarity=0.373 Sum_probs=79.7
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeece-e----eeCCceEEEEcCCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHNV-I----TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~~~l 92 (215)
|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. ++...... . ...+|+.+..+..
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~----- 74 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNG-------VSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS----- 74 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCC-------EEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT-----
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCe-------EEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC-----
Confidence 4567889999999999998753 244 9999864 221 11111000 0 0123443332210
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC----CcceeeEEEEEc----CCeE
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVVV----PPSI 164 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~----~p~~ 164 (215)
.....|.|.+++.+|+|.|.|.+.+.. .......|.|.. +|.+
T Consensus 75 -----------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i 125 (215)
T 1c5d_H 75 -----------------------------KSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSV 125 (215)
T ss_dssp -----------------------------TTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCE
T ss_pred -----------------------------CceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeE
Confidence 112346666666677777777765432 112234566652 3444
Q ss_pred EecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 165 IDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 165 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
...... ..+..|+.+.|.|.+.+. |.+ .+.|++ +|..+
T Consensus 126 ~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g~~~ 165 (215)
T 1c5d_H 126 YPLAPG--CGDTTSSTVTLGCLVKGYFPEPVTVTWNS-GALSS 165 (215)
T ss_dssp EEECCC--SSCCCCSSEEEEEEEEEEBSSCCEEEEGG-GTTCC
T ss_pred EeccCC--hhhccCCcEEEEEEEeeeEcCCcEEEEcc-CCccC
Confidence 432211 224689999999999886 877 999999 56543
No 174
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-13 Score=87.10 Aligned_cols=94 Identities=19% Similarity=0.331 Sum_probs=65.5
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|+++.|.|.+ .+.+. +.|+| ++..+ ....++.+...+ ..
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~-------v~W~k-~g~~l--------~~~~r~~i~~~~-~~---- 60 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIP-------GKWTK-NGLPV--------QESDRLKVVQKG-RI---- 60 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCC-------EEEEE-TTEEC--------CCCSSEEEEECS-SE----
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCe-------EEEEE-CCEEC--------CCCCcEEEEEeC-CE----
Confidence 3457889999999999999999999999 55566 99999 55443 234455444332 12
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+. .....+.|.|..+|
T Consensus 61 -------------------------------~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 61 -------------------------------HKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVISGP 97 (100)
T ss_dssp -------------------------------EEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEECCS
T ss_pred -------------------------------EEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEeCCC
Confidence 23667777777788888887655 44566677777665
No 175
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.51 E-value=5e-13 Score=98.11 Aligned_cols=135 Identities=19% Similarity=0.349 Sum_probs=77.9
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeeec----e--eeeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHHN----V--ITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~~----~--~~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|.. +..+ +..... . .....|+.+..+ ....+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~- 79 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYW-------MSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSL- 79 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEE-
T ss_pred CCeEecCCCcEEEEEEecCccCCCce-------EEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEE-
Confidence 468899999999999998654 334 9999864 2221 111100 0 001244444432 11223
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----cceeeEEEEEc----CCe
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----RSRQGYLQVVV----PPS 163 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~p~ 163 (215)
.|.|.+++.+|+|.|.|.+.+... ......|.|.. +|.
T Consensus 80 ----------------------------------~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~ 125 (220)
T 2fbj_H 80 ----------------------------------YLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPT 125 (220)
T ss_dssp ----------------------------------EEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCE
T ss_pred ----------------------------------EEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCE
Confidence 455666666666666666644321 11224566653 344
Q ss_pred EEecCCCcceeeecCCcEEEEEEeccc-CC--CeEEEEeCCCccc
Q psy5838 164 IIDKDTSTDLVVREQANVTLNCKAQGY-PE--PYVMWRREDGANL 205 (215)
Q Consensus 164 ~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~~~~~~~ 205 (215)
+.... ...+..|+.+.|.|.+.+. |. +.+.|++ ++..+
T Consensus 126 v~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~-~~~~~ 166 (220)
T 2fbj_H 126 IYPLT---LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDI 166 (220)
T ss_dssp EEEEC---CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC-CCSSC
T ss_pred EEEee---cccccCCCcEEEEEEEEeEECCCcEEEEEec-CCEec
Confidence 44322 2235689999999999886 76 6899999 66554
No 176
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.51 E-value=3.8e-13 Score=101.05 Aligned_cols=134 Identities=21% Similarity=0.342 Sum_probs=77.0
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeece-----eeeCCceEEEEc-CCceEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHNV-----ITQNPRISLTYN-DHRSWFL 92 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~-----~~~~~~~~~~~~-~~~~~~l 92 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. +....... .....|+.+..+ ....
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~p~~~~~-------v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~--- 77 (257)
T 1f3r_B 8 GPGLVRPSETLSLTCTVSGFSLTSFS-------VSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQ--- 77 (257)
T ss_dssp CCSEECTTSEEEEEEEEESSCTTTSC-------CEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTE---
T ss_pred CCccccCCceEEEEEEEecccCCCcc-------EEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCE---
Confidence 356789999999999998764 455 8999853 211 11111000 001234444332 1122
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC--------C--cceeeEEEEEcCC
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP--------M--RSRQGYLQVVVPP 162 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--------~--~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|.|.+.+.. . ......|.|..++
T Consensus 78 --------------------------------~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~ 125 (257)
T 1f3r_B 78 --------------------------------VFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG 125 (257)
T ss_dssp --------------------------------EEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred --------------------------------EEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence 345566666666666666664431 0 1122345555433
Q ss_pred -------------eEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 163 -------------SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 163 -------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
.......+....+.+|+++.|.|.+.+.|.+.+.|++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~ 176 (257)
T 1f3r_B 126 GGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQ 176 (257)
T ss_dssp CSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred ccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEE
Confidence 11111123345688999999999999988889999994
No 177
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.51 E-value=3.1e-13 Score=101.35 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=76.1
Q ss_pred CCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-ccEEE---eeece-----eeeCCceEEEEcCCceEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QTILS---IHHNV-----ITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~ 91 (215)
.+..+.+.+|++|+|.|.+.+.+ .+. +.|+|... ..... ..... .....|+.+..+.
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----- 81 (257)
T 3gkz_A 14 ESGPSLVKPSQTLSLTCSVTGDSVTSGY-------WSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDT----- 81 (257)
T ss_dssp EECCSEECTTCCEEEEEEEEESCCSSCE-------EEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEG-----
T ss_pred CCCCeEEcCCCcEEEEEEEEcccccceE-------EEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEec-----
Confidence 35567799999999999998743 344 99999532 21111 10000 0012344333221
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEEcC-----
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVVVP----- 161 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~~----- 161 (215)
......|.|.+++.+|+|.|.|.+.+.. .......+.|..+
T Consensus 82 -----------------------------~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~ 132 (257)
T 3gkz_A 82 -----------------------------SKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGG 132 (257)
T ss_dssp -----------------------------GGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC-------
T ss_pred -----------------------------CCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcc
Confidence 1122345555666666666666654320 0112234555433
Q ss_pred -------CeEEecCCCcceeeecCCcEEEEEEecccCCC-eEEEEeC
Q psy5838 162 -------PSIIDKDTSTDLVVREQANVTLNCKAQGYPEP-YVMWRRE 200 (215)
Q Consensus 162 -------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~ 200 (215)
+.......+....+.+|+++.|.|.+.+.|.+ .+.|++.
T Consensus 133 ~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 179 (257)
T 3gkz_A 133 GGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQ 179 (257)
T ss_dssp --CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEE
T ss_pred cccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEE
Confidence 11112223445678899999999999998777 8999983
No 178
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-12 Score=106.80 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=55.1
Q ss_pred CCceEEEeCCcEEEEEEeeccCCcc-ceeeeEEEEEEecC-Ccc---EEEeeece-----eeeCCceEEEEcC-CceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFK-GLRIGWQVAWVRVD-TQT---ILSIHHNV-----ITQNPRISLTYND-HRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~-~~~~~~~v~W~~~~-~~~---~~~~~~~~-----~~~~~~~~~~~~~-~~~~~l 92 (215)
+..+.+.+|++++|.|.+.+.+... +. .+.|||+. +.. ++...... ....+|+.+..+. ...++|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~----~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGY----YWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSL 82 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCe----eEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEE
Confidence 4578899999999999998643211 12 19999863 222 22211110 0124677776542 356899
Q ss_pred EEccceecCCEEEEEEcc
Q psy5838 93 NIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.+++.+|+|.|+|.+.
T Consensus 83 ~I~~v~~~Dsg~Y~C~~~ 100 (512)
T 1zvo_C 83 NLRSMSAADTAMYYCARG 100 (512)
T ss_pred EECcCCHHHCEEEEEEEE
Confidence 999999999999999863
No 179
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.51 E-value=7e-13 Score=100.96 Aligned_cols=135 Identities=16% Similarity=0.283 Sum_probs=76.4
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-ccE---EEeeec------eeeeCCceEEEEc-CC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QTI---LSIHHN------VITQNPRISLTYN-DH 87 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~~---~~~~~~------~~~~~~~~~~~~~-~~ 87 (215)
...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+.. ..+ ...... ......|+.+..+ ..
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 102 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSY-------MHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSS 102 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSC-------EEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCce-------EEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCC
Confidence 3446688999999999999998764 344 99999642 211 111100 0011245544432 11
Q ss_pred ceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC------cceeeEEEEEcC
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM------RSRQGYLQVVVP 161 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~ 161 (215)
..++|.|.+ ++.+|+|.|.|.+.+... ......+.|..+
T Consensus 103 ~~~sL~I~~-----------------------------------v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~ 147 (282)
T 1qok_A 103 NTAYLQLSS-----------------------------------LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSG 147 (282)
T ss_dssp TEEEEEECS-----------------------------------CCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred CeEEEEECc-----------------------------------CChhhCEEEEEEeccCCCccceeeeCCCEEEEEecC
Confidence 234455544 555555555555533210 112234555543
Q ss_pred C---------------eEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeC
Q psy5838 162 P---------------SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200 (215)
Q Consensus 162 p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 200 (215)
| .+.. .+....+.+|+++.|.|.+.+.| +.+.|++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~ 198 (282)
T 1qok_A 148 GGGSGGGGSGGGGSENVLTQ--SPAIMSASPGEKVTITCSASSSV-SYMHWFQQ 198 (282)
T ss_dssp --------------CCCEEE--ECSEEEECTTCCEEEEEEESSCC-SCCEEEEE
T ss_pred CcccCCccCCCCccceEEec--CCCEEEEcCCCcEEEEEEecCCC-ceEEEEEE
Confidence 2 1221 23455688999999999999988 89999994
No 180
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=1.8e-14 Score=112.91 Aligned_cols=131 Identities=21% Similarity=0.318 Sum_probs=92.4
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+....+.+|++++|.|.+.+.+.+. +.|+++++...... .+. ..
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-------i~W~~~~~~~~~~~--------~~~----~~--------- 208 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ-------AGWILTELEQSATV--------MKS----GG--------- 208 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCC-------CCEEESCCCSSEEE--------CCC----CC---------
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCE-------EEEEcCCceeeccc--------ccc----ee---------
Confidence 468888778888999999999999999888877 99999654322100 000 00
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCe-EEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcce
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRG-WYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDL 173 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~ 173 (215)
.....|.|.+++.+|+| .|+|.+.+. +.....+.+.|..+|.+ . ..
T Consensus 209 --------------------------~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~-----~~ 256 (347)
T 2ifg_A 209 --------------------------LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-Q-----LH 256 (347)
T ss_dssp --------------------------SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-E-----EC
T ss_pred --------------------------cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-e-----ec
Confidence 11234667778888888 888888653 33344555666666665 1 11
Q ss_pred eeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 174 VVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 174 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
...+|+.+.|.|.+.|.|.|.+.|++ +|..+..
T Consensus 257 ~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~ 289 (347)
T 2ifg_A 257 TAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNE 289 (347)
T ss_dssp CCEESSSEEEEEEEEEESCCEEEEEE-TTEECCC
T ss_pred cCccCceEEEEEEeeecCCCcEEEEe-CCEECCC
Confidence 24579999999999999999999999 7777663
No 181
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.50 E-value=1.9e-13 Score=98.68 Aligned_cols=74 Identities=28% Similarity=0.441 Sum_probs=50.8
Q ss_pred EEEEcccCCCCCeEEEEEeecCC-Cc-----ceeeEEEEEcC---CeEEecCCCcceeeecCCcEEEEEEec-ccCCCeE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDP-MR-----SRQGYLQVVVP---PSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYV 195 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~-~~-----~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i 195 (215)
.|.|.+++.+|+|.|+|.+.+.. .. ...+.|.|..+ |.+... ....|+.+.|.|.+. +.|.|.+
T Consensus 66 ~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~------~~~~g~~~~l~C~~~~g~P~p~i 139 (201)
T 1dr9_A 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF------EIPTSNIRRIICSTSGGFPEPHL 139 (201)
T ss_dssp EEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE------ECSSTTEEEEEEEEEEESSCEEE
T ss_pred EEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec------cCCCCCeEEEEEecCCccCCCEE
Confidence 47788888888888888886532 22 23455666554 222211 124588999999995 8999999
Q ss_pred EEEeCCCcccc
Q psy5838 196 MWRREDGANLS 206 (215)
Q Consensus 196 ~W~~~~~~~~~ 206 (215)
.|++ +|..+.
T Consensus 140 ~W~k-~g~~l~ 149 (201)
T 1dr9_A 140 SWLE-NGEELN 149 (201)
T ss_dssp EEEE-SSCEEC
T ss_pred EEEE-CCEECc
Confidence 9999 777665
No 182
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.50 E-value=5.4e-14 Score=90.51 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=37.3
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
..+|.|...+..+.+.+|+++.|.|.+.+.|.+. +.|+++ +..
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~-------v~W~k~-g~~ 45 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPE-------VTWSCG-GRK 45 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCE-------EEEEET-TEE
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCE-------EEEEEC-ceE
Confidence 3468898889999999999999999999998887 999994 443
No 183
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.50 E-value=4e-14 Score=104.57 Aligned_cols=144 Identities=14% Similarity=0.267 Sum_probs=69.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-ccEE-Eeeec-ee--eeCCceEEEEcCCceEE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QTIL-SIHHN-VI--TQNPRISLTYNDHRSWF 91 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~ 91 (215)
.+.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|+.. ..+. ..... .. ....|+.....
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------ 89 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDD-------MNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGY------ 89 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSC-------EEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEE------
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCe-------EEEEEECCCCCcEEEEEcCCccCCCCCccEEeecc------
Confidence 45566667888999999999999998876665 99998542 2111 00000 00 00112111100
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--cceeeEEEEEc---CCeEEe
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--RSRQGYLQVVV---PPSIID 166 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~p~~~~ 166 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|.. +|.+..
T Consensus 90 ------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~ 139 (233)
T 3bqu_C 90 ------------------------------GTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSI 139 (233)
T ss_dssp ------------------------------EEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEE
T ss_pred ------------------------------CCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEE
Confidence 0123477788888888888888854321 12223355543 555554
Q ss_pred cCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANLS 206 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~~ 206 (215)
..... .+.+|+.+.|.|.+.+. |.+ .+.|++ +|..+.
T Consensus 140 ~~~~~--~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~ 178 (233)
T 3bqu_C 140 FPPSS--EQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQ 178 (233)
T ss_dssp ECCCH--HHHHTTEEEEEEEEEEEBSSCEEEEEEE-C-----
T ss_pred eCCCH--HhhcCCceEEEEEEccccCCceEEEEEE-CCeeCC
Confidence 32221 23469999999999885 444 799999 776654
No 184
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.50 E-value=9.3e-13 Score=96.56 Aligned_cols=77 Identities=23% Similarity=0.556 Sum_probs=49.1
Q ss_pred EEEEEcccCCCCCeEEEEEeecCC---CcceeeEEEEE----cCCeEEecCCCcceeeecCCcEEEEEEecc-cCC-C-e
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVV----VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPE-P-Y 194 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~ 194 (215)
..|.|.+++.+|+|.|.|.+.+.. .......+.|. .+|.+.... +... .+|+.+.|.|.+.+ .|. + .
T Consensus 81 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~~--~~g~~v~L~C~~~~~~P~~~~~ 157 (221)
T 3m8o_H 81 AFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLS-LCST--QPDGNVVIACLVQGFFPQEPLS 157 (221)
T ss_dssp EEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEE-CCSC--CCTTEEEEEEEEEEEBSSCSEE
T ss_pred EEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEec-Cccc--ccCCCEEEEEEEEeeECCCCEE
Confidence 456777777777777888775432 22333456664 234443221 1111 68999999999988 676 4 8
Q ss_pred EEEEeCCCccc
Q psy5838 195 VMWRREDGANL 205 (215)
Q Consensus 195 i~W~~~~~~~~ 205 (215)
+.|++ +|..+
T Consensus 158 v~W~~-~g~~~ 167 (221)
T 3m8o_H 158 VTWSE-SGQGV 167 (221)
T ss_dssp EEESC-CSTTC
T ss_pred EEEEE-CCEEC
Confidence 99999 77665
No 185
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.50 E-value=1.1e-12 Score=98.76 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=82.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+|.|...|. ..+.+|++|+|.|...+. .+. +.|+|++.. +..... . .+ ......
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~~-~~~-------~~W~k~g~~-~~~~~~---~--~~---~~~~~~------- 60 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDVR-FQH-------FLLHREGKF-KDTLHL---I--GE---HHDGVS------- 60 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESSC-CSE-------EEEEEESTT-CEEEEE---E--CB---CCTTCE-------
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCCC-CcE-------EEEEECCCC-CCccee---e--ee---ccCCCc-------
Confidence 4677766665 678899999999998743 344 899995433 211000 0 00 000001
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC------CCcceeeEEEEEc---CCeEEe
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD------PMRSRQGYLQVVV---PPSIID 166 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~------~~~~~~~~l~v~~---~p~~~~ 166 (215)
+..|.|.+++.+|+|.|+|.+.+. ...+..+.|.|.. +|.+..
T Consensus 61 ----------------------------~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~ 112 (257)
T 1b6u_A 61 ----------------------------KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSA 112 (257)
T ss_dssp ----------------------------EEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEEC
T ss_pred ----------------------------eEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEc
Confidence 123667777778888888887431 2234556677764 344443
Q ss_pred cCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
. + ...+.+|++++|.|.+.+.+ +.+.|++ +|..+.
T Consensus 113 ~--p-~~~V~~G~~vtL~C~~~~~~-~~~~w~k-~g~~~~ 147 (257)
T 1b6u_A 113 Q--P-GPTVLAGESVTLSCSSRSSY-DMYHLSR-EGEAHE 147 (257)
T ss_dssp S--S-CTTCBTTCEEEEEEECSSCC-SEEEEEE-TTSSCE
T ss_pred c--C-CCccCCCCEEEEEEeCCCCC-cEEEEEE-CCcccC
Confidence 2 1 22478999999999998754 6899999 666554
No 186
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.49 E-value=5.7e-13 Score=100.49 Aligned_cols=137 Identities=19% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeee--ce----eeeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHH--NV----ITQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~--~~----~~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +..+ ..... .. .....|+.+..+. ...+
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYW-------MNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTV 85 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCce-------EEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEE
Confidence 5678899999999999998654 344 9999964 2222 11110 00 0112444444321 1233
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----cceeeEEEEEc----CC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----RSRQGYLQVVV----PP 162 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~p 162 (215)
+ |.|.+++.+|+|.|.|.+.+... ......|.|.. +|
T Consensus 86 s-----------------------------------L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P 130 (261)
T 2xqy_G 86 Y-----------------------------------IQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAP 130 (261)
T ss_dssp E-----------------------------------EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCC
T ss_pred E-----------------------------------EEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCC
Confidence 3 55555566666666666544210 11223455653 34
Q ss_pred eEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 163 SIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
.+...... ..+..|+.+.|.|.+.+. |.+ .+.|++ ++..+
T Consensus 131 ~v~~~~p~--~~v~~g~~v~L~C~~~g~~P~~i~v~W~k-~g~~~ 172 (261)
T 2xqy_G 131 SVYPLAPV--CGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLSS 172 (261)
T ss_dssp EEEEECCC--CC--CCSEEEEEEEEEEEBSSCCEEEEGG-GTCCT
T ss_pred eEEEeCCC--ccccCCCcEEEEEEEEeEeCCCCEEEEec-CCCcC
Confidence 44432211 235679999999999884 776 899999 66554
No 187
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.49 E-value=8.2e-14 Score=103.90 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=51.4
Q ss_pred EEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRRED 201 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~ 201 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+..... ..+..|+.+.|.|.+.+ .|.+ .+.|++ +
T Consensus 82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k-~ 157 (248)
T 3pv7_A 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCESSGFYPEAINITWEK-Q 157 (248)
T ss_dssp CCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEE-E
T ss_pred EEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEEccEECCCeEEEEEE-C
Confidence 34778888888888888888653 2344556788888888765422 23456788889999998 7988 999999 6
Q ss_pred Cc
Q psy5838 202 GA 203 (215)
Q Consensus 202 ~~ 203 (215)
|.
T Consensus 158 g~ 159 (248)
T 3pv7_A 158 TQ 159 (248)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 188
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.49 E-value=2.3e-13 Score=100.38 Aligned_cols=136 Identities=20% Similarity=0.329 Sum_probs=75.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCC----ccceeeeEEEEEEecC-Ccc---EEEeeece-e----eeCCceEEEEcC-Cce
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG----FKGLRIGWQVAWVRVD-TQT---ILSIHHNV-I----TQNPRISLTYND-HRS 89 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~----~~~~~~~~~v~W~~~~-~~~---~~~~~~~~-~----~~~~~~~~~~~~-~~~ 89 (215)
+..+.+.+|++|+|.|.+.+.+. +. +.|+|+. +.. ++...... . ....|+.+..+. ...
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 79 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVG-------VSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDM 79 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCE-------EEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTE
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCcee-------EEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCe
Confidence 45678899999999999987543 44 9999853 221 11111000 0 012344443321 122
Q ss_pred EEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----------cceeeEEEEE
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----------RSRQGYLQVV 159 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----------~~~~~~l~v~ 159 (215)
..|.|.+++.+|+|.|.|.+.+... ....+.|.|.
T Consensus 80 -----------------------------------~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~ 124 (228)
T 3bae_H 80 -----------------------------------VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVS 124 (228)
T ss_dssp -----------------------------------EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEEC
T ss_pred -----------------------------------EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEec
Confidence 3455666666666666666643210 1122456665
Q ss_pred c----CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy5838 160 V----PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGAN 204 (215)
Q Consensus 160 ~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 204 (215)
. +|.+..... ...+.+|+.+.|.|.+.+. |.+ .+.|++ ++..
T Consensus 125 ~~~~~~P~i~~~~~--~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~-~~~~ 172 (228)
T 3bae_H 125 SAKTTAPSVYPLAP--VCGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLS 172 (228)
T ss_dssp SCCCBCCEEEEECC-------CCSEEEEEEEEEEEBSSCCEEEEGG-GTCC
T ss_pred CCCCCCCEEEEecc--cccccCCCCEEEEEEEccEeCCCEEEEEee-CCcc
Confidence 2 444443211 2235689999999999885 877 899999 5554
No 189
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.49 E-value=4.6e-13 Score=101.18 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=32.2
Q ss_pred cccccCCCcccCCCCceEEEeCCcEEEEEEeeccC-----CccceeeeEEEEEEecC
Q psy5838 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLK-----GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-----~~~~~~~~~~v~W~~~~ 62 (215)
.......+.+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+.
T Consensus 9 ~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~k~~ 58 (268)
T 1x9q_A 9 DDDKASDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTY-------LRWYLQK 58 (268)
T ss_dssp -----CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBC-------EEEEEEC
T ss_pred CCCccccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCce-------EEEEEEC
Confidence 33444456677778888999999999999998765 244 9999864
No 190
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=104.29 Aligned_cols=129 Identities=24% Similarity=0.429 Sum_probs=88.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.+...+....+.+|+++.|.|.+.+.+.+. +.|++++ ..+.. ....++.... .+.|.|.
T Consensus 97 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-------v~W~~~~-~~~~~------~~~~~~~~~~----~~~L~i~ 158 (291)
T 2wim_A 97 QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHN-EEVTT------ISDNRFAMLA----NNNLQIL 158 (291)
T ss_dssp CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCE-------EEEECC-----CB------CCCSSEEECT----TSCEEET
T ss_pred CCcceEeCCCChhhcCCCCEEEEEEEccCCCCE-------EEEEECC-ccccc------cCCceEEEcc----CCCEEEE
Confidence 356677777788899999999999999877776 9999954 33211 1123333322 2379999
Q ss_pred cceecCCEEEEEEccC----------------------------------------------CCceEEEEccC-------
Q psy5838 96 NVQESDRGWYMCQVNT----------------------------------------------NPRISLTYNDH------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~----------------------------------------------~~~~~~~~~~~------- 122 (215)
+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 159 ~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~ 238 (291)
T 2wim_A 159 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238 (291)
T ss_dssp TCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred ecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence 9999999999998652 34455666321
Q ss_pred -------CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 123 -------RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 123 -------~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
....|.|.+++.+|+|.|+|.+.+ .+.....+.+.|..++
T Consensus 239 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp TTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred ccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 235699999999999999999976 4555666677776554
No 191
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.48 E-value=2.5e-13 Score=86.17 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=55.8
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|..++.++.+.+|++++|.|.+.+++ +. +.|+| ++..+ ..+.++.+..++ ....|.|
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~~~-~~-------v~W~k-~g~~i--------~~~~~~~i~~~g-~~~~L~I 64 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSEPD-VH-------GQWKL-KGQPL--------AASPDCEIIEDG-KKHILIL 64 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESSSS-CC-------CEEEE-TTEEC--------CCBTTEEEEEET-TEEEEEE
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECCCC-Ce-------EEEEE-CCEEC--------cCCCCEEEEEEC-CEEEEEE
Confidence 3468899999999999999999999998644 55 99999 55543 234455555433 3456777
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|+|.|.+
T Consensus 65 ~~v~~~D~G~Y~C~a~n 81 (93)
T 1waa_A 65 HNCQLGMTGEVSFQAAN 81 (93)
T ss_dssp CSCCGGGCEEEEEEETT
T ss_pred CCCChhhCEEEEEEECC
Confidence 77776666666666654
No 192
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.48 E-value=7.1e-13 Score=98.87 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=81.4
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..+|.|...+.. .+.+|++|+|.|...+. ... +.|+| ++..+.... . +. ......+
T Consensus 5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~~-~~~-------~~w~k-~g~~~~~~~------~-~~---~~~~~~~---- 60 (242)
T 1p6f_A 5 LPKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVE-------YQLHF-EGSLFAVDR------P-KP---PERINKV---- 60 (242)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEECCTT-CCE-------EEEEE-TTEEEEEEC------C-SS---CTTCCEE----
T ss_pred CCCCEEEeeCCC-ccCCCCcEEEEEeeCCC-CcE-------EEEEE-CCCcccccc------c-cc---cCCccee----
Confidence 356777776666 88999999999998653 233 88999 444332100 0 00 0001122
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC---CCcceeeEEEEEc---CCeEEecC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD---PMRSRQGYLQVVV---PPSIIDKD 168 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~---~p~~~~~~ 168 (215)
.|.|.+++.+|+|.|+|.+.+. ...+..+.|.|.. +|.+...
T Consensus 61 -------------------------------~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~- 108 (242)
T 1p6f_A 61 -------------------------------KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH- 108 (242)
T ss_dssp -------------------------------EEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEE-
T ss_pred -------------------------------EEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEcc-
Confidence 3556666666777777776432 2234456666663 4555432
Q ss_pred CCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 169 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+ ...+.+|++++|.|.+.+. .+.+.|++ +|..+.
T Consensus 109 -p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k-~g~~~~ 142 (242)
T 1p6f_A 109 -P-GPEVISGEKVTFYCRLDTA-TSMFLLLK-EGRSSH 142 (242)
T ss_dssp -S-CSEEETTCEEEEEEECTTS-CSEEEEEE-CSSSCE
T ss_pred -C-CCccCCCCcEEEEEecCCC-CCEEEEEE-CCCccC
Confidence 1 2357899999999999765 46899999 666543
No 193
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=98.08 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.4
Q ss_pred ceeeecCCcEEEEEEecccC--CCeEEEEeC
Q psy5838 172 DLVVREQANVTLNCKAQGYP--EPYVMWRRE 200 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~ 200 (215)
...+.+|+++.|.|.+.+.| .+.+.|++.
T Consensus 143 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~ 173 (256)
T 3ux9_B 143 GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQ 173 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred CeEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence 34578999999999998876 678999984
No 194
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.48 E-value=1.3e-13 Score=101.76 Aligned_cols=143 Identities=22% Similarity=0.287 Sum_probs=81.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccC-Cc-cceeeeEEEEEEecC-CccE-EEeee-cee--eeCCceEEEEcCCce
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLK-GF-KGLRIGWQVAWVRVD-TQTI-LSIHH-NVI--TQNPRISLTYNDHRS 89 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~-~~~~~~~~v~W~~~~-~~~~-~~~~~-~~~--~~~~~~~~~~~~~~~ 89 (215)
.+.+.. +..+.+.+|++++|.|.+.+.+ .+ . +.|+|+. +..+ ..... ... ....|+.....
T Consensus 20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---- 87 (234)
T 2j6e_L 20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNY-------VYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS---- 87 (234)
T ss_dssp CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSC-------CEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE----
T ss_pred ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCe-------EEEEEecCCCCcEEEEECccccCCCccccEEEEec----
Confidence 344555 6788899999999999998743 33 4 8999863 2221 11100 000 01123322211
Q ss_pred EEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC----cceeeEEEEE----cC
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM----RSRQGYLQVV----VP 161 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~ 161 (215)
.....|.|.+++.+|+|.|.|.+.+... ......+.|. .+
T Consensus 88 --------------------------------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~ 135 (234)
T 2j6e_L 88 --------------------------------GTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAA 135 (234)
T ss_dssp --------------------------------TTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCC
T ss_pred --------------------------------CCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCC
Confidence 1223577777777888888888765332 1122334442 23
Q ss_pred CeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCcccc
Q psy5838 162 PSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLS 206 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~ 206 (215)
|.+..... ......|+.+.|.|.+.+. |+ +.+.|++ ||..+.
T Consensus 136 p~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~ 179 (234)
T 2j6e_L 136 PSVTLFPP--SSEELQANKATLVCLISDFFPGAVTVAWKA-DGAPVK 179 (234)
T ss_dssp CCCCEECC--CHHHHTTSCCCEEECCCBCSSCCCEEEEEE-TTEECC
T ss_pred CcccccCC--ChhHhcCCceEEEEEEEEEcCCceEEEEEE-CCEECC
Confidence 44433211 1123358899999999985 44 3899999 777664
No 195
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=1.6e-12 Score=85.41 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=70.1
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+|+ +..+ ....++.+....
T Consensus 4 ~~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------i~W~k~-~~~~--------~~~~~~~~~~~~------- 60 (114)
T 2cqv_A 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPIT-------CTWMKF-RKQI--------QESEHMKVENSE------- 60 (114)
T ss_dssp CCCCCEESCCCCSEEEETTCCEEEEEEEESSSSCE-------EEEEES-SSBC--------CCSSSEEEEECS-------
T ss_pred CCCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCE-------EEEEEC-CEEC--------cCCCCEEEEEcC-------
Confidence 34578899999999999999999999999988887 999995 4432 122344333221
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCeE
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPSI 164 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~~ 164 (215)
....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|..
T Consensus 61 -----------------------------~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 61 -----------------------------NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103 (114)
T ss_dssp -----------------------------SEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSC
T ss_pred -----------------------------CEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCC
Confidence 123467888888888888898865 344555667888766543
No 196
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.48 E-value=9e-13 Score=85.52 Aligned_cols=103 Identities=27% Similarity=0.424 Sum_probs=63.3
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.|...+..+.+.+|++++|.|.+.+.+.+. +.|++.+...+ .........+.|+.+.......
T Consensus 6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~------- 70 (108)
T 3m45_A 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS-------LQWSNPAQQTL-YFDDKKALRDNRIELVRASWHE------- 70 (108)
T ss_dssp --CCCEECCCEEEETTSCEEEEEEESSCSSCC-------EEEECTTCCEE-EETTEECSCCTTEEEEEESSSE-------
T ss_pred CCCccccCCeeEEEeCCcEEEEeEEcCCCccE-------EEEEcCCCceE-EEcCCcccccCcEEEeecCCCc-------
Confidence 56777778899999999999999999877666 99999544322 2221111223344443322222
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|
T Consensus 71 ----------------------------~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 71 ----------------------------LSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108 (108)
T ss_dssp ----------------------------EEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred ----------------------------EEEEECCCChhHCeEEEEEEEcCCCcEEEEEEEEEcCC
Confidence 34666667777777777777554444445556665544
No 197
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.47 E-value=2e-13 Score=103.86 Aligned_cols=126 Identities=21% Similarity=0.372 Sum_probs=88.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.+...+....+.+|+++.|.|.+.+.+.+. +.|++++..... ..+.++... ..+.|.|.
T Consensus 99 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-------v~W~~~~~~~~~-------~~~~~~~~~----~~~~L~i~ 160 (291)
T 1qz1_A 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT-------IIWKHKGRDVIL-------KKDVRFIVL----SNNYLQIR 160 (291)
T ss_dssp CCSEEEECCSSEEEETTSCEEECCEEECSSCCE-------EEEEETTSCSST-------TCCTTEEEC----TTSCEEET
T ss_pred ccccccCCCCcccccCCCeEEEEEEeccCCCCE-------EEEEECCEEccc-------CCCceEEEc----cCCcEEEc
Confidence 356677777888899999999999999887776 999995433210 112232222 22479999
Q ss_pred cceecCCEEEEEEccC----------------------------------------------CCceEEEEccC-------
Q psy5838 96 NVQESDRGWYMCQVNT----------------------------------------------NPRISLTYNDH------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~----------------------------------------------~~~~~~~~~~~------- 122 (215)
+++.+|+|.|+|.+.+ .|.+.+.|...
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~ 240 (291)
T 1qz1_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240 (291)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred cCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence 9999999999998752 24445555211
Q ss_pred -----------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 123 -----------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 123 -----------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.|.|.
T Consensus 241 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp --CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 1246999999999999999999764 444555566664
No 198
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.47 E-value=1.7e-12 Score=96.03 Aligned_cols=137 Identities=17% Similarity=0.350 Sum_probs=73.9
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Ccc---EEEeeece---e--eeCCceEEEEcC-CceEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQT---ILSIHHNV---I--TQNPRISLTYND-HRSWFL 92 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~---~--~~~~~~~~~~~~-~~~~~l 92 (215)
..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. ++...... . ...+|+.+..+. ...+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~-- 78 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYY-------WSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQF-- 78 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCC-------EEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEE--
T ss_pred CCEEEeCCCcEEEEEEEccccCCCce-------EEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEE--
Confidence 457889999999999998653 334 9999964 221 11111000 0 012344443321 1223
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec--C--C---CcceeeEEEEEc----C
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT--D--P---MRSRQGYLQVVV----P 161 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~--~--~---~~~~~~~l~v~~----~ 161 (215)
.|.|.+++.+|+|.|.|.+.. . . .......|.|.. +
T Consensus 79 ---------------------------------~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~ 125 (232)
T 1dn0_B 79 ---------------------------------SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASA 125 (232)
T ss_dssp ---------------------------------EEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBC
T ss_pred ---------------------------------EEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCC
Confidence 455666666666666666642 1 0 011233566654 2
Q ss_pred CeEEecCCCcceeeecC-CcEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy5838 162 PSIIDKDTSTDLVVREQ-ANVTLNCKAQGY-PEP-YVMWRREDGANL 205 (215)
Q Consensus 162 p~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~i~W~~~~~~~~ 205 (215)
|.+.... + ...+..| +.+.|.|.+.+. |.+ .+.|++.||..+
T Consensus 126 P~v~~~~-p-~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l 170 (232)
T 1dn0_B 126 PTLFPLV-S-CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI 170 (232)
T ss_dssp CEEEEEE-C-C------CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred CceEEec-c-ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCce
Confidence 4444321 1 1124478 999999999885 876 899999556654
No 199
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=88.47 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=73.5
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.....|.|...+....+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++....++
T Consensus 4 ~~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~-------i~W~k~-g~~~~-------~~~~~~~~~~~~------ 62 (118)
T 2eo9_A 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPT-------ILWRKD-GVLVS-------TQDSRIKQLENG------ 62 (118)
T ss_dssp SCCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCE-------EEEEES-SSBCC-------TTSTTEEEEETT------
T ss_pred CCCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCE-------EEEEEC-CEECc-------CCCCeEEEccCC------
Confidence 345578898889999999999999999999888776 999994 44321 112333332211
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCc
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTST 171 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~ 171 (215)
.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.......+.
T Consensus 63 ---------------------------------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p~~~~~~~ 109 (118)
T 2eo9_A 63 ---------------------------------VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109 (118)
T ss_dssp ---------------------------------EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCCCCCCCCC
T ss_pred ---------------------------------EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCCccCCCCC
Confidence 3667777778888888888653 444455667777666544333344
Q ss_pred ceeeecC
Q psy5838 172 DLVVREQ 178 (215)
Q Consensus 172 ~~~~~~g 178 (215)
+..+.+|
T Consensus 110 ~~~~~~G 116 (118)
T 2eo9_A 110 DPNLIPS 116 (118)
T ss_dssp CCCCCCC
T ss_pred CCccCCC
Confidence 4444444
No 200
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.44 E-value=8.9e-13 Score=88.11 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=64.8
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
+...+..+.+.+|++++|.|.+.+.+.+. +.|++.++..+... ......+.|+.+....
T Consensus 4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~-------v~W~~~~~~~~~~~-~~~~~~~~r~~~~~~~------------- 62 (124)
T 3rbg_A 4 LTNHTETITVEEGQTLTLKCVTSLRKNSS-------LQWLTPSGFTIFLN-EYPVLKNSKYQLLHHS------------- 62 (124)
T ss_dssp CCCSEEEEEEETTSCEEEEEECCCCTTCE-------EEEECTTSCEEEET-TEECSCSSCCEEEEEE-------------
T ss_pred ccCCCccEEEcCCCCEEEEeEEeccCCCE-------EEEECCCCeEEEEe-ccccccCCcEEEEeCC-------------
Confidence 45556788999999999999999877776 99998555433211 1111123333332211
Q ss_pred cCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecC
Q psy5838 100 SDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQ 178 (215)
Q Consensus 100 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g 178 (215)
.....|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.......+......+|
T Consensus 63 ----------------------~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~l~V~~~P~~~~~~~P~~~~~~~~ 119 (124)
T 3rbg_A 63 ----------------------ANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEH 119 (124)
T ss_dssp ----------------------TTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEECC-----------------
T ss_pred ----------------------CCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEEEEEEeCCCCCcccccCccccccc
Confidence 122347788888888888888886655556667788888776543333333333333
No 201
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.44 E-value=1.4e-12 Score=97.81 Aligned_cols=136 Identities=22% Similarity=0.474 Sum_probs=75.3
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-ccE--E-Eeeec------eeeeCCceEEEEcCCceEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QTI--L-SIHHN------VITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~~--~-~~~~~------~~~~~~~~~~~~~~~~~~~ 91 (215)
+..+.+.+|++|+|.|.+.+.. ... +.|+|+.. ... + ..... .....+|+.+..+.
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----- 74 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFA-------MSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN----- 74 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG-----
T ss_pred CCCEEECCCCcEEEEEEeeCccccCce-------EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC-----
Confidence 3467889999999999997632 233 89998642 211 1 11000 00112344333221
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-----CcceeeEEEEE----cCC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-----MRSRQGYLQVV----VPP 162 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~----~~p 162 (215)
......|.|.+++.+|+|.|.|.+.+.. .......+.|. .+|
T Consensus 75 -----------------------------~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P 125 (253)
T 3liz_H 75 -----------------------------AKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPP 125 (253)
T ss_dssp -----------------------------GGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCC
T ss_pred -----------------------------CCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCC
Confidence 0123446667777777777777764321 11223456664 345
Q ss_pred eEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEEeCCCc
Q psy5838 163 SIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRREDGA 203 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~~~~~~ 203 (215)
.+... .....+..|+.+.|.|.+.+ .|.+ .+.|++ ++.
T Consensus 126 ~i~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-~~~ 165 (253)
T 3liz_H 126 SVYPL--APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSL 165 (253)
T ss_dssp EEEEE--CC------CCEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred eEEEe--cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe-CCe
Confidence 54432 12223557999999999988 6766 899999 665
No 202
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.44 E-value=1.2e-12 Score=99.74 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=82.7
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
|.+...+....+.+|+++.|.|.+.++..+. +.|++.++..+. ...++..... ..|.|.++
T Consensus 92 ~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~-------v~W~~~~g~~l~--------~~~~~~~~~~----~~L~i~~v 152 (290)
T 2o26_X 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQ-------YSLIECDGKSLP--------TDLTFVPNPK----AGITIKNV 152 (290)
T ss_dssp SCCBCCCCCEEEETTSCEEECCCBSCCSCEE-------EEEEETTSCCCC--------TTCEEEEETT----TEEEEESC
T ss_pred CcccccccceEEecCCeEEEeCcCCCCCCce-------EEEEeCCCcCCC--------CCCceeeCCC----CCEEEecc
Confidence 3333556678889999999999998633255 999665665441 2233333222 37999999
Q ss_pred eecCCE-EEEEEccC-----------------------------------------------CCceE-EEEc--cCC---
Q psy5838 98 QESDRG-WYMCQVNT-----------------------------------------------NPRIS-LTYN--DHR--- 123 (215)
Q Consensus 98 ~~~d~G-~Y~C~~~~-----------------------------------------------~~~~~-~~~~--~~~--- 123 (215)
+.+|+| .|+|.+.+ .|.+. +.|. ...
T Consensus 153 ~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~ 232 (290)
T 2o26_X 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQH 232 (290)
T ss_dssp CGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEE
T ss_pred cHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCcc
Confidence 999999 99998762 22332 5552 111
Q ss_pred ------------------eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCC
Q psy5838 124 ------------------SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPP 162 (215)
Q Consensus 124 ------------------~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p 162 (215)
...|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 233 IAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp CCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred ceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 345999999999999999999763 444555556665443
No 203
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.43 E-value=1.1e-12 Score=98.61 Aligned_cols=136 Identities=18% Similarity=0.376 Sum_probs=70.1
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE---EEeee--ce----eeeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI---LSIHH--NV----ITQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~---~~~~~--~~----~~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +..+ +.... .. ....+|+.+..+. ...+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYA-------MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTL 79 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCC-------EEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEE
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCce-------EEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEE
Confidence 3467889999999999998653 334 9999964 2221 11110 00 0112444443321 1233
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCC--------------cceeeEE
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPM--------------RSRQGYL 156 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l 156 (215)
.|.|.+++.+|+|.|.|.+.+... ......|
T Consensus 80 -----------------------------------sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L 124 (257)
T 3bn9_D 80 -----------------------------------YLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMV 124 (257)
T ss_dssp -----------------------------------EEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEE
T ss_pred -----------------------------------EEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEE
Confidence 455666666666666666643211 0122356
Q ss_pred EEEc----CCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy5838 157 QVVV----PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRREDGAN 204 (215)
Q Consensus 157 ~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~~~~ 204 (215)
.|.. +|.+... .+...+..|+.+.|.|.+.+. |.+ .+.|++ ++..
T Consensus 125 ~V~~~~~~~P~v~~~--~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k-~g~~ 175 (257)
T 3bn9_D 125 TVSSASTKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GALT 175 (257)
T ss_dssp EECSSCCBCCEECCC--CC-----------CCCEEEEEBSSCCEEEETT-TTCC
T ss_pred EecCCCCcCCcEEEe--cCcccccCCCcEEEEEEEeeEECCCcEEEEee-CCCc
Confidence 6653 3444432 112235689999999999885 877 899999 6654
No 204
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.43 E-value=2.8e-13 Score=99.36 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=49.2
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCcc-eeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMRS-RQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~ 198 (215)
.|.|.+++.+|+|.|+|.+.+..... ....+ .+..+|.+........ ...|+.+.|.|.+.| +|.+ .+.|+
T Consensus 77 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~ 154 (218)
T 2rgs_A 77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE--QLSRKDVSLTCLVVGFNPGDISVEWT 154 (218)
T ss_dssp EEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG--GTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH--HhcCCceEEEEEEEeeeCCCcEEEEE
Confidence 46677777777888888876532211 11111 3345676654322221 235999999999998 6765 89999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ +|..+.
T Consensus 155 k-~g~~~~ 161 (218)
T 2rgs_A 155 S-NGHTEE 161 (218)
T ss_dssp E-TTEEEC
T ss_pred E-CCEecc
Confidence 9 776553
No 205
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.43 E-value=6.1e-13 Score=85.09 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+|.|...+....+.+|++++|.|.+.+.+.+. +.|++++
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~k~g 43 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-------CEWYKNG 43 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEETT
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCE-------EEEEECC
Confidence 468888888899999999999999999888887 9999943
No 206
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.43 E-value=9.6e-12 Score=90.48 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.+.. +. +.|+|+.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~-------v~W~r~~ 38 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RS-------VQWFRQN 38 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SE-------EEEEEEC
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eE-------EEEEEeC
Confidence 44556788999999999999998643 23 9999964
No 207
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.42 E-value=5.1e-13 Score=103.70 Aligned_cols=121 Identities=21% Similarity=0.370 Sum_probs=85.2
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEE
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWY 105 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 105 (215)
...+.+|+++.|.|.+.+.+.+. +.|+++ +..+. ...++.........+.|.|.+++.+|+|.|
T Consensus 132 ~~~v~~g~~v~l~C~~~g~p~~~-------v~W~~~-~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 195 (334)
T 1ry7_B 132 LLAVPAANTVRFRCPAAGNPTPS-------ISWLKN-GREFR--------GEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195 (334)
T ss_dssp EEEEETTCCEEEECCCCCSSCCE-------EECCBT-TBCCC--------TTSSTTCCCCCTTTTEEEECSCCGGGCCCE
T ss_pred eEEecCCCcEEEEEEccCCCCCe-------EEEEEC-CEECc--------ccccccceecccceEEEEECCCCcccCEEE
Confidence 46788999999999999887776 999995 44321 111111111112445899999999999999
Q ss_pred EEEccC-----------------------------------------------CCceEEEEccC------------C---
Q psy5838 106 MCQVNT-----------------------------------------------NPRISLTYNDH------------R--- 123 (215)
Q Consensus 106 ~C~~~~-----------------------------------------------~~~~~~~~~~~------------~--- 123 (215)
+|.+.+ .|.+.+.|... .
T Consensus 196 ~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~ 275 (334)
T 1ry7_B 196 TCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV 275 (334)
T ss_dssp EEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCC
T ss_pred EEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeE
Confidence 998752 45566777430 0
Q ss_pred --------------eEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 124 --------------SWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 124 --------------~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|...|
T Consensus 276 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 276 TVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp CCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred EEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 02699999999999999999976 4556666778777544
No 208
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.42 E-value=1.2e-12 Score=106.05 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=42.6
Q ss_pred CeEEEEEeecCCCc-ceeeEEE----EEcCCeEEecCCCcceeeecCCcEEEEEEecccCCC--eEEEEeCCCcccc
Q psy5838 137 RGWYMCQVNTDPMR-SRQGYLQ----VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP--YVMWRREDGANLS 206 (215)
Q Consensus 137 ~G~Y~C~~~~~~~~-~~~~~l~----v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~ 206 (215)
+|.|+|.+.+.... .....+. +..+|.+...... ...+..|+ +.|.|.+.|.|++ .+.|++ ||..+.
T Consensus 326 ~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k-~g~~l~ 399 (457)
T 1hzh_H 326 GKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS-RDELTKNQ-VSLTCLVKGFYPSDIAVEWES-NGQPEN 399 (457)
T ss_dssp TCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCC-GGGGGSSE-EEEEEEEEEEBSSCCEEEEEE-TTEECC
T ss_pred CCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCC-ccccCCCc-EEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 89999999754322 2222232 3456776654322 22244555 9999999996443 899999 787764
No 209
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-12 Score=85.44 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=68.0
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.....|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++.+.......
T Consensus 11 ~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~-------v~W~k~-~~~~~-------~~~~~~~~~~~~~~~--- 72 (116)
T 2kkq_A 11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPK-------LFWKRN-NEMVQ-------FNTDRISLYQDNTGR--- 72 (116)
T ss_dssp CCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCE-------EEEEET-TEECC-------CCBTTEEEEECTTCE---
T ss_pred CCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCE-------EEEEEC-CEECc-------CCCCeEEEEeCCCCe---
Confidence 445579999999999999999999999999888776 999994 33221 113444444332111
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCe
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPS 163 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~ 163 (215)
..|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.
T Consensus 73 --------------------------------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 73 --------------------------------VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp --------------------------------EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSC
T ss_pred --------------------------------EEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCC
Confidence 2366777777777888887754 33444555677766554
No 210
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.41 E-value=5e-13 Score=97.90 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=53.2
Q ss_pred EEEEEcccCCCCCeEEEEEeecC--CCcceeeEEEEEcCCeEEecCCCcceeeecCCcE-EEEEEec-ccCCCeEEEEe
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANV-TLNCKAQ-GYPEPYVMWRR 199 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~~~i~W~~ 199 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+....... . ..|+.+ .|.|.+. +.|.|.+.|++
T Consensus 78 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~--~-~~g~~~~~l~C~~~~g~P~p~v~W~k 153 (221)
T 3eow_R 78 ASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV--Q-LTGEPVPMARCVSTGGRPPAQITWHS 153 (221)
T ss_dssp CEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECC--C-CCSSSCCEEEEEEESCSSCCCEEEEC
T ss_pred ceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCc--c-cCCceEEEEEEECCCccCCCeeEEEe
Confidence 45788888889999999998653 344555667777788776432211 1 578888 5999987 78999999998
No 211
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.7e-12 Score=98.44 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCcccCCCC-ceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEc-CCceEEEE
Q psy5838 17 MPHFAEPIP-NVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 17 ~p~~~~~~~-~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 93 (215)
.|.+...+. ...+.+|+++.|.|.+. +.+.+. +.|++ ++..+ ....++.+... ......|.
T Consensus 106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~~-~~~~i--------~~~~~~~~~~~~~~~~~~L~ 169 (312)
T 2y23_A 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK-------VNYIF-NEKEI--------FEGPKYKMHIDRNTGIIEMF 169 (312)
T ss_dssp SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCE-------EEEEE-TTEEE--------CSSSSCEEEEETTTTEEEEE
T ss_pred CCccccccCCceEEeeCCCEEEEEEEEeCCCCCE-------EEEEE-CCEEC--------eeCCcEEEEEccCCCEEEEE
Confidence 344444333 77888999999999998 677776 99999 44443 22345555443 23456799
Q ss_pred EccceecCCEEEEEEccC------------------------------------------------------------CC
Q psy5838 94 IKNVQESDRGWYMCQVNT------------------------------------------------------------NP 113 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~------------------------------------------------------------~~ 113 (215)
|.+++.+|+|.|+|.+.+ .|
T Consensus 170 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p 249 (312)
T 2y23_A 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK 249 (312)
T ss_dssp ESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCC
T ss_pred EccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCC
Confidence 999999999999995421 23
Q ss_pred ce-EEEEcc--------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEE
Q psy5838 114 RI-SLTYND--------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQ 157 (215)
Q Consensus 114 ~~-~~~~~~--------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 157 (215)
.+ .+.|.. .....|.|.+++.+|+|.|+|.+.+. +.....+.|.
T Consensus 250 ~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 309 (312)
T 2y23_A 250 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309 (312)
T ss_dssp SSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEEC
T ss_pred CCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEE
Confidence 33 566622 12357999999999999999999763 4444444443
No 212
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=82.52 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=51.9
Q ss_pred CCcccCCCCceEE--EeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 17 MPHFAEPIPNVTV--TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 17 ~p~~~~~~~~~~~--~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
+|.|..++..+.+ .+|+++.|.|.+.+ +.+. +.|+| ++..+ ..+.++.+..++ ....|.|
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~-------v~W~k-~g~~i--------~~~~~~~i~~~~-~~~~L~I 65 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAP-------VRWYK-DGQEV--------EESDFVVLENEG-PHRRLVL 65 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSC-------CEEEE-TTSCC--------CCCSSCEEEEET-TEEEEEE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcE-------EEEEE-CCEEe--------eeeeeeeEEecC-CeEEEEe
Confidence 3456666665544 57999999999976 4555 99999 55544 234555555443 4456777
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|+|.|.+
T Consensus 66 ~~v~~~D~G~Y~C~a~n 82 (91)
T 2lvc_A 66 PATQPSDGGEFQCVAGD 82 (91)
T ss_dssp SSCCGGGCSEEEEECSS
T ss_pred CCCChhhcEEEEEEEcc
Confidence 77777777777777654
No 213
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.41 E-value=5.8e-12 Score=96.36 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=26.1
Q ss_pred CcceeeecCCcEEEEEEecccCCC------eEEEEeC
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEP------YVMWRRE 200 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~------~i~W~~~ 200 (215)
+..+.+.+|+++.|.|.+.+.|.+ .+.|++.
T Consensus 166 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~ 202 (291)
T 2gki_A 166 PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQ 202 (291)
T ss_dssp CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred CCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEE
Confidence 445668899999999999988765 8999994
No 214
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.41 E-value=2.7e-12 Score=97.51 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=85.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
+...+....+.+|+++.|.|.+.+.+.+. .+.|++.++..+ ....++.... .+.|.|.+++.
T Consensus 92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~------~v~W~~~~~~~~--------~~~~~~~~~~----~~~L~i~~v~~ 153 (289)
T 3ejj_X 92 WNLLAQEVTVVEGQEAVLPCLITDPALKD------SVSLMREGGRQV--------LRKTVYFFSP----WRGFIIRKAKV 153 (289)
T ss_dssp EEESCSEEEEETTSCEEECEEESCGGGGG------SEEEEEGGGEEC--------CTTCCEEEET----TTEEEESSCCG
T ss_pred eecccceEEEecCCceEeEEEccCCCcce------EEEEEecCCeec--------CCCccEEECC----CCCEEEeeccc
Confidence 45556788899999999999998755442 188988555433 2233444332 23799999999
Q ss_pred cCCEEEEEEcc-C-----------------------------------------------CCceEEEEccC---------
Q psy5838 100 SDRGWYMCQVN-T-----------------------------------------------NPRISLTYNDH--------- 122 (215)
Q Consensus 100 ~d~G~Y~C~~~-~-----------------------------------------------~~~~~~~~~~~--------- 122 (215)
+|+|.|+|.+. + .|.+.+.|...
T Consensus 154 ~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 233 (289)
T 3ejj_X 154 LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN 233 (289)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEE
T ss_pred ccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCC
Confidence 99999999976 1 24455666221
Q ss_pred ---------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 123 ---------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 123 ---------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.|.+.
T Consensus 234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~ 280 (289)
T 3ejj_X 234 SDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280 (289)
T ss_dssp EEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred cccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEE
Confidence 1456999999999999999999763 444444555543
No 215
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.40 E-value=4.9e-12 Score=96.24 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=27.7
Q ss_pred cccCCCCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~ 62 (215)
.+.. +..+.+.+|++|+|.|.+.+. +.+. +.|+|..
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~ 40 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFA-------ISWVRQA 40 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSC-------EEECCBC
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeE-------EEEEEeC
Confidence 3455 678899999999999999874 3344 9999853
No 216
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.40 E-value=7.5e-12 Score=83.37 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=68.0
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeecc---CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNL---KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSW 90 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~---~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (215)
.+..|.|...|..+.+.+|++++|.|.+.+. +.|. |.|||+....+ .. ....++.+....
T Consensus 4 ~~~~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~-------V~W~Kgk~~~~-~~-----~~~~~~~~~~~~---- 66 (126)
T 2dav_A 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPT-------IKWFKGKWMDL-AS-----KAGKHLQLKETF---- 66 (126)
T ss_dssp CCSSCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCE-------EEEEESSSCCH-HH-----HTTSSEEEEEEE----
T ss_pred CCcccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCc-------EEEeeCcCccc-CC-----CCCceEEEcccc----
Confidence 4556889999999999999999999999874 5666 99999421110 00 001223222110
Q ss_pred EEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEc-CC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVV-PP 162 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~-~p 162 (215)
.+. .+ . ....|+|.+++..|+|.|+|++.+ .+.....+.|.|.+ ++
T Consensus 67 ---~~~---~~--~------------------~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 67 ---ERH---SR--V------------------YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114 (126)
T ss_dssp ---ETT---TT--E------------------EEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred ---ccc---cc--c------------------ceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence 000 00 0 113588888999999999999866 34556677888887 54
No 217
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.40 E-value=5.7e-14 Score=113.19 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=51.2
Q ss_pred EEEEcccCCCCCeEEEEEeecCCC-c--ceeeEE--EEEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPM-R--SRQGYL--QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~l--~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~ 198 (215)
.|.|..++.+|+|.|+|.+.+... . ...+.+ .+..+|.+........ ...|+.+.|.|.+.|. |++ .+.|+
T Consensus 296 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~~~~~~L~C~~~g~~P~~~~v~W~ 373 (434)
T 1igy_B 296 ALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKE--QMAKDKVSLTCMITDFFPEDITVEWQ 373 (434)
T ss_dssp CEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSS--SSSSSEEEEEEEEEEEBCSCEEEEEE
T ss_pred EEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHH--HhcCCcEEEEEEEEeeECCCeEEEEE
Confidence 477888888899999999975322 1 222222 3445676654422221 2357789999999985 543 89999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ ||..+.
T Consensus 374 k-~g~~l~ 380 (434)
T 1igy_B 374 S-DGQAPE 380 (434)
T ss_dssp E-TTSCCS
T ss_pred E-CCEecC
Confidence 9 777664
No 218
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.39 E-value=3.3e-13 Score=98.15 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=49.1
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCc-ceeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMR-SRQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~ 198 (215)
.|.|.+++.+|+|.|+|.+.+.... .....+ .+..+|.+........ ...|+.+.|.|.+.|+ |++ .+.|+
T Consensus 69 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~ 146 (207)
T 2vol_A 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE--QMAKDKVSLTCMITDFFPEDITVEWE 146 (207)
T ss_dssp EEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG--GGSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH--HhcCCceEEEEEEeeEECCCCEEEEE
Confidence 3667777777777888877653221 111222 3445777655432222 2359999999999984 553 89999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ ||..+.
T Consensus 147 k-~g~~l~ 153 (207)
T 2vol_A 147 S-NGQPAE 153 (207)
T ss_dssp E-TTEECS
T ss_pred E-CCEecc
Confidence 9 777654
No 219
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.39 E-value=1.9e-12 Score=83.90 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=36.4
Q ss_pred ccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
......|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++
T Consensus 8 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------i~W~~~ 50 (107)
T 3irg_B 8 GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPV-------VVWEKG 50 (107)
T ss_dssp --CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEET
T ss_pred CCCCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCE-------EEEEEC
Confidence 3445578899889999999999999999999888877 999994
No 220
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.39 E-value=3.9e-12 Score=90.72 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=47.3
Q ss_pred EEEEcccCCCCCeEEEEEeecC-CCc--ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCC
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD-PMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~ 202 (215)
+|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|..+... +.. ...+..+.|.|.+.+.|.+.+.|++ +|
T Consensus 67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~------P~i-~~~~~~v~L~C~~~~~p~~~~~W~~-~g 138 (182)
T 1hnf_A 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK------PKI-SWTCINTTLTCEVMNGTDPELNLYQ-DG 138 (182)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCC------CEE-EEETTTTEEEEECSSCSSCEEEEEE-SS
T ss_pred CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCC------CEE-EEccCcEEEEeEccCCCCCEEEEEE-CC
Confidence 3667777778888888887543 222 23445666643211 111 1134479999999998889999999 77
Q ss_pred ccc
Q psy5838 203 ANL 205 (215)
Q Consensus 203 ~~~ 205 (215)
..+
T Consensus 139 ~~l 141 (182)
T 1hnf_A 139 KHL 141 (182)
T ss_dssp CEE
T ss_pred EEC
Confidence 766
No 221
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-12 Score=81.98 Aligned_cols=96 Identities=26% Similarity=0.317 Sum_probs=65.6
Q ss_pred ccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
.....+|.|...+....+.+|++++|.|.+.+.+.+. +.|+++ +..+. ..+.++.... .
T Consensus 3 ~~~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~-------v~W~~~-~~~~~-------~~~~~~~~~~----~-- 61 (100)
T 2edj_A 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPV-------ISWLKE-GFTFP-------GRDPRATIQE----Q-- 61 (100)
T ss_dssp SSCCSSCEEEECCCCEEEESSSEEEECCEEECSSCCE-------EEEEES-SSEES-------SSCSSCEECT----T--
T ss_pred CCCCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCE-------EEEEEC-CEECC-------CCCCCEEEcC----C--
Confidence 3445678898888999999999999999999888887 999994 44321 1122222111 1
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVP 161 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~ 161 (215)
..|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+
T Consensus 62 ---------------------------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 62 ---------------------------------GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp ---------------------------------CCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred ---------------------------------CEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence 1266777888888888888865 344555666766644
No 222
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.39 E-value=4.7e-12 Score=92.32 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=60.6
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|. .+..+.+.+|+++.|.|.+.+.+.+. +.|+|+ +..+.. ....++.+.... ....|.
T Consensus 16 ~~~~P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~-------i~W~~~-g~~l~~------~~~~~~~~~~~~-~~~~L~ 79 (215)
T 3mtr_A 16 HMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSAT-------ISWFRD-GQLLPS------SNYSNIKIYNTP-SASYLE 79 (215)
T ss_dssp CCEEEEEE-CCSEEEECTTCCEEEEEEEEEESCCE-------EEEEET-TEESSC------SSSCSEEEEEET-TEEEEE
T ss_pred eecCCccc-CCceEEEECCCCEEEEEEEeecCCCE-------EEEEEC-CeECCC------CCCccEEEecCC-CeeEEE
Confidence 34467774 56678899999999999999988887 999994 443211 111344444332 467899
Q ss_pred EccceecCCEEEEEEccC
Q psy5838 94 IKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~ 111 (215)
|.+++.+|+|.|+|.+.+
T Consensus 80 i~~~~~~d~G~Y~C~a~n 97 (215)
T 3mtr_A 80 VTPDSENDFGNYNCTAVN 97 (215)
T ss_dssp ECCCSGGGCEEEEEEEEC
T ss_pred EecCChhhCeEEEEEEEE
Confidence 999999999999999874
No 223
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.38 E-value=1e-12 Score=109.52 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=82.7
Q ss_pred CCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCccEEEeeecee----eeCCceEEEEcCCceEEEEEccce
Q psy5838 24 IPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI----TQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
.+.+.+.+|++++|.|.+ .+.+.+. +.|++++...... ..... ....|..+..
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~-------v~W~k~~~~~~~~-~~~~~~~~~~~~~r~~~~~-------------- 430 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQR-------LEWKLNTGRTEAW-KVLSPQGGGPWDSVARVLP-------------- 430 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCE-------EEEEEEETTSSSC-EECCSCCSSGGGGTSEECT--------------
T ss_pred hcccceecCCcEEEeeeecCCCCCce-------EEEEEcCCeeEEE-EecccCCCCCcCCcEEEcC--------------
Confidence 346788999999999999 5666665 9999964321110 00000 0011211111
Q ss_pred ecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-Cc-ceeeEEEEEcCCeEEecCCCcceeee
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MR-SRQGYLQVVVPPSIIDKDTSTDLVVR 176 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~l~v~~~p~~~~~~~~~~~~~~ 176 (215)
+.+|.|.+++.+|+|.|+|.+.+.. .. ...+.|.|..+|..+....... .+.
T Consensus 431 -------------------------~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~~~ 484 (581)
T 3o3u_N 431 -------------------------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSAS-ELT 484 (581)
T ss_dssp -------------------------TSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCS-EEC
T ss_pred -------------------------CceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCc-ccc
Confidence 1136677788888888888886532 22 4556788877554333222222 244
Q ss_pred cCCcE-EEEEEecc-cCCCeEEEEeCCCcccccc
Q psy5838 177 EQANV-TLNCKAQG-YPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 177 ~g~~~-~l~C~~~~-~p~~~i~W~~~~~~~~~~~ 208 (215)
.|+.. .|.|.+.+ +|.|.++|++ ||+.+...
T Consensus 485 ~~~~~~~l~C~~~~~~P~~~i~W~~-~g~~l~~~ 517 (581)
T 3o3u_N 485 AGVPNKVGTCVSEGSYPAGTLSWHL-DGKPLVPN 517 (581)
T ss_dssp TTSCEEEEEEEEEEEBSCCEEEEEE-TTEECCTT
T ss_pred cCCceeEEEEECCCCCCCCeEEEEE-CCEECCCC
Confidence 55554 66999988 6999999999 88877643
No 224
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=98.80 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=80.6
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcccee
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQE 99 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 99 (215)
...+....+.+|++++|.|.+.++.. +. +.|+++++..+. ...++... ..+.|.|.+++.
T Consensus 93 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~-------v~W~~~~~~~~~--------~~~~~~~~----~~~~L~i~~~~~ 153 (292)
T 4dkd_C 93 NVLAQEVVVFEDQDALLPCLLTDPVLEAG-------VSLVRVRGRPLM--------RHTNYSFS----PWHGFTIHRAKF 153 (292)
T ss_dssp EESCSEEEEETTSCEECCEEESSGGGGSS-------EEEEEGGGCCCC--------SSCCEECC----SSSCCEETTCCG
T ss_pred cccCCeEEEcCCCcEEEeeeCCCCCccee-------EEEEecCCCccc--------cCCccccc----CCceEEECCCCH
Confidence 44566788999999999999997432 44 999996555431 22222222 122499999999
Q ss_pred cCCEEEEEEccC------------------------------------------------CCceEEEEccC---------
Q psy5838 100 SDRGWYMCQVNT------------------------------------------------NPRISLTYNDH--------- 122 (215)
Q Consensus 100 ~d~G~Y~C~~~~------------------------------------------------~~~~~~~~~~~--------- 122 (215)
+|+|.|+|.+.+ .+.+.+.|...
T Consensus 154 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~ 233 (292)
T 4dkd_C 154 IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ 233 (292)
T ss_dssp GGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE
T ss_pred HHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc
Confidence 999999999873 11233444211
Q ss_pred ---------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcC
Q psy5838 123 ---------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVP 161 (215)
Q Consensus 123 ---------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~ 161 (215)
....|.|.+++.+|+|.|+|.+.+. +.....+.|.|...
T Consensus 234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 234 SDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp EEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred ceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 1136999999999999999999763 44455555655543
No 225
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-11 Score=81.32 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=65.6
Q ss_pred ccccccCCCcccCC---CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcC
Q psy5838 10 SSVSESLMPHFAEP---IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86 (215)
Q Consensus 10 ~~~~~~~~p~~~~~---~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (215)
...+....|.|..+ +..+.+.+|+++.|.|.+.+.+.+. +.|+++ +..+ ...++.+...+
T Consensus 14 ~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~-------i~W~k~-g~~l---------~~~~~~~~~~~ 76 (118)
T 2e7c_A 14 TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQ-------VVWTKG-GAPL---------DTSRVHVRTSD 76 (118)
T ss_dssp CCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCE-------EEEEET-TEEC---------CCSSCEEEECS
T ss_pred EEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCE-------EEEEEC-CEEC---------CCCcEEEEECC
Confidence 33344557777643 5688999999999999999998887 999994 4332 12233322211
Q ss_pred CceEEEEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
....|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 77 ------------------------------------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 77 ------------------------------------FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp ------------------------------------SEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred ------------------------------------CeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 112366777788888888888865 3444555667666554
No 226
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=84.01 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ....++.+......
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~k~-g~~~~-------~~~~~~~~~~~~~~----- 64 (110)
T 2dm2_A 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK-------IYWFKD-GKQIS-------PKSDHYTIQRDLDG----- 64 (110)
T ss_dssp CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCE-------EEEECS-SCBCC-------TTCSSEEEEECTTC-----
T ss_pred CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCE-------EEEEEC-CEECC-------CCCCeEEEEECCCc-----
Confidence 44578899889999999999999999999888776 999994 44321 11233433332111
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 65 ------------------------------~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 104 (110)
T 2dm2_A 65 ------------------------------TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104 (110)
T ss_dssp ------------------------------EEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCS
T ss_pred ------------------------------EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCC
Confidence 12367788888888888888865 3444555667776554
No 227
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=82.66 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=35.8
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
.+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~-------v~W~~~-g~~ 45 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPD-------VSWYLN-GRT 45 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCE-------EEEEET-TEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCE-------EEEEEC-CEE
Confidence 367888888899999999999999999888777 999994 443
No 228
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.37 E-value=2.6e-12 Score=82.77 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=35.9
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
...|.|...+....+.+|+++.|.|.+.+.+.+. +.|++++
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------i~W~k~~ 46 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAE-------VKWYHNG 46 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCE-------EEEEETT
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCE-------EEEEECC
Confidence 3468888888999999999999999999988887 9999943
No 229
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.37 E-value=4.1e-12 Score=82.69 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=34.8
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCC---ccceeeeEEEEEEecC
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKG---FKGLRIGWQVAWVRVD 62 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~---~~~~~~~~~v~W~~~~ 62 (215)
.+.|.|...|..+.+.+|++++|.|.+.+.+. +. +.|+|++
T Consensus 2 ~p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~-------v~W~k~~ 45 (108)
T 3cx2_A 2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPV-------VKWFKGK 45 (108)
T ss_dssp CCCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCE-------EEEEETT
T ss_pred CCccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcE-------EEEccCC
Confidence 35688999999999999999999999998776 65 9999943
No 230
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=81.75 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=50.5
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..+|.|...+....+.+|+++.|.|.+.+.+.+. +.|+++ +..+ ....++.+.... ....|.|
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~-------v~W~~~-g~~~--------~~~~~~~~~~~~-~~~~L~i 66 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-------AIWTKD-GKAI--------TQGGKYKLSEDK-GGFFLEI 66 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCE-------EEEEET-TEEC--------CSSSSEEEEEET-TEEEEEE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCE-------EEEEEC-CEEC--------cCCCCEEEEEeC-CEEEEEE
Confidence 4568888888999999999999999999888877 999994 4432 223444444322 2234444
Q ss_pred ccceecCCEEEEEEc
Q psy5838 95 KNVQESDRGWYMCQV 109 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~ 109 (215)
.+++.+|+|.|+|.+
T Consensus 67 ~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 67 HKTDTSDSGLYTCTV 81 (99)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred CCCCcccCEEEEEEE
Confidence 444444444444433
No 231
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.36 E-value=3.3e-12 Score=91.30 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=24.5
Q ss_pred eecCCcEEEEEEecccCCCeEEEEeCCCcccc
Q psy5838 175 VREQANVTLNCKAQGYPEPYVMWRREDGANLS 206 (215)
Q Consensus 175 ~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~ 206 (215)
+.+|+++.|.|.+ |.|.+.|++ ||..+.
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k-~g~~i~ 146 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLK-DGSIIS 146 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEE-TTEECC
T ss_pred cCCCCeEEEEeeC---CCCeEEEEE-CCEECc
Confidence 4589999999999 889999999 887765
No 232
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=84.01 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=60.3
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
...|.|...+..+.+.+|++++|.|.+.+.+.+ . +.|+| ++..+ ....++.+..++ ...
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~-------v~W~k-~g~~i--------~~~~r~~~~~~~-~~~--- 65 (104)
T 2eny_A 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDP-------AMWTV-GGKTV--------GSSSRFQATRQG-RKY--- 65 (104)
T ss_dssp CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSC-------BCCBS-SSSBC--------SBCSSCEEEEET-TEE---
T ss_pred cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCce-------eEEEE-CCEEC--------CCCCCEEEEEcC-CEE---
Confidence 345778888999999999999999999876543 4 88999 44443 223455444332 222
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
.|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|
T Consensus 66 --------------------------------~L~I~~v~~~D~G~Y~C~a~~---~~~~a~L~V~~~p 99 (104)
T 2eny_A 66 --------------------------------ILVVREAAPSDAGEVVFSVRG---LTSKASLIVRERS 99 (104)
T ss_dssp --------------------------------EEEECSCCTTTCSCEEEEETT---EEEEECEEEECCC
T ss_pred --------------------------------EEEECCCCHHHCEEEEEEECC---eeEEEEEEEeCCC
Confidence 355666666677777776632 2344556666555
No 233
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=80.04 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=43.1
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRG 103 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 103 (215)
...+.+.+|+++.|.|.+.+ |.+. +.|+| ++..+ ..+.++.+...+ ....|.|.+++.+|+|
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~-------v~W~k-~g~~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G 64 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGP-------VRWYK-DGERL--------ASQGRVQLEQAG-ARQVLRVQGARSGDAG 64 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTT-------CEEEE-TTEEC--------CCCSSEEEEECS-SCEEEEESSCSSTTCE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcE-------EEEEE-CCEEc--------cccccEEEeecC-CeEEEEecCCCCcccE
Confidence 35788999999999999976 5566 99999 55544 234455554443 3344555555555444
Q ss_pred EEEEEc
Q psy5838 104 WYMCQV 109 (215)
Q Consensus 104 ~Y~C~~ 109 (215)
.|+|.|
T Consensus 65 ~Y~C~a 70 (84)
T 2lu7_A 65 EYLCDA 70 (84)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 444444
No 234
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.36 E-value=8.8e-12 Score=95.98 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=84.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.+...+....+..|+.+.|.|... +.|.+. +.|+++ +..+..........++.+.. ...|.|.
T Consensus 117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~-------i~W~~~-~~~~~~~~~~~~~~~~~~~~------~s~l~i~ 182 (313)
T 4fqp_A 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ-------ITWHSD-LGGMPNTSQVPGFLSGTVTV------TSLWILV 182 (313)
T ss_dssp CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCE-------EEEEET-TCCEEEEEEEECSSTTCEEE------EEEEEEC
T ss_pred CCcceecccceEeecCceEEEEEEccCccCCcE-------EEeecC-Cccccccceeeeeccccccc------ceeeeec
Confidence 44444444555666788899999876 556666 999995 44432221111111222221 2358888
Q ss_pred cceecCCEEEEEEccC---------------------------------------------CCce-EEEEccC-------
Q psy5838 96 NVQESDRGWYMCQVNT---------------------------------------------NPRI-SLTYNDH------- 122 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~---------------------------------------------~~~~-~~~~~~~------- 122 (215)
++...|+|.|+|.|.+ .|.+ .+.|...
T Consensus 183 ~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~ 262 (313)
T 4fqp_A 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF 262 (313)
T ss_dssp CCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT
T ss_pred ccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc
Confidence 8999999999998763 2333 4556321
Q ss_pred ---CeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 123 ---RSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 123 ---~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
.+..|.|.+++.+|+|.|+|.|.+ .+.....+.|.|..+|
T Consensus 263 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp EEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 123599999999999999999976 3555666778887544
No 235
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.36 E-value=3.7e-12 Score=81.34 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+|.|...+....+.+|++++|.|.+.+.+.+. +.|++++
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~k~~ 43 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPV-------VSWLRNR 43 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCE-------EEEEETT
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCE-------EEEEECC
Confidence 367888888899999999999999999888877 9999943
No 236
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.35 E-value=1.8e-11 Score=94.06 Aligned_cols=117 Identities=18% Similarity=0.342 Sum_probs=79.3
Q ss_pred EEEeCCcEEEEEEeec----------cCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc
Q psy5838 28 TVTVGRDALLACVVDN----------LKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV 97 (215)
Q Consensus 28 ~~~~G~~v~L~C~~~~----------~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 97 (215)
.+..|+++.|.|...+ .+.+. +.|++++ ..+ ....++.....+ ....|.|.++
T Consensus 109 ~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~-------i~W~~~~-~~~--------~~~~~~~~~~~~-~~~~L~i~~~ 171 (317)
T 2y25_A 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDLK-------VNWSHNG-SAI--------RYSDRVKTGVTG-EQIWLQINEP 171 (317)
T ss_dssp HHTCBCCCEEEECSSEEEEEEEBSSCCSSCE-------EEEEESS-SBC--------CCCSSEEEEECS-SEEEEEEESC
T ss_pred ecccCCCeEEEeeccccEEEEEeccCCCCcE-------EEEEECC-EEC--------CCCCCeEEeccC-CEEEEEECcC
Confidence 3446777777777665 45665 9999954 433 223444444333 4567999999
Q ss_pred eecCCEEEEEEccC---------------------------------------------------------------CCc
Q psy5838 98 QESDRGWYMCQVNT---------------------------------------------------------------NPR 114 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~---------------------------------------------------------------~~~ 114 (215)
+.+|+|.|+|.+.+ .|.
T Consensus 172 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 251 (317)
T 2y25_A 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP 251 (317)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSC
T ss_pred CcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCC
Confidence 99999999998653 344
Q ss_pred eEEEEcc-----------------CCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcC
Q psy5838 115 ISLTYND-----------------HRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVP 161 (215)
Q Consensus 115 ~~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~ 161 (215)
+.+.|.. .....|.|.+++.+|+|.|+|.+.+. +.....+.|.|..|
T Consensus 252 p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 252 PEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp CEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 5556621 12347999999999999999999763 44555666777644
No 237
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.35 E-value=7.8e-12 Score=92.36 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=39.7
Q ss_pred EEEEEcccCCCCCeEEEEEeecC---------CCcceeeEEEEE----cCCeEEecCCCcceeeecCCcEEEEEEecccC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD---------PMRSRQGYLQVV----VPPSIIDKDTSTDLVVREQANVTLNCKAQGYP 191 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~---------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 191 (215)
..|.|.+++.+|+|.|.|.+.+. ........+.|. .+|.+... .+...+..|+.+.|.|.+.+.+
T Consensus 83 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C~~~~~~ 160 (232)
T 3qhz_H 83 VVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPL--APSSKSTSGGTAALGCLVKDYF 160 (232)
T ss_dssp EEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEE--CC-------CEEEEEEEEEEEB
T ss_pred EEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEe--cccccccCCCcEEEEEEEeeEe
Confidence 34556666666666666666432 111222345554 24444422 1222355799999999998854
Q ss_pred C-C-eEEEEeCCCc
Q psy5838 192 E-P-YVMWRREDGA 203 (215)
Q Consensus 192 ~-~-~i~W~~~~~~ 203 (215)
+ + .+.|++ +|.
T Consensus 161 P~~~~v~W~~-~g~ 173 (232)
T 3qhz_H 161 PEPVTVSWNS-GAL 173 (232)
T ss_dssp SSCCEEEEGG-GTB
T ss_pred CCCeEEEEEE-CCE
Confidence 3 3 588999 664
No 238
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.35 E-value=7.1e-12 Score=96.69 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.+...+... +.+|++++|.|.+.+. .+. +.|++++...... . ...........+.|.|.+
T Consensus 119 ~p~~~~~~~~~-v~~G~~v~L~C~~~~~-~~~-------~~w~k~g~~~~~~-~--------~~~~~~~~~~~~~L~i~~ 180 (316)
T 3vh8_G 119 KPSLLAHPGPL-VKSGERVILQCWSDIM-FEH-------FFLHKEGISKDPS-R--------LVGQIHDGVSKANFSIGP 180 (316)
T ss_dssp CCEEEEESCSE-EETTCCEEEEEEESSC-CSE-------EEEEETTCCSCCE-E--------EECEEETTEEEEEEEECS
T ss_pred CCeEEecCCCc-cCCCCeEEEEEcCCCC-CcE-------EEEEECCCccccc-e--------eeeeecCCCceEEEEECC
Confidence 45555444444 7899999999999644 334 8899954332110 0 000111122456899999
Q ss_pred ceecCCEEEEEEcc
Q psy5838 97 VQESDRGWYMCQVN 110 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~ 110 (215)
++.+|+|.|+|.+.
T Consensus 181 v~~~D~G~Y~C~a~ 194 (316)
T 3vh8_G 181 MMLALAGTYRCYGS 194 (316)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CChhhCceEEEEEe
Confidence 99999999999976
No 239
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.34 E-value=1.5e-11 Score=79.22 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCC--ceEEEEcCCceEEEE
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP--RISLTYNDHRSWFLN 93 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 93 (215)
.++.|...+..+.+.+|++++|.|.+.+ +.+. +.|+|+ +..+ .... ++.+...+ ..
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~-------v~W~k~-g~~l--------~~~~~~~~~~~~~~-~~---- 63 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDAN-------VKWFKN-GEEI--------IPGPKSRYRIRVEG-KK---- 63 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCC-------CEEEET-TEEC--------CCSTTCSEEEEEET-TE----
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecC-CCCe-------EEEEEC-CEEC--------CCCCceEEEEEEcC-CE----
Confidence 3455888888999999999999999987 4455 999994 4432 1222 33443322 12
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|
T Consensus 64 -------------------------------~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~p 98 (103)
T 1x44_A 64 -------------------------------HILIIEGATKADAAEYSVMTTG---GQSSAKLSVDLKS 98 (103)
T ss_dssp -------------------------------EEEEEEEECTTTCSEEEEEETT---EEEEEEEEEECCC
T ss_pred -------------------------------EEEEECCCCcccCEEEEEEECC---CcEEEEEEEeCCC
Confidence 2366777777777777777754 3444556665544
No 240
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.5e-12 Score=80.13 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=62.2
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
...+|.|...+....+.+|++++|.|.+.+ +.+. +.|+|+ +..+ ....++.+...+ ..
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~-------v~W~k~-g~~~--------~~~~~~~~~~~~-~~---- 62 (103)
T 2edf_A 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTP-------VHWLKD-RKAI--------RKSQKYDVVCEG-TM---- 62 (103)
T ss_dssp CCCCCCEEECCCCEEECTTSCEEECCEESS-SSCC-------CCEEES-SCBC--------CCSSSEEEEEET-TE----
T ss_pred CCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCc-------EEEEEC-CEEc--------cCCCCEEEEECC-CE----
Confidence 345688888888999999999999999997 4555 899994 4433 123344443322 11
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|
T Consensus 63 -------------------------------~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p 97 (103)
T 2edf_A 63 -------------------------------AMLVIRGASLKDAGEYTCEVEA---SKSTASLHVEEKA 97 (103)
T ss_dssp -------------------------------EEEEESSCCTTTCSEEEEECSS---CEEEEEEEECCCS
T ss_pred -------------------------------EEEEECCCCcccCEEEEEEEcc---CCcEEEEEEeCCC
Confidence 2366777777778888887765 3445556666554
No 241
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.33 E-value=1.6e-12 Score=84.50 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=38.1
Q ss_pred cccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.......|.|...+..+.+.+|+++.|.|.+.+.+.+. +.|++++
T Consensus 8 ~~~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~-------v~W~k~g 52 (106)
T 1nct_A 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPT-------VTWLRKG 52 (106)
T ss_dssp -CCSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCB-------CCBCSSS
T ss_pred cCCCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCE-------EEEEECC
Confidence 34455678899999999999999999999999888877 9999943
No 242
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.33 E-value=1.7e-12 Score=96.65 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=47.8
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCc-ceeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCC-CeEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMR-SRQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPE-PYVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~i~W~ 198 (215)
.|.|.+++.+|+|.|+|.+.+.... .....+ .+..+|.+........ ...|+.+.|.|.+.| +|+ ..+.|+
T Consensus 83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~ 160 (239)
T 1i1c_A 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE--EMTQSQVSITCMVKGFYPPDIYTEWK 160 (239)
T ss_dssp EEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG--GGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH--HhcCCcEEEEEEEeeeECCCeEEEEE
Confidence 3666777777777777777653221 111122 2335666654422221 235888999999998 455 379999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ ||..+.
T Consensus 161 k-~g~~l~ 167 (239)
T 1i1c_A 161 M-NGQPQE 167 (239)
T ss_dssp E-TTEECS
T ss_pred E-CCEECC
Confidence 9 777664
No 243
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.33 E-value=4.7e-12 Score=80.04 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|.|...+..+.+.+|+++.|.|.+.+.|.+. +.|++++
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~-------i~W~k~~ 40 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-------ATWTVGD 40 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCE-------EEEECST
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCE-------EEEEECC
Confidence 57888788899999999999999999999887 9999954
No 244
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.33 E-value=2.8e-11 Score=82.93 Aligned_cols=103 Identities=23% Similarity=0.367 Sum_probs=65.4
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccce
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
.|...+..+.+.+|++++|.|.+.+.+.+. +.|++.+...+. ........+.|+......
T Consensus 40 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------i~W~~~~~~~i~-~~~~~~~~~~r~~~~~~~------------ 99 (145)
T 1z9m_A 40 DSQPWTSDETVVAGGTVVLKCQVKDHEDSS-------LQWSNPAQQTLY-FGEKRALRDNRIQLVTST------------ 99 (145)
T ss_dssp TTCCBCCCEEEETTSCEEEEEECSCCTTCC-------EEEECTTCCEEE-ETTEECSCCTTEEEEEEC------------
T ss_pred ceecCCceEEEEcCCCEEEEEEEcCCCCcE-------EEEECCCCcEEE-ECCceecccCCEEEecCC------------
Confidence 345567889999999999999999877666 999975544332 111111222343332211
Q ss_pred ecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSI 164 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~ 164 (215)
.....|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|..
T Consensus 100 -----------------------~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~L~V~~~P~~ 142 (145)
T 1z9m_A 100 -----------------------PHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQK 142 (145)
T ss_dssp -----------------------SSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCCC-
T ss_pred -----------------------CCeEEEEECCCChhhCEEEEEEEEcCCCceEEEEEEEEeCCCC
Confidence 1223577788888888888888865544455666777776643
No 245
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-12 Score=78.98 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=48.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.|...+..+.+.+|++++|.|.+ +.+.+. +.|+| ++..+ ....++.+...+ ....|.|.+
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~-------v~W~k-~~~~l--------~~~~~~~~~~~~-~~~~L~I~~ 69 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVK-------VRWQR-GGSDI--------SASNKYGLATEG-TRHTLTVRE 69 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCC-------CEEEC-SSSEE--------CSSTTCEEEEET-TEEEEEESS
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCe-------EEEEE-CCEEC--------CCCCcEEEEEcC-CEEEEEEcC
Confidence 4788888899999999999999999 555666 99999 44443 223455444332 233455444
Q ss_pred ceecCCEEEEEEc
Q psy5838 97 VQESDRGWYMCQV 109 (215)
Q Consensus 97 ~~~~d~G~Y~C~~ 109 (215)
++.+|+|.|+|.+
T Consensus 70 v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 70 VGPADQGSYAVIA 82 (95)
T ss_dssp CCTTCCSEEEEEE
T ss_pred CCcccCEEEEEEE
Confidence 4444444444443
No 246
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.33 E-value=1.7e-11 Score=91.66 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-ccE--E-Eeeec--e----eeeCCceEEEEcC-CceEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QTI--L-SIHHN--V----ITQNPRISLTYND-HRSWF 91 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~~--~-~~~~~--~----~~~~~~~~~~~~~-~~~~~ 91 (215)
.+..+.+.+|++|+|.|.+.+.... ... +.|+++.. ..+ + ..... . ....+|+.+..+. ....+
T Consensus 5 ~~~~v~v~~G~~v~L~C~~s~~~~~-~~~----v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 79 (248)
T 3u2s_H 5 ESGGGVVQPGSSLRLSCAASGFDFS-RQG----MHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLY 79 (248)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGG-GSC----EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred cCCCEEEeCCCCEEEEEEeccccCC-ccE----EEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEE
Confidence 3457889999999999999753211 111 89998642 211 1 11100 0 0123566665442 34556
Q ss_pred EEEccceecCCEEEEEEccCCC-----ceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEE----cCC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNP-----RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV----VPP 162 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~----~~p 162 (215)
|.|.+++.+|+|.|.|.+.+.. ...+.|.... .+.|.-. ........+.|. .+|
T Consensus 80 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----~~~~~~t~l~V~~~~~~~P 142 (248)
T 3u2s_H 80 LQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDG-------------YYNYHYM----DVWGKGTTVTVSSASTKGP 142 (248)
T ss_dssp EEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGC-------------CEEEEEE----EEECCCEEEEECSCCCBCC
T ss_pred EEECCCCHHHCEEEEEEEeCCCCcccccccccccccc-------------ccccccc----eeeCCCEEEEEcccCCCCC
Confidence 7777777766666666543310 0111110000 0001000 001112234444 234
Q ss_pred eEEecCCCcceeeecCCcEEEEEEecc-cC-CCeEEEEeCCCc
Q psy5838 163 SIIDKDTSTDLVVREQANVTLNCKAQG-YP-EPYVMWRREDGA 203 (215)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~i~W~~~~~~ 203 (215)
.+..... ...+..|+.+.|.|.+.+ .| ...+.|++ +|.
T Consensus 143 ~v~~~~~--~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~-~g~ 182 (248)
T 3u2s_H 143 SVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GAL 182 (248)
T ss_dssp EEEEECC--C------CEEEEEEEEEEEBSSCCEEEEGG-GTB
T ss_pred EEEEeCC--CccccCCCcEEEEEEEeeEECCCeEEEEeE-CCc
Confidence 4443212 223456999999999988 45 34699999 554
No 247
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=84.23 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=66.5
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
....+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|+++ +..+. ...+.........
T Consensus 5 ~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~~~-g~~~~--------~~~~~~~~~~~~~---- 64 (110)
T 2dm3_A 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD-------LSWQLD-GKPVR--------PDSAHKMLVRENG---- 64 (110)
T ss_dssp CCCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCE-------EECBBS-SSBCC--------CCSSEEEEECTTS----
T ss_pred CCCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCE-------EEEEEC-CEECC--------CCCceEEEEecCC----
Confidence 445689999999999999999999999999888776 999994 44321 1111111111111
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
...|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 65 -------------------------------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p 104 (110)
T 2dm3_A 65 -------------------------------VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104 (110)
T ss_dssp -------------------------------CEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCC
T ss_pred -------------------------------eEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCC
Confidence 12466777777888888888865 3444555667776655
No 248
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=4.6e-12 Score=82.12 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=34.3
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
....|.|...+..+.+.+|+++.|.|.+.+.+.+ +.|+|++
T Consensus 5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~--------v~W~k~g 45 (106)
T 2dlt_A 5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT--------GKWYKNG 45 (106)
T ss_dssp SCCCCCEEECCCCEEEESSCCEECCCEESCSSCE--------EEEEESS
T ss_pred CCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc--------eEEEcCC
Confidence 3457889999999999999999999999876543 8899943
No 249
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.32 E-value=1.6e-11 Score=91.27 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=25.0
Q ss_pred CCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+.+.+.. .+.. +.|+++.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~----v~W~rq~ 42 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSF----WGWVRQP 42 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCE----EEEEEEC
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceE----EEEEEEC
Confidence 446788999999999999865432 0111 8999863
No 250
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.32 E-value=4.1e-12 Score=93.98 Aligned_cols=140 Identities=24% Similarity=0.353 Sum_probs=79.2
Q ss_pred CCcc-cCCCCceEEEeCCcEEEEEEeecc-CC-c-cceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEE
Q psy5838 17 MPHF-AEPIPNVTVTVGRDALLACVVDNL-KG-F-KGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 17 ~p~~-~~~~~~~~~~~G~~v~L~C~~~~~-~~-~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (215)
.|.+ ...|....+.+|++++|.|.+.+. +. + . +.|++ ++..++.. .... ...
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~-------v~W~~-~g~~~~~~-------~~~~-~~~-------- 67 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLS-------VTWTR-EKSGNLRP-------DPMV-LQE-------- 67 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCE-------EEEEC-SSSSCCCC-------CCCE-EEE--------
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeE-------EEEEc-CCeecccc-------cccc-ceE--------
Confidence 3443 345666667899999999999884 42 3 5 99998 44433100 0000 000
Q ss_pred EEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEE------cCCeEEe
Q psy5838 93 NIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV------VPPSIID 166 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~p~~~~ 166 (215)
...|.|. ....|.|.+++.+|.|.|+|.+.+... .....+.|. .+|.+..
T Consensus 68 -------~~~g~~~----------------~~s~L~I~~~~~~D~g~Y~C~~~~~~~-~~~~~~~v~~~~~~~~~P~v~v 123 (231)
T 2w59_A 68 -------HFNGTYS----------------ASSAVPVSTQDWLSGERFTCTVQHEEL-PLPLSKSVYRNTGPTTPPLIYP 123 (231)
T ss_dssp -------CTTSCEE----------------EEEEEECCHHHHHTTCCEEEEEECTTC-SSCEEEEECCCCSCCBCCEEEE
T ss_pred -------CCCCcEE----------------EEEEEEecchhccCCCEEEEEEEcCCC-CCceEEEEecCCCCCcCCEEEE
Confidence 0111111 012366777777778888888765332 123333332 3555544
Q ss_pred cCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeCCCccccc
Q psy5838 167 KDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRREDGANLSY 207 (215)
Q Consensus 167 ~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~~~~~ 207 (215)
...... .+ .|+.+.|.|.+.++ |+ +.+.|++ ||..+..
T Consensus 124 ~~~~~~-~~-~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~l~~ 163 (231)
T 2w59_A 124 FAPHPE-EL-SLSRVTLSCLVRGFRPRDIEIRWLR-DHRAVPA 163 (231)
T ss_dssp ECCCGG-GG-GSSEEEEEEEEEEEBSSCCEEEEEE-TTEECCG
T ss_pred eCCCHH-Hh-ccCceEEEEEEEeccCCCcEEEEEE-CCEECCC
Confidence 322211 12 35679999999985 53 6899999 7876643
No 251
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.31 E-value=3.2e-11 Score=77.25 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCCcccCCCCc-eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 16 LMPHFAEPIPN-VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 16 ~~p~~~~~~~~-~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
..|.|...+.. ..+.+|++++|.|.+. .+.+. +.|+|+ +..+ ....++.+...+ ..
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~-------v~W~k~-g~~i--------~~~~~~~~~~~~-~~----- 62 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLE-------VKWYKN-GQEI--------RPSTKYIFEHKG-CQ----- 62 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSC-------EEEEES-SCBC--------CCBTTEEEEEET-TE-----
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCce-------EEEEEC-CEEC--------CCCCCEEEEecC-CE-----
Confidence 47888877776 6888999999999998 56666 999994 4433 123344443322 11
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+ +.....+.|.|..+|
T Consensus 63 ------------------------------~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 63 ------------------------------RILFINNCQMTDDSEYYVTA---GDEKCSTELFVRSGP 97 (100)
T ss_dssp ------------------------------EEEEEEEECTTTCCEEEEEE---TTEEEEEEEEECCSC
T ss_pred ------------------------------EEEEEcCCCcCcCEEEEEEE---CCceEEEEEEEecCC
Confidence 23566777777777777777 333444556665554
No 252
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.31 E-value=1.6e-11 Score=89.09 Aligned_cols=28 Identities=25% Similarity=0.678 Sum_probs=24.2
Q ss_pred cCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 177 EQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 177 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
+|+++.|.|. +.|.|.+.|++ ++..+..
T Consensus 127 ~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~ 154 (204)
T 1sy6_A 127 SGTTVILTCP--QYPGSEILWQH-NDKNIGG 154 (204)
T ss_dssp ETTEEEEECS--CCCSSCEEEEE-TTEEESC
T ss_pred cCCcEEEEcC--CCCCCceEEEE-CCEECCC
Confidence 8999999999 78888999999 7776654
No 253
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.31 E-value=8.4e-12 Score=79.70 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=34.9
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..+|.|...+..+.+.+|+++.|.|.+.+.+.+. +.|+++
T Consensus 3 ~~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-------v~W~~~ 42 (100)
T 3irg_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPE-------VTWSCG 42 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCE-------EEEEET
T ss_pred CCCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCc-------eEEEEC
Confidence 3467888888899999999999999999888877 999994
No 254
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.31 E-value=8.4e-11 Score=86.71 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=23.7
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+..... .. +.|||..
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~-~~----v~W~rq~ 40 (230)
T 3n9g_H 8 GAEVRKPGASTKVSCKASGYTFTH-YY----MHWVRQA 40 (230)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGG-SC----EEEEEEC
T ss_pred CCEEEcCCCCEEEEEEeecceecC-cE----EEEEEEC
Confidence 368899999999999997532111 11 9999853
No 255
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=81.78 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=50.7
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCC----ceEEEEcCCceE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP----RISLTYNDHRSW 90 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 90 (215)
..+|.|...+....+.+|+++.|.|.+.+.+ +. +.|+|+ +..+. ... ++.+...+ ...
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~-------v~W~k~-g~~i~--------~~~~~~~~~~~~~~~-~~~ 67 (101)
T 2edk_A 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQ-------VMWMKN-GVELT--------REDSFKARYRFKKDG-KRH 67 (101)
T ss_dssp CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CC-------CEEEES-SCBCC--------CSCCSSCCCEEEECS-SEE
T ss_pred cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CE-------EEEEEC-CEECC--------CCCCcceeEEEEECC-CEE
Confidence 3467888888899999999999999999877 66 999994 44331 122 44444332 334
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.|.+++.+|+|.|+|.+.
T Consensus 68 ~L~I~~~~~~D~G~Y~C~a~ 87 (101)
T 2edk_A 68 ILIFSDVVQEDRGRYQVITN 87 (101)
T ss_dssp EEECSSCCGGGCSBEEEECS
T ss_pred EEEECCCChhhCEEEEEEEc
Confidence 45555555555555555443
No 256
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.31 E-value=9.8e-12 Score=86.18 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=67.4
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|...+..+.+..|++++|.|.+.+.+.+. +.|+|+ +..+ ....++.+.......
T Consensus 39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~-------v~W~k~-g~~~--------~~~~~~~~~~~~~~~----- 97 (154)
T 1fhg_A 39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE-------VMWFKD-DNPV--------KESRHFQIDYDEEGN----- 97 (154)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCE-------EEEEET-TEEC--------CCSSSEEEEECTTCE-----
T ss_pred CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCE-------EEEEEC-CEEC--------CCCCcEEEEECCCCe-----
Confidence 3478888888899999999999999999988887 999994 4332 223344443322112
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEe
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIID 166 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~ 166 (215)
..|.|.+++..|+|.|+|.+.+. +.....+.|.|..+|....
T Consensus 98 ------------------------------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 98 ------------------------------CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp ------------------------------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-----
T ss_pred ------------------------------EEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCCC
Confidence 24667777778888888888653 4445566788877776553
No 257
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.29 E-value=6.1e-11 Score=76.27 Aligned_cols=94 Identities=24% Similarity=0.383 Sum_probs=62.8
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|++++|.|.+.+.+.+ +.|+++ +..+ ....++.+..++ ..
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--------v~W~k~-~~~l--------~~~~~~~~~~~~-~~---- 62 (103)
T 2e7b_A 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP--------VKWCYG-NNVL--------RPGDKYSLRQEG-AM---- 62 (103)
T ss_dssp CCCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS--------CEEEES-SSBC--------CCSSSEEEEECS-SE----
T ss_pred CCCCCEEEecCccEEEECCCcEEEEEEEeCCCCC--------eEEEEC-CEEC--------CCCCcEEEEEcC-CE----
Confidence 4457888888899999999999999999887655 789994 4433 223444444332 12
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCe
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPS 163 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~ 163 (215)
..|.|.+++.+|+|.|+|.+ +.....+.|.|..+|.
T Consensus 63 -------------------------------~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~V~~~p~ 98 (103)
T 2e7b_A 63 -------------------------------LELVVRNLRPQDSGRYSCSF---GDQTTSATLTVTALPS 98 (103)
T ss_dssp -------------------------------EEEEECSCCTTTCCCEEEEC---SSCBCCBCEEEECCCC
T ss_pred -------------------------------EEEEEccCCcccCEEEEEEE---CCcEEEEEEEEEeccc
Confidence 23667777777788888873 3344455667766553
No 258
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.29 E-value=2.1e-11 Score=78.85 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=51.0
Q ss_pred cccCCCcccCCCCc-eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeC-CceEEEEcCCceE
Q psy5838 13 SESLMPHFAEPIPN-VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN-PRISLTYNDHRSW 90 (215)
Q Consensus 13 ~~~~~p~~~~~~~~-~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (215)
.....|.|...+.. ..+.+|+++.|.|.+ +.+.+. +.|+| ++..+. .+ .++.+...+ ...
T Consensus 11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~-------v~W~k-~g~~l~--------~~~~~~~~~~~~-~~~ 72 (104)
T 1pd6_A 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAE-------VKWLK-NGQEIQ--------MSGSKYIFESIG-AKR 72 (104)
T ss_dssp CCSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSC-------CEEEE-SSSEEC--------CCSSSSEEEEET-TEE
T ss_pred CccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCE-------EEEEE-CCEECC--------CCCCeEEEEecC-CEE
Confidence 34456888877666 889999999999999 566666 99999 444431 12 455544332 234
Q ss_pred EEEEccceecCCEEEEEEc
Q psy5838 91 FLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~ 109 (215)
.|.|.+++.+|+|.|+|.+
T Consensus 73 ~L~I~~v~~~D~G~Y~C~a 91 (104)
T 1pd6_A 73 TLTISQCSLADDAAYQCVV 91 (104)
T ss_dssp EEEECSCSSSSCEEEEEEE
T ss_pred EEEECCCCcccCEEEEEEE
Confidence 5665555555555555554
No 259
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.29 E-value=2.6e-11 Score=77.12 Aligned_cols=74 Identities=22% Similarity=0.433 Sum_probs=46.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccce
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ 98 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 98 (215)
+..++..+.+.+|+++.|.|.+.+. +.+. +.|+++ +..+ ....++.+...+ ....|.|.+++
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~-------v~W~~~-~~~~--------~~~~~~~~~~~~-~~~~L~i~~v~ 66 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQ-------VTWYFG-VRQL--------ENSEKYEITYED-GVAILYVKDIT 66 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCE-------EEEEET-TEEC--------CSSSSEEEEEET-TEEEEEECSCC
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCE-------EEEEEC-CEEC--------cCCCCEEEEEcC-CeEEEEEecCC
Confidence 4556778999999999999999985 7776 999995 3322 223444443322 23345555554
Q ss_pred ecCCEEEEEEcc
Q psy5838 99 ESDRGWYMCQVN 110 (215)
Q Consensus 99 ~~d~G~Y~C~~~ 110 (215)
.+|+|.|+|.+.
T Consensus 67 ~~D~G~Y~C~a~ 78 (97)
T 2bk8_A 67 KLDDGTYRCKVV 78 (97)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCeEEEEEEE
Confidence 444444444443
No 260
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.28 E-value=1.9e-11 Score=79.34 Aligned_cols=42 Identities=17% Similarity=0.429 Sum_probs=31.0
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
....|.|...+....+.+|++++|.|.+.+.+.+. +.|++++
T Consensus 7 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------i~W~~~~ 48 (108)
T 3kvq_A 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ-------IMWFKDN 48 (108)
T ss_dssp ----CCCBSCCCCEEEETTCCEEEECBCC----CC-------EEEEESS
T ss_pred ccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCe-------EEEEECC
Confidence 34578888888999999999999999999887777 9999954
No 261
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.28 E-value=1.1e-10 Score=89.41 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=80.7
Q ss_pred ecCCEEEEEEccCCCceEEEEccC-----------------CeEEEEEcccCC-CCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH-----------------RSWFLNIKNVQE-SDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~-----------------~~~~l~i~~~~~-~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
..+.-...|.+.+.|.+.+.|... ....|.|.+++. +|+|.|+|.+.+. +.....+.|.|.
T Consensus 20 ~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 99 (304)
T 2yd9_A 20 SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99 (304)
T ss_dssp TTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEE
T ss_pred CCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEe
Confidence 455667889999888888888321 126799999998 9999999999763 444566778887
Q ss_pred cC-------CeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCccccc
Q psy5838 160 VP-------PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 160 ~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 207 (215)
.+ |.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..
T Consensus 100 ~~~~~p~~~p~i~~--~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k-~~~~~~~ 151 (304)
T 2yd9_A 100 REDQLPSGFPNIDM--GPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDP 151 (304)
T ss_dssp CGGGCCTTCCEEEE--CCCCEEEETTSCEEECCEEECSSCCEEEEEE-TTEECCG
T ss_pred ccccCCCCCCeeec--CCccEEEeCCCeEEEEEECccCCCCeEEEEE-CCEECcC
Confidence 65 44443 3345568899999999999999999999999 7766553
No 262
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=78.70 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=58.4
Q ss_pred cCCCcccCCCCc---eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEE
Q psy5838 15 SLMPHFAEPIPN---VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF 91 (215)
Q Consensus 15 ~~~p~~~~~~~~---~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (215)
...|.+...+.. +.+.+|++++|.|.+.+.+.+ +.|+|+ +..+ ....++.+...+ ..
T Consensus 5 ~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~--------v~W~k~-g~~~--------~~~~~~~~~~~~-~~-- 64 (104)
T 2e6p_A 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP--------ATWYKD-GQKV--------EESELLVVKMDG-RK-- 64 (104)
T ss_dssp CSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC--------CEEEET-TEEC--------CCBTTBEEEEET-TE--
T ss_pred CCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc--------cEEeeC-CEEC--------CCCCCEEEEeCC-CE--
Confidence 346777666666 889999999999999887655 789994 4432 122344333222 12
Q ss_pred EEEccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+. ...+.|.|..+|
T Consensus 65 ---------------------------------~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~l~V~~~P 99 (104)
T 2e6p_A 65 ---------------------------------HRLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPS 99 (104)
T ss_dssp ---------------------------------EEEEESSCCTTTCEEEEEECSSC---CCCEEEEEECCC
T ss_pred ---------------------------------EEEEECCCChhhCEEEEEEECCc---eEEEEEEEcCCC
Confidence 23566677777777777777543 235566666655
No 263
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.27 E-value=9.4e-12 Score=79.01 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=35.5
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
...+|.|...+....+.+|+++.|.|.+.+.+ +. +.|+| ++..
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~-------i~W~k-~g~~ 48 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QS-------INWLR-DGVQ 48 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CE-------EEEEB-TTBC
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-Cc-------eEEEE-CCEe
Confidence 34567888888899999999999999999876 55 99999 4443
No 264
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.6e-12 Score=81.94 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=33.9
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeecc---CCccceeeeEEEEEEec
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNL---KGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~---~~~~~~~~~~~v~W~~~ 61 (215)
...+.|...|..+.+.+|++++|.|.+.+. +.|. |.|||+
T Consensus 10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~-------V~W~Kg 52 (118)
T 2edn_A 10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPT-------IKWFKG 52 (118)
T ss_dssp CCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCC-------CEEEET
T ss_pred CCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCc-------EEEeeC
Confidence 335778888999999999999999999875 5666 999994
No 265
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.26 E-value=8e-11 Score=77.07 Aligned_cols=89 Identities=26% Similarity=0.408 Sum_probs=58.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.|...+....+.+|+++.|.|.+.+. +. +.|+|+ +..+ ....++.+..++ ..
T Consensus 19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~-------v~W~k~-~~~l--------~~~~~~~~~~~~-~~------- 72 (113)
T 2edh_A 19 PIKFTEGLRNEEATEGATAVLRCELSKM--AP-------VEWWKG-HETL--------RDGDRHSLRQDG-AR------- 72 (113)
T ss_dssp CCCEEECCCCCEECTTSCEEEEEEESSC--CC-------CEEEES-SSBC--------CCSSSEEEEEET-TE-------
T ss_pred CCcccccCCceEEeCCCeEEEEEEECCC--Cc-------EEEEEC-CEEC--------CCCCcEEEEECC-CE-------
Confidence 4688888888999999999999999764 44 899994 4433 223455444322 12
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+ +.....+.|.|..+|
T Consensus 73 ----------------------------~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 73 ----------------------------CELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRAMP 107 (113)
T ss_dssp ----------------------------EEEEECSCCSTTCEEEEEEE---TTEEEEEEEEECCCC
T ss_pred ----------------------------EEEEECCCChhhCEEEEEEe---CCCCEEEEEEEeCCC
Confidence 23666777777777777777 334444556666554
No 266
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=94.83 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=82.1
Q ss_pred CCCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecC
Q psy5838 23 PIPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD 101 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 101 (215)
.+.......|+.+.|.|.. .+.|.+. +.|+++++. +..... ...+.... ....|.|.++...|
T Consensus 120 ~~~~~~~~~~~~~~l~C~~~~g~P~~~-------i~W~~~~~~-~~~~~~--~~~~~~~~------~~s~l~i~~~~~~d 183 (308)
T 4fom_A 120 GPDSLIDGGNETVAAICIAATGKPVAH-------IDWEGDLGE-MESTTT--SFPNETAT------IISQYKLFPTRFAR 183 (308)
T ss_dssp CSSCCCTTCSCEEEEEEEEEEEBSCCE-------EEECCCSSB-CCEEEE--ECTTSCEE------EEEEEEECCCGGGT
T ss_pred ccceeEEcCCceEEEEEEecCCcCCce-------EEEEECCcc-cccccc--eeeeeccc------ccccceEEeeeecC
Confidence 3445555678899999986 4667776 999995433 211100 00111111 23368999999999
Q ss_pred CEEEEEEccC---------------------------------------------CCce-EEEEcc-----------CCe
Q psy5838 102 RGWYMCQVNT---------------------------------------------NPRI-SLTYND-----------HRS 124 (215)
Q Consensus 102 ~G~Y~C~~~~---------------------------------------------~~~~-~~~~~~-----------~~~ 124 (215)
+|.|+|.|.+ .|.+ .+.|.. ..+
T Consensus 184 ~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~ 263 (308)
T 4fom_A 184 GRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDN 263 (308)
T ss_dssp TCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTT
T ss_pred CccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCC
Confidence 9999999763 2333 466632 123
Q ss_pred EEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCe
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPS 163 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~ 163 (215)
..|.|.+++.+|+|.|+|.|.+ .+.....+.|.|..+|.
T Consensus 264 ~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 264 TLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp EEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred eEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 4466889999999999999976 45566677788888875
No 267
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.26 E-value=8.1e-12 Score=90.71 Aligned_cols=75 Identities=19% Similarity=0.383 Sum_probs=44.1
Q ss_pred EcccCCCCCeEEEEEeecCCCcc-eeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CCC-eEEEEeCC
Q psy5838 129 IKNVQESDRGWYMCQVNTDPMRS-RQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEP-YVMWRRED 201 (215)
Q Consensus 129 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~i~W~~~~ 201 (215)
|......|+|.|+|.+.+..... ....+ .+..+|.+........ .+ .|+.+.|.|.+.|+ |++ .+.|++ |
T Consensus 72 i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~-~~~~~~L~C~~~g~~P~~~~v~W~k-~ 148 (207)
T 1l6x_A 72 VLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-EL-TKNQVSLTCLVKGFYPSDIAVEWES-N 148 (207)
T ss_dssp CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGG-GG-GSSEEEEEEEEEEEBSSCCEEEEEE-T
T ss_pred EEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChH-Hh-cCCcEEEEEEEeCeECCCeEEEEEE-C
Confidence 33333445888888886543221 22223 2345666554322221 12 46669999999985 543 899999 7
Q ss_pred Ccccc
Q psy5838 202 GANLS 206 (215)
Q Consensus 202 ~~~~~ 206 (215)
|..+.
T Consensus 149 g~~~~ 153 (207)
T 1l6x_A 149 GQPEN 153 (207)
T ss_dssp TEEEC
T ss_pred Ceecc
Confidence 77654
No 268
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.26 E-value=2.6e-10 Score=84.18 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=27.5
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++++|.|.+.+.... .. .+.|+++.
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~-~~----~v~W~rq~ 41 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIG-NY----YINWYRKT 41 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGG-GS----EEEEEEEE
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccC-cc----eEEEEEEC
Confidence 3455678899999999999999854311 11 19999863
No 269
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-10 Score=73.92 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEE
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 94 (215)
...|.|...+..+.+.+|++++|.|.+ +.+.+. +.|+|++ ..+ ....++.+...+
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~-------v~W~k~~-~~l--------~~~~~~~~~~~~-------- 60 (103)
T 2dku_A 6 SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAAT-------VTWRKGL-LEL--------RASGKHQPSQEG-------- 60 (103)
T ss_dssp CCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSC-------CEEEESS-CBC--------CSSSSEEEEEET--------
T ss_pred CCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCe-------EEEEeCC-EEC--------CCCCeEEEEeCC--------
Confidence 346889889999999999999999995 556666 9999954 432 123344433221
Q ss_pred ccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 95 KNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
....|.|.+++.+|+|.|+|. .+.....+.|.|..+|
T Consensus 61 ----------------------------~~~~L~I~~v~~~D~G~Y~C~---~g~~~~~~~l~V~~~p 97 (103)
T 2dku_A 61 ----------------------------LTLRLTISALEKADSDTYTCD---IGQAQSRAQLLVQGRR 97 (103)
T ss_dssp ----------------------------TEEEEEEESCCTTTCSEEEEE---CSSCBCCEEEEEECSC
T ss_pred ----------------------------CEEEEEECCCCcccCEEEEEE---eCCceEEEEEEEeCcc
Confidence 112366777777888888887 3334455667776554
No 270
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=2.5e-11 Score=95.68 Aligned_cols=108 Identities=23% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDR 102 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 102 (215)
.+..+.+.+|++++|.|.+.+ +.+. +.|+++++..+... ..+.|+.+ .++
T Consensus 252 ~~~~v~v~~G~~~~l~C~~~g-p~p~-------i~W~~~~~~~~~~~-----~~~~r~~~-~~~---------------- 301 (361)
T 2xot_A 252 KESAWEAHLGDTLTIRCDTKQ-QGMT-------KVWVSPSNEQVLSQ-----GSNGSVSV-RNG---------------- 301 (361)
T ss_dssp CCCCCEEETTCCEEECCCCSS-TTCE-------EEEECTTSCBCCSC-----CSSSSEEE-ETT----------------
T ss_pred cccCceecCCCeEEEEeEeeC-CCCe-------EEEEeCCCeeEeec-----ccCCceEe-ecC----------------
Confidence 356789999999999999998 6666 99999655432100 11223333 111
Q ss_pred EEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcE
Q psy5838 103 GWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANV 181 (215)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~ 181 (215)
.|.|.+++.+|+|.|+|.|.+. +.....+.+.|... ..+|+.+
T Consensus 302 -----------------------~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~-------------~~~g~~~ 345 (361)
T 2xot_A 302 -----------------------DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHD 345 (361)
T ss_dssp -----------------------EEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESS-------------CCC----
T ss_pred -----------------------eEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEee-------------eccCCce
Confidence 2667778888888888888654 33344455555321 1468899
Q ss_pred EEEEEecccCCCeEE
Q psy5838 182 TLNCKAQGYPEPYVM 196 (215)
Q Consensus 182 ~l~C~~~~~p~~~i~ 196 (215)
.|.|.+.|.|.|.|.
T Consensus 346 ~l~C~~~g~P~P~i~ 360 (361)
T 2xot_A 346 TLNAAADPWSHPQFE 360 (361)
T ss_dssp ---------------
T ss_pred EEEEEeCCCCCCccc
Confidence 999999999988763
No 271
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.25 E-value=4.3e-11 Score=92.04 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=46.4
Q ss_pred eEEEeCCcEEEEEEe------eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 27 VTVTVGRDALLACVV------DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~------~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
..+..|+++.|.|.+ .+.+.+. +.|+++ +..+.. ...++.. ..+.|.|.+++.+
T Consensus 113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~-------i~W~k~-~~~l~~-------~~~~~~~-----~~~~L~i~~v~~~ 172 (315)
T 1itb_B 113 QKLPVAGDGGLVCPYMEFFKNENNELPK-------LQWYKD-CKPLLL-------DNIHFSG-----VKDRLIVMNVAEK 172 (315)
T ss_dssp EEEETTSCEEEECSSCTTTCTTTTCCCC-------CEEEET-TEECCC-------CSSSEEE-----ETTEEEESSCCGG
T ss_pred eEEecCCCeEEEEecccccccCCCCCCE-------EEEEEC-CEECCC-------ccceEee-----cCceEEEEeceeh
Confidence 567889999999998 6777777 999994 443311 1222211 1238999999999
Q ss_pred CCEEEEEEcc
Q psy5838 101 DRGWYMCQVN 110 (215)
Q Consensus 101 d~G~Y~C~~~ 110 (215)
|+|.|+|.+.
T Consensus 173 d~G~Y~C~a~ 182 (315)
T 1itb_B 173 HRGNYTCHAS 182 (315)
T ss_dssp GCEEEEEEEE
T ss_pred hCcEEEEEEE
Confidence 9999999876
No 272
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-11 Score=79.19 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=37.2
Q ss_pred ccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
....+.|.|..++.+..+.+|++++|.|.+.+ .+. +.|+| ++..+
T Consensus 3 v~~~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~-------v~W~k-nG~~l 47 (112)
T 2e6q_A 3 SGSSGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQ-------GTWFL-NGEEL 47 (112)
T ss_dssp CSCCSCCCEEECCCCEEEETTCEEEEEEEESS--CCC-------CEEEE-SSCBC
T ss_pred ccccCCcEEecCCCCeEEcCCCcEEEEEEECC--CCe-------EEEEE-CCEEC
Confidence 34556788999999999999999999999997 455 99999 55554
No 273
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.24 E-value=3.5e-11 Score=78.13 Aligned_cols=92 Identities=23% Similarity=0.367 Sum_probs=61.1
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEE
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLN 93 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (215)
....|.|...+..+.+.+|++++|.|.+.+. +. +.|+|++ ..+ ....++.+...+ ..
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~-------v~W~k~~-~~~--------~~~~~~~~~~~~-~~---- 61 (108)
T 2dm7_A 5 SSGPARFTQDLKTKEASEGATATLQCELSKV--AP-------VEWKKGP-ETL--------RDGGRYSLKQDG-TR---- 61 (108)
T ss_dssp SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CC-------CEEESSS-SBC--------CSSSSCEEEEET-TE----
T ss_pred cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC--Ce-------eEEEECC-EEC--------CCCCCEEEEecC-CE----
Confidence 3457889888899999999999999999764 44 8999954 332 123444443322 11
Q ss_pred EccceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCC
Q psy5838 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p 162 (215)
..|.|.+++.+|+|.|+|.+.+ ....+.+.|..+|
T Consensus 62 -------------------------------~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p 96 (108)
T 2dm7_A 62 -------------------------------CELQIHDLSVADAGEYSCMCGQ---ERTSATLTVRALP 96 (108)
T ss_dssp -------------------------------EEEEESSCCTTTCSEEEEEETT---EEEEEECEEECCC
T ss_pred -------------------------------EEEEECCCCcccCEEEEEEEcC---CEEEEEEEEecCC
Confidence 2366777777788888888732 3444556666544
No 274
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=99.24 E-value=3.1e-11 Score=78.48 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=48.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc--EEEeeecee--eeCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT--ILSIHHNVI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|+.. .. ++....... ....|+..... ...+.|.|
T Consensus 4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I 75 (108)
T 1jhl_L 4 LTQSPSYLVASPGETITINCRASKSISKS-------LAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGS-GTDFTLTI 75 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEES-SSEEEEEE
T ss_pred eeccCCeeEEcCCCCEEEEeEECCCCCce-------EEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEec-CCEEEEEE
Confidence 44556778999999999999999876665 99999642 21 111110000 11245544332 23445555
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|+|.+.+
T Consensus 76 ~~v~~~DsG~Y~C~~~n 92 (108)
T 1jhl_L 76 SSLEPEDFAMYICQQHN 92 (108)
T ss_dssp CSCCTTCCSEEEEEECS
T ss_pred CCCCHHHCEEEEEEEcc
Confidence 55555555555555544
No 275
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=99.23 E-value=3.5e-11 Score=78.41 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=50.5
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeeece-eeeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHHNV-ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~l 92 (215)
+.+...|..+.+.+|++|+|.|.+.+.+.+. +.|+++. +.. ++...... .....|+..... ...+.|
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~L 75 (109)
T 2q20_A 4 IQMTQSPSSLSASVGDRVTITCQASQDISNY-------LNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGS-GTDFTF 75 (109)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEE
T ss_pred ccEEeeCCEEEecCCCcEEEEEeeccCCCCc-------EEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecc-CCEEEE
Confidence 4455667789999999999999998765555 9999964 221 11111000 011345554432 234556
Q ss_pred EEccceecCCEEEEEEccC
Q psy5838 93 NIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~ 111 (215)
.|.+++.+|+|.|.|.+.+
T Consensus 76 ~I~~v~~~DsG~Y~C~~~~ 94 (109)
T 2q20_A 76 TISSLQPEDIATYYCQQYD 94 (109)
T ss_dssp EESSCCGGGCEEEEEEECS
T ss_pred EECCCChhhCEEEEEEEee
Confidence 6666666666666665543
No 276
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=81.58 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.+.|...+..+.+.+|++++|.|.+.+.+.+. +.|+| ++..+. .+.++.+...+...
T Consensus 13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~k-~g~~l~--------~~~~~~~~~~~~~~------- 69 (115)
T 2cr6_A 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEP-------VHWFL-DKTPLH--------ANELNEIDAQPGGY------- 69 (115)
T ss_dssp CCEEEECCCEEEEETTSCEECCCEEESTTCCS-------CEEEE-SSCEEC--------CSSSCCBCCBTTTB-------
T ss_pred CCeEeccCccEEEeCCCcEEEEEEEcCCCCCc-------cEEEE-CCEECC--------CCCcEEEEEcCCCE-------
Confidence 35788888899999999999999999888777 99999 444331 22232222111111
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEe
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIID 166 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~ 166 (215)
..|.|.+++.+|+|.|+|.+ +.....+.|.|..+|.+..
T Consensus 70 ----------------------------~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~L~V~~~p~~~~ 108 (115)
T 2cr6_A 70 ----------------------------HVLTLRQLALKDSGTIYFEA---GDQRASAALRVTEKPSVFS 108 (115)
T ss_dssp ----------------------------CCBEECSCCTTTCEEEEEEE---TTEECCEEEEEECCSSCCS
T ss_pred ----------------------------EEEEEcCCChhhCEEEEEEE---CCeeEEEEEEEECCCceec
Confidence 23667777777888888874 2344456788887776543
No 277
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.21 E-value=8.9e-11 Score=93.01 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=50.7
Q ss_pred EEEEcccCCCCCeEEEEEeecCCC-cceeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEeccc-C-CCeEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPM-RSRQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-P-EPYVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~i~W~ 198 (215)
.|.|..++.+|.|.|+|.+.+... ......+ .+..+|.+....... ....|+.+.|.|.+.|+ | .+.|.|+
T Consensus 234 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L~C~~~g~~P~~i~v~W~ 311 (376)
T 2aty_A 234 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPK--EQMAKDKVSLTCMITDFFPEDITVEWQ 311 (376)
T ss_pred EEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCH--HHhcCCceEEEEEEEEeECCCcEEEEE
Confidence 477788888888899998865322 1221222 344567766543222 23458999999999985 4 3479999
Q ss_pred eCCCccc
Q psy5838 199 REDGANL 205 (215)
Q Consensus 199 ~~~~~~~ 205 (215)
+ ||+.+
T Consensus 312 k-~g~~~ 317 (376)
T 2aty_A 312 W-NGQPA 317 (376)
T ss_pred E-CCEEC
Confidence 9 77655
No 278
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.21 E-value=5.3e-11 Score=80.69 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=36.2
Q ss_pred cccccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 11 ~~~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
......+|.|...+..+.+.+|++++|.|.+.+.+.+. +.|++++.
T Consensus 15 ~~~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~-------i~W~k~~~ 60 (137)
T 3qr2_A 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-------IQWWFEGQ 60 (137)
T ss_dssp ------CCEEEECCCCEEEETTSCEEEEEEEECSSCCE-------EEEEEEES
T ss_pred CCCCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCe-------EEEEECCC
Confidence 44456689999999999999999999999999988887 99999543
No 279
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.21 E-value=8.8e-11 Score=94.47 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=72.7
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCC---------------eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEc
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHR---------------SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVV 160 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~ 160 (215)
+...++-...|.+.+.|.+.+.|.... ...|.|.+++.+|+|.|+|.+.+. +.....+.|.|..
T Consensus 60 V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 139 (423)
T 3qs7_E 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139 (423)
T ss_dssp ECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-
T ss_pred EecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec
Confidence 456777889999999999999994211 245899999999999999999764 3334455666765
Q ss_pred CCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcc
Q psy5838 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGAN 204 (215)
Q Consensus 161 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~ 204 (215)
+|.+.. .....+..|+.+.|.|.+.|.|.|.|+|++ ++..
T Consensus 140 ~p~~~~---~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k-~~~~ 179 (423)
T 3qs7_E 140 TLLYTL---RRPYFRKMENQDALVCISESVPEPIVEWVL-CDSQ 179 (423)
T ss_dssp ----CE---EEEEEEECSSSSCEEEEEEESSCCEEEEEE-C---
T ss_pred Cccccc---cCCcEeccCCceEEEEEEeeecCCeEEEEE-CCCC
Confidence 554321 112235568888999999999999999999 5443
No 280
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.21 E-value=3.6e-11 Score=81.83 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCCcccCC---CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEP---IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~---~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+... +..+.+.+|+++.|.|.+.|.|.|. +.|+|++
T Consensus 14 ~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~G~P~P~-------i~W~k~g 56 (139)
T 1gxe_A 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPT-------VIWQKAI 56 (139)
T ss_dssp CCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCE-------EEEEEEC
T ss_pred CCceEecCcCCCCCEEEeCCCeEEEEEEEEEcCCCe-------EEEEECC
Confidence 34444433 6789999999999999999999988 9999965
No 281
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=99.21 E-value=1.3e-10 Score=76.15 Aligned_cols=82 Identities=21% Similarity=0.439 Sum_probs=45.7
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeeceeeeCCceEEEEc--CCceEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHNVITQNPRISLTYN--DHRSWFLN 93 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 93 (215)
+...|..+.+.+|++|+|.|.+.+.. +. +.|+|... .. ++..... .....|+.+..+ ....++|.
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~-------v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~ 74 (113)
T 1h5b_A 4 VEQSPSALSLHEGTDSALRCNFTTTM-RS-------VQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLH 74 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCC-SE-------EEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEE
T ss_pred eEECCCEEEEecCCcEEEEEEECCCC-ce-------EEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEE
Confidence 34456788999999999999998643 33 99998642 21 1111111 123345544332 22344555
Q ss_pred EccceecCCEEEEEEcc
Q psy5838 94 IKNVQESDRGWYMCQVN 110 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~ 110 (215)
|.+++.+|+|.|+|.+.
T Consensus 75 I~~v~~~DsG~Y~C~~~ 91 (113)
T 1h5b_A 75 IRDAQLEDSGTYFCAAE 91 (113)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ECCCChhhCEEEEEEEe
Confidence 55555555555555443
No 282
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=77.03 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=36.2
Q ss_pred ccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
...+|.|...+....+.+|++++|.|.+.+.+.+. +.|++++
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~~~g 49 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR-------ITWLLNG 49 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCC-------CEEEESS
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCe-------EEEEECC
Confidence 34478888888899999999999999999888887 9999943
No 283
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-10 Score=74.13 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=55.1
Q ss_pred eEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEE
Q psy5838 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYM 106 (215)
Q Consensus 27 ~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 106 (215)
+.+.+|+++.|.|.+. .+.+. +.|+| ++..+ ....++.+...+
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~-------v~W~k-~g~~~--------~~~~~~~~~~~~-------------------- 65 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAE-------VRWTK-DGEEV--------VESPALLLQKED-------------------- 65 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCC-------CEEEE-TTEEC--------CCBTTBEEEECS--------------------
T ss_pred EEEEcCCeEEEEEEec-CCCCe-------EEEEE-CCEEC--------ccCCCEEEEECC--------------------
Confidence 6788999999999996 55555 99999 44432 122333333221
Q ss_pred EEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEE
Q psy5838 107 CQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSII 165 (215)
Q Consensus 107 C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~ 165 (215)
....|.|.+++.+|+|.|+|.+.+ ....+.|.|..+|...
T Consensus 66 ----------------~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~~ 105 (113)
T 2cpc_A 66 ----------------TVRRLVLPAVQLEDSGEYLCEIDD---ESASFTVTVTEPPVRI 105 (113)
T ss_dssp ----------------SEEEEEESSCCTTTCEEEEEESSS---CEEEEEEEEECCCCCC
T ss_pred ----------------CEEEEEECCCCcccCEEEEEEEec---CcEEEEEEEecCCchh
Confidence 112467788888888888888865 4556677887777544
No 284
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=99.20 E-value=1.6e-10 Score=76.58 Aligned_cols=86 Identities=16% Similarity=0.323 Sum_probs=51.8
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c-c-EEEeeecee--eeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q-T-ILSIHHNVI--TQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l 92 (215)
+.+...|..+.+.+|++|+|.|.+.+.+.+. +.|+++.. . + ++....... ...+|+..... ...+.|
T Consensus 4 ~~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~L 75 (119)
T 2e27_L 4 IQMTQSPSSLSASLGGKVTITCKANQDIKKK-------IAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGS-GRDYSF 75 (119)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEE
T ss_pred ceeEecCCeEEEeCCCCEEEEEEeCCCCCce-------EEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcc-CCEEEE
Confidence 3455567788999999999999998766555 99999642 1 1 111111111 11345555432 245566
Q ss_pred EEccceecCCEEEEEEccC
Q psy5838 93 NIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~ 111 (215)
.|.+++.+|+|.|.|.+.+
T Consensus 76 ~I~~v~~~DsG~Y~C~~~~ 94 (119)
T 2e27_L 76 SISNLEPEDAATYYCLQYD 94 (119)
T ss_dssp EECSCCGGGCEEEEEEECG
T ss_pred EECCCChHHCEEEEEEEcc
Confidence 6666666666666666554
No 285
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.20 E-value=2.2e-10 Score=86.32 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=23.4
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+..... .. +.|||..
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~-~~----v~W~r~~ 40 (263)
T 3iu4_H 8 GPGLVAPSQSLSITCTVSGFSLSR-YS----VHWVRQP 40 (263)
T ss_dssp CCSEECTTSCEEEEEEEESSCGGG-SC----EEEEEEC
T ss_pred CCEEEcCCCCEEEEEEeccccCCc-eE----EEEEEEC
Confidence 357889999999999997532111 11 8999853
No 286
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=99.19 E-value=2.2e-10 Score=74.30 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=52.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Cc-c-EEEeeecee--eeCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQ-T-ILSIHHNVI--TQNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i 94 (215)
+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|+. +. + ++....... ...+|+..... .....|.|
T Consensus 4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I 75 (107)
T 1i8k_A 4 LTQSPASLSVATGEKVTIRCMTSTDIDDD-------MNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-GTDFVFTI 75 (107)
T ss_dssp EEEECSEEECCTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEE
T ss_pred eEeCCCeEEecCCCCEEEEEEECCCCCCc-------EEEEEECCCCCCEEEEEecCccCCCCCCCEEEEcc-CCEEEEEE
Confidence 44556778899999999999998765555 9999964 22 1 111111111 11356655432 24556777
Q ss_pred ccceecCCEEEEEEccCC
Q psy5838 95 KNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~~ 112 (215)
.+++.+|+|.|.|.+.+.
T Consensus 76 ~~v~~~DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 76 ENTLSEDVGDYYCLQSFN 93 (107)
T ss_dssp SSCCGGGCEEEEEEECSS
T ss_pred CCCCHHHCEEEEEEEeeC
Confidence 777777777777766543
No 287
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.19 E-value=4.2e-10 Score=88.85 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=53.5
Q ss_pred eEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCC-cEEEEEEecc-cCC--CeEEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA-NVTLNCKAQG-YPE--PYVMWR 198 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~--~~i~W~ 198 (215)
+..|.|.+++.+|.|.|.|.+.+. +.....+.+.|..+|.+...... ...+..|+ .+.|.|.+.+ +|. +.+.|.
T Consensus 253 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~ 331 (401)
T 3f8u_B 253 NGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEWE 331 (401)
T ss_dssp EEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEEE
T ss_pred cEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCcCCCCcEEEEE
Confidence 356889999999999999988653 23344567888888887654221 11134676 8999999988 566 689995
Q ss_pred -e
Q psy5838 199 -R 199 (215)
Q Consensus 199 -~ 199 (215)
+
T Consensus 332 ~r 333 (401)
T 3f8u_B 332 LR 333 (401)
T ss_dssp EE
T ss_pred ec
Confidence 7
No 288
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.19 E-value=3.3e-10 Score=83.31 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=23.8
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+..... .. +.|+|+.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~-~~----v~W~rq~ 40 (226)
T 3mlr_H 8 GGEVKQPGQSLKISCKSSGYNFLD-SW----IGWVRQI 40 (226)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGG-SC----EEEEEEC
T ss_pred CCEEEecCCCEEEEEEecCccccC-CE----EEEEEEC
Confidence 368899999999999997532111 11 9999863
No 289
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.81 E-value=1.9e-12 Score=92.42 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=28.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+.+...+. +.|+|+.
T Consensus 3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~-------v~Wyrq~ 38 (185)
T 3c6l_A 3 VRQSPQSLTVWEGETAILNCSYEDSTFDY-------FPWYHQF 38 (185)
Confidence 34556788999999999999997654433 9999964
No 290
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.18 E-value=5.7e-10 Score=83.61 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=23.5
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+..... .. +.|+|..
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~-~~----v~W~r~~ 63 (256)
T 3sob_H 31 GGGLVQPGGSLRLSCAASGFTFTN-SY----IHWVRQA 63 (256)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGG-SC----EEEEEEC
T ss_pred CcEEEcCCCCEEEEEEeeccccCC-CE----EEEEEEC
Confidence 457789999999999997532111 11 8999853
No 291
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.18 E-value=6.2e-11 Score=91.99 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=45.7
Q ss_pred EEeCCcEEEEEEeeccC-CccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEE
Q psy5838 29 VTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107 (215)
Q Consensus 29 ~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 107 (215)
+.+|+++.|.|.+.+.+ .+. +.|+|++ ..+. ..+.++... .+.|.|.+++.+|+|.|+|
T Consensus 140 ~~~G~~v~L~C~~~g~p~~~~-------i~W~k~~-~~l~-------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C 199 (329)
T 3oq3_B 140 THDKYGIDLYCGILYAKHYNN-------ITWYKNN-QELI-------IDGTKYSQS-----GQNLIIHNPELEDSGRYDC 199 (329)
T ss_dssp SSTTTCEEEECCCCSCCCCCE-------EEEEETT-EECC-------CSSSSEEEE-----TTEEEECSCCGGGCEEEEE
T ss_pred EeCCCcEEEEeccCCCCCCce-------EEEEECC-ccCC-------CCCceEecC-----CCEEEEeecChhhCEEEEE
Confidence 45699999999999887 676 9999954 3321 122333332 2489999999999999999
Q ss_pred Ecc
Q psy5838 108 QVN 110 (215)
Q Consensus 108 ~~~ 110 (215)
.+.
T Consensus 200 ~a~ 202 (329)
T 3oq3_B 200 YVH 202 (329)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 292
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=99.18 E-value=1.2e-10 Score=76.01 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=52.8
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c--c-EEEeeece-eeeCCceEEEEcCCceEEE
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q--T-ILSIHHNV-ITQNPRISLTYNDHRSWFL 92 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l 92 (215)
+.+...|..+.+.+|++|+|.|.+.+.+.+. +.|+++.. . . ++...... .....|+..... .....|
T Consensus 5 ~~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~L 76 (111)
T 1i3g_L 5 IVLTQSHKFMSTSVGDRVSITCKASQDVGTA-------VAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGS-GTDFTL 76 (111)
T ss_dssp CCEEESCSEEECCTTCCEEEEEEESSCCTTC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEE
T ss_pred ceEEEeCCEEEEcCCCCEEEEEEeCCCCCCC-------EEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcC-CCEEEE
Confidence 4455667788999999999999998765444 99999742 1 1 22111000 011345555432 245567
Q ss_pred EEccceecCCEEEEEEccCC
Q psy5838 93 NIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~~ 112 (215)
.|.+++.+|+|.|.|.+.+.
T Consensus 77 ~I~~v~~~DsG~Y~C~~~~~ 96 (111)
T 1i3g_L 77 TISNVQSEDLADYFCQQYSS 96 (111)
T ss_dssp EESSCCGGGCSEEEEEECSS
T ss_pred EECCCCHHHCEEEEEEEecC
Confidence 77777776666666666543
No 293
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.17 E-value=3e-10 Score=81.84 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
+...+..+.+.+|++|+|.|.+.+..... +.|||+
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~-------v~Wyrq 37 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYPT-------LFWYVQ 37 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSCCE-------EEEEEE
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCCcE-------EEEEEe
Confidence 45667789999999999999998653333 999996
No 294
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.17 E-value=1.1e-11 Score=79.32 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCcccCCC----CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPI----PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~----~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+|.|...+ ..+.+.+|++++|.|.+.+.+.+. +.|++++
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~-------v~W~~~~ 46 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNG 46 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCE-------EEEEETT
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCE-------EEEEECC
Confidence 56666443 467788999999999999888887 9999943
No 295
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=99.17 E-value=3.2e-10 Score=75.18 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=29.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|+.
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~ 39 (120)
T 1mqk_L 4 LTQTPVSLSASVGETVTITCRASENIYSY-------LAWYQQK 39 (120)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEEC
T ss_pred eEecCCeEEEcCCCcEEEEEEeCCCCCce-------EEEEEEC
Confidence 44556788999999999999998765555 9999964
No 296
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=99.16 E-value=5.6e-10 Score=80.89 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=27.2
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
...+..+.+.+|++++|.|.+.+..... +.|||+.
T Consensus 4 ~q~p~~v~v~~G~~v~L~C~~s~~~~~~-------v~W~rq~ 38 (203)
T 2bnu_A 4 TQIPAALSVPEGENLVLNCSFTDSAIYN-------LQWFRQD 38 (203)
T ss_dssp EEECSEEEEETTCCEEEEEEESCCCEEE-------EEEEEEC
T ss_pred EEcCCEEEEeCCCCEEEEEEECCCCcce-------EEEEEeC
Confidence 3446788999999999999997654333 9999864
No 297
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=73.33 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+.|...|....+.+|+++.|.|.+.+.+.+. +.|+++
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~-------i~W~~~ 40 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH-------YQWFKN 40 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCE-------EEEEET
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCE-------EEEEcC
Confidence 56777888889999999999999999888876 999994
No 298
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.16 E-value=1e-10 Score=89.36 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=20.9
Q ss_pred EEEEcccCCCCCeEEEEEeecC----C-----CcceeeEEEEEcCCeE-EecCCCcceeeecCCcEEEEEEecccCCC--
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD----P-----MRSRQGYLQVVVPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEP-- 193 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~----~-----~~~~~~~l~v~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-- 193 (215)
.|.+...+.++.+.|+|.|.+. + ..+....+.|.++|.. .....+ ..+.+|+.+.|.|.++|.|++
T Consensus 143 ~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P~~~ 220 (291)
T 1mq8_A 143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSE 220 (291)
T ss_dssp EEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------
T ss_pred EEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCC--cCccCCCeEEEEEEcCCCCCCcc
Confidence 4555666666667999999752 1 1234456888877643 222122 257899999999999997544
Q ss_pred -eEEEEeCCCcccc
Q psy5838 194 -YVMWRREDGANLS 206 (215)
Q Consensus 194 -~i~W~~~~~~~~~ 206 (215)
.++|.+ +|+.+.
T Consensus 221 ~~v~w~~-~g~~l~ 233 (291)
T 1mq8_A 221 AQVHLAL-GDQRLN 233 (291)
T ss_dssp --------------
T ss_pred cEEEEEE-CCEecC
Confidence 589999 777665
No 299
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=99.16 E-value=5.1e-11 Score=77.48 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=28.8
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+.+.+.+. +.|+|..
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~ 39 (108)
T 1qfw_M 4 LTQSPKSMSMSVGERVTLSCKASETVDSF-------VSWYQQK 39 (108)
T ss_dssp EEEECSCEECCTTCCEEEEEEESSCCCSC-------EEEEEEC
T ss_pred EEEeCCeEEEcCCCCEEEEeeeCCCCCcE-------EEEEEEC
Confidence 44556778999999999999998765455 9999964
No 300
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=99.15 E-value=7.9e-10 Score=81.22 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=27.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+.+. ... +.|+|+.
T Consensus 4 V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~-------v~Wyrq~ 38 (229)
T 3mbe_C 4 VEQNPPALSLYEGADSGLRCNFSTT-MKS-------VQWFQQN 38 (229)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CSC-------EEEEEEC
T ss_pred EEEcCCEEEEEcCCCEEEEEEEeCC-CcE-------EEEEEEC
Confidence 3445677899999999999999876 333 9999863
No 301
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=99.15 E-value=1.2e-10 Score=77.90 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=48.2
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccC----CccceeeeEEEEEEecCC--cc-EEEeeecee--eeCCceEEEEcCCc
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLK----GFKGLRIGWQVAWVRVDT--QT-ILSIHHNVI--TQNPRISLTYNDHR 88 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~----~~~~~~~~~~v~W~~~~~--~~-~~~~~~~~~--~~~~~~~~~~~~~~ 88 (215)
+.+..+|..+.+.+|++|+|.|.+.+.+ .+. +.|+|... .+ ++....... ....|+..... ..
T Consensus 2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~ 73 (126)
T 4ffy_L 2 IVLTQSPASLAVSLGQRATISCRASESVDHYGNSF-------IYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGS-ET 73 (126)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSCCEETTEEC-------EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TT
T ss_pred CcEEeCCCeEEEeCCCCEEEEEecCCCcccCCCce-------EEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecC-CC
Confidence 3455667789999999999999998654 233 89999631 11 111111100 11345544422 23
Q ss_pred eEEEEEccceecCCEEEEEEccC
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
...|.|.+++.+|+|.|+|.+.+
T Consensus 74 ~~sL~I~~v~~~DsG~Y~C~~~~ 96 (126)
T 4ffy_L 74 DFTLTIDSVETDDAATYYCQQNN 96 (126)
T ss_dssp EEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEECCCCHHHCEEEEEEEec
Confidence 44555555555555555555443
No 302
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=99.15 E-value=1.2e-10 Score=77.15 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=31.2
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~ 63 (215)
...+..++..+.+.+|++|+|.|.+.+. +.+. +.|+|+.+
T Consensus 7 ~~~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~-------v~W~r~~~ 47 (120)
T 2yz1_A 7 ELKVTQPEKSVSVAAGDSTVLNCTLTSLLPVGP-------IKWYRGVG 47 (120)
T ss_dssp CCCEECCSSEEEECTTCCEEECCEESCCCSCCC-------EEEEESSS
T ss_pred cEEEECCCceEEEeCCCCEEEEeEECCCCCCcE-------EEEEcCCC
Confidence 3456667788999999999999999865 3344 99999753
No 303
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.15 E-value=5.9e-12 Score=91.99 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=46.8
Q ss_pred EEEcccCCCCCeEEEEEeecCCCc-ceeeEEE---EEcCCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeEEEEeC
Q psy5838 127 LNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQ---VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYVMWRRE 200 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~ 200 (215)
|.|.+++.+|+|.|+|.+.+.... .....+. +..+|.+..... ....+..|+.+.|.|.+.|+ |+ +.+.|++
T Consensus 68 L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k- 145 (214)
T 1ow0_A 68 LPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP-PSEELALNELVTLTCLARGFSPKDVLVRWLQ- 145 (214)
T ss_dssp CTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECC-CTTTTTSSSEEEEEEEEEEESSSCCEEEEEE-
T ss_pred EEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCC-CHHHhccCCceEEEEEEeeeECCCcEEEEEE-
Confidence 445555566667777776543211 1112221 235666554322 22235678999999999985 54 4899999
Q ss_pred CCccccc
Q psy5838 201 DGANLSY 207 (215)
Q Consensus 201 ~~~~~~~ 207 (215)
||..+..
T Consensus 146 ~g~~l~~ 152 (214)
T 1ow0_A 146 GSQELPR 152 (214)
T ss_dssp TTEECCG
T ss_pred CCEECCC
Confidence 7776643
No 304
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=90.29 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=59.7
Q ss_pred EEEEEcccCCCCCeEEEEEeecCCCc------ceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCC--eEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDPMR------SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP--YVM 196 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~ 196 (215)
..|.|.+++.+|+|.|+|.+.+.... ...+.|.|..+|...... .+...+.+|+.+.|.|.+.+.|++ .+.
T Consensus 74 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~ 152 (327)
T 2wng_A 74 FSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLK 152 (327)
T ss_dssp CCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred eEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEE
Confidence 45999999999999999999764321 234577887766543221 223457899999999999998765 899
Q ss_pred EEeCCCccccc
Q psy5838 197 WRREDGANLSY 207 (215)
Q Consensus 197 W~~~~~~~~~~ 207 (215)
|++ +|..+..
T Consensus 153 W~k-~g~~l~~ 162 (327)
T 2wng_A 153 WFK-NGNELSD 162 (327)
T ss_dssp EEE-TTEECCC
T ss_pred EEE-CCEEccc
Confidence 999 7776653
No 305
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=99.14 E-value=7.7e-10 Score=75.09 Aligned_cols=41 Identities=27% Similarity=0.448 Sum_probs=28.4
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
.+..++..+.+.+|++|+|.|.+.+.+...... +.|++++.
T Consensus 8 ~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~----v~W~~~~~ 48 (139)
T 1pko_A 8 RVIGPGHPIRALVGDEAELPCRISPGKNATGME----VGWYRSPF 48 (139)
T ss_dssp EEECCSSCEEEETTSCEEEEEEEESCCCCTTSE----EEEEEC--
T ss_pred EEECCCCCEEEEeCCCEEEeeEccCCCCCCceE----EEEEECCC
Confidence 344566689999999999999998654311121 99999654
No 306
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=99.14 E-value=4.1e-10 Score=77.18 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+...+..+.+.+|++|+|.|.+.+.+.+. +.|||+.
T Consensus 15 ~~~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~-------v~Wyrq~ 54 (146)
T 2yc1_B 15 SEIVLTQSPATLSVSPGERATLSCRASQSVRSY-------LAWYQQK 54 (146)
T ss_dssp CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC-------EEEEEEC
T ss_pred ccceEEEeCCEEEEecCCCEEEEEEECCCCCCE-------EEEEEEC
Confidence 345666777889999999999999998665444 9999964
No 307
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=78.04 Aligned_cols=42 Identities=12% Similarity=0.357 Sum_probs=30.0
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
..+..++..+.+..|++|+|+|.+.....+.... +.|+|.+.
T Consensus 6 ~sVt~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~----V~W~k~~~ 47 (125)
T 4gos_A 6 HSITVTTVASAGNIGEDGILSCTFEPDIKLSDIV----IQWLKEGV 47 (125)
T ss_dssp CCSCEEEECEEEETTSCEEEEEEECCCSCGGGCE----EEEEETTC
T ss_pred eEEEccCceEEEeCCCCEEEEEEEcCCcccCcEE----EEEEEecc
Confidence 3444555678889999999999997554444333 89999643
No 308
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=99.13 E-value=3.7e-10 Score=81.80 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=45.7
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeeceeeeCCceEEEEc-CCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHNVITQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i 94 (215)
+...|..+.+.+|++|+|.|.+.+..... +.|+|+.. +. ++..........+|+....+ ......|.|
T Consensus 5 V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~-------v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I 77 (208)
T 4ei6_A 5 VQQSPESLSVPEGGMASLNCTSSDRNFQY-------FWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHI 77 (208)
T ss_dssp EEEECSEEEEETTCCEECEEEECCTTEEE-------EEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEE
T ss_pred EEEeCCEEEEECCCCEEEEEEEcCCCCce-------EEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEE
Confidence 45556788999999999999998653222 89999642 11 22221111113455555432 223445555
Q ss_pred ccceecCCEEEEE
Q psy5838 95 KNVQESDRGWYMC 107 (215)
Q Consensus 95 ~~~~~~d~G~Y~C 107 (215)
.+++.+|+|.|.|
T Consensus 78 ~~lq~~DsG~Y~C 90 (208)
T 4ei6_A 78 RDSQPSDSALYFC 90 (208)
T ss_dssp CSCCGGGCEEEEE
T ss_pred EeCcccCCCcEEE
Confidence 5555555555555
No 309
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=99.13 E-value=2.5e-10 Score=76.47 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=29.7
Q ss_pred cccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~ 63 (215)
.+..++..+.+.+|++|+|.|.+.+. +.+. +.|||+.+
T Consensus 5 ~v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~-------v~W~r~~~ 43 (127)
T 2jju_A 5 QVIQPEKSVSVAAGESATLRCAMTSLIPVGP-------IMWFRGAG 43 (127)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCC-------EEEEECSS
T ss_pred EEEeeCCeEEEeCCCCEEEEEEEeCCCCCCE-------EEEEecCC
Confidence 44556778999999999999999865 3344 99999753
No 310
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=99.12 E-value=6.6e-10 Score=73.07 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=47.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC-cc---EEEeeece-e---eeCCceEEEEc-CCce
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT-QT---ILSIHHNV-I---TQNPRISLTYN-DHRS 89 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~~-~---~~~~~~~~~~~-~~~~ 89 (215)
+...|..+.+.+|++|+|.|.+... .... +.|+|... .. ++...... . ...+|+.+..+ ....
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 75 (116)
T 1tvd_A 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPD-------LFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKA 75 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCC-------EEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTE
T ss_pred eecCCCcEEEecCCeEEEEeEeEcCCCCcE-------EEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCE
Confidence 4456778999999999999999754 3333 99998642 21 22111110 0 11455555442 2234
Q ss_pred EEEEEccceecCCEEEEEEcc
Q psy5838 90 WFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.+|.|.+++.+|+|.|.|.+.
T Consensus 76 ~~L~I~~~~~~DsG~Y~C~~~ 96 (116)
T 1tvd_A 76 FHLVISPVRTEDSATYYCAFT 96 (116)
T ss_dssp EEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEccCChHHCEEEEEEEe
Confidence 455555555555555555443
No 311
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G
Probab=99.12 E-value=1.2e-09 Score=80.03 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=47.2
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeeec-eeeeC-CceEEEEc-CCceEE
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHHN-VITQN-PRISLTYN-DHRSWF 91 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~-~~~~~-~~~~~~~~-~~~~~~ 91 (215)
.+...+..+.+.+|++|+|.|.+....... +.|||+. +.. ++..... ..... +|+....+ ......
T Consensus 11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~-------v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~s 83 (226)
T 3tjh_C 11 SVTQPDARVTVSEGASLQLRCKYSYSATPY-------LFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFH 83 (226)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEESSCEE-------EEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEE
T ss_pred EEEEeCCEEEEEcCCCEEEEEEEecCCCCe-------EEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEE
Confidence 455667788999999999999998653333 9999963 221 2221111 11223 56655432 234455
Q ss_pred EEEccceecCCEEEEE
Q psy5838 92 LNIKNVQESDRGWYMC 107 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C 107 (215)
|.|.+++.+|+|.|+|
T Consensus 84 LtI~~lq~~DSG~YyC 99 (226)
T 3tjh_C 84 LRKASVHWSDSAVYFC 99 (226)
T ss_dssp EEESSCCGGGCEEEEE
T ss_pred EEEecCCcccCCCEEE
Confidence 5555555555555555
No 312
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=99.12 E-value=5.3e-10 Score=72.96 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC----CccceeeeEEEEEEecC-Ccc--EEEeeecee--eeCCceEEEEcCCceE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK----GFKGLRIGWQVAWVRVD-TQT--ILSIHHNVI--TQNPRISLTYNDHRSW 90 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~----~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (215)
+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +.. ++....... ....|+..... ....
T Consensus 4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~ 75 (111)
T 1j05_L 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGF-------LHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-RTDF 75 (111)
T ss_dssp EEEECSEEECCTTSCEEEEEEESSCCEETTEEC-------EEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE-TTEE
T ss_pred EEEeCCEEEEeCCCCEEEEeecCCCcccCCCce-------EEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEcc-CCEE
Confidence 44456678899999999999998654 233 9999964 221 111111111 11356655432 2456
Q ss_pred EEEEccceecCCEEEEEEccCC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
+|.|.+++.+|+|.|.|.+.+.
T Consensus 76 ~L~I~~v~~~DsG~Y~C~~~~~ 97 (111)
T 1j05_L 76 TLIIDPVEADDVATYYCQQTNE 97 (111)
T ss_dssp EEEESSCCGGGCEEEEEEECSS
T ss_pred EEEECCCCcccCEEEEEEEecC
Confidence 6777777777777777766543
No 313
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.12 E-value=1.1e-09 Score=83.73 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=55.9
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc-cee
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN-VQE 99 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~ 99 (215)
...+..+.+..|+.+.|.|.+.+.+.+. +.|+++ +..+ ....++.+.... ....|.|.+ +..
T Consensus 108 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~-------i~W~~~-~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~ 170 (305)
T 2nzi_A 108 LEGMGAVHALRGEVVSIKIPFSGKPDPV-------ITWQKG-QDLI--------DNNGHYQVIVTR-SFTSLVFPNGVER 170 (305)
T ss_dssp HHSSCCEEEETTCCEEEEEEEEEESCCE-------EEEEES-SSBC--------CSSSSCEEEECS-SEEEEEETTCCCS
T ss_pred ccccccEEecCCCEEEEEEEECCCCCCE-------EEEEEC-CEEC--------CCCCcEEEEEcC-CceEEEEecCCcc
Confidence 3334678888999999999999988887 999994 4433 233455444333 456899999 999
Q ss_pred cCCEEEEEEccC
Q psy5838 100 SDRGWYMCQVNT 111 (215)
Q Consensus 100 ~d~G~Y~C~~~~ 111 (215)
+|+|.|+|.|.+
T Consensus 171 ~d~G~Y~C~a~N 182 (305)
T 2nzi_A 171 KDAGFYVVCAKN 182 (305)
T ss_dssp TTCEEEEEEEEE
T ss_pred CccEEEEEEEEe
Confidence 999999999874
No 314
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=73.90 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCcccCCC---CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 17 MPHFAEPI---PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 17 ~p~~~~~~---~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
.+.|.... ..+.+.+|++++|.|.+. .+.+. +.|+|+ +.
T Consensus 8 p~~~~~~~~~~~~~~v~~G~~v~L~C~~~-~p~~~-------v~W~k~-g~ 49 (102)
T 2eo1_A 8 KVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTE-------VTWYKD-GK 49 (102)
T ss_dssp CCCSCSSCCSCEEEEEETTCCEEECCBCS-CSSSC-------CEEEET-TE
T ss_pred CEEecCcCCCcccEEEeCCCcEEEEEEec-CCCCc-------eEEEEC-CE
Confidence 44455442 456889999999999998 55565 999994 44
No 315
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.11 E-value=3.8e-10 Score=73.19 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=34.0
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
....+|.|...+....+.+|++++|.|.+.+.+ .+. +.|++++
T Consensus 6 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~-------i~W~k~~ 50 (112)
T 3so5_A 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMT-------FAWXXDN 50 (112)
T ss_dssp --CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCE-------EEEEETT
T ss_pred CCCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEE-------EEEccCC
Confidence 345678898888899999999999999998643 344 9999953
No 316
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=99.11 E-value=5.8e-10 Score=73.40 Aligned_cols=84 Identities=15% Similarity=0.292 Sum_probs=48.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC-cc---EEEee--eceeeeCCceEEEE-cCCceEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT-QT---ILSIH--HNVITQNPRISLTY-NDHRSWF 91 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~-~~---~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 91 (215)
+...|..+.+.+|++|+|.|.+.+. ..+. +.|+++.. .. ++... .......+|+.+.. .......
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 75 (116)
T 1fo0_A 3 VTQTQTSISVMEKTTVTMDCVYETQDSSYF-------LFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75 (116)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCE-------EEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEE
T ss_pred cCcCCCcEEEecCCcEEEEeEecCCCCCeE-------EEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEE
Confidence 4455778999999999999999865 3333 99999642 21 22111 01111235555542 2234455
Q ss_pred EEEccceecCCEEEEEEcc
Q psy5838 92 LNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~ 110 (215)
|.|.+++.+|+|.|.|.+.
T Consensus 76 L~I~~~~~~DsG~Y~C~~~ 94 (116)
T 1fo0_A 76 LIITATQIEDSAVYFCAMR 94 (116)
T ss_dssp EEECSCCGGGCEEEEEEEE
T ss_pred EEECCCChhhCEEEEEEEE
Confidence 6655555555555555443
No 317
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=99.11 E-value=8.6e-10 Score=72.30 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=51.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCC------ccceeeeEEEEEEecCC-c-c--EEEeeece-eeeCCceEEEEcCCc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKG------FKGLRIGWQVAWVRVDT-Q-T--ILSIHHNV-ITQNPRISLTYNDHR 88 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~------~~~~~~~~~v~W~~~~~-~-~--~~~~~~~~-~~~~~~~~~~~~~~~ 88 (215)
+...|..+.+.+|++|+|.|.+.+.+. +. +.|+|+.. . + ++...... .....|+..... ..
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~-------v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~ 75 (114)
T 1eeq_A 4 LTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNY-------LAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGS-GT 75 (114)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTTTEEC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TT
T ss_pred eEecCCeEEEcCCCeEEEEEEcCCCccccccCCcc-------EEEEEECCCCCCEEEEEecCccCCCCCCCEEEeec-CC
Confidence 445567889999999999999986542 33 99999642 2 1 22111000 011356655432 24
Q ss_pred eEEEEEccceecCCEEEEEEccCC
Q psy5838 89 SWFLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 89 ~~~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
..+|.|.+++.+|+|.|.|.+.+.
T Consensus 76 ~~~L~I~~v~~~DsG~Y~C~~~~~ 99 (114)
T 1eeq_A 76 DFTLTISSLQAEDVAVYYCQQYYS 99 (114)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEECCCCcccCEEEEEEEeeC
Confidence 556777777777777777766543
No 318
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.10 E-value=1.1e-09 Score=77.84 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=55.8
Q ss_pred EEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC--eEEEEeCCC
Q psy5838 127 LNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP--YVMWRREDG 202 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~i~W~~~~~ 202 (215)
|.|.+++. | |.|.|.+... ......+.|.|..+|...... +....+.+|+.++|.|.+.| .|.+ .|+|++ ++
T Consensus 52 l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~-~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~k-g~ 127 (185)
T 1iam_A 52 YELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELA-PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GE 127 (185)
T ss_dssp EEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TT
T ss_pred EEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEc-cCCccccCCCcEEEEEEcCCccCCCCcEEEEEe-CC
Confidence 56777763 3 8999998654 345667789998888766543 33344889999999999988 5655 489999 66
Q ss_pred cccc
Q psy5838 203 ANLS 206 (215)
Q Consensus 203 ~~~~ 206 (215)
+.+.
T Consensus 128 ~~l~ 131 (185)
T 1iam_A 128 KELK 131 (185)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 6654
No 319
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Probab=99.09 E-value=7.8e-09 Score=74.99 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=45.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCC-c--c-EEEeeeceeeeCCceEEEEc-CCceEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDT-Q--T-ILSIHHNVITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 93 (215)
+.. +..+.+.+|++++|.|.+.+ ..... +.|||+.. . . ++.... .....+|+....+ ......|.
T Consensus 3 v~Q-p~~~~v~~G~~v~L~C~~s~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~-~~~~~~Rf~~~~~~~~~~~sL~ 73 (206)
T 1kgc_D 3 TTQ-PNSMESNEEEPVHLPCNHSTISGTDY-------IHWYRQLPSQGPEYVIHGLT-SNVNNRMASLAIAEDRKSSTLI 73 (206)
T ss_dssp EEC-CSEEEEETTSCEEEEEEESCCCTTCC-------EEEEEECTTSCCEEEEEESS-SSEECSSEEEEECTTSSEEEEE
T ss_pred EEC-CCeEEEcCCCCEEEEEEEcCCCCCcc-------EEEEEECCCCCcEEEEEECC-CCccCCCEEEEEcCCCCEEEEE
Confidence 344 67889999999999999976 32233 99999642 2 1 222211 1122456655542 22344555
Q ss_pred EccceecCCEEEEEE
Q psy5838 94 IKNVQESDRGWYMCQ 108 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~ 108 (215)
|.+++.+|+|.|+|.
T Consensus 74 I~~~~~~Dsg~Y~C~ 88 (206)
T 1kgc_D 74 LHRATLRDAAVYYCI 88 (206)
T ss_dssp ESSCCGGGCEEEEEE
T ss_pred ECCCCcccCccEEEE
Confidence 555555554444443
No 320
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=99.09 E-value=4.4e-10 Score=73.48 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=28.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.+...+. +.|+++.
T Consensus 3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~-------v~W~rq~ 38 (112)
T 2z35_A 3 VTQTGGQVALSEEDFLTIHCNYSASGYPA-------LFWYVQY 38 (112)
T ss_dssp EECSCSEEEEETTCCEEECCEEECSSCCE-------EEEEEEC
T ss_pred eEeCCCcEEEcCCCCEEEEEEECCCCCCe-------EEEEEEC
Confidence 34556789999999999999998664444 9999964
No 321
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=99.09 E-value=3.6e-10 Score=73.93 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=27.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+.....+. +.|+|..
T Consensus 4 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~-------v~W~rq~ 39 (112)
T 1fo0_B 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPW-------MSWYQQD 39 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEESCTTCCE-------EEEEEEC
T ss_pred EEeCCCeEEEecCCcEEEEEEeCCCCCce-------EEEEEEC
Confidence 34456678899999999999997544444 9999964
No 322
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=99.09 E-value=6.2e-10 Score=72.87 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=51.4
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC-----CccceeeeEEEEEEecCC-c-c-EEEeeecee--eeCCceEEEEcCCce
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK-----GFKGLRIGWQVAWVRVDT-Q-T-ILSIHHNVI--TQNPRISLTYNDHRS 89 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~-----~~~~~~~~~~v~W~~~~~-~-~-~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (215)
+...|..+.+.+|++|+|.|.+.+.. .+. +.|++... . + ++....... ....|+..... ...
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~ 75 (113)
T 1dlf_L 4 MTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTY-------LHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS-GTD 75 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTE
T ss_pred EEEeCCEEEEcCCCCEEEEEEccccccccCCCce-------EEEEEECCCCCCeEEEEecCccCCCCCCCEEEEcc-CCE
Confidence 44556788999999999999998654 233 99998642 1 1 111111111 11356655432 245
Q ss_pred EEEEEccceecCCEEEEEEccCC
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 76 ~~L~I~~v~~~DsG~Y~C~~~~~ 98 (113)
T 1dlf_L 76 FTLKISRVEAEDLGVYFCSQSTH 98 (113)
T ss_dssp EEEEECSCCGGGCEEEEEEECSS
T ss_pred EEEEECCCChHHCEEEEEEEecC
Confidence 56777777777777777766543
No 323
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=99.09 E-value=4.5e-10 Score=74.07 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=27.4
Q ss_pred EEEEcccCCCCCeEEEEEeec--CCCcceeeEEEEEcCCeEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNT--DPMRSRQGYLQVVVPPSII 165 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~--~~~~~~~~~l~v~~~p~~~ 165 (215)
+|.|.+++.+|+|.|+|.+.. .+.....+.|.|..||.+.
T Consensus 72 sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~~ 113 (117)
T 3q0h_A 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113 (117)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC----
T ss_pred EEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCccc
Confidence 477888888899999998743 3455566778888887543
No 324
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.9e-11 Score=75.38 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=35.2
Q ss_pred cccCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.....|.|...+....+.+|++++|.|.+.+.+.+. +.|+|++
T Consensus 6 ~~~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~-------v~W~k~~ 48 (96)
T 2ens_A 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQ-------IHWMKDG 48 (96)
T ss_dssp CCCCSCCCEEESTTSEECTTCEEEEECCCSSCSSCC-------CCCEESS
T ss_pred CCCCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCE-------EEEEECC
Confidence 344467788888888899999999999999887776 8999943
No 325
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.09 E-value=4.4e-10 Score=79.70 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=52.8
Q ss_pred EEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecccCCCeEEEEeCCCcc
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGAN 204 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~ 204 (215)
..|.|.+++.+|+|.|+|.+.+.. ..+.+.|.. +.. +....+.+|+++.|.|.+.+.|.+.+.|++ ++..
T Consensus 68 ~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~l~V~~---~~~---~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~-~~~~ 137 (184)
T 2ny1_B 68 FPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFG---LTA---NSDTHLLQGQSLTLTLESPPGSSPSVQCRS-PRGK 137 (184)
T ss_dssp CCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEE---EEE---SSCSEEETTCCEEEEEECCTTCCCEEEEEC-TTSC
T ss_pred EEEEEecCCHHHCEEEEEEEEcCC---CcEEEEEEE---ecC---CCCceeecCCCEEEEEEcCCCCCCEEEEEe-CCCc
Confidence 349999999999999999996532 244555552 121 223457899999999999999999999999 5543
No 326
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=99.09 E-value=4.1e-10 Score=73.51 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=48.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccE-EEeeeceeeeCCceEEEEc-CCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTI-LSIHHNVITQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i 94 (215)
+...|..+.+.+|++|+|.|.+.+.. .+. +.|+|+. +... ..+ ..+.|+....+ ....+.|.|
T Consensus 3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~I 70 (111)
T 2ywz_A 3 VDQTPRTITKETGESLTIKCVLKDHSCGLSS-------TTWYRTQLGSTNEKTI-----SIGGRYDETVDKGSKSFSLRI 70 (111)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCE-------EEEEEEETTCCCCEEC-----CSBTTEEEEEETTTTEEEEEE
T ss_pred eEECCCcEEEccCCCEEEEeEECCCCCCCCE-------EEEEEeCCCCCceEee-----EeCCCEEEEEeCCCCEEEEEE
Confidence 44556788999999999999998653 334 9999963 2111 000 12345554322 224556666
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|.|.+.+
T Consensus 71 ~~v~~~DsG~Y~C~~~~ 87 (111)
T 2ywz_A 71 SDLRVEDSGTYKCQADY 87 (111)
T ss_dssp CSCCGGGCEEEEEEEEE
T ss_pred CCCChhcCEEEEEEEEc
Confidence 66666666666665543
No 327
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.08 E-value=4.1e-09 Score=83.21 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+....+.+|+++.|.|.+.+.+.+. +.|+++ +..+.. ....++.+...+ ....|.|.
T Consensus 99 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-------i~W~~~-g~~l~~------~~~~~~~~~~~~-~~~~L~i~ 163 (389)
T 2jll_A 99 YAPKFISNQTIYYSWEGNPINISCDVKSNPPAS-------IHWRRD-KLVLPA------KNTTNLKTYSTG-RKMILEIA 163 (389)
T ss_dssp EEEEECCSCCEEEECTTCCEEEEECEEEESCCE-------EEEEET-TEESSC------TTCTTEEEEECS-SCEEEEEC
T ss_pred eCCEEecCcceEEeccCCEEEEEEEEEecCCCe-------EEEEEC-CccCCc------ccCceEEEeccC-CEEEEEEC
Confidence 356777666666788999999999999988777 999994 443210 111244443332 55689999
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
++..+|+|.|+|.|.+
T Consensus 164 ~~~~~d~G~Y~C~a~N 179 (389)
T 2jll_A 164 PTSDNDFGRYNCTATN 179 (389)
T ss_dssp CCSTTSSEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEc
Confidence 9999999999999863
No 328
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.08 E-value=1e-09 Score=72.62 Aligned_cols=100 Identities=16% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCCceEEEeCCcEEEEEEeeccCC--ccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceec
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQES 100 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 100 (215)
++..+.+.+|++++|.|.+.+.+. +. +.|++++.... . .......+........ .
T Consensus 14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~-------i~W~~~~~~~~-~---~~~~~~~~~~~~~~~~----~-------- 70 (122)
T 3s35_X 14 PSHGIELSVGEKLVLNCTARTELNVGID-------FNWEYPSSKHQ-H---KKLVNRDLKTQSGSEM----K-------- 70 (122)
T ss_dssp SCSCEEEEETCCEEEEEEEEECTTCCCE-------EEEECSCTTCC-H---HHHBCCSCCEEEETTE----E--------
T ss_pred CCCCEEEecCCeEEEEEEEEcCCCCcEE-------EEEECCCcccC-C---ceeeeeccccccCCce----e--------
Confidence 445678999999999999998443 44 89999554210 0 0000011111110000 0
Q ss_pred CCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEe
Q psy5838 101 DRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIID 166 (215)
Q Consensus 101 d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~ 166 (215)
.....|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+..
T Consensus 71 ---------------------~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~i~~ 116 (122)
T 3s35_X 71 ---------------------KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAF 116 (122)
T ss_dssp ---------------------EEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEECC--
T ss_pred ---------------------eEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCeEEe
Confidence 01124778888888888888888653 4445666788877776654
No 329
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=99.08 E-value=7.2e-10 Score=72.07 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCceEEEeCCcEEEEEE-eeccC-CccceeeeEEEEEEecCCccEEEeeec-ee--eeCCceEEEE-cCCceEEEEEccc
Q psy5838 24 IPNVTVTVGRDALLACV-VDNLK-GFKGLRIGWQVAWVRVDTQTILSIHHN-VI--TQNPRISLTY-NDHRSWFLNIKNV 97 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~-~~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~--~~~~~~~~~~-~~~~~~~l~i~~~ 97 (215)
|..+.+.+|++|+|.|. +.+.+ .+. +.|+|....+...+... .. ...+|+.... ......+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~-------v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 79 (109)
T 1pew_A 7 PHSVSESPGKTVTISCTRSSGNIASNY-------VQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGL 79 (109)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSC-------CEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCCCCCCcc-------EEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCC
Confidence 56889999999999999 76543 233 89999762221111110 00 1135555553 2234456666666
Q ss_pred eecCCEEEEEEccC
Q psy5838 98 QESDRGWYMCQVNT 111 (215)
Q Consensus 98 ~~~d~G~Y~C~~~~ 111 (215)
+.+|+|.|.|.+.+
T Consensus 80 ~~~DsG~Y~C~~~~ 93 (109)
T 1pew_A 80 KTEDEADYYCQSYD 93 (109)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ChhhCEEEEEEEEe
Confidence 66666666665543
No 330
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.08 E-value=5.4e-10 Score=71.08 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=28.4
Q ss_pred cCCCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~ 62 (215)
...+..+.+.+|++++|.|.+. +.+.+. +.|+|++
T Consensus 14 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~-------v~W~k~~ 49 (98)
T 1gl4_B 14 VEEQRSQSVRPGADVTFICTAKSKSPAYT-------LVWTRLH 49 (98)
T ss_dssp ECSCCEEEECTTCCEEEEEEEEESSSCCE-------EEEEEGG
T ss_pred EeCCCCeEEecCCCEEEEEeCCCCCCCcE-------EEEEeCC
Confidence 3446778899999999999998 567776 9999953
No 331
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Probab=99.08 E-value=3.8e-09 Score=76.96 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=28.6
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVD 62 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~ 62 (215)
.+...+..+.+.+|++|+|.|.+.+.... . +.|||+.
T Consensus 5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~-------v~Wyrq~ 42 (211)
T 2ak4_D 5 KVTQAQTEISVVEKEDVTLDCVYETRDTTYY-------LFWYKQP 42 (211)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCE-------EEEEEEC
T ss_pred ceEEeCCEEEEecCCCEEEEEEecCCcCcee-------EEEEEEC
Confidence 35556778999999999999999764332 3 9999974
No 332
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=99.07 E-value=7.6e-10 Score=74.71 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=47.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
...+...|..+.+.+|++|+|.|.+.+. +. +.|+|+. +..+..+. ....|+....++ ....|.|.
T Consensus 17 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~--~~-------v~W~r~~~g~~~~~l~----~~~~r~~~~~~~-~~~~L~I~ 82 (133)
T 3khq_A 17 CSQIWQHPRFAAKKRSSMVKFHCYTNHS--GA-------LTWFRKRGSQQPQELV----SEEGRIVQTQNG-SVYTLTIQ 82 (133)
T ss_dssp CCSEEEECSEEEECTTCCEEEEEEESSS--SC-------EEEEEECTTSCCEECC----CTTTTEEEEEET-TEEEEEEC
T ss_pred CCceEEcCceEEEeCCCeEEEEEEeCCC--CE-------EEEEEeCCCCCCEEEE----EeCCCEEEEcCC-CEEEEEEC
Confidence 3456677888999999999999999876 44 9999963 22211100 124555554332 33445555
Q ss_pred cceecCCEEEEEEc
Q psy5838 96 NVQESDRGWYMCQV 109 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~ 109 (215)
+++.+|+|.|+|.+
T Consensus 83 ~~~~~DsG~Y~C~a 96 (133)
T 3khq_A 83 NIQYEDNGIYFCKQ 96 (133)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred CCChHHCEEEEEEE
Confidence 55444444444443
No 333
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.07 E-value=3.5e-09 Score=79.85 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=47.0
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeec------eeeeCCceEEEEcC-CceEEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHN------VITQNPRISLTYND-HRSWFLN 93 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~------~~~~~~~~~~~~~~-~~~~~l~ 93 (215)
..+.+.+|++|+|.|.+.+..... . .+.|+++.. .. ++..... .....+|+.+..+. ....+|.
T Consensus 31 ~~~~~~~G~~v~L~C~~s~~~~~~-~----~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 105 (267)
T 3u1s_H 31 GAEVKKPGSSVKVSCKASGNSFSN-H----DVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYME 105 (267)
T ss_dssp CCEEECTTCCEEEEEEEGGGGGGT-S----EEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred CCEEEeCCCcEEEEEEeeCCccCC-C----EEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEE
Confidence 357899999999999997532111 1 189998632 11 1111110 01123566665543 2456677
Q ss_pred EccceecCCEEEEEEc
Q psy5838 94 IKNVQESDRGWYMCQV 109 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~ 109 (215)
|.+++.+|+|.|+|.+
T Consensus 106 I~~v~~~DsG~Y~C~~ 121 (267)
T 3u1s_H 106 LRGLTADDTAIYYCLT 121 (267)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ECCCChhhCEEEEEEE
Confidence 7777777777777754
No 334
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.07 E-value=5e-09 Score=76.23 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=46.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEE-eeeceeeeCCceEEEEc-CCceEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILS-IHHNVITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~ 93 (215)
+...+..+.+.+|++|+|.|.+.+..... +.|||+. +.. ++. .........+|+....+ ....+.|.
T Consensus 6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~ 78 (210)
T 2eys_A 6 VEQSPQSLIILEGKNCTLQCNYTVSPFSN-------LRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLH 78 (210)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSSCCE-------EEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEE
T ss_pred EEEeCCEEEEecCCCEEEEEEECCCCCCe-------EEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEE
Confidence 44556788999999999999998655444 9999964 221 222 11111122455555432 22344555
Q ss_pred EccceecCCEEEEEE
Q psy5838 94 IKNVQESDRGWYMCQ 108 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~ 108 (215)
|.+++.+|+|.|+|.
T Consensus 79 I~~~~~~Dsg~Y~C~ 93 (210)
T 2eys_A 79 ITASQLSDSASYICV 93 (210)
T ss_dssp ESSCCGGGCEEEEEE
T ss_pred EccCCcccCceEEEE
Confidence 555555555555543
No 335
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=99.07 E-value=7.3e-10 Score=74.02 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=28.2
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEec
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRV 61 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~ 61 (215)
.+...|..+.+.+|++++|.|.+.+.. .+. +.|||+
T Consensus 2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~-------v~Wyrq 39 (126)
T 3moq_A 2 WVDQTPRTATKETGESLTINCVLRDASFELKD-------TGWYRT 39 (126)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCSSCCCE-------EEEEEE
T ss_pred ceEECCceEEEeCCCCEEEEEEeecCccCCce-------EEEEEe
Confidence 345667789999999999999998652 233 899995
No 336
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=99.06 E-value=1.6e-09 Score=70.78 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~ 62 (215)
.|..+.+.+|++|+|.|.+..... .. +.|+++.
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~~~~ 40 (113)
T 1zox_A 7 GPEEVSGQEQGSLTVQCRYTSGWKDYK-------KYWCQGV 40 (113)
T ss_dssp CCSEEEEETTSCEEEEEEECGGGTTSC-------EEEEESS
T ss_pred CCCEEEEeCCCcEEEEeECCCCcccce-------EEEEeCC
Confidence 356789999999999999986432 23 8999965
No 337
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=99.06 E-value=6.9e-10 Score=72.85 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=52.3
Q ss_pred CCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCc-------cEEEeeece-e-----eeCCceEEEEc-C
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQ-------TILSIHHNV-I-----TQNPRISLTYN-D 86 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~-------~~~~~~~~~-~-----~~~~~~~~~~~-~ 86 (215)
..|..+.+.+|++|+|.|.+.+. .... +.|+|.... .++...... . ...+|+.+..+ .
T Consensus 3 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~-------v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~ 75 (115)
T 2atp_B 3 QTPSSLLVQTNHTAKMSCEVKSISKLTS-------IYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD 75 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSE-------EEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTT
T ss_pred cCCCCEEEcCCCcEEEEEEecCCCCccc-------EEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCC
Confidence 34567889999999999999764 2333 999986421 122221110 0 12467776653 3
Q ss_pred CceEEEEEccceecCCEEEEEEccC
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
....+|.|.+++.+|+|.|.|.+..
T Consensus 76 ~~~~~L~I~~~~~~DsG~Y~C~~~~ 100 (115)
T 2atp_B 76 SRRPFLSIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp SSSCEEEECSCCGGGCEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcc
Confidence 3456788888888888877776654
No 338
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.06 E-value=1.1e-09 Score=70.46 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=23.9
Q ss_pred EeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccE
Q psy5838 30 TVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66 (215)
Q Consensus 30 ~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~ 66 (215)
..|+.+.|.|.+.|.|.+. +.|+| ++..+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~-------i~W~k-~g~~l 42 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPA-------LQWFY-NGAIL 42 (103)
T ss_dssp CCCCEEEEEEEEECSSCCE-------EEEEE-TTEEE
T ss_pred eECcEEEEEEEEEEeCCCE-------EEEEE-CCEEC
Confidence 3578899999999999998 99999 55543
No 339
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.06 E-value=2e-09 Score=80.29 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=78.6
Q ss_pred ecCCEEEEEEccCCCce-EEEEccC------CeEEEEEcccCCCCCeEEEEEeecCCCcceeeEEEEEcCCeEEecCCCc
Q psy5838 99 ESDRGWYMCQVNTNPRI-SLTYNDH------RSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTST 171 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~-~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~ 171 (215)
..+.-...|.+.+.|.. .+.|... ....|.|.+++.+|+|.|+|.+.+ ...+..+.+.|..++.... +.
T Consensus 15 ~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~s~~~~l~v~~~~~~~~---~~ 90 (262)
T 3rjd_A 15 QEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGL-SGRSDPIQLEIHRGWLLLQ---VS 90 (262)
T ss_dssp TTCCEEEEEECSSCCCTTCEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESS-SCCCCCEEEEEECSSEEEE---ES
T ss_pred CCCeEEEEEECCCCCCCceEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEec-CCccccEEEEEeccceEec---CC
Confidence 45667788999888766 7777432 345699999999999999999974 3345567788877765443 22
Q ss_pred ceeeecCCcEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy5838 172 DLVVREQANVTLNCKA-QGYPEPYVMWRREDGANLSY 207 (215)
Q Consensus 172 ~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~ 207 (215)
...+.+|+.+.|.|.+ .+.|.+.+.|++ +|..+..
T Consensus 91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~-~g~~~~~ 126 (262)
T 3rjd_A 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFKF 126 (262)
T ss_dssp CSEEETTSCEEEEEEEGGGCCCEEEEEEE-TTEEEEE
T ss_pred CeEEecCCeEEEEEEccCCCCCceEEEEE-CCccccc
Confidence 4457899999999999 667888999999 7776543
No 340
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=99.06 E-value=6.4e-10 Score=72.87 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=48.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEEEeeeceeeeCCceEEEEc-CCceEEEEEc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTILSIHHNVITQNPRISLTYN-DHRSWFLNIK 95 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~ 95 (215)
+...|..+.+.+|++|+|.|.+.+.+ .+. +.|+|+. +...... ...+.|+....+ ......|.|.
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~r~~~g~~~~~~----~~~~~r~~~~~~~~~~~~~L~I~ 71 (113)
T 1sq2_N 3 VDQTPRSVTKETGESLTINCVLRDASYALGS-------TCWYRKKSGEGNEES----ISKGGRYVETVNSGSKSFSLRIN 71 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCC-------EEEEEEETTSCCCEE----CCCBTTEEEEEETTTTEEEEEEC
T ss_pred eEeCCccEEEecCCCEEEEEEECCCcCCCCE-------EEEEEeCCCCCceEe----EEeCCCEEEEEeCCCCEEEEEEC
Confidence 44556788999999999999998654 333 9999963 2211000 012345554432 2244566666
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
+++.+|+|.|.|.+.+
T Consensus 72 ~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 72 DLTVEDGGTYRCGLGV 87 (113)
T ss_dssp SCCGGGCEEEEEEECB
T ss_pred CCChhhCEEEEEEEEe
Confidence 6666666666665543
No 341
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=99.06 E-value=4.2e-10 Score=73.88 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
++..+.+.+|++|+|.|.+... .... +.|++..
T Consensus 3 ~~~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~k~~ 36 (116)
T 2or8_A 3 SYVEVKGVVGHPVTLPCTYSTYRGITT-------TCWGRGQ 36 (116)
T ss_dssp CCEEEEEETTSCEEECCBCCCTTCCCC-------EEEEESC
T ss_pred CcceEEEEeCCcEEEEEEeeCCCCCcE-------EEEEEEC
Confidence 3457889999999999998753 2333 8999965
No 342
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-09 Score=88.26 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=49.3
Q ss_pred EEEEcccCCCCCeEEEEEeecCCCcceeeEEEE------EcCCeEEecCCCcceeeecCCcEE-EEEEeccc-CCC-eEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV------VVPPSIIDKDTSTDLVVREQANVT-LNCKAQGY-PEP-YVM 196 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v------~~~p~~~~~~~~~~~~~~~g~~~~-l~C~~~~~-p~~-~i~ 196 (215)
.|.|......|.|.|+|.+.+.........+.. ..+|.+...... . .|+.+. |.|.+.|+ |+. .+.
T Consensus 362 ~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-~----~~~~~~~L~C~~~g~~P~~i~v~ 436 (512)
T 1zvo_C 362 RLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASS-D----PPEAASWLLCEVSGFSPPNILLM 436 (512)
T ss_pred EEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccC-c----CCCCceEEEEEEeeeCCCCcEEE
Confidence 477888888899999999976432211222221 235655543211 1 688899 99999985 443 589
Q ss_pred EEeCCCccccc
Q psy5838 197 WRREDGANLSY 207 (215)
Q Consensus 197 W~~~~~~~~~~ 207 (215)
|++ ||..+..
T Consensus 437 W~k-~g~~~~~ 446 (512)
T 1zvo_C 437 WLE-DQREVNT 446 (512)
T ss_pred EEE-CCeECcC
Confidence 999 7877653
No 343
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=99.05 E-value=4.3e-10 Score=76.85 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=28.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...|..+.+.+|++|+|.|.+....... +.|+|..
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~-------v~Wyrq~ 38 (143)
T 3u6r_L 3 LTQSPATLSLSPGERATLSCRASQSVNKY-------LAWYQQK 38 (143)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEEC
T ss_pred EEECCCEEEEeCCCCEEEEEEECCCCcee-------eEEEEEC
Confidence 44556778999999999999998754444 9999963
No 344
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=99.05 E-value=1.8e-09 Score=71.59 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=50.7
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c--cEEEeeece-----eeeCCceEEEEcCCceE
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q--TILSIHHNV-----ITQNPRISLTYNDHRSW 90 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 90 (215)
.+...|..+.+.+|++|+|.|.+.. .... +.|++... . .++...... ....+|+..........
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~~~-~~~~-------v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 74 (121)
T 2oi9_C 3 AVTQSPRNKVAVTGEKVTLSCNQTN-NHNN-------MYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 74 (121)
T ss_dssp SEEEECSEEEEETTCCEEEEEEESS-CCSE-------EEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEE
T ss_pred ceEeCCCeEEecCCCcEEEEEEecC-CCCe-------EEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEE
Confidence 3455577899999999999999642 2233 99999642 1 122211110 01135665554333456
Q ss_pred EEEEccceecCCEEEEEEccCC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
+|.|.+++.+|+|.|.|.+...
T Consensus 75 sL~I~~v~~~DsG~Y~C~~~~~ 96 (121)
T 2oi9_C 75 SLTLESATPSQTSVYFCASGGG 96 (121)
T ss_dssp EEEESSCCGGGCEEEEEEEESS
T ss_pred EEEECCCCHHHCEEEEEEEccC
Confidence 6777777777777777765543
No 345
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.5e-10 Score=76.57 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~ 63 (215)
...+..++..+.+.+|++|+|.|.+.+. +.+. +.|||+.+
T Consensus 8 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~r~~~ 48 (136)
T 2d9c_A 8 ELQVIQPEKSVSVAAGESATLRCAMTSLIPVGP-------IMWFRGAG 48 (136)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEESCCCSCCC-------CEEEETTT
T ss_pred CeEEEecCcEEEEcCCCCEEEEEEEcCCCCCce-------EEEEeecC
Confidence 3456667788999999999999999865 2334 89999753
No 346
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=99.05 E-value=6.2e-10 Score=72.27 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=47.0
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-CccEEEeeeceeeeCCceEEEEc-CCceEEEEEccc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQTILSIHHNVITQNPRISLTYN-DHRSWFLNIKNV 97 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~ 97 (215)
+...|..+.+.+|++|+|.|.+.+...+. . .+.|+++. +...... ...++|+....+ ....+.|.|.++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~-~----~v~W~r~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~I~~~ 73 (108)
T 2coq_A 3 VDQTPRIATKETGESLTINCVLRDTACAL-D----STNWYRTKLGSTKEQT----ISIGGRYSETVDEGSNSASLTIRDL 73 (108)
T ss_dssp EEEECSEEEECTTCCEEEEEEECCSSEEE-E----EEEEEEEETTCCCEEE----CCCBTTEEEEEETTTTEEEEEECSC
T ss_pred eEeCCceEEEcCCCCEEEEeEeCCCcCCC-C----EEEEEEcCCCCCcEEE----EEeCCceEEEEcCCCCEEEEEECCC
Confidence 44556788999999999999997643111 1 19999963 2211000 012345544322 224456666666
Q ss_pred eecCCEEEEEEcc
Q psy5838 98 QESDRGWYMCQVN 110 (215)
Q Consensus 98 ~~~d~G~Y~C~~~ 110 (215)
+.+|+|.|.|.+.
T Consensus 74 ~~~DsG~Y~C~~~ 86 (108)
T 2coq_A 74 RVEDSGTYKCKAY 86 (108)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcccCEEEEEEEE
Confidence 6666666666543
No 347
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=99.05 E-value=1.1e-08 Score=73.96 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=45.7
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c---cEEEeeeceeeeCCceEEEEc-CCceEEEEEc
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q---TILSIHHNVITQNPRISLTYN-DHRSWFLNIK 95 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~ 95 (215)
.. +..+.+.+|++|+|.|.+.+..... +.|||+.. . .++..........+|+....+ ......|.|.
T Consensus 4 ~Q-p~~~~v~~G~~vtL~C~~s~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~ 75 (200)
T 2nw2_A 4 DQ-PTEMTATEGAIVQINCTYQTSGFNG-------LFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLK 75 (200)
T ss_dssp BC-CSEEEEETTCCEEEEEECCCSSCCC-------EEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EC-CCeEEEccCCCEEEEEEECCCCCce-------EEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEEC
Confidence 44 6788999999999999997654444 99999642 2 122222111111455555432 2234455555
Q ss_pred cceecCCEEEEEE
Q psy5838 96 NVQESDRGWYMCQ 108 (215)
Q Consensus 96 ~~~~~d~G~Y~C~ 108 (215)
+++.+|+|.|.|.
T Consensus 76 ~~~~~Dsg~Y~C~ 88 (200)
T 2nw2_A 76 ELQMKDSASYLCA 88 (200)
T ss_dssp SCCGGGCEEEEEE
T ss_pred ccCcccCCcEEEE
Confidence 5555555555553
No 348
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=99.04 E-value=1.3e-09 Score=76.06 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=28.9
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+.+...+..+.+.+|++|+|.|.+....... +.||++.
T Consensus 10 ~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~-------v~WyrQ~ 47 (166)
T 3dmm_C 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQG-------CSWLFQN 47 (166)
T ss_dssp CEEEEECSCBCCCTTCCEEEEEEEESSSCCE-------EEEEEEE
T ss_pred ccEEEeCCeEEEcCCCCEEEEEEEeCCCCce-------EEEEEEC
Confidence 4566667788899999999999997333333 8999863
No 349
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.04 E-value=2.5e-10 Score=84.87 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=47.4
Q ss_pred EEEEcccCCCCCeEEEEEeecCCC-cceeeEE----EEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCC-eEEEE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTDPM-RSRQGYL----QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWR 198 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~i~W~ 198 (215)
.|.|......|.|.|+|.+.+... ......+ .+..+|.+........ ...|+.+.|.|.+.+ +|.+ .+.|+
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~--~~~g~~~~L~C~~~gf~P~~i~v~W~ 167 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD--ELTKNQVSLTCLVKGFYPSDIAVEWE 167 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG--GGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH--HhcCCceEEEEEEeEEeCCCcEEEEE
Confidence 355666666677888888865432 1122222 1235666665433222 234899999999998 5654 79999
Q ss_pred eCCCcccc
Q psy5838 199 REDGANLS 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+ ||..+.
T Consensus 168 k-~g~~~~ 174 (240)
T 4acp_A 168 S-NGQPEN 174 (240)
T ss_dssp E-TTEECS
T ss_pred E-CCEECC
Confidence 9 776653
No 350
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Probab=99.04 E-value=4.7e-09 Score=76.69 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=26.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.. .... +.|||+.
T Consensus 4 v~Q~p~~v~v~~G~~vtL~C~~~~-~~~~-------v~Wyrq~ 38 (215)
T 1oga_D 4 LEQSPQFLSIQEGENLTVYCNSSS-VFSS-------LQWYRQE 38 (215)
T ss_dssp CEEECSEEEEETTCCEEEEEECSS-CCSC-------EEEEEEC
T ss_pred EEECCCEEEEecCCCEEEEEEEcC-CCce-------EEEEEeC
Confidence 344467889999999999999842 2233 9999964
No 351
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=99.04 E-value=2.4e-09 Score=70.54 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=26.8
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~ 62 (215)
...|..+.+.+|++|+|.|.+.... ... +.||++.
T Consensus 3 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~-------v~Wyrq~ 38 (117)
T 3bp6_A 3 TFYPAWLTVSEGANATFTCSLSNWSEDLM-------LNWNRLS 38 (117)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCE-------EEEEEEC
T ss_pred eecCCcEEEeCCCCEEEEeEeecCCCCCE-------EEEEEeC
Confidence 3446778999999999999998543 233 9999964
No 352
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=99.03 E-value=7.3e-10 Score=72.31 Aligned_cols=82 Identities=26% Similarity=0.367 Sum_probs=51.3
Q ss_pred CCCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecCC-c---cEEEeee-c-ee----ee-CCceEEEEcCCceE
Q psy5838 23 PIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDT-Q---TILSIHH-N-VI----TQ-NPRISLTYNDHRSW 90 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~~-~---~~~~~~~-~-~~----~~-~~~~~~~~~~~~~~ 90 (215)
.|..+.+.+|++|+|.|.+. +.+.+. +.|+|... . .++.... . .. .. .+|+..... ....
T Consensus 5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~ 76 (111)
T 2qhl_A 5 ELHVKTVKRGENVTMECSMSKVKDKDK-------LAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVN-DQKF 76 (111)
T ss_dssp BCEEEECCTTCCEEECCBCTTCSCGGG-------EEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEES-SSBE
T ss_pred CCceEEEeCCCCEEEEEEccCCcccce-------EEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEc-CCeE
Confidence 35678889999999999987 554444 99999642 1 1222111 1 10 01 456666543 3556
Q ss_pred EEEEccceecCCEEEEEEccCC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNTN 112 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~~ 112 (215)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 77 ~L~I~~~~~~DsG~Y~C~~~~~ 98 (111)
T 2qhl_A 77 DLNIIGTREDDGGEYFCGEVEG 98 (111)
T ss_dssp EEEESSCCGGGCEEEEEEEEET
T ss_pred EEEECCCChhHCEEEEEEEccC
Confidence 7777777777777777766543
No 353
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.4e-10 Score=72.96 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.++..+.+.+|++++|.|.+.+.+ +. +.|+|++
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p-p~-------i~W~k~g 40 (99)
T 2cr3_A 8 VEVESFLVHPGDLLQLRCRLRDDV-QS-------INWLRDG 40 (99)
T ss_dssp CCEEECCBCTTSCEEEECCCCSSC-CE-------EEEEESS
T ss_pred CCCcCeEEeCCCcEEEEEEecCCC-Ce-------EEEEECC
Confidence 345667788999999999999865 55 9999954
No 354
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=99.03 E-value=6.3e-10 Score=72.43 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+..... +. +.|+++.
T Consensus 3 p~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~r~~ 35 (110)
T 2q87_A 3 ARTVAGPVGGSLSVQCPYEKEHRTLN-------KYWCRPP 35 (110)
T ss_dssp EEEEEECTTSCEEEEEECCGGGTTSE-------EEEESCC
T ss_pred CcEEEEeCCCcEEEEeEecCCcCCce-------EEEEecC
Confidence 34678899999999999976432 33 9999964
No 355
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*
Probab=98.60 E-value=2.6e-11 Score=79.21 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=47.5
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeec-eeeeCCceEEEEc-CCceEEEEE
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHN-VITQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~i 94 (215)
...|..+.+.+|++|+|.|.+.+.+.+. +.|+++.. .. ++..... ....++|+.+..+ ....++|.|
T Consensus 3 ~Q~p~~v~v~~G~~v~L~C~~~~~~~~~-------v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 75 (110)
T 1u3h_A 3 RQSPQSLTVWEGETAILNCSYENSAFDY-------FPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHI 75 (110)
Confidence 3456778899999999999998665454 99999642 11 1111110 0112345444332 223445666
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|.|.+.+
T Consensus 76 ~~v~~~DsG~Y~C~~~~ 92 (110)
T 1u3h_A 76 ADSQPGDSATYFCAASA 92 (110)
Confidence 66665555555555443
No 356
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=82.18 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=27.8
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.+..... +.|+|+.
T Consensus 3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~-------v~Wyrq~ 38 (199)
T 3gsn_A 3 VEQSPQSLHVQEGDSTNFTCSFPSSNFYA-------LHWYRWE 38 (199)
T ss_dssp CEEECSEEEEETTCCCEEEEECCCTTCCC-------EEEEEEC
T ss_pred EEECCCEEEEeCCCCEEEEEEEcCCCCCE-------EEEEEEC
Confidence 34456778999999999999998653333 9999963
No 357
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.02 E-value=8.1e-10 Score=69.84 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
..|....+.+|+++.|.|.+.+ .+. +.|++ ++..
T Consensus 6 ~~p~~~~v~~G~~~~l~C~~~~--~p~-------v~W~k-~g~~ 39 (95)
T 4hwu_A 6 SQPEAYVVAPGESLELQCMLKD--AAV-------ISWTK-DGVH 39 (95)
T ss_dssp --CEEEEECTTSCEEEECCCCT--TCE-------EEEEE-TTEE
T ss_pred cCCCcEEECCCCEEEEEEEeCC--CCE-------EEEEE-CCEE
Confidence 3466788999999999999986 344 99999 4443
No 358
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=99.02 E-value=1.1e-09 Score=72.93 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=28.1
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
|.+.. |..+.+.+|++|+|.|.+.+.. ... +.|+++.
T Consensus 2 p~v~Q-p~~v~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~ 40 (123)
T 3t0v_A 2 PVLTQ-SPSVSGTPGQKVTIFCSGSSSNVEDNS-------VYWYQQF 40 (123)
T ss_dssp CSBEE-CCCEEECTTCCEEEEEECCTTTTTTSC-------EEEEEEC
T ss_pred CccCc-cCeEEEcCCCCEEEEEecCCCccCCCe-------EEEEEEC
Confidence 45555 4578999999999999998653 233 9999963
No 359
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=99.02 E-value=1.4e-09 Score=72.27 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=26.5
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+...+..+.+.+|++|+|.|.+...... .. .+.|+++.
T Consensus 12 ~~~~~~~~v~~~~G~svtL~C~~s~~~~~-~~----~v~W~rq~ 50 (122)
T 1hkf_A 12 QAQSKAQVLQSVAGQTLTVRCQYPPTGSL-YE----KKGWCKEA 50 (122)
T ss_dssp ---CCCEEEEECTTCCEEEEEECCCCTTC-CC----EEEEEEEE
T ss_pred hhccCCceEEEecCCCEEEEeEccCCCCc-cc----EEEEEcCC
Confidence 45566778899999999999998753221 11 18999964
No 360
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.02 E-value=1.6e-09 Score=72.01 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=51.3
Q ss_pred eCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccceecCCEEEEEEcc
Q psy5838 31 VGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 31 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.+..+.|.|.+.|.|.|. +.|+| ++..+. .+.+......... . +.
T Consensus 14 ~~~~~~l~c~v~G~P~P~-------I~W~k-nG~~l~--------~~~~~~~~~~~~~--------~---~~-------- 58 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPS-------LRWLF-NGSVLN--------ETSFIFTEFLEPA--------A---NE-------- 58 (126)
T ss_dssp CCCEEEEEEEECCSSCCE-------EEEEE-TTEECC--------CCSSEEEEEECCC--------S---SC--------
T ss_pred cCccEEEEEEEeeeCCCe-------EEEEE-CCEECC--------CCCceeEEEeecc--------c---cc--------
Confidence 577899999999999998 99999 555442 2222222111000 0 00
Q ss_pred CCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCC
Q psy5838 111 TNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPP 162 (215)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p 162 (215)
....+.|.|..++..|+|.|+|.|.+ .+.....+.+.|...|
T Consensus 59 ----------~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P 101 (126)
T 1he7_A 59 ----------TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101 (126)
T ss_dssp ----------CCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred ----------cccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCC
Confidence 00112466777777788888888865 3444555556665555
No 361
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=99.01 E-value=2e-09 Score=72.09 Aligned_cols=86 Identities=15% Similarity=0.356 Sum_probs=50.4
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Cc-----c-EEEeee---cee-----eeCCceE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQ-----T-ILSIHH---NVI-----TQNPRIS 81 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~-----~-~~~~~~---~~~-----~~~~~~~ 81 (215)
.+.+...|..+.+.+|++|+|.|.+.+..... +.||++. +. . ++.... ... ....|+.
T Consensus 4 ~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~-------v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs 76 (128)
T 1nez_G 4 APELRIFPKKMDAELGQKVDLVCEVLGSVSQG-------CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFS 76 (128)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCSSC-------EEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEE
T ss_pred CCeeEECCCeEEEcCCCCEEEEEEeCccCCCc-------EEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEE
Confidence 35566777889999999999999997654344 9999963 21 1 222211 000 0124555
Q ss_pred E-EEcCCceEEEEEccceecCCEEEEEEcc
Q psy5838 82 L-TYNDHRSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 82 ~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
. .... ....|.|.+++.+|+|.|.|.+.
T Consensus 77 ~~~~~~-~~~~L~I~~~~~~Dsg~YyCa~~ 105 (128)
T 1nez_G 77 AMRDTN-NKYVLTLNKFSKENEGYYFCSVI 105 (128)
T ss_dssp EEEETT-TEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEeCCC-CEEEEEECCCCHHHCEEEEEEEc
Confidence 5 3332 34556666666666666666543
No 362
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=99.01 E-value=1.4e-09 Score=71.35 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=49.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecC-Cc---c--EEEeeece--ee---eCCceEEEEcCC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVD-TQ---T--ILSIHHNV--IT---QNPRISLTYNDH 87 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~-~~---~--~~~~~~~~--~~---~~~~~~~~~~~~ 87 (215)
+...|..+.+.+|++|+|.|.+.... ... +.|+++. +. + ++...... .. ...|+......
T Consensus 3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~-------v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~- 74 (114)
T 2hp4_A 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSG-------ASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLG- 74 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSC-------EEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEET-
T ss_pred cEeCCCEEEEcCCCCEEEEEEeecCCCCce-------EEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecC-
Confidence 34456778889999999999998543 333 9999863 22 2 22211110 01 13455554332
Q ss_pred ceEEEEEccceecCCEEEEEEccC
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
...+|.|.+++.+|+|.|.|.+.+
T Consensus 75 ~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (114)
T 2hp4_A 75 DTFVLTLSDFRRENEGYYFCSALS 98 (114)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CEEEEEECCCCHHHCEEEEEEEec
Confidence 345667766666666666666554
No 363
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.01 E-value=3.6e-09 Score=75.80 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=55.6
Q ss_pred EEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCCe--EEEEeCCC
Q psy5838 127 LNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPY--VMWRREDG 202 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~ 202 (215)
+.+.+++ +|.+.|.|.+.-. ....+.+.|.|..+|....+.. ....+.+|+.++|+|.+.+ .|.+. ++|++ ++
T Consensus 54 ~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~-~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlk-g~ 130 (196)
T 3bn3_B 54 RQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMP-LPPWQPVGENFTLSCRVPGAGPRASLTLTLLR-GA 130 (196)
T ss_dssp EEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECC-CCSSEETTSEEEEEEEETTCBCGGGEEEEEEE-TT
T ss_pred EEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEcc-CCccccCCCcEEEEEEeCCccCCCCcEEEEEe-CC
Confidence 5677777 6767788998653 4556677899998887654422 2223789999999999987 56654 89999 66
Q ss_pred cccc
Q psy5838 203 ANLS 206 (215)
Q Consensus 203 ~~~~ 206 (215)
+.+.
T Consensus 131 ~~l~ 134 (196)
T 3bn3_B 131 QELI 134 (196)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6554
No 364
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=99.00 E-value=2.8e-09 Score=71.05 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=29.4
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+...|..+.+.+|++|+|.|.+....... +.|++..
T Consensus 6 ~~V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~-------v~Wyrq~ 43 (125)
T 3r8b_B 6 AAVTQSPRNKVAVTGEKVTLSCKQTNSYFNN-------MYWYRQD 43 (125)
T ss_dssp CEEEEECSEEEEETTCCEEEEEEEESCCCSE-------EEEEEEC
T ss_pred CcEEecCCeEEEcCCCcEEEEEEECCCCCCe-------EEEEEEC
Confidence 3456667789999999999999997543323 9999963
No 365
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=99.00 E-value=2.5e-09 Score=70.92 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=44.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-ccEEEeeeceeeeCCceEEEEc-CCceEEEEEccc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QTILSIHHNVITQNPRISLTYN-DHRSWFLNIKNV 97 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~ 97 (215)
+...|..+.+.+|++|+|.|.+.+...+. . .+.|+++.. ...... ...++|+....+ ....+.|.|.++
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~-~----~v~Wyrq~~g~~~~~~----~~~~~R~~~~~~~~~~~~~L~I~~~ 73 (121)
T 2i24_N 3 VDQTPQRITKETGESLTINCVVRDSRCVL-S----TGYWYRKPPGSRNEES----ISDGGRYVETVNRGSKSFSLRINDL 73 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEECSCCCCE-E----EEEEEEECTTCSCCEE----ECSBTTEEEEEETTTTEEEEEECSC
T ss_pred cEECCcEEEEecCCcEEEEeEccCCCCCC-C----EEEEEEeCCCCCceee----EecCCCeEEEecCCCCEEEEEECCC
Confidence 44556788999999999999997543211 1 299999642 211000 012345544321 223445555555
Q ss_pred eecCCEEEEEEc
Q psy5838 98 QESDRGWYMCQV 109 (215)
Q Consensus 98 ~~~d~G~Y~C~~ 109 (215)
+.+|+|.|.|.+
T Consensus 74 ~~~DsG~Y~C~~ 85 (121)
T 2i24_N 74 TVKDSGTYRCKP 85 (121)
T ss_dssp CGGGCEEEEEEE
T ss_pred ChhhCEEEEEEE
Confidence 555555555543
No 366
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=98.99 E-value=3.5e-09 Score=69.48 Aligned_cols=82 Identities=18% Similarity=0.469 Sum_probs=45.7
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC-c-c--EEEeeec---eee--eCCceEEEEcCCce
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN---VIT--QNPRISLTYNDHRS 89 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~---~~~--~~~~~~~~~~~~~~ 89 (215)
+.. |..+.+.+|++|+|.|.+.+. +... +.|++... . + ++..... ... ...|+..... ...
T Consensus 5 v~q-p~~~~~~~G~~v~L~C~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~ 75 (115)
T 2otu_A 5 LTQ-SSSASFSLGASAKLTCTLSSQHSTYT-------IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS-GAD 75 (115)
T ss_dssp EEE-CCCEECCTTCCEEEEEEECGGGTTCC-------EEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEE-TTE
T ss_pred EEc-CCCEEECCCCCEEEEEEecCCCCCeE-------EEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEcc-CCE
Confidence 344 567889999999999999865 3344 99998632 1 1 2221110 010 1245554432 234
Q ss_pred EEEEEccceecCCEEEEEEcc
Q psy5838 90 WFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.+|.|.+++.+|+|.|.|.+.
T Consensus 76 ~~L~I~~~~~~Dsg~Y~C~~~ 96 (115)
T 2otu_A 76 RYLSISNIQPEDEAIYICGVG 96 (115)
T ss_dssp EEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEECCCChhHCEEEEEEEe
Confidence 455555555555555555443
No 367
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=98.99 E-value=4.3e-10 Score=73.95 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=36.1
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+|.|...+....+.+|++++|.|.+.+.|.+. +.|++++
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~-------v~W~k~~ 47 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGG 47 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCE-------EEEEETT
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCe-------EEEEECC
Confidence 4478888888899999999999999999988887 9999953
No 368
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=98.99 E-value=4e-09 Score=70.70 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=26.9
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEec
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRV 61 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~ 61 (215)
++..|..+.+.+|++|+|.|.+.+.. ... +.|++.
T Consensus 4 ~~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~-------v~Wyrq 39 (129)
T 3rrq_A 4 PTFSPALLVVTEGDNATFTCSFSNTSESFV-------LNWYRM 39 (129)
T ss_dssp CEEECSEEEEETTSCEEEEEECCCCC-CEE-------EEEEEE
T ss_pred cEECCCEEEEeCCCCEEEEeEecCCCCCcE-------EEEeEe
Confidence 34456789999999999999998653 222 899985
No 369
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=98.99 E-value=1.2e-09 Score=85.23 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=60.2
Q ss_pred EEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecC--CCcceeeecCCcEEEEEEe-----cccCCCeEE
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKD--TSTDLVVREQANVTLNCKA-----QGYPEPYVM 196 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~ 196 (215)
..|.|.+++.+|+|.|+|.+.+. +.....+.+.|..++...... .+....+.+|+.+.|.|.+ .+.|.+.+.
T Consensus 79 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~ 158 (349)
T 4dep_C 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT 158 (349)
T ss_dssp TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEE
T ss_pred CEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEE
Confidence 35999999999999999999763 334445667777655432211 1234467899999999985 678899999
Q ss_pred EEeCCCccccc
Q psy5838 197 WRREDGANLSY 207 (215)
Q Consensus 197 W~~~~~~~~~~ 207 (215)
|++ ++..+..
T Consensus 159 W~k-~~~~l~~ 168 (349)
T 4dep_C 159 WYM-GCYKIQN 168 (349)
T ss_dssp EEE-TTEECCS
T ss_pred Eee-CCEECCC
Confidence 999 7776643
No 370
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...
Probab=98.99 E-value=4.9e-09 Score=77.32 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=28.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.+..... +.||++.
T Consensus 4 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~-------v~Wyrq~ 39 (229)
T 2q86_A 4 VEQSPQSLVVRQGENCVLQCNYSVTPDNH-------LRWYKQD 39 (229)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSCCSC-------EEEEEEC
T ss_pred eEECCCEEEEecCCCEEEEEEECCCCCcE-------EEEEEEC
Confidence 34456778999999999999997654444 9999974
No 371
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=98.98 E-value=2.9e-09 Score=76.92 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
..+....+.+|+.+.|.|.+.+.+.+. +.|+++ +..
T Consensus 122 ~~~~~~~v~~g~~~~l~C~~~g~p~p~-------v~W~~~-~~~ 157 (212)
T 2r15_A 122 GLPDVVTIQEGKALNLTCNVWGDPPPE-------VSWLKN-EKA 157 (212)
T ss_dssp BCCSEEEEETTCCEEEEEEEECSSCCE-------EEEEET-TEE
T ss_pred cCCCcEEEccCCeEEEEEEEcCCCCce-------EEEEEC-CeE
Confidence 346678899999999999999988887 999994 443
No 372
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=98.98 E-value=9.8e-09 Score=67.34 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=46.5
Q ss_pred CceEEEeCCcEEEEEEeecc---CCccceeeeEEEEEEecCC--c--cEEEeeec-ee----eeCCceEEEEcC-CceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNL---KGFKGLRIGWQVAWVRVDT--Q--TILSIHHN-VI----TQNPRISLTYND-HRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~---~~~~~~~~~~~v~W~~~~~--~--~~~~~~~~-~~----~~~~~~~~~~~~-~~~~~ 91 (215)
..+.+.+|++|+|.|.+... +... +.|+|... . .++..... .. ....|+....+. ....+
T Consensus 6 ~~~~~~~G~~v~L~C~~~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 78 (116)
T 3bj9_1 6 PAMSSALGTTIRLTCTLRNDHDIGVYS-------VYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGY 78 (116)
T ss_dssp SEEEEETTCCEEEEEEECSSSCGGGCC-------EEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEE
T ss_pred CcEEEcCCCcEEEEEEeecCccCCCce-------EEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEE
Confidence 36889999999999999754 2233 99998642 1 12222111 00 013566555432 12346
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+.+
T Consensus 79 L~I~~~~~~DsG~Y~C~~~~ 98 (116)
T 3bj9_1 79 LSISELQPEDEAMYYCAMGA 98 (116)
T ss_dssp EEECSCCGGGCEEEEEEECC
T ss_pred EEECCCChhHCEEEEEEEeC
Confidence 66666666666666666554
No 373
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=98.98 E-value=9.8e-10 Score=79.79 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=47.4
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.|.|...+ ...+.+|+++.|.|.+.+. |.+. +.|+| ++..+. .+.++. .......|.|.
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~-------i~W~k-~g~~l~--------~~~~~~---~~~~~~~L~I~ 176 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETH-------IVWYK-DEREIS--------VDEKHD---FKDGICTLLIT 176 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCE-------EEEEE-TTEEEC--------CCCCCC---CSSEEEEEEET
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCE-------EEEEE-CCEECC--------CCCceE---cCCCEEEEEEC
Confidence 56666655 4788899999999999987 7787 99999 555442 111211 11123346666
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
+++.+|+|.|+|.|.|
T Consensus 177 ~v~~~D~G~Y~C~a~N 192 (207)
T 3rbs_A 177 EFSKKDAGIYEVILKD 192 (207)
T ss_dssp TCCGGGCEEEEEEEEE
T ss_pred CCCcccCEEEEEEEEc
Confidence 6666665555555544
No 374
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=98.97 E-value=1.9e-09 Score=77.54 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=45.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeeec-eeeeCCceEEEEc-CCceEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHHN-VITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~ 93 (215)
+...+..+.+.+|++|+|.|.+.+..... +.|+|+. +.. ++..... .....+|+....+ ....+.|.
T Consensus 4 v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~ 76 (194)
T 1lp9_E 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPF-------LFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQ 76 (194)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCC-------EEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEE
T ss_pred cEecCCEEEEecCCCEEEEEEeCCCCCce-------EEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEE
Confidence 44556789999999999999998655444 9999974 221 2221111 1112345554422 12334555
Q ss_pred EccceecCCEEEEE
Q psy5838 94 IKNVQESDRGWYMC 107 (215)
Q Consensus 94 i~~~~~~d~G~Y~C 107 (215)
|.+++.+|+|.|+|
T Consensus 77 I~~~~~~Dsg~Y~C 90 (194)
T 1lp9_E 77 KSSAQLSDSALYYC 90 (194)
T ss_dssp ESSCCGGGCEEEEE
T ss_pred EcccCcccCeeEEE
Confidence 55555555555555
No 375
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=98.97 E-value=8.2e-10 Score=73.14 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCcc-ceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFK-GLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~-~~~~~~~v~W~~~~ 62 (215)
...+..++..+.+.+|++++|.|.+.+.+... ... +.|++..
T Consensus 5 ~~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~----v~W~~~~ 47 (126)
T 1eaj_A 5 SLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLD----IEWLISP 47 (126)
T ss_dssp SCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEE----EEEEEEE
T ss_pred cEEEECCCceEEEEeCCCEEEEEEEecCCCCCCceE----EEEEEeC
Confidence 34455566788999999999999998654321 122 8999864
No 376
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=98.97 E-value=6e-09 Score=69.03 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=47.8
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c-c--EEEeeec------eeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN------VITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~------~~~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.+ ... +.|+++.. . + ++..... .....+|+.+..+ ....+
T Consensus 9 p~~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 81 (121)
T 2xt1_B 9 SGGGLVQAGGSLRLSCAASGSFFMSNV-------MAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNIL 81 (121)
T ss_dssp ECCEEEETTCCEEEEEEEESSSCCCSE-------EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEE
T ss_pred CCCEEEeCCCCEEEEEEecCeeccCce-------EEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEE
Confidence 3468899999999999997532 223 99999642 1 1 2222110 0112356666543 23456
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.|.+++.+|+|.|.|.+.
T Consensus 82 sL~I~~v~~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 82 YLQMNDLKPEDTAMYYCKAS 101 (121)
T ss_dssp EEEECSCCGGGCEEEEEEET
T ss_pred EEEECCCCHHHCEEEEEEEE
Confidence 67777777666666666554
No 377
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=98.97 E-value=3.1e-09 Score=79.66 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=52.4
Q ss_pred EEEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEe---cccCCCeEEEEeC
Q psy5838 125 WFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA---QGYPEPYVMWRRE 200 (215)
Q Consensus 125 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~i~W~~~ 200 (215)
..|.|.+++.+|+|.|+|.+.+.. .......+.+.+.+. .+....+.+|+++.|.|.+ .+.|.+.+.|+++
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~ 158 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence 569999999999999999997532 222233333332221 2335668899999999999 5678899999995
Q ss_pred CC
Q psy5838 201 DG 202 (215)
Q Consensus 201 ~~ 202 (215)
++
T Consensus 159 ~~ 160 (268)
T 3mj6_A 159 SG 160 (268)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 378
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=98.97 E-value=4e-09 Score=72.63 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=28.2
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
|.+...|..+.+.+|++|+|.|.+.+. .... +.||++.
T Consensus 2 ~~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~-------v~Wyrq~ 40 (150)
T 3dmm_D 2 SALIQTPSSLLVQTNHTAKMSCEVKSISKLTS-------IYWLRER 40 (150)
T ss_dssp --CEEECSEEEEETTSCEEEEEECCCSSCCCE-------EEEEEEE
T ss_pred CccEECCCeEEEeCCCcEEEEEEecCCCCCce-------EEEEEeC
Confidence 445566778999999999999999764 2333 8999963
No 379
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=98.97 E-value=3.8e-09 Score=68.65 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCc
Q psy5838 24 IPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
...+.+.+|++|+|.|.+ .+.+.+. +.|++..+.
T Consensus 10 ~~~v~~~~G~~v~L~C~~~~~~~~~~-------v~W~~~~~~ 44 (110)
T 2ptt_A 10 IPDINAYTGSNVTLKIHKDPLGPYRR-------ITWLHTKNQ 44 (110)
T ss_dssp CCSEEEETTSCEEECSCSSCCCSCSE-------EEEEESTTB
T ss_pred CCCEEEecCCcEEEeCCccCCCCcCE-------EEEEecCCc
Confidence 456889999999999998 4444444 999994444
No 380
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=98.96 E-value=2.4e-09 Score=70.96 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCCceEEEeCCcEEEEEEeecc----CCccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNL----KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~----~~~~~~~~~~~v~W~~~~ 62 (215)
.+..+.+.+|++|+|.|.+... .... +.|++..
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~-------v~W~~~~ 41 (124)
T 1neu_A 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDIS-------FTWRYQP 41 (124)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCE-------EEEEEEE
T ss_pred cCCeEEEEeCCeEEEEeEEeCCCCCCCceE-------EEEEEcC
Confidence 3567889999999999998743 2233 8999864
No 381
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=98.96 E-value=7.8e-10 Score=85.52 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=49.9
Q ss_pred cCCCCceEEEeCCcEEEEEEeecc-CCc---cceeeeEEEEEEecCCccEEEeeece-eeeCCceEEEEcCCceEEEEEc
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNL-KGF---KGLRIGWQVAWVRVDTQTILSIHHNV-ITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~-~~~---~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
...+....+.+|++++|.|.+.+. +.+ . +.|+++++..+....... ...+.++. ..+.|.|.
T Consensus 117 ~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~-------i~W~k~~g~~~~~~~~~~~~~~~g~~~------~~~~L~I~ 183 (323)
T 2wqr_A 117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQ-------LTWSRASGKPVNHSTRKEEKQRNGTLT------VTSTLPVG 183 (323)
T ss_dssp ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCE-------EEEEETTCCCCCCCCCEEEECTTSCEE------EEEEEECC
T ss_pred EcCCCHHHhccCCeEEEEEEEeccCCCCCceE-------EEEEECCCcccccccCCCccCCCCCEE------EEEEEEEC
Confidence 444555567789999999999875 334 4 999996554431100000 00111221 23479999
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
+++.+|+|.|+|.+.+
T Consensus 184 ~~~~~D~G~Y~C~a~n 199 (323)
T 2wqr_A 184 TRDWIEGETYQCRVTH 199 (323)
T ss_dssp HHHHHTTCCEEEEEEC
T ss_pred HHHccCCCCEEEEEEC
Confidence 9999999999998764
No 382
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=98.95 E-value=4.3e-09 Score=71.15 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=48.9
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccC---CccceeeeEEEEEEecCC-c-c-EEEeeecee--eeCCceEEEEcCCce
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLK---GFKGLRIGWQVAWVRVDT-Q-T-ILSIHHNVI--TQNPRISLTYNDHRS 89 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~---~~~~~~~~~~v~W~~~~~-~-~-~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (215)
+.+..++ .+.+.+|++|+|.|.+.... .+. +.|||+.. . + ++....... ....|+..... ...
T Consensus 7 ~~v~q~~-~v~v~~G~~vtL~C~~~~~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~-~~~ 77 (135)
T 1p4b_L 7 AVVTQES-ALTTSPGETVTLTCRSSTGAVTTSNY-------ASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-GDK 77 (135)
T ss_dssp CCEECCS-EEEECTTCEEEEEEEETTSSCCGGGC-------CEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEE-TTE
T ss_pred eeEEECC-cEEEcCCCCEEEEEEecCCCcCCCCE-------EEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcC-CCE
Confidence 3445544 48999999999999998654 233 89998642 1 1 111111111 11346655442 245
Q ss_pred EEEEEccceecCCEEEEEEccC
Q psy5838 90 WFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
..|.|.+++.+|+|.|+|.+.+
T Consensus 78 ~sL~I~~v~~~DsG~Y~C~~~~ 99 (135)
T 1p4b_L 78 AALTITGAQTEDEAIYFCALWY 99 (135)
T ss_dssp EEEEEESCCGGGCEEEEEEEEC
T ss_pred EEEEECCCChhHCEEEEEEEec
Confidence 5666666666666666666544
No 383
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=98.95 E-value=7.5e-10 Score=72.25 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+..+.+|++|.|.|......... +.|+|+.
T Consensus 5 i~~~p~~~~~G~~v~L~~~~~p~~~~~-------i~W~kg~ 38 (111)
T 2qsq_A 5 IESTPFNVAEGKEVLLLVHNLPQHLFG-------YSWYKGE 38 (111)
T ss_dssp EEEESSEEETTSCEEEEEESCCSSEEE-------EEEEESS
T ss_pred EEeccceeccCCCEEEEEeCCCCCceE-------EEEEeCC
Confidence 334456889999999999864322222 8999964
No 384
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=98.94 E-value=6.6e-09 Score=68.05 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Cc-c--EEEeee-c---eeeeCCceEEEEc-CCceEE
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQ-T--ILSIHH-N---VITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~-~--~~~~~~-~---~~~~~~~~~~~~~-~~~~~~ 91 (215)
.+..+.+.+|++|+|.|.+.+.. ... +.|+|.. +. + ++.... . ....++|+.+..+ ......
T Consensus 5 ~p~~v~~~~G~~vtL~C~~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 77 (114)
T 1u9k_A 5 EEERYDLVEGQTLTVKCPFNIMKYANSQ-------KAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQ 77 (114)
T ss_dssp CCEEEEECTTCCEEEEEECCHHHHTTSE-------EEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEE
T ss_pred CCccEEEeCCCcEEEEeEecCcccCCce-------EEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEE
Confidence 45678899999999999997532 233 8999963 22 1 222211 0 0112356665543 234556
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+..
T Consensus 78 L~I~~~~~~Dsg~Y~C~~~~ 97 (114)
T 1u9k_A 78 VQMTDLQVTDSGLYRCVIYH 97 (114)
T ss_dssp EEECSCCGGGCEEEEEEEEC
T ss_pred EEECCCChHHCEEEEEEEec
Confidence 66666666666666665543
No 385
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=98.94 E-value=3.9e-09 Score=81.50 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=60.5
Q ss_pred eEEEEEcccCCCCCeEEEEEee-c-CCCcceeeEEEEEcCCeEEecCCCcceeeecC---CcEEEEEE-ecccCCCeEEE
Q psy5838 124 SWFLNIKNVQESDRGWYMCQVN-T-DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQ---ANVTLNCK-AQGYPEPYVMW 197 (215)
Q Consensus 124 ~~~l~i~~~~~~d~G~Y~C~~~-~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~p~~~i~W 197 (215)
+..|.|.+++.+|+|.|+|.+. + .+.....+.|.|..+|.+..........+.+| +.+.|.|. ..+.|.+.+.|
T Consensus 91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W 170 (331)
T 3u83_A 91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 170 (331)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEE
T ss_pred CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEE
Confidence 3459999999999999999853 3 34455667788888888755444556667888 77999998 78899999999
Q ss_pred EeC
Q psy5838 198 RRE 200 (215)
Q Consensus 198 ~~~ 200 (215)
+++
T Consensus 171 ~~~ 173 (331)
T 3u83_A 171 ETR 173 (331)
T ss_dssp EES
T ss_pred EcC
Confidence 993
No 386
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=98.94 E-value=3.3e-09 Score=78.19 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+...+..+.+.+|++++|.|.+.+.+.+. +.|+|+.
T Consensus 129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~-------i~W~k~~ 165 (238)
T 2p1y_A 129 QVRQSPQSLTVWEGETAILNCSYENSAFDY-------FPWYQQF 165 (238)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCCTTCCE-------EEEEEEC
T ss_pred eEEccCceEEEeCCCeEEEEEEEecCCCCc-------EEEEEEC
Confidence 455556778899999999999999877666 9999964
No 387
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=98.94 E-value=1e-09 Score=72.68 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=26.2
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~ 62 (215)
.|..+.+.+|++|+|.|.+...... ... .+.|+++.
T Consensus 13 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~----~v~W~r~~ 49 (120)
T 3noi_A 13 QPPEIRTLEGSSAFLPCSFNASQGRLAIG----SVTWFRDE 49 (120)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTSCCCE----EEEEEESS
T ss_pred CCCEEEEEcCCCEEEEeeecCCCCCCcee----EEEEEecc
Confidence 3567889999999999999865411 111 18999965
No 388
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=98.94 E-value=1.4e-09 Score=72.02 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=25.6
Q ss_pred cCCCCceEEEeCCcEEEEEEeeccC---CccceeeeEEEEEEecC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNLK---GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~~---~~~~~~~~~~v~W~~~~ 62 (215)
..++ .+.+.+|++|+|.|.+.+.. .+. +.|||+.
T Consensus 5 ~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~-------v~Wyrq~ 41 (120)
T 1oaq_L 5 TQES-ALTTSPGETVTLTCRSSTGAVTTSNY-------ANWVQEK 41 (120)
T ss_dssp EECS-EEEECTTCEEEEEEEETTBCCCGGGC-------CEEEEEE
T ss_pred EcCC-cEEEcCCCCEEEEEEeCCCccCCCCE-------EEEEEeC
Confidence 3444 48899999999999998654 233 8999863
No 389
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=98.93 E-value=3.8e-09 Score=70.19 Aligned_cols=36 Identities=42% Similarity=0.570 Sum_probs=27.1
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|..+.+.+|++|+|.|.+.+.+...... +.|+|..
T Consensus 6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~----V~W~k~~ 41 (123)
T 4gjt_B 6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQ----VAWARVD 41 (123)
T ss_dssp CCSEEECCTTSEEEECCEECCCTTCCEEE----EEEEECC
T ss_pred cCCEEEEEcCCCEEEEEEEeCCccCceeE----EEEEEcC
Confidence 35678899999999999998665443232 8899854
No 390
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=98.93 E-value=1.1e-08 Score=69.00 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.3
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~ 62 (215)
.+...+..+.+.+|++|+|.|.+.... ... +.||++.
T Consensus 11 ~v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~-------v~Wyrq~ 48 (134)
T 3bik_B 11 SLTFYPAWLTVSEGANATFTCSLSNWSEDLM-------LNWNRLS 48 (134)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSCCTTCE-------EEEEEEC
T ss_pred cEEECCCeEEEeCCCCEEEEEEeCCCCCCcE-------EEEEEcC
Confidence 345557789999999999999997543 233 9999964
No 391
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=98.93 E-value=9.6e-09 Score=68.37 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=25.1
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+...... . .+.|+++.
T Consensus 9 p~~v~~~~G~svtL~C~~s~~~~~--~----~~~W~rq~ 41 (124)
T 2nms_A 9 PTTVNGLERGSLTVQCVYRSGWET--Y----LKWWCRGA 41 (124)
T ss_dssp CSEEEEETTCCEEEEEEECTTCTT--S----EEEEEESS
T ss_pred ccEEEEeCCCCEEEEeEEeCCccc--c----cEEEEeCC
Confidence 567889999999999999754322 1 18999974
No 392
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=98.93 E-value=2.1e-09 Score=69.50 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=24.3
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+.+.+|++|+|.|.+.+.+...... +.|++..
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~----v~W~~~~ 35 (109)
T 2oyp_A 3 GYKVEVGKNAYLPCSYTLPTSGTLVP----MCWGKGF 35 (109)
T ss_dssp EEEECTTSCEEECCBCCCCTTCCCCC----EEEESSS
T ss_pred CEEEEcCCCEEEEEEeECCCCCCeEE----EEEEecC
Confidence 57788999999999998654332222 8999964
No 393
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=98.92 E-value=7.3e-09 Score=73.67 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.|.+...+....+.+|+++.|.|.+.+.+.+. +.|+++
T Consensus 92 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~-------i~W~~~ 129 (190)
T 2wv3_A 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPE-------WMWRKK 129 (190)
T ss_dssp CCEEEEECSEEEEETTSCEEEEEEEECSSCCE-------EEEEEE
T ss_pred CCcccccCCcceeeCCCcEEEEEEeCccCCCc-------eEEEEc
Confidence 57777777788899999999999999888776 999995
No 394
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=98.92 E-value=5.1e-10 Score=86.91 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=76.2
Q ss_pred cCCEEEEEEcc-------CCCceEEEEccC----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeE
Q psy5838 100 SDRGWYMCQVN-------TNPRISLTYNDH----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGY 155 (215)
Q Consensus 100 ~d~G~Y~C~~~-------~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 155 (215)
.+.-...|.+. +.|.+.+.|... .+..|.|.+++.+|+|.|+|.+.+. +.....+.
T Consensus 33 G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 112 (339)
T 3o4o_C 33 GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112 (339)
T ss_dssp TBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEE
T ss_pred CccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEE
Confidence 44556678887 777777776321 1235999999999999999999753 33455566
Q ss_pred EEEEcCCeEEecCCCcceeeecCCcEEEEEE-----ecccCCCeEEEEeCCCcccccc
Q psy5838 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCK-----AQGYPEPYVMWRREDGANLSYN 208 (215)
Q Consensus 156 l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~i~W~~~~~~~~~~~ 208 (215)
|.|..++............+.+|+.+.|.|. +.+.|.+.+.|++ +|..+...
T Consensus 113 l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k-~g~~~~~~ 169 (339)
T 3o4o_C 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKD 169 (339)
T ss_dssp EEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEE-SSCBCCTT
T ss_pred EEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEec-CCeeCCCC
Confidence 7777665432111122346789999999999 7888999999999 77776544
No 395
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=98.92 E-value=1.6e-09 Score=71.05 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.0
Q ss_pred CCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+... .... +.|++..
T Consensus 4 p~~v~~~~G~~v~L~C~~~~~~~~~~~-------v~W~~~~ 37 (115)
T 2or7_A 4 HTAVQGLAGHPVTLPCIYSTHLGGIVP-------MCWGLGE 37 (115)
T ss_dssp --CEEEETTSCEEECCBCCHHHHCSCC-------EEEEESC
T ss_pred ccEEEEEcCCCEEEEEEeecCCCCCEE-------EEEECCC
Confidence 567899999999999999753 2233 9999964
No 396
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=98.92 E-value=6.5e-10 Score=80.55 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=31.3
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~ 64 (215)
+|.+...+....+.+|+++.|.|.+.|.|.|. +.|+++++.
T Consensus 106 p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~-------v~W~~~~~~ 146 (203)
T 4fa8_A 106 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH-------VQWLMPEGV 146 (203)
T ss_dssp EEEEEEEEEECCSSCSCCEEEEEEEEEESCCE-------EEECCC---
T ss_pred CceeeecceeEEEcCCCEEEEEEEcCCCCCCE-------EEEEECCee
Confidence 45555556667778999999999999999888 999986654
No 397
>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Probab=98.92 E-value=4.3e-09 Score=70.82 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.9
Q ss_pred cccCCCCceEEEeCCcEEEEEEeec---cCCccceeeeEEEEEEecCC
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDN---LKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~---~~~~~~~~~~~~v~W~~~~~ 63 (215)
.+...+..+.+.+|++|+|.|.+.. .+.+. +.|++...
T Consensus 6 ~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~-------v~W~k~~~ 46 (135)
T 1xt5_A 6 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPV-------ISWLKGAS 46 (135)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEEETCCSCCE-------EEEEEESS
T ss_pred EEeCCCceEEEeCCCCEEEeeEeecCCCCCccE-------EEEEeeCC
Confidence 4555677899999999999999864 23344 99999653
No 398
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.91 E-value=6.6e-09 Score=68.78 Aligned_cols=80 Identities=16% Similarity=0.362 Sum_probs=43.1
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c-c--EEEeee-ce--e--eeCCceEEEEc-CCceEEEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q-T--ILSIHH-NV--I--TQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~-~--~~~~~~-~~--~--~~~~~~~~~~~-~~~~~~l~i 94 (215)
..+.+.+|++|+|.|.+.+.... +. .+.|+|... . + ++.... .. . ...+|+.+..+ ......|.|
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (121)
T 1kxv_C 8 GGGTVPAGGSLRLSCAASGNTLC-TY----DMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQM 82 (121)
T ss_dssp CCEEECTTCCEEEEEEEESCTTC-CE----EEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEE
T ss_pred CCEEEcCCCcEEEEEEecCCCcC-ce----EEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEE
Confidence 46889999999999999854311 11 299999642 1 1 222111 00 0 11345555543 223455555
Q ss_pred ccceecCCEEEEEEc
Q psy5838 95 KNVQESDRGWYMCQV 109 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~ 109 (215)
.+++.+|+|.|.|.+
T Consensus 83 ~~~~~~Dsg~Y~C~~ 97 (121)
T 1kxv_C 83 DSLKPDDTAMYYCKP 97 (121)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred CCCCHHHCEEEEEEE
Confidence 555555555555543
No 399
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=98.91 E-value=4.6e-09 Score=69.20 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=24.7
Q ss_pred CCCceEEEeCCcEEEEEEeeccC---CccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLK---GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~---~~~~~~~~~~v~W~~~~ 62 (215)
.|..+.+.+|++|+|.|.+.... ... +.|+++.
T Consensus 6 ~p~~v~~~~G~~vtL~C~~s~~~~~~~~~-------v~Wyrq~ 41 (117)
T 1xed_A 6 GPEEVNSVEGNSVSITCYYPPTSVNRHTR-------KYWCRQG 41 (117)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSC-------EEEEEC-
T ss_pred CCCeEEEecCCCEEEEeEecCCcCCCCce-------EEEEEeC
Confidence 35678899999999999987431 123 9999964
No 400
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Probab=98.91 E-value=3.3e-09 Score=70.06 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=25.8
Q ss_pred CCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..+..+.+.+|++|+|.|.+.......... +.|++.
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~----v~W~~~ 41 (119)
T 2pnd_A 6 KTPESVTGTWKGDVKIQCIYDPLRGYRQVL----VKWLVR 41 (119)
T ss_dssp BCCSEEEEETTSCEEECCBCCCCTTCEEEE----EEEEEE
T ss_pred cCCceEEEEcCCcEEEEEEEcCCCCCCceE----EEEEEe
Confidence 346688999999999999987533322222 789885
No 401
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=98.91 E-value=1e-08 Score=67.67 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=44.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeeec--e----eeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHHN--V----ITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~~--~----~~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.. ... +.|++... .. ++..... . ....+|+.+..+ .....
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~~~~-------v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (120)
T 1n4x_H 7 SGPELKKPGETVKISCKATNYAFTDYS-------MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTA 79 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEE
T ss_pred CCCEEEcCCCeEEEEEEecCcccCCcE-------EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEE
Confidence 3468899999999999997532 223 99999642 21 2221110 0 011245555543 22345
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.|.+++.+|+|.|.|.+.
T Consensus 80 ~L~I~~~~~~DsG~Y~C~~~ 99 (120)
T 1n4x_H 80 FLQINNLKNEDTATYFCVRD 99 (120)
T ss_dssp EEEECSCCGGGCEEEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEE
Confidence 56666665555555555544
No 402
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=98.91 E-value=6.8e-09 Score=75.23 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|.+...+....+..|+++.|.|.+.+.+.+. +.|++++
T Consensus 108 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~-------v~W~~~g 146 (212)
T 2yd6_A 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPE-------ITWFKDF 146 (212)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCE-------EEEEETT
T ss_pred cceeecCCcceeEecCCCEEEEEEecCCCCCe-------EEEEECC
Confidence 36677777788899999999999999888877 9999943
No 403
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=98.90 E-value=2.1e-09 Score=72.24 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCcEEEEEEeecc-------CCccceeeeEEEEEEecC
Q psy5838 22 EPIPNVTVTVGRDALLACVVDNL-------KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 22 ~~~~~~~~~~G~~v~L~C~~~~~-------~~~~~~~~~~~v~W~~~~ 62 (215)
..|..+.+.+|++|+|.|.+..+ .... +.|++..
T Consensus 11 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~-------v~W~~~~ 51 (132)
T 1nko_A 11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVH-------GYWFRAG 51 (132)
T ss_dssp EECSEEEEETTCCEEECEEEECCCCTTTTTSCCE-------EEEEEC-
T ss_pred eCCCEEEEcCCCeEEEEccccCCCccccCCCccE-------EEEEECC
Confidence 34678999999999999999742 2233 9999964
No 404
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=98.90 E-value=1.6e-08 Score=64.19 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCceEEEeCCcEEEEEEeec-cCCccceeeeEEEEEEecCCccEE
Q psy5838 24 IPNVTVTVGRDALLACVVDN-LKGFKGLRIGWQVAWVRVDTQTIL 67 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~~~~~~~~~ 67 (215)
.....+..|+++.|.|.+.+ .+.|. |.|.|-++....
T Consensus 21 ~S~~tv~~G~~~~LeCpv~yc~~rPn-------VtWcK~~~~~c~ 58 (122)
T 1xau_A 21 NSKHSAWTGELFKIECPVKYCVHRPN-------VTWCKHNGTIWV 58 (122)
T ss_dssp TEEEEECTTSCEEEEEEEECSSSCCC-------EEEEEECSSSEE
T ss_pred eccEEEecCCeEEEEeEecCCCCCCc-------EEEEecCCeecc
Confidence 34667889999999999976 46777 999997765544
No 405
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1
Probab=98.90 E-value=4.1e-09 Score=71.89 Aligned_cols=36 Identities=11% Similarity=0.362 Sum_probs=27.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~ 62 (215)
+...+..+.+.+|++|+|.|.+.... ... +.||++.
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~-------v~Wyrq~ 39 (142)
T 2ol3_A 3 VTQTQTSISVMEKTTVTMDCVYETQDSSYF-------LFWYKQT 39 (142)
T ss_dssp CBCCCSEEEEETTCCEEECCBCCCCCSSCE-------EEEEEEC
T ss_pred eEecCCeEEEecCCCEEEEEEecCCcCCce-------EEEEEeC
Confidence 34556788999999999999987643 223 9999974
No 406
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=98.90 E-value=1.2e-08 Score=76.23 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=50.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCC-ccceeeeEEEEEEecC--Cc-cEEEeeecee--eeCCceEEEEcCCceE
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKG-FKGLRIGWQVAWVRVD--TQ-TILSIHHNVI--TQNPRISLTYNDHRSW 90 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~-~~~~~~~~~v~W~~~~--~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (215)
.|.+...+..+.+.+|++|+|.|.+.+.+. +. +.|+|.. .. .++....... ....|+...... ...
T Consensus 149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~ 220 (256)
T 3juy_B 149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRR-------VAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-TDF 220 (256)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCTTCC-------EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEE
T ss_pred eeEEEecCCeEEEeCCCCEEEEEEECCCcCCee-------EEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-CEE
Confidence 456666778889999999999999988654 55 9999842 11 1111110000 012444443322 344
Q ss_pred EEEEccceecCCEEEEEEccC
Q psy5838 91 FLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
.|.|.+++.+|+|.|+|.+.+
T Consensus 221 ~L~I~~v~~~DsG~Y~C~~~~ 241 (256)
T 3juy_B 221 TLTITRVEPEDFALYYCQVYG 241 (256)
T ss_dssp EEEESSCCGGGCSEEEEEECC
T ss_pred EEEECCCCHhHCEEEEEEEee
Confidence 566666666666666665554
No 407
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=98.90 E-value=1.3e-08 Score=66.95 Aligned_cols=80 Identities=15% Similarity=0.335 Sum_probs=46.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeeec----e--eeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHHN----V--ITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~~----~--~~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.. ... +.|++... .. ++..... . ....+|+.+..+ .....
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~~~~-------v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (117)
T 2yc1_A 7 SGGGLVQPGGSLRLSCTGSGFTFDNYA-------MHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTL 79 (117)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEE
T ss_pred CCCEEEcCCCeEEEEEEecCcccCCCe-------EEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEE
Confidence 3468899999999999997532 223 99999642 21 2221110 0 012356665543 23455
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.|.+++.+|+|.|.|.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~ 99 (117)
T 2yc1_A 80 SLQMNSLRAEDTAVYYCARG 99 (117)
T ss_dssp EEEECSCCGGGCEEEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEE
Confidence 66666666666666666544
No 408
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=98.90 E-value=3.6e-08 Score=72.40 Aligned_cols=82 Identities=16% Similarity=0.317 Sum_probs=53.8
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Cc-c-EEEeeeceee--eCCceEEEEcCCceEEEEE
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQ-T-ILSIHHNVIT--QNPRISLTYNDHRSWFLNI 94 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i 94 (215)
++..|..+.+..|+.|+|.|.....-..- +.||++. ++ + ++........ --+|+.-...+ ..++|.|
T Consensus 4 lTQsP~sls~s~G~~vtisC~~S~~i~~y-------~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sg-t~ftLtI 75 (259)
T 4f9l_D 4 LTQSPSSLSASLGDTITITCHASQNINLW-------LSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSA-TGFTLTI 75 (259)
T ss_dssp EEEECSBCCBCTTCEEEEEEEESSCCTTC-------EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEE
T ss_pred EEccCCeEEECCCCCEEEEEEcCCCCCCC-------EEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccC-CeEEEEE
Confidence 34446678888999999999876433222 8898873 22 1 2221111111 12577655544 5678999
Q ss_pred ccceecCCEEEEEEc
Q psy5838 95 KNVQESDRGWYMCQV 109 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~ 109 (215)
.+++.+|++.|.|+.
T Consensus 76 s~lq~eD~A~YyC~~ 90 (259)
T 4f9l_D 76 SSLQPEDIATYYCQQ 90 (259)
T ss_dssp ESCCGGGCEEEEEEE
T ss_pred cccChhhCEEEEEee
Confidence 999999999999973
No 409
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=98.90 E-value=2.2e-08 Score=66.80 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+.+....... .+.|++..
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~~~~~~~----~v~Wyrq~ 41 (126)
T 2h32_A 7 PPAMSSALGTTIRLTCTLRNDHDIGVY----SVYWYQQR 41 (126)
T ss_dssp CSEEEEETTCCEEEEEEECTTSCGGGC----EEEEEEEC
T ss_pred CCCEEECCCCCEEEEEEecCCCccccc----eEEEEEEC
Confidence 447889999999999999864111111 19999964
No 410
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}
Probab=98.89 E-value=1e-08 Score=69.18 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=28.2
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+...|..+.+.+|++|+|.|.+.+. ... +.||++
T Consensus 20 ~v~Q~p~~~~v~~G~svtL~C~~s~~-~~~-------v~Wyrq 54 (134)
T 3kg5_A 20 RIWQSPRFIARKRGFTVKMHCYMNSA-SGN-------VSWLWK 54 (134)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCCT-TCC-------CEEEEE
T ss_pred EEEEeCCEEEEeCCCCEEEEEEECCC-Cce-------EEEEEE
Confidence 45666778999999999999999764 233 899997
No 411
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=98.89 E-value=1.3e-08 Score=66.76 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=46.5
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c-c--EEEeeec---ee--eeCCceEEEEc-CCceEEEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN---VI--TQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~---~~--~~~~~~~~~~~-~~~~~~l~i 94 (215)
..+.+.+|++|+|.|.+.+.... +. .+.|++... . + ++..... .. ...+|+....+ ......|.|
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (116)
T 1a2y_B 8 GPGLVAPSQSLSITCTVSGFSLT-GY----GVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKM 82 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCTT-SS----EEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred CCEEEeCCCcEEEEEEEcCCCcC-Cc----EEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEE
Confidence 35788999999999999854321 11 199998642 1 1 2222110 00 11356665543 234556666
Q ss_pred ccceecCCEEEEEEccC
Q psy5838 95 KNVQESDRGWYMCQVNT 111 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~~~ 111 (215)
.+++.+|+|.|.|.+.+
T Consensus 83 ~~~~~~Dsg~Y~C~~~~ 99 (116)
T 1a2y_B 83 NSLHTDDTARYYCARER 99 (116)
T ss_dssp CSCCGGGCEEEEEEEES
T ss_pred CCCCHHHCEEEEEEEec
Confidence 66666666666665543
No 412
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=98.89 E-value=8.5e-09 Score=66.92 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=24.6
Q ss_pred ceEEEeCCcEEEEEEeeccCCc--cceeeeEEEEEEecCCc
Q psy5838 26 NVTVTVGRDALLACVVDNLKGF--KGLRIGWQVAWVRVDTQ 64 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~--~~~~~~~~v~W~~~~~~ 64 (215)
.+.+.+|++|+|.|.+.+.+.+ .... +.|+++...
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~----v~W~k~~~~ 39 (110)
T 1ncn_A 3 KIQAYFNETADLPCQFANSQNQSLSELV----VFWQDQENL 39 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEE----EEEEETTCC
T ss_pred EEEEEeCCCEEEEeEeCCCCcCCCccEE----EEEEeCCCc
Confidence 4678899999999999754322 2222 899996543
No 413
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=98.89 E-value=1.2e-08 Score=76.29 Aligned_cols=38 Identities=11% Similarity=0.358 Sum_probs=32.1
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.|.+...+..+.+.+|++|+|.|.+.+.+.+. +.|+|+
T Consensus 138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~ 175 (256)
T 3umt_A 138 DIQLTQSPSSLSASLGERVSITCRASQDIGSN-------LNWLQQ 175 (256)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCCTTC-------EEEEEE
T ss_pred ccEEEcCCCeEEEECCCCEEEEEEEecCCCcE-------EEEEEE
Confidence 56677777788999999999999999877666 999995
No 414
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=98.89 E-value=3.7e-09 Score=75.26 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++
T Consensus 102 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-------v~W~~~~ 141 (194)
T 2a38_A 102 APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV-------VKFYRDG 141 (194)
T ss_dssp EEEEEEECCCCEEECTTEEEEEEEEEEEESCCE-------EEEEETT
T ss_pred CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCe-------EEEEECC
Confidence 456677777788899999999999999888877 9999943
No 415
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=98.89 E-value=1.3e-08 Score=67.19 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=44.7
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeee--c--e--eeeCCceEEEEc-CCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHH--N--V--ITQNPRISLTYN-DHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~--~--~--~~~~~~~~~~~~-~~~~~~l 92 (215)
|..+.+.+|++|+|.|.+.+.... .. .+.|++... .. ++.... . . ....+|+.+..+ ......|
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~-~~----~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (120)
T 1mfa_H 7 SGTVVARPGASVKMSCKASGYTFT-NY----WMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYM 81 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GS----EEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred CCCEEEeCCCCEEEEEEeeCcccc-cc----EEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEE
Confidence 456789999999999999753211 11 199998632 21 222111 0 0 011346655543 2244556
Q ss_pred EEccceecCCEEEEEEcc
Q psy5838 93 NIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.+++.+|+|.|.|.+.
T Consensus 82 ~I~~~~~~Dsg~Y~C~~~ 99 (120)
T 1mfa_H 82 ELSSLTSEDSAVYYCTRG 99 (120)
T ss_dssp EECSCCGGGCEEEEEEEE
T ss_pred EECCCCHHHCEEEEEEEe
Confidence 666666666666665543
No 416
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=98.88 E-value=1.6e-08 Score=67.25 Aligned_cols=82 Identities=22% Similarity=0.433 Sum_probs=44.9
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeec-ee----eeCCceEEEEcC-CceEEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHN-VI----TQNPRISLTYND-HRSWFLN 93 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~-~~----~~~~~~~~~~~~-~~~~~l~ 93 (215)
|..+.+.+|++|+|.|.+.+.... .. .+.|++... .. ++..... .. ...+|+.+..+. .....|.
T Consensus 7 p~~~~~~~G~~vtL~C~~s~~~~~-~~----~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~ 81 (124)
T 1yc7_A 7 SGGGSVQAGGSLRLSCAVSGSTYS-PC----TTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQ 81 (124)
T ss_dssp ECCEEECTTCCEEEEEEEESCCSS-CE----EEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEecCCCEEEEEEEeCCCcC-CC----EEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEE
Confidence 346889999999999999753211 11 299999642 21 2211110 00 113466555432 2445566
Q ss_pred EccceecCCEEEEEEcc
Q psy5838 94 IKNVQESDRGWYMCQVN 110 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~ 110 (215)
|.+++.+|+|.|.|.+.
T Consensus 82 I~~~~~~Dsg~Y~C~~~ 98 (124)
T 1yc7_A 82 MNSLQREDTGMYYCQIQ 98 (124)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ECCCCHHHCEEEEEEEE
Confidence 66666666555555443
No 417
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=98.88 E-value=2.5e-08 Score=70.92 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=55.1
Q ss_pred EEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeEEecCCCcceeeecCCcEEEEEEecc-cCCCe--EEEEeCCC
Q psy5838 127 LNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPY--VMWRREDG 202 (215)
Q Consensus 127 l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~ 202 (215)
|.|.+++ |.|.|.|.+.-. ....+.+.|.|..+|...... ..+..+.+|+.++|.|.+.+ .|.+. +.|++ ++
T Consensus 54 l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~-~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llr-G~ 129 (192)
T 1zxq_A 54 YLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILT-LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GN 129 (192)
T ss_dssp EEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEE-EESSEECTTSEEEEEEEECSCBCGGGEEEEEEE-TT
T ss_pred EEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEc-cCCccccCCCcEEEEEEeCCeECCCCcEEEEEc-CC
Confidence 6677777 678899998644 344567789998888755442 11235789999999999976 78774 89999 66
Q ss_pred cccc
Q psy5838 203 ANLS 206 (215)
Q Consensus 203 ~~~~ 206 (215)
+.+.
T Consensus 130 ~~l~ 133 (192)
T 1zxq_A 130 ETLH 133 (192)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6554
No 418
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=98.88 E-value=4e-09 Score=74.88 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
..|.+...+....+..|+++.|.|.+.+.+.+. +.|++++.
T Consensus 95 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-------v~W~~~~~ 135 (189)
T 2v44_A 95 QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNE 135 (189)
T ss_dssp CCCEEESCCCSEEEETTSCEEECCEEECSSCCE-------EEEEEEC-
T ss_pred cCCceeecCCcEEEeCCCCEEEEEEECcCCCCc-------EEEEECCc
Confidence 356676667778899999999999999888777 99999544
No 419
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=98.88 E-value=2e-08 Score=74.48 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+.+...+..+.+.+|++++|.|.+.+.+.+. +.|+|.
T Consensus 135 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~ 172 (247)
T 2ghw_B 135 ETTLTQSPATLSLSPGERATLSCRASQSVRSN-------LAWYQQ 172 (247)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCTTC-------EEEEEE
T ss_pred ceEEEccCCEEEecCCCcEEEEEEeCCCccce-------EEEEEE
Confidence 34455566778899999999999999887676 999994
No 420
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=98.88 E-value=2.4e-08 Score=74.59 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~ 61 (215)
.+.+...+....+.+|++|+|.|.+.+.+.+ . +.|+|+
T Consensus 141 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~ 179 (257)
T 3gkz_A 141 QIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH-------LYWYQQ 179 (257)
T ss_dssp CCCEECSCSEEEECTTCCEEEEEEESSCCCGGG-------EEEEEE
T ss_pred ceEEEcCCceEEEeCCCcEEEEEEEccCccceE-------EEEEEE
Confidence 4667777778899999999999999986665 5 999985
No 421
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=98.88 E-value=6.9e-09 Score=74.05 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
+...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..
T Consensus 107 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-------i~W~~-~~~~ 144 (197)
T 2j8h_A 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPV-------ITWQK-GQDL 144 (197)
T ss_dssp CBTTBEEEEEETTCCCEEEEEEEEESCCE-------EEEEE-SSCE
T ss_pred cccccCeEEEeCCCEEEEEEEEEecCCCc-------EEEEE-CCEE
Confidence 33334567788999999999999988877 99999 4443
No 422
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=98.87 E-value=2.1e-08 Score=66.29 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+.+.... +. .+.|+|..
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~Wyrq~ 40 (121)
T 1j05_H 7 SGAELVEPGASVKLSCTASGFNIK-DT----YMHWVKQR 40 (121)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GS----EEEEEEEC
T ss_pred CCCEEEeCCCcEEEEEEecCcccC-Cc----EEEEEEEC
Confidence 456789999999999999753221 11 19999964
No 423
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=98.87 E-value=1.6e-08 Score=66.83 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeec----ee--eeCCceEEEEc-CCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHN----VI--TQNPRISLTYN-DHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~----~~--~~~~~~~~~~~-~~~~~~l 92 (215)
|..+.+.+|++|+|.|.+.+.... +. .+.|++... .. ++..... .. ...+|+.+..+ ......|
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (120)
T 3b9v_A 7 SGGGLVQPGGSLRLSCAASGFNIK-DT----YIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYL 81 (120)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGG-GS----EEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred CCCEEEeCCccEEEEEEeeCcccc-cc----EEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEE
Confidence 346889999999999999753211 11 199999642 21 2221110 00 11245555543 1234555
Q ss_pred EEccceecCCEEEEEEcc
Q psy5838 93 NIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.+++.+|+|.|.|.+.
T Consensus 82 ~I~~~~~~Dsg~Y~C~~~ 99 (120)
T 3b9v_A 82 QMNSLRAEDTAVYYCARW 99 (120)
T ss_dssp EECSCCGGGCEEEEEEEE
T ss_pred EECCCCHHHCEEEEEEEE
Confidence 555555555555555443
No 424
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=98.87 E-value=1.8e-08 Score=66.81 Aligned_cols=80 Identities=14% Similarity=0.374 Sum_probs=46.3
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c-c--EEEeeec----ee--eeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN----VI--TQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~----~~--~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.. ... +.|+|... . + ++..... .. ...+|+.+..+ ......
T Consensus 10 ~~~~~~~G~~vtL~C~~~~~~~~~~~-------v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 82 (123)
T 2p45_B 10 GGGLVQAGGSLRLSCAASGYAYTYIY-------MGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVY 82 (123)
T ss_dssp CCEEEETTCCEEEEEEEESCSSCCSE-------EEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEE
T ss_pred CCEEEeCCCCEEEEEEecCccCcCcE-------EEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEE
Confidence 368899999999999997532 233 99999642 1 1 2222110 00 11346665543 234556
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+.+
T Consensus 83 L~I~~~~~~Dsg~Y~C~~~~ 102 (123)
T 2p45_B 83 LQMDSLKPEDTATYYCAAGG 102 (123)
T ss_dssp EEESSCCGGGCEEEEEEESS
T ss_pred EEECCCCHHHCEEEEEEEEe
Confidence 66666666666666665543
No 425
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A
Probab=98.87 E-value=9.7e-09 Score=74.25 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=47.4
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc--EEEeeeceeeeCCceEEEEc-CCceEEEEEc
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT--ILSIHHNVITQNPRISLTYN-DHRSWFLNIK 95 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~ 95 (215)
+...|..+.+.+|++|+|.|.+.+. ... +.|+|+. +.. ++..........+|+....+ ......|.|.
T Consensus 6 V~Q~p~~v~v~~G~svtL~C~~s~~-~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~ 77 (205)
T 3qjh_A 6 VEQSPSALSLHEGTGSALRCNFTTT-MRA-------VQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIR 77 (205)
T ss_dssp BEEECSEEEEETTCCEEEEEECSSC-EEE-------EEEEEEC-CCCEEEEEEESSEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EEEeCCEEEEeCCCCEEEEEEEECC-cce-------EEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEEe
Confidence 4455677899999999999999865 222 9999964 222 11111111123456655432 2345556665
Q ss_pred cceecCCEEEEEEc
Q psy5838 96 NVQESDRGWYMCQV 109 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~ 109 (215)
+++.+|+|.|+|.+
T Consensus 78 ~l~~~DsG~Y~Cav 91 (205)
T 3qjh_A 78 DAQLEDSGTYFCAA 91 (205)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccccccCeEEEEEE
Confidence 55555555555543
No 426
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=98.86 E-value=6.6e-09 Score=67.99 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC--cc--EEEeeec---ee--eeCCceEEEEc-CCceEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT--QT--ILSIHHN---VI--TQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~--~~--~~~~~~~---~~--~~~~~~~~~~~-~~~~~~ 91 (215)
+..+.+.+|++|+|.|.+.+.. ... +.|++... .+ ++..... .. ...+|+.+..+ ......
T Consensus 7 ~~~~~~~~G~~vtL~C~~~~~~~~~~~-------v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 79 (114)
T 1sjv_A 7 SGGGLVQAGESLKLSCAASGNTFSGGF-------MGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVY 79 (114)
T ss_dssp -CCCCCCTTCCEEEEECCCC-----CC-------EEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEE
T ss_pred CCCEEEcCCCCEEEEEEEcCccccCCe-------EEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEE
Confidence 3467888999999999987532 233 99999642 11 2222111 00 12356655543 234456
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+.+
T Consensus 80 L~I~~~~~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 80 LEMNSLEPEDTAVYYCYTHY 99 (114)
T ss_dssp EEECSCCGGGCSEEEEEECC
T ss_pred EEECCCCHHHCEEEEEeEEc
Confidence 66666666666666665543
No 427
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*
Probab=98.86 E-value=7.7e-09 Score=68.14 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=47.5
Q ss_pred CCceEEEeCCcEEEEEEeeccCC---ccceeeeEEEEEEecCCc-c-EEEeee-ce---eeeCCceEEEEc-CCceEEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKG---FKGLRIGWQVAWVRVDTQ-T-ILSIHH-NV---ITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~---~~~~~~~~~v~W~~~~~~-~-~~~~~~-~~---~~~~~~~~~~~~-~~~~~~l~ 93 (215)
|..+.+.+|++|+|.|.+..... .... .+.|+++... . ++.... .. ....+|+.+..+ .....+|.
T Consensus 7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~----~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (119)
T 1qfo_A 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGI----TAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLL 82 (119)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CC----EEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCEEEEecCCcEEEEEEeeCCCccCCCCCe----EEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEE
Confidence 56789999999999999975321 1112 1899997432 1 222111 00 112356655432 12445666
Q ss_pred EccceecCCEEEEEEccC
Q psy5838 94 IKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~ 111 (215)
|.+++.+|+|.|.|.+..
T Consensus 83 I~~v~~~Dsg~Y~C~v~~ 100 (119)
T 1qfo_A 83 LKDLKPEDSGTYNFRFEI 100 (119)
T ss_dssp ECSCCGGGCEEEEEEEEC
T ss_pred EccCCcccCceEEEEEEe
Confidence 666666666666665544
No 428
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=98.86 E-value=1e-08 Score=76.38 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc----cceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF----KGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~----~~~~~~~~v~W~~~ 61 (215)
.|.+...+....+.+|++|+|.|.+.+.+.+ . +.|+|+
T Consensus 133 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-------v~W~r~ 174 (253)
T 3uzq_A 133 ELVMTQTPASLAVSLGQRATISCRASENVDRYGNSF-------MHWYQQ 174 (253)
T ss_dssp -CCEEEECSEEEECTTSCEEEEEEESSCCEETTEEC-------EEEEEE
T ss_pred cceEECcCCeEEEeCCCCEEEEEEecCccccCCCcE-------EEEEEE
Confidence 4666667778899999999999999886654 4 999985
No 429
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=3.9e-09 Score=75.00 Aligned_cols=40 Identities=28% Similarity=0.515 Sum_probs=33.5
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..|.+...+....+..|+++.|.|.+.+.+.+. +.|++++
T Consensus 99 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-------v~W~~~~ 138 (192)
T 2iep_A 99 MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPS-------VSWIKGD 138 (192)
T ss_dssp EEEEEEECCCCEEEETTSCEEECCEEEEESCCE-------EEEEETT
T ss_pred eCCccccCCcceEEeCCCcEEEEEEEeccCCce-------EEEEeCC
Confidence 356777777788999999999999999888776 9999943
No 430
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B
Probab=98.86 E-value=1.8e-08 Score=66.79 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=43.9
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeee-c-ee----eeCCceEEEEc-CCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHH-N-VI----TQNPRISLTYN-DHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~-~-~~----~~~~~~~~~~~-~~~~~~l 92 (215)
+..+.+.+|++|+|.|.+.+.... +. .+.|+++. +.. ++.... + .. ...+|+....+ ......|
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (122)
T 1xiw_D 7 SGPELVKPGASMKISCKASGYSFT-GY----TMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYM 81 (122)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGG-GE----EEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred CCCEEEeCCCcEEEEEEeeCcccC-CC----EEEEEEECCCCCcEEEEEEeccCCceeeCcccCCcEEEEEecCCCEEEE
Confidence 345788999999999999753211 12 29999964 222 222210 0 00 11345655543 1234556
Q ss_pred EEccceecCCEEEEEEc
Q psy5838 93 NIKNVQESDRGWYMCQV 109 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~ 109 (215)
.|.+++.+|+|.|.|.+
T Consensus 82 ~I~~~~~~Dsg~Y~C~~ 98 (122)
T 1xiw_D 82 ELLSLTSEDSAVYYCAR 98 (122)
T ss_dssp EECSCCGGGCEEEEEEE
T ss_pred EECCCCHHHCEEEEEEE
Confidence 66555555555555544
No 431
>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}
Probab=98.86 E-value=3.2e-08 Score=67.13 Aligned_cols=79 Identities=16% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeee-c--e---eeeCCceEEEEcC-CceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHH-N--V---ITQNPRISLTYND-HRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~-~--~---~~~~~~~~~~~~~-~~~~ 90 (215)
+..+.+.+|++|+|.|.+.+.. ... +.||++.. .. ++.... + . ....+|+....+. ....
T Consensus 7 p~~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~ 79 (139)
T 2d7t_H 7 SGAEVKKPGASVKVSCKASGYTFTGNY-------MHWVRQAPGQGLEYMGWINPKSGDTNYAQKFQGRVTMTRDTSISTV 79 (139)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTSCCEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEeCCcccCCE-------EEEEEECCCCCCEEEEEEEcCCCceeeCcccCCeEEEEEeCCCCEE
Confidence 3467889999999999997432 223 99999742 11 222211 0 0 0113455555431 2345
Q ss_pred EEEEccceecCCEEEEEEc
Q psy5838 91 FLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~ 109 (215)
.|.|.+++.+|+|.|.|.+
T Consensus 80 sL~I~~~~~~Dsg~Y~C~~ 98 (139)
T 2d7t_H 80 YMEVRRLRSDDTAVYYCAT 98 (139)
T ss_dssp EEEECSCCGGGCEEEEEEE
T ss_pred EEEECcCCHHHCEEEEEEE
Confidence 5555555555555555544
No 432
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=98.85 E-value=2.3e-08 Score=66.30 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+.+.... +. .+.|++..
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~W~rq~ 40 (123)
T 2wzp_D 7 SGGGLVQAGGSLRLSCTASRRTGS-NW----CMGWFRQL 40 (123)
T ss_dssp EECEEEETTCCEEEEEEESSCCSS-SE----EEEEEECC
T ss_pred CCCEEEcCCCcEEEEEEecCCCcc-Cc----EEEEEEEC
Confidence 346889999999999999753211 12 29999964
No 433
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=98.85 E-value=5.6e-09 Score=67.36 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..|.+...|.. .+.+|++|+|.|...+.+ .. +.|+|+
T Consensus 4 ~kP~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~-------~~w~k~ 40 (105)
T 2vsd_A 4 PQPSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AW-------VQLWLN 40 (105)
T ss_dssp CCCEEEEESCS-SCCTTCEEEEEEECCSSC-EE-------EEEEET
T ss_pred CCCEEEeCCCC-CcCcCCCEEEEEEcCCCC-cE-------EEEEEC
Confidence 35666665555 688999999999987542 32 789994
No 434
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}
Probab=98.84 E-value=1.7e-08 Score=65.22 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+.... ... +.|+++.
T Consensus 4 p~~v~~~~G~svtl~C~~s~~~~~~~-------~~Wyrq~ 36 (106)
T 2frg_P 4 PEVLQAPVGSSILVQCHYRLQDVKAQ-------KVWCRFL 36 (106)
T ss_dssp CEEEEECTTCCEEEEEECCGGGTTSE-------EEEEEEE
T ss_pred CcEEEEecCCcEEEEeEecCCcccCc-------EEEEECC
Confidence 4567888999999999987332 222 7899964
No 435
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=98.84 E-value=3.2e-08 Score=74.01 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCc-----cceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGF-----KGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-----~~~~~~~~v~W~~~ 61 (215)
.|.+...+..+.+.+|++++|.|.+.+.+.+ . +.|+|+
T Consensus 121 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~-------v~W~k~ 163 (256)
T 1nqb_A 121 DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY-------LEWYLQ 163 (256)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC-------EEEEEE
T ss_pred cccEEecCcEEEEecCCcEEEEeEecCcccccccceE-------EEEEEE
Confidence 3555556777889999999999999876654 5 999995
No 436
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*
Probab=98.84 E-value=7.1e-09 Score=68.04 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCceEEEeCCcEEEEEEeec-c-CCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDN-L-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~-~-~~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+.. . .... +.|+++.
T Consensus 3 ~~~v~~~~G~~vtL~C~~~~~~~~~~~-------v~W~r~~ 36 (116)
T 3bia_X 3 EDTIIGFLGQPVTLPCHYLSWSQSRNS-------MCWGKGS 36 (116)
T ss_dssp CEEEEEETTSCEEECCBCTTCCTTTCE-------EEEEESS
T ss_pred ccEEEEeeCCcEEEEEEeeCCCCCeEE-------EEEeeec
Confidence 45688999999999999873 2 2222 8999965
No 437
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.84 E-value=2.3e-08 Score=66.73 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=46.3
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeeec---e--eeeCCceEEEEc-CCceEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHHN---V--ITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~~---~--~~~~~~~~~~~~-~~~~~~ 91 (215)
|..+.+.+|++|+|.|.+.+.. ... +.|++... .. ++..... . ....+|+....+ ......
T Consensus 7 p~~~~~~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~s 79 (127)
T 1kxt_B 7 SGGGSVQAGGSLRLSCAASGYTFSSYP-------MGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAY 79 (127)
T ss_dssp ECCEECCTTCCEEEEEEEC--CCSSSC-------EEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEE
T ss_pred CCCEEEeCCCCEEEEeEecCCCccceE-------EEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEE
Confidence 3467888999999999997532 233 99999642 21 2221110 0 012356666554 234566
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+..
T Consensus 80 L~I~~~~~~Dsg~Y~C~~~~ 99 (127)
T 1kxt_B 80 LQMDSLKPEDTAVYYCAAGP 99 (127)
T ss_dssp EEECSCCGGGCEEEEEEECS
T ss_pred EEECcCCHHHCEEEEEEEEc
Confidence 66666666666666665543
No 438
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=98.84 E-value=7.5e-09 Score=67.72 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCceEEEeCCcEEEEEEeecc-CCcc-ceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNL-KGFK-GLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~-~~~~-~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++++|.|.+... +.+. ... +.|+|++
T Consensus 7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~----v~W~k~~ 43 (118)
T 3udw_C 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQ----LTWARHG 43 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTCCCEEEE----EEEEETT
T ss_pred CCeEEEeeCCcEEEEEEeECCCCCCCceEE----EEEEEcC
Confidence 345889999999999999532 2222 112 8999963
No 439
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=98.84 E-value=2.5e-08 Score=65.51 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=25.1
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|..+.+.+|++|+|.|.+.+........ +.|+|+.
T Consensus 6 p~~~~~~~G~~v~L~C~~~~~~~~~~~~----v~Wyrq~ 40 (117)
T 1dqt_A 6 PSVVLASSHGVASFPCEYSPSHNTDEVR----VTVLRQT 40 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEE----EEEEEEC
T ss_pred CceEEEeCCCeEEEEEEeeCCCCCCccE----EEEEecC
Confidence 4567888999999999997443321111 8999975
No 440
>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H
Probab=98.83 E-value=1.6e-08 Score=67.59 Aligned_cols=78 Identities=19% Similarity=0.448 Sum_probs=43.2
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeeec------eeeeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHHN------VITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.. ... +.|+|... .. ++..... .....+|+.+..+ ......
T Consensus 8 ~~~~~~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 80 (127)
T 1mqk_H 8 GGDLVQPGGSLKLSCAASGFTFSSYT-------MSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLY 80 (127)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSC-------EEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEE
T ss_pred CCEEEcCCCCEEEEEEeCCCccCCcE-------EEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEE
Confidence 367889999999999997532 223 99999642 21 2221110 0011345655543 223455
Q ss_pred EEEccceecCCEEEEEEc
Q psy5838 92 LNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~ 109 (215)
|.|.+++.+|+|.|.|.+
T Consensus 81 L~I~~~~~~Dsg~Y~C~~ 98 (127)
T 1mqk_H 81 LQMSSLKSEDTAMYYCVR 98 (127)
T ss_dssp EEECSCCGGGCEEEEEEE
T ss_pred EEECCCCHHHCEEEEEEE
Confidence 555555555555555544
No 441
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}
Probab=98.82 E-value=4.5e-09 Score=71.24 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.5
Q ss_pred CCceEEEeCCcEEEEEEee-ccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~-~~~~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+. +..... +.|+++.
T Consensus 6 p~~v~v~~G~~vtL~C~~s~~~~~~~-------v~Wyrq~ 38 (137)
T 3bdb_A 6 LHVKTVKRGENVTMECSMSKVTNKNN-------LAWYRQS 38 (137)
T ss_dssp CEECCCCTTCEECCCCBCTTCCCGGG-------BEEEEEC
T ss_pred CCeEEEcCCCCEEEEeecCCCcCcce-------EEEEEEC
Confidence 4567788999999999987 544334 8999964
No 442
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=98.82 E-value=1.7e-08 Score=75.43 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
..|.+...+....+.+|++|+|.|.+.+. .+. +.|+|.
T Consensus 136 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~-------v~W~k~ 173 (256)
T 3tf7_C 136 SEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY-------MYWYRQ 173 (256)
T ss_dssp --CCEEESCSEEEEETTCCEEECEEECSC-CSE-------EEEEEE
T ss_pred CccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE-------EEEEEE
Confidence 45677777888889999999999999875 444 999985
No 443
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=98.82 E-value=5.9e-09 Score=75.62 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=32.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
.|.+...+....+..|+.+.|.|.+ .+.+.+. +.|++ ++..
T Consensus 108 ~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~-------v~W~~-~g~~ 149 (217)
T 2vr9_A 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPT-------LIWIK-DGVP 149 (217)
T ss_dssp CCSCSBCCCCEEECTTSCEEECCBCCCEESCCE-------EEEEE-TTEE
T ss_pred CCCcEECCCccEEcCCCeEEEEEECCCCCCCCe-------EEEEE-CCcC
Confidence 4556666778889999999999998 7777777 99999 4443
No 444
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.82 E-value=8.2e-09 Score=72.94 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.3
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccC-CccceeeeEEEEEEe
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLK-GFKGLRIGWQVAWVR 60 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~-~~~~~~~~~~v~W~~ 60 (215)
..|.+...+....+.+|+++.|.|.+.+.+ .+. +.|++
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~-------i~W~~ 120 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTD-------WAWYK 120 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCE-------EEEEE
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCe-------EEEEE
Confidence 467777777778899999999999999887 566 99999
No 445
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=98.82 E-value=7.2e-10 Score=73.50 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=32.8
Q ss_pred cCCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 15 ~~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+|.|.. +....+.+|+++.|.|.+.+.|.+. .+.|++++
T Consensus 12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~------~i~W~~~~ 52 (122)
T 2cry_A 12 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPD------RIAWSWKE 52 (122)
T ss_dssp CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCS------EEEEESSS
T ss_pred ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCc------EeEEEECC
Confidence 34677777 7788889999999999999888763 28899953
No 446
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=98.82 E-value=1.1e-08 Score=79.66 Aligned_cols=79 Identities=16% Similarity=0.371 Sum_probs=56.5
Q ss_pred CeEEEEEcccCCCCCeEEEEEeecCC-CcceeeEEEEEc----CCeEEecCCCcceeeecCCcEEEEEEeccc-CC-CeE
Q psy5838 123 RSWFLNIKNVQESDRGWYMCQVNTDP-MRSRQGYLQVVV----PPSIIDKDTSTDLVVREQANVTLNCKAQGY-PE-PYV 195 (215)
Q Consensus 123 ~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i 195 (215)
....|.|.+++.+|+|.|.|.+.+.. .......|.|.. +|.+..... ...+.+|+.+.|.|.+.|. |. +.+
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~v 154 (344)
T 1za6_B 77 STAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP--SSKSTSGGTAALGCLVKDYFPEPVTV 154 (344)
T ss_dssp TEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC--SCTTTSSSEEEEEEEEEEEBSSCCCE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc--cccccCCCcEEEEEEEeeEECCCeEE
Confidence 34679999999999999999997632 223445677762 444443221 2235689999999999986 65 699
Q ss_pred EEEeCCCcc
Q psy5838 196 MWRREDGAN 204 (215)
Q Consensus 196 ~W~~~~~~~ 204 (215)
.|++ +|..
T Consensus 155 ~W~k-~g~~ 162 (344)
T 1za6_B 155 SWNS-GALT 162 (344)
T ss_dssp EETT-TTBC
T ss_pred EEec-CCcc
Confidence 9999 6654
No 447
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=98.82 E-value=1.1e-08 Score=72.00 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred ecCCEEEEEEc-cCCCceEEEEccC--------CeEEEEEcccCCCCCeEEEEEeecCC--CcceeeEEEEEcCCe
Q psy5838 99 ESDRGWYMCQV-NTNPRISLTYNDH--------RSWFLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPS 163 (215)
Q Consensus 99 ~~d~G~Y~C~~-~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~ 163 (215)
..+.-...|.+ .+.|.+.+.|... .+..|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|..+|.
T Consensus 99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 99 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp TTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred CCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 45566778888 4566778888432 35679999999999999999997632 334556788877664
No 448
>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A
Probab=98.82 E-value=2e-08 Score=67.03 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c-c--EEEee-----e-ce---e--eeCCceEEEEc-CC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q-T--ILSIH-----H-NV---I--TQNPRISLTYN-DH 87 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~-~--~~~~~-----~-~~---~--~~~~~~~~~~~-~~ 87 (215)
|..+.+.+|++|+|.|.+.+.... +. .+.|+++.. . + ++... . +. . ...+|+....+ ..
T Consensus 7 p~~~~v~~G~~vtL~C~~s~~~~~-~~----~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~ 81 (127)
T 1i3u_A 7 SGGGLVQAGDSLKLSCEASGDSIG-TY----VIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAK 81 (127)
T ss_dssp ESCEECCTTCCEEEEEEEESSCGG-GS----EEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGG
T ss_pred CCCEEEeCCCcEEEEEEecCCCcC-Cc----EEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcCCC
Confidence 346788999999999999753211 11 199999642 1 1 22221 0 00 0 11246655543 22
Q ss_pred ceEEEEEccceecCCEEEEEEcc
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
....|.|.+++.+|+|.|.|.+.
T Consensus 82 ~~~~L~I~~~~~~Dsg~Y~C~~~ 104 (127)
T 1i3u_A 82 NTVNLQMNSLKPEDTAVYYCAAK 104 (127)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEECCCChhhCEEEEEEEE
Confidence 44556666666666666555543
No 449
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.81 E-value=6.6e-09 Score=77.99 Aligned_cols=129 Identities=15% Similarity=-0.018 Sum_probs=52.8
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.+...+. ..+.+|++|+|.|...+.+ +. +.|+|++ ..+... .+......+...
T Consensus 106 ~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~-------~~w~k~g-~~~~~~--------~~~~~~~~~~~~------ 161 (257)
T 1b6u_A 106 EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DM-------YHLSREG-EAHERR--------FSAGPKVNGTFQ------ 161 (257)
T ss_dssp CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SE-------EEEEETT-SSCEEC--------CBCBCCSSSCCB------
T ss_pred CCcceEccCC-CccCCCCEEEEEEeCCCCC-cE-------EEEEECC-cccCcc--------cccccccCCcee------
Confidence 3456655544 3578999999999987653 34 8999954 332110 000000000011
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecC------CCcceeeEEEEEcCCeEEecCC
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD------PMRSRQGYLQVVVPPSIIDKDT 169 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~------~~~~~~~~l~v~~~p~~~~~~~ 169 (215)
..|.|.+++ |+|.|+|.+.+. ...+..+.|.|..+|.... +.
T Consensus 162 -----------------------------~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~-p~ 209 (257)
T 1b6u_A 162 -----------------------------ADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSW-PS 209 (257)
T ss_dssp -----------------------------EEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------
T ss_pred -----------------------------EEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCC-CC
Confidence 235566676 888888887532 2345556778877776552 12
Q ss_pred CcceeeecCCcEEEEEEecccCCCeEEEEeCC
Q psy5838 170 STDLVVREQANVTLNCKAQGYPEPYVMWRRED 201 (215)
Q Consensus 170 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~ 201 (215)
+.......|..+.|.|.+ |.+.+.+.|+..|
T Consensus 210 ~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 210 PTEPSSETGNPRHLHAAA-EQKLISEEDLNLD 240 (257)
T ss_dssp --------------------------------
T ss_pred CcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence 223335678999999766 5566788998854
No 450
>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*
Probab=98.81 E-value=2.4e-08 Score=66.36 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=23.8
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+.... +. .+.|++..
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~-~~----~v~Wyrq~ 40 (124)
T 1dlf_H 8 GGGLVQPGGSMKLSCATSGFTFS-DA----WMDWVRQS 40 (124)
T ss_dssp CCCEECTTCCEEEEEEEESSCTT-TC----EEEEEEEE
T ss_pred CCEEEcCCCCEEEEeECCCccCC-CC----eEEEEEEC
Confidence 36788999999999999753211 11 19999864
No 451
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=98.81 E-value=3.4e-08 Score=75.32 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccc---eeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKG---LRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~---~~~~~~v~W~~~~ 62 (215)
.+.+...+..+.+.+|++++|.|.+.+.+.+.+ .. +.|+|+.
T Consensus 159 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~----v~W~k~~ 203 (291)
T 2gki_A 159 DLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNY----LAWYQQK 203 (291)
T ss_dssp CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEEC----EEEEEEC
T ss_pred cceEEcCCCEEEEcCCCcEEEEEEcCCcccccccccee----EEEEEEC
Confidence 344566677788999999999999987655411 11 9999963
No 452
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A
Probab=98.81 E-value=5.3e-09 Score=69.80 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=25.7
Q ss_pred CCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEec
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRV 61 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~ 61 (215)
+..+.+.+|++|+|.|.+...+.+ ... .+.|++.
T Consensus 9 p~~v~~~~G~~v~L~C~~~~~~~~~~~~----~v~W~k~ 43 (128)
T 3r0n_A 9 LPEVRGQLGGTVELPCHLLPPVPGLYIS----LVTWQRP 43 (128)
T ss_dssp CSEEECCTTSCEEECCEEESCCTTCEEE----EEEEECT
T ss_pred CCeEEEEcCCCEEEEEEeecCCCCCcEE----EEEEEEe
Confidence 457888999999999999876543 212 2899995
No 453
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=98.80 E-value=3.3e-08 Score=65.66 Aligned_cols=84 Identities=18% Similarity=0.422 Sum_probs=48.4
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c---cEEEeeec-e---e--eeCCceEEEEcC-
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q---TILSIHHN-V---I--TQNPRISLTYND- 86 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~---~~~~~~~~-~---~--~~~~~~~~~~~~- 86 (215)
+..++ .+.+.+|++|+|.|.+.+.. ... +.||++.. . .++..... . . ...+|+....+.
T Consensus 6 l~q~~-~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~ 77 (123)
T 3k1k_C 6 LVESG-GALVQPGGSLRLSCAASGFPVNRYS-------MRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDA 77 (123)
T ss_dssp EEEEC-CCEECTTCCEEEEEEEESSCTTTSC-------EEEEEECSSSCCEEEEEECSSSSCEEECTTTTTTEEEEEETT
T ss_pred EEecC-CEEECCCCCEEEEEEeeCCcccccE-------EEEEEECCCCCCEEEEEEEcCCCceeeCccccccEEEEEeCC
Confidence 33344 36888999999999997542 223 89998642 1 12222111 0 0 123566665542
Q ss_pred CceEEEEEccceecCCEEEEEEccC
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~~ 111 (215)
.....|.|.+++.+|+|.|.|.+..
T Consensus 78 ~~~~sL~I~~~~~~Dsg~Y~Ca~~~ 102 (123)
T 3k1k_C 78 RNTVYLQMNSLKPEDTAVYYCNVNV 102 (123)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CCEEEEEECCCChhhCEEEEEEEec
Confidence 3456677777776666666665543
No 454
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K
Probab=98.80 E-value=4.1e-08 Score=66.45 Aligned_cols=80 Identities=15% Similarity=0.412 Sum_probs=44.6
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c-c--EEEeeec----ee--eeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN----VI--TQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~----~~--~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.. ... +.|+++.. . + ++..... .. ...+|+....+ .....
T Consensus 7 p~~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~ 79 (137)
T 1rjc_A 7 SGGGSVQAGQSLRLSCATSGATSSSNC-------MGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTL 79 (137)
T ss_dssp BCCEEECTTCCEEEEEECC-CTTTCSE-------EEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEE
T ss_pred cCCEEEecCCCEEEEEEecCCcCCCcE-------EEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEE
Confidence 4468899999999999997532 223 99999642 1 1 2222110 00 11356665543 23445
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
+|.|.+++.+|+|.|.|.+.
T Consensus 80 sL~I~~~~~~Dsg~Y~C~~~ 99 (137)
T 1rjc_A 80 YLQMNSLKPEDTAMYYCAAD 99 (137)
T ss_dssp EEEECSCCGGGCEEEEEEEC
T ss_pred EEEECCCCHHHCEEEEEEEE
Confidence 66666666666666666544
No 455
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=98.80 E-value=4.6e-08 Score=66.14 Aligned_cols=83 Identities=16% Similarity=0.328 Sum_probs=47.2
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c---cEEEeee-ce-----eeeCCceEEEEc-
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q---TILSIHH-NV-----ITQNPRISLTYN- 85 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~---~~~~~~~-~~-----~~~~~~~~~~~~- 85 (215)
.+..++..+ +.+|++|+|.|.+.+.. ... +.|+++.. . .++.... .. ....+|+.+..+
T Consensus 5 ~v~Q~p~~~-v~~G~sVtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~~Rfs~~~~~ 76 (137)
T 3lh2_H 5 QLVQSGAEV-KRPGSSVTVSCKASGGSFSTYA-------LSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR 76 (137)
T ss_dssp EEEECCCEE-ECSSCCEEEEEEEESSCSTTSC-------EEEEEECTTCCCEEEEEEEGGGTEEEECTTTTTTEEEEEET
T ss_pred eEEECCCEE-EcCCCCEEEEEEecCCcccccE-------EEEEEECCCCCCEEEEEEEcCCCccccCcccCCcEEEEecC
Confidence 345555555 89999999999997532 223 89998632 1 1222111 10 012356666543
Q ss_pred CCceEEEEEccceecCCEEEEEEc
Q psy5838 86 DHRSWFLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 86 ~~~~~~l~i~~~~~~d~G~Y~C~~ 109 (215)
.....+|.|.+++.+|+|.|.|.+
T Consensus 77 ~~~~~sLtI~~lq~~Dsg~Y~C~~ 100 (137)
T 3lh2_H 77 STSTAYLELNSLRPEDTAVYYCAR 100 (137)
T ss_dssp TTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEEEECCCChhhCEEEEEEE
Confidence 334566666666666666666643
No 456
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=98.80 E-value=4.5e-08 Score=67.15 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=45.4
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-cc---EEEeeec------eeeeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-QT---ILSIHHN------VITQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~ 90 (215)
+..+.+.+|++|+|.|.+.... ... +.||++.. +. ++..... .....+|+.+..+ .....
T Consensus 10 p~~v~v~~G~sVtL~C~~s~~~~~~~~-------v~WyrQ~~g~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~ 82 (149)
T 3u6r_H 10 SGAEVKKPGSSVKVSCQVFGDTFSRYT-------IQWLRQAPGQGPEWMGNIIPVYNTPNYAQKFQGRLSITADDSTSTA 82 (149)
T ss_dssp CCCEEECTTCCEEEEEEEEESCCCTTT-------EEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEE
T ss_pred CCCEEEcCCCCEEEEeEeeCCCcCCce-------EEEEEECCCCCCEEEEEEecCCCccccCcccCCCEEEEecCCCCEE
Confidence 4578899999999999987532 223 89998642 11 2222100 0112356665543 23455
Q ss_pred EEEEccceecCCEEEEEEc
Q psy5838 91 FLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~ 109 (215)
.|.|.+++.+|+|.|.|.+
T Consensus 83 sL~I~~lq~~Dsg~Y~Ca~ 101 (149)
T 3u6r_H 83 YMELSSLRSEDTAVYFCAR 101 (149)
T ss_dssp EEEECSCCGGGCEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEE
Confidence 6666666666666666644
No 457
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=98.80 E-value=2.2e-08 Score=74.37 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEEEe---e--ec----eeeeCCceEEEEcC-
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTILSI---H--HN----VITQNPRISLTYND- 86 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~~~---~--~~----~~~~~~~~~~~~~~- 86 (215)
+...+....+.+|++++|.|.+.+.+ .+. +.|+|+. +..+... . .. ......|+.+..+.
T Consensus 134 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 206 (250)
T 3esu_F 134 QLQQSGPELVKPGASVKISCKDSGYAFSSSW-------MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS 206 (250)
T ss_dssp -CEECCCEEECTTCCEEEEEECCSTTGGGSE-------EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG
T ss_pred EEecCCceEEcCCceEEEEEEecCCcccCCE-------EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC
Confidence 44445678899999999999998754 344 9999962 2222111 0 00 00112455555432
Q ss_pred CceEEEEEccceecCCEEEEEEcc
Q psy5838 87 HRSWFLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 87 ~~~~~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.....|.|.+++.+|+|.|+|.+.
T Consensus 207 ~~~~~L~I~~v~~~DsG~Y~C~~~ 230 (250)
T 3esu_F 207 SSTAYMQLSSLTSVDSAVYFCARS 230 (250)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEEEECCCCcccCEEEEEEEe
Confidence 244456666666666666666554
No 458
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E
Probab=98.79 E-value=3.2e-08 Score=66.70 Aligned_cols=81 Identities=14% Similarity=0.333 Sum_probs=43.1
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-c-c--EEEeeec----ee--eeCCceEEEEc-CCceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN----VI--TQNPRISLTYN-DHRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~----~~--~~~~~~~~~~~-~~~~~~l 92 (215)
|..+.+.+|++|+|.|.+.+.... .. .+.|+++.. . + ++..... .. ...+|+....+ .....+|
T Consensus 7 p~~~~v~~G~~vtL~C~~s~~~~~-~~----~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL 81 (134)
T 1zvh_A 7 SGGGSVQAGGSLRLSCAASGYIAS-IN----YLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYL 81 (134)
T ss_dssp ECCEEECTTCCEEEEEEEEESGGG-EE----EEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEE
T ss_pred CCCEEEccCCCEEEEEEeCCCCcC-Cc----EEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEE
Confidence 346889999999999999753211 11 289999642 1 1 2221110 00 11245555543 2244555
Q ss_pred EEccceecCCEEEEEEc
Q psy5838 93 NIKNVQESDRGWYMCQV 109 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~ 109 (215)
.|.+++.+|+|.|.|.+
T Consensus 82 ~I~~~~~~DsG~Y~C~~ 98 (134)
T 1zvh_A 82 QMNSLKPEDTALYYCAA 98 (134)
T ss_dssp EECSCCGGGCEEEEEEE
T ss_pred EECCCCHHHCEEEEEEE
Confidence 55555555555555544
No 459
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=98.79 E-value=1.4e-08 Score=75.96 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.8
Q ss_pred cccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 19 ~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.+...+..+.+.+|++++|.|.+.+.+.+. +.|+|+
T Consensus 141 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-------v~W~k~ 176 (257)
T 1f3r_B 141 KLTQSPSLLSASVGDRVTLSCKGSQNINNY-------LAWYQQ 176 (257)
T ss_dssp CSCEETSEECCCTTCCEEEEEECSSCCBTC-------EEEEEE
T ss_pred EEEccCCEEEEcCCCCEEEEEEECCcCCCc-------EEEEEE
Confidence 344556677788999999999998876666 999994
No 460
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=98.79 E-value=1.1e-08 Score=73.42 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|.+...+ ...+.+|++++|.|.+.+. .+. +.|+|++
T Consensus 101 ~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~-------v~W~k~g 137 (198)
T 1ugn_A 101 KPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDG-------FILCKEG 137 (198)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEECSSC-CSE-------EEEEEC-
T ss_pred CCccccCC-ccccCCCCcEEEEEecCCC-CcE-------EEEEECC
Confidence 34444333 3678899999999999887 455 9999954
No 461
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=98.79 E-value=3.2e-08 Score=65.91 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=26.3
Q ss_pred ccCCCCceEEEeCCcEEEEEEeecc--CCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNL--KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~--~~~~~~~~~~~v~W~~~~ 62 (215)
+..+|..+.+.+|++++|.|.+.+. .... +.|+|+.
T Consensus 7 v~Q~p~~vs~~~G~svtL~C~~s~~~~~~~~-------~~WyrQ~ 44 (127)
T 1q8m_A 7 TKLTEEKYELKEGQTLDVKCDYTLEKFASSQ-------KAWQIIR 44 (127)
T ss_dssp EEECEEEEEEETTCCEEEEEECCCGGGTTSC-------EEEEEEE
T ss_pred EEecCCEEEEecCCCEEEEEEECCcccCCCE-------EEEEEeC
Confidence 3445667899999999999998732 2222 7899974
No 462
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=98.79 E-value=7.1e-08 Score=63.70 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=43.9
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeeec------eeeeCCceEEEEc-CCceEEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHHN------VITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~~l~ 93 (215)
..+.+.+|++|+|.|.+.+.... +.. +.|++.. +.. ++..... .....+|+....+ ......|.
T Consensus 8 ~~~~v~~G~~vtL~C~~s~~~~~-~~~----~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~ 82 (120)
T 3iy0_H 8 GTELVAPGGGVKLSCGASGYTFT-NYD----MNWVRQRPGAGLEWIGWIFPGDGSARGNEKFGGAAALAAAAAGGTAYMG 82 (120)
T ss_dssp CCEEECSSCCEEEEEEEESSCGG-GSC----EEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred CCEEecCCCCEEEEEEeECCCcc-CCe----EEEEEECCCCCCEEEEEEeCCCCceecChhhcCcEEEEEecCCCEEEEE
Confidence 35889999999999999753211 111 8999863 221 2111100 0112356655543 23455566
Q ss_pred EccceecCCEEEEEEc
Q psy5838 94 IKNVQESDRGWYMCQV 109 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~ 109 (215)
|.+++.+|+|.|.|.+
T Consensus 83 I~~~~~~Dsg~Y~C~~ 98 (120)
T 3iy0_H 83 LGGLSSEDSGVYFCAR 98 (120)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ECCCChHHCEEEEEEE
Confidence 6666666666666544
No 463
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=98.78 E-value=3e-08 Score=65.02 Aligned_cols=83 Identities=16% Similarity=0.312 Sum_probs=46.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeeece------eeeCCceEEEEcC-CceEEE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHHNV------ITQNPRISLTYND-HRSWFL 92 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~~~------~~~~~~~~~~~~~-~~~~~l 92 (215)
+..+.+.+|++|+|.|.+.+... .+.. +.|++.. +.. ++...... ....+|+....+. .....|
T Consensus 5 ~~~~~v~~G~~vtL~C~~s~~~~-~~~~----v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL 79 (115)
T 3k74_B 5 SGGGLVQPGGSLRLSCAASGFTF-NNYW----MYWVRRAPGKGLEWVSMINPGGIITKYAESVKGRFTISRDNAKNTLYL 79 (115)
T ss_dssp ECCCEECTTCCEEEEEEECSSCG-GGSC----EEEEEECTTCCEEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred CCCeEECCCCcEEEEEEEeCccc-cCCE----EEEEEECCCCCeEEEEEEECCCCceeecccccccEEEEEcCCCCEEEE
Confidence 34678899999999999975321 1111 8999863 221 22211110 1123566655432 245566
Q ss_pred EEccceecCCEEEEEEccC
Q psy5838 93 NIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 93 ~i~~~~~~d~G~Y~C~~~~ 111 (215)
.|.+++.+|+|.|.|.+..
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (115)
T 3k74_B 80 QMNSLTSEDTAVYYCAKDW 98 (115)
T ss_dssp EECSCCGGGCEEEEEEEST
T ss_pred EECCCChHhCEEEEEEEEc
Confidence 6666666666666665543
No 464
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=98.78 E-value=2.6e-08 Score=65.43 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=24.4
Q ss_pred EEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCe
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPS 163 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~ 163 (215)
.|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.
T Consensus 66 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104 (118)
T ss_dssp EEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred EEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEccCCC
Confidence 4667778888888888888653 3444445555555543
No 465
>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.78 E-value=3.8e-08 Score=66.51 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=46.0
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c---cEEEeeec----e--eeeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q---TILSIHHN----V--ITQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~---~~~~~~~~----~--~~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.. ... +.|+++.. . .++..... . ....+|+....+ ......
T Consensus 8 ~~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~s 80 (136)
T 1zvy_A 8 GGGSVQAGGSLRLSCAASGSTDSIEY-------MTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAY 80 (136)
T ss_dssp CCEECCTTCCEEEEEEEESCSTTCCE-------EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEE
T ss_pred CCEEEeCCCCEEEEEEecCCCCCCcE-------EEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEcCCCCEEE
Confidence 467888999999999997532 222 99999742 1 12222110 0 012356665543 234556
Q ss_pred EEEccceecCCEEEEEEccC
Q psy5838 92 LNIKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~~~ 111 (215)
|.|.+++.+|+|.|.|.+..
T Consensus 81 L~I~~~~~~Dsg~Y~C~~~~ 100 (136)
T 1zvy_A 81 LRMDSVKSEDTAIYTCGATR 100 (136)
T ss_dssp EEECSCCGGGCEEEEEEECS
T ss_pred EEECCCChhHCEEEEEEEEe
Confidence 66666666666666665443
No 466
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=71.25 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=25.3
Q ss_pred cCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecCC
Q psy5838 21 AEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 21 ~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~~ 63 (215)
..+..++.+.+|++|+|.|..... .... +.|+++..
T Consensus 8 ~g~~~pv~~~~G~~VtL~c~~~~~~~~~~-------i~W~~~~~ 44 (121)
T 2edo_A 8 QGHLVHMTVVSGSNVTLNISESLPENYKQ-------LTWFYTFD 44 (121)
T ss_dssp SSCCBCCEEETTSCEEECCSSCCCSSEEE-------EEEEEETT
T ss_pred cCCcEEEEEEeCCCEEEeCCCCCCCceeE-------EEEEcCCC
Confidence 334556889999999999987422 2222 89999654
No 467
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=98.77 E-value=3.7e-09 Score=75.12 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..|.+...+....+.+|+++.|.|.+.+.+.+. +.|++++
T Consensus 99 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-------v~W~~~~ 138 (191)
T 1epf_A 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT-------IIWKHKG 138 (191)
T ss_dssp CCSEEEECCSSEECCTTSCEEECCEEECSSCCE-------EEEEETT
T ss_pred cCceEecCCCcEeecCCCeEEEEEEECCCCCCE-------EEEEECC
Confidence 356777777788899999999999999888887 9999953
No 468
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=98.77 E-value=6.9e-08 Score=70.03 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=25.8
Q ss_pred EEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEEcCCeE
Q psy5838 126 FLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVVVPPSI 164 (215)
Q Consensus 126 ~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~ 164 (215)
.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+
T Consensus 172 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred EEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 4778888888888888888653 44456667777766654
No 469
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=98.77 E-value=2.9e-08 Score=71.49 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=58.0
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEe-eccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVV-DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~-~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
.+.+...+....+..|+.+.|.|.+ .+.+.+. +.|++ ++..+. ....++... .
T Consensus 111 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-------v~W~~-~~~~l~-------~~~~~~~~~-~---------- 164 (212)
T 2v9r_A 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT-------ISWKK-DGSPLD-------DKDERITIR-G---------- 164 (212)
T ss_dssp CSSCSBCCCCEEEETTSCEEEECBCCCEESCCE-------EEEEE-TTEEEC-------TTSTTEEEE-T----------
T ss_pred cccceeCCCceEecCCCcEEEEEecCCCCCCCE-------EEEEE-CCccCC-------CCcceEEcc-C----------
Confidence 3445556678889999999999998 7777776 99999 444321 111122111 1
Q ss_pred cceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeecCC-Cc-ceeeEEEEEcCCeEEe
Q psy5838 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP-MR-SRQGYLQVVVPPSIID 166 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~l~v~~~p~~~~ 166 (215)
..|.|.+++.+|+|.|+|.+.+.. .. +..+.|.|..+|.+..
T Consensus 165 -----------------------------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~ 208 (212)
T 2v9r_A 165 -----------------------------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVK 208 (212)
T ss_dssp -----------------------------TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred -----------------------------CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhh
Confidence 136677777788888888886633 22 2346788888776653
No 470
>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A
Probab=98.77 E-value=7.6e-08 Score=66.01 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=24.1
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+..... . .+.|+++.
T Consensus 8 ~~~~v~~G~svtL~C~~s~~~~~~-~----~v~Wyrq~ 40 (148)
T 1jtp_A 8 GGGSVQAGGSLRLSCAASGYTIGP-Y----CMGWFRQA 40 (148)
T ss_dssp CCEEEETTCCEEEEEEEESCSSCC-S----EEEEEEEC
T ss_pred CCEEEecCCCEEEEEEEeCccCCC-C----EEEEEEEC
Confidence 468899999999999997532111 1 19999974
No 471
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=98.76 E-value=6.3e-08 Score=73.44 Aligned_cols=36 Identities=8% Similarity=0.258 Sum_probs=29.3
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
+.+...+..+.+.+|++++|.|.+.+.+ +. +.|+|+
T Consensus 163 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~-------v~W~k~ 198 (282)
T 1qok_A 163 NVLTQSPAIMSASPGEKVTITCSASSSV-SY-------MHWFQQ 198 (282)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCC-SC-------CEEEEE
T ss_pred eEEecCCCEEEEcCCCcEEEEEEecCCC-ce-------EEEEEE
Confidence 4455556678899999999999999877 65 999994
No 472
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=98.76 E-value=2e-08 Score=72.71 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=32.9
Q ss_pred CcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 18 p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++
T Consensus 111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~-------i~W~~~~ 148 (212)
T 2yd1_A 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPN-------IYWIKNQ 148 (212)
T ss_dssp CEEEECCCCEEEETTCCEEECCEEECSSCCE-------EEEEETT
T ss_pred CeeEeCCCceEeecCCeEEEEEEeccCCCCe-------EEEEECC
Confidence 6777777888899999999999999888877 9999953
No 473
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=98.76 E-value=3e-08 Score=66.21 Aligned_cols=80 Identities=15% Similarity=0.396 Sum_probs=42.0
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecCC-c-c--EEEeeec----ee--eeCCceEEEEc-CCceE
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVDT-Q-T--ILSIHHN----VI--TQNPRISLTYN-DHRSW 90 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~~-~-~--~~~~~~~----~~--~~~~~~~~~~~-~~~~~ 90 (215)
|..+.+.+|++|+|.|.+.+.. ... +.|+|+.. . + ++..... .. ...+|+.+..+ .....
T Consensus 7 p~~~~v~~G~~vtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 79 (127)
T 2x1q_A 7 SGGGLVQPGGSLRLSCAASGRTFSNYR-------MGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLL 79 (127)
T ss_dssp ECCEEECTTCCEEEEEC------CCSE-------EEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCcE-------EEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEE
Confidence 3468899999999999987532 233 99999642 1 1 2222110 00 11346655543 23445
Q ss_pred EEEEccceecCCEEEEEEcc
Q psy5838 91 FLNIKNVQESDRGWYMCQVN 110 (215)
Q Consensus 91 ~l~i~~~~~~d~G~Y~C~~~ 110 (215)
.|.|.+++.+|+|.|.|.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~ 99 (127)
T 2x1q_A 80 YLEMLSLEPEDTAVYYCAAS 99 (127)
T ss_dssp EEEECSCCGGGCEEEEEEEE
T ss_pred EEEEcCCCHHHCEEEEEEEE
Confidence 56666666666555555443
No 474
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.76 E-value=1.9e-08 Score=81.13 Aligned_cols=95 Identities=25% Similarity=0.351 Sum_probs=59.6
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEcc
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKN 96 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 96 (215)
.|.+...+....+.+|++++|.|.+. .+.+. +.|++.++..+.. . ....|+....+
T Consensus 341 ~P~i~~~~~~~~v~~G~~v~L~C~~~-~p~p~-------i~W~~~~~~~~~~-~----~~~~~~~~~~~----------- 396 (440)
T 3zyj_A 341 APVIVEPPADLNVTEGMAAELKCRAS-TSLTS-------VSWITPNGTVMTH-G----AYKVRIAVLSD----------- 396 (440)
T ss_dssp CCCEEECCCCEEECTTSCCEECCEES-STTSE-------EEEECTTSCEEES-S----SCCSSEEECTT-----------
T ss_pred CCcccccccceeeccCceEEEEeecC-CCCCc-------eEEEeCCCceeec-c----CCCceEEEccC-----------
Confidence 57787788899999999999999995 45565 9999965543211 0 01112222111
Q ss_pred ceecCCEEEEEEccCCCceEEEEccCCeEEEEEcccCCCCCeEEEEEeec-CCCcceeeEEEEEcCCe
Q psy5838 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPS 163 (215)
Q Consensus 97 ~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~p~ 163 (215)
..|.|.+++.+|+|.|+|.|.+ .+.....+.+.|..+|.
T Consensus 397 ----------------------------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~~~~ 436 (440)
T 3zyj_A 397 ----------------------------GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436 (440)
T ss_dssp ----------------------------CCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC----
T ss_pred ----------------------------CeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEecccc
Confidence 1266777888888888888865 34555566666665543
No 475
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*
Probab=98.75 E-value=2.6e-08 Score=66.45 Aligned_cols=81 Identities=21% Similarity=0.342 Sum_probs=42.2
Q ss_pred CceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC-Ccc---EEEeee-cee----eeCCceEEEEc-CCceEEEEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD-TQT---ILSIHH-NVI----TQNPRISLTYN-DHRSWFLNI 94 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~-~~~---~~~~~~-~~~----~~~~~~~~~~~-~~~~~~l~i 94 (215)
..+.+.+|++|+|.|.+.+.....+.. +.|++.. +.. ++.... ... ...+|+.+..+ ......|.|
T Consensus 8 ~~~~~~~G~~vtL~C~~s~~~~~~~~~----v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (127)
T 3cx5_J 8 GAGLVQPSQSLSLTCSVTGYSITSGYY----WNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKL 83 (127)
T ss_dssp ECSEECTTSCEEEEEEEESSCTTTSSE----EEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEE
T ss_pred CCEEEcCCCCEEEEEEEeCcccCCCcE----EEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEE
Confidence 356788999999999998543221121 9999863 221 222110 000 01245544433 223455555
Q ss_pred ccceecCCEEEEEEc
Q psy5838 95 KNVQESDRGWYMCQV 109 (215)
Q Consensus 95 ~~~~~~d~G~Y~C~~ 109 (215)
.+++.+|+|.|.|.+
T Consensus 84 ~~~~~~Dsg~Y~C~~ 98 (127)
T 3cx5_J 84 NSVTTEDTATYYCAR 98 (127)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred CCCCHHHCEEEEEEE
Confidence 555555555555543
No 476
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=98.75 E-value=1.4e-08 Score=73.10 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=52.7
Q ss_pred ceEEEEEccceecCCEEEEEEccC--------------------------------------------CCceEEEEccC-
Q psy5838 88 RSWFLNIKNVQESDRGWYMCQVNT--------------------------------------------NPRISLTYNDH- 122 (215)
Q Consensus 88 ~~~~l~i~~~~~~d~G~Y~C~~~~--------------------------------------------~~~~~~~~~~~- 122 (215)
.+++|.|.+++.+|+|.|.|.+.+ .|.+.+.|...
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~ 156 (218)
T 4frw_A 77 LDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEV 156 (218)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESS
T ss_pred CeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECC
Confidence 456899999999999999998651 45566777321
Q ss_pred ----------------CeEEEEEcccCCCCCeEEEEEeecC-CCcceeeEEEEE
Q psy5838 123 ----------------RSWFLNIKNVQESDRGWYMCQVNTD-PMRSRQGYLQVV 159 (215)
Q Consensus 123 ----------------~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 159 (215)
....|.|..++.+|+|.|+|.|.+. +.....+++.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 157 KGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp CCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred cccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 1245899999999999999999874 444445554443
No 477
>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}
Probab=98.75 E-value=2.5e-08 Score=66.58 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
..+.+.+|++|+|.|.+.+.. ... +.|+++.
T Consensus 8 ~~v~v~~G~~VtL~C~~s~~~~~~~~-------v~WyrQ~ 40 (127)
T 3k81_A 8 GGGLAQAGGSLRLSCVVSGITFASEA-------WGWYRRA 40 (127)
T ss_dssp CCCBCCBTCEEEEEEBCSCCCCSSSC-------EEEEEEC
T ss_pred CCEEEccCCCEEEEEEecCCCccCcE-------EEEEEEC
Confidence 367788999999999987532 222 8999964
No 478
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=98.74 E-value=3.4e-09 Score=64.83 Aligned_cols=59 Identities=20% Similarity=0.463 Sum_probs=38.3
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEccc-eecCC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNV-QESDR 102 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~ 102 (215)
|+...+..|++|+|.|.+.+.| . +.|+| ++..+. .. ..+.|.|.++ +.+|+
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P--~-------i~W~k-dg~~l~---------~~---------~~~~L~I~~v~~~~Ds 57 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDE--N-------LKWEK-NGQELP---------QK---------HDKHLVLQDFSEVEDS 57 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCS--S-------CEEEE-TTEECT---------TC---------CSSCCBCCSCCTTTTC
T ss_pred CceeEEEcCCeEEEEEECCCCC--c-------EEEEE-CCEECc---------CC---------CCCEEEECccCccCcC
Confidence 4556677899999999998876 3 88999 444321 00 1235666664 55666
Q ss_pred EEEEEEcc
Q psy5838 103 GWYMCQVN 110 (215)
Q Consensus 103 G~Y~C~~~ 110 (215)
|.|+|.|.
T Consensus 58 G~Y~C~A~ 65 (82)
T 3r08_E 58 GYYVCYTP 65 (82)
T ss_dssp SCEEEECS
T ss_pred EEEEEEEc
Confidence 66666554
No 479
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Probab=98.74 E-value=8e-08 Score=64.37 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=26.5
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+..++ .+.+.+|++|+|.|.+.......... +.|+++.
T Consensus 5 v~Q~~-~~~~~~G~~vtL~C~~s~~~~~~~~~----v~Wyrq~ 42 (130)
T 3osk_A 5 VAQPA-VVLASSRGIASFVCEYASPGKATEVR----VTVLRQA 42 (130)
T ss_dssp EECCS-EEECCTTSCEEEEEEECCCSSCCEEE----EEEEEEE
T ss_pred EEcCC-EEEEeCCCeEEEEEEecCCCCCceEE----EEEEEeC
Confidence 34445 78889999999999998653222222 8999863
No 480
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=98.73 E-value=8.1e-08 Score=72.65 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=64.6
Q ss_pred ecCCEEEEEEccCCCceEEEEccC-------------CeEEEEEcccCCCCCeEEEEEeecCC-C-cceeeEEEEEcC-C
Q psy5838 99 ESDRGWYMCQVNTNPRISLTYNDH-------------RSWFLNIKNVQESDRGWYMCQVNTDP-M-RSRQGYLQVVVP-P 162 (215)
Q Consensus 99 ~~d~G~Y~C~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~-~-~~~~~~l~v~~~-p 162 (215)
..+.-...|.+.+. +.|..... ....|.|.+++.+|+|.|+|.+.+.. . ......+.|.+. |
T Consensus 14 ~G~~v~L~C~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p 91 (289)
T 3mjg_X 14 VSSTFVLTCSGSAP--VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDP 91 (289)
T ss_dssp TTCCEEEEEEESSC--CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCT
T ss_pred CCCcEEEEEeccce--EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECC
Confidence 34555677887765 33333211 13679999999999999999997532 1 223344555443 2
Q ss_pred eEEecCCCcc---eeeecCCcEEEEEEecccCCCeEEEEeCC-Cccc
Q psy5838 163 SIIDKDTSTD---LVVREQANVTLNCKAQGYPEPYVMWRRED-GANL 205 (215)
Q Consensus 163 ~~~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~i~W~~~~-~~~~ 205 (215)
.......... ..+.+|+.+.|.|.+. .|.+.+.|++.+ +..+
T Consensus 92 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~ 137 (289)
T 3mjg_X 92 TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVAL 137 (289)
T ss_dssp TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCC
T ss_pred CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcc
Confidence 2221112222 5688999999999998 677889998843 3443
No 481
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=73.24 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=19.7
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|.+...+ ...+.+|++++|.|.+.+.+ +. +.|+|++
T Consensus 100 ~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~-------~~W~k~g 136 (196)
T 2d3v_A 100 KPTLSALP-SPVVTSGENVTLQCGSRLRF-DR-------FILTEEG 136 (196)
T ss_dssp CCEEEC------------CEEEEEESSCC-SE-------EEEEEC-
T ss_pred CCeEEccC-CccccCCCcEEEEEEcCCCC-CE-------EEEEccC
Confidence 45555443 35788999999999998876 55 9999954
No 482
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=98.72 E-value=7.8e-08 Score=64.98 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=23.0
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.+.+.+|++|+|.|.+.+.... .. .+.|+++.
T Consensus 13 ~~~v~~G~~vtL~C~~s~~~~~-~~----~v~Wyrq~ 44 (136)
T 3tpk_A 13 GGSVQPGGSLRLSCTASGYTFS-QE----FVIWFRQA 44 (136)
T ss_dssp CEEECTTCCEEEEEEEEESGGG-CC----EEEEEEEC
T ss_pred CEEEccCCCEEEEEEEcccccC-Cc----EEEEEEEC
Confidence 4789999999999999753211 11 18999863
No 483
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Probab=98.72 E-value=9e-08 Score=65.17 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=24.6
Q ss_pred CCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+.+..... . .+.||++.
T Consensus 7 ~~~~~v~~G~svtL~C~~s~~~~~~-~----~v~WyrQ~ 40 (143)
T 3r0m_A 7 SGGGLVQAGGSLRLSCTASGRISSS-Y----DMGWFRQA 40 (143)
T ss_dssp ECCEEEETTCCEEEEEEESSCCCTT-E----EEEEEEEC
T ss_pred CCcEEEccCCCEEEEEEeeCCCcCC-c----EEEEEEEC
Confidence 4578899999999999997542111 1 28999874
No 484
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=98.72 E-value=2.4e-08 Score=64.70 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCcc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~ 65 (215)
.+|.+...+.. .+.+|+.|+|.|.....+.... ....+.|+| ++..
T Consensus 7 ~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~--~~~~~~w~k-~g~~ 52 (108)
T 4hwn_A 7 PAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSA--ARLLFSFYK-DGRI 52 (108)
T ss_dssp CCCEEEEESCS-SCBTTCCEEEEEEC-----------CCEEEEEE-TTEE
T ss_pred CCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcC--cceEEEEEE-CCcC
Confidence 35666555443 4678999999999875433200 001278999 4443
No 485
>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1
Probab=98.72 E-value=4.8e-08 Score=66.14 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=45.2
Q ss_pred ceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC-cc---EEEeeece-----eeeCCceEEEEcC-CceEEEEEc
Q psy5838 26 NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT-QT---ILSIHHNV-----ITQNPRISLTYND-HRSWFLNIK 95 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~-~~---~~~~~~~~-----~~~~~~~~~~~~~-~~~~~l~i~ 95 (215)
.+.+.+|++|+|.|.+.+.... .. .+.|+++.. .. ++...... ....+|+....+. ....+|.|.
T Consensus 11 ~v~v~~G~sVtL~C~~s~~~~~-~~----~v~WyrQ~~g~~p~~L~~~~~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~ 85 (139)
T 3g9a_B 11 GGSVQAGGSLRLSCAASGDTFS-SY----SMAWFRQAPGKECELVSNILRDGTTTYAGSVKGRFTISRDDAKNTVYLQMV 85 (139)
T ss_dssp CEEECTTCCEEEEEEECSSCGG-GS----EEEEEEECTTSCEEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEecCCCEEEEEEEcCCccC-Cc----EEEEEEECCCCCcEEEEEEECCCCEEcCCccCCCEEEEECCCCCEEEEEEC
Confidence 5789999999999999753211 11 189998642 21 22211111 1123566665432 345566666
Q ss_pred cceecCCEEEEEEccC
Q psy5838 96 NVQESDRGWYMCQVNT 111 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~~ 111 (215)
+++.+|+|.|.|.+..
T Consensus 86 ~lq~~DSG~YyCav~~ 101 (139)
T 3g9a_B 86 NLKSEDTARYYCAADS 101 (139)
T ss_dssp SCCGGGCEEEC-CEES
T ss_pred CCCHHHCEEEEEEEEe
Confidence 6666666666665543
No 486
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.72 E-value=5.3e-08 Score=65.88 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
+..+.+.+|++|+|.|.+.+.. ..... .+.||++.
T Consensus 7 ~~~~~v~~G~~vtL~C~~s~~~~~~~~~~----~v~WyrQ~ 43 (137)
T 3eak_A 7 SGGGLVQPGGSLRLSCAASGGSEYSYSTF----SLGWFRQA 43 (137)
T ss_dssp ECCCEECTTCCEEEEEEEESCTTSCGGGS----EEEEEEEC
T ss_pred cCCEEECCCCCEEEEeEecCCccccccCc----EEEEEEEC
Confidence 3467889999999999997541 11111 18999874
No 487
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}
Probab=98.71 E-value=9.7e-08 Score=63.23 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=43.0
Q ss_pred CCceEEEeCCcEEEEEEeeccC--CccceeeeEEE--EEEecCC-cc---EEEeeec-e----eeeCCceEEEEc-CCce
Q psy5838 24 IPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQV--AWVRVDT-QT---ILSIHHN-V----ITQNPRISLTYN-DHRS 89 (215)
Q Consensus 24 ~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v--~W~~~~~-~~---~~~~~~~-~----~~~~~~~~~~~~-~~~~ 89 (215)
+..+.+.+|++|+|.|.+.+.. ... + .|++... .. ++..... . ....+|+....+ ....
T Consensus 7 ~~~~~v~~G~~vtL~C~~s~~~~~~~~-------~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~ 79 (122)
T 3nn8_A 7 SGPEDVKPGASVKISCKASGYSLSTSG-------MGVNWVKQSPGKGLEWLAHIYWDDDKRYNPSLKSRATLTVDKTSST 79 (122)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSTT-------CEEEEEEEETTEEEEEEEEEETTCCEEECGGGTTCEEEEEETTTTE
T ss_pred CCCeEEeCCCcEEEEEEEECCCccCce-------EEeEEEEeCCCCCcEEEEEEEcCCCeecCccccCCEEEEEeCCCCE
Confidence 3468899999999999997531 122 5 9998632 21 2111111 0 012355555443 2344
Q ss_pred EEEEEccceecCCEEEEEEc
Q psy5838 90 WFLNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 90 ~~l~i~~~~~~d~G~Y~C~~ 109 (215)
.+|.|.+++.+|+|.|.|.+
T Consensus 80 ~sL~I~~~~~~Dsg~Y~C~~ 99 (122)
T 3nn8_A 80 VYLELRSLTSEDSSVYYCAR 99 (122)
T ss_dssp EEEEECSCCGGGCEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEE
Confidence 55565555555555555544
No 488
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=98.71 E-value=1.1e-07 Score=70.13 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.1
Q ss_pred ccCCCCceEEEeCCcEEEEEEeeccCC--ccceeeeEEEEEEec
Q psy5838 20 FAEPIPNVTVTVGRDALLACVVDNLKG--FKGLRIGWQVAWVRV 61 (215)
Q Consensus 20 ~~~~~~~~~~~~G~~v~L~C~~~~~~~--~~~~~~~~~v~W~~~ 61 (215)
+...+....+.+|++++|.|.+.+.+. +. +.|+|+
T Consensus 122 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~-------v~W~k~ 158 (240)
T 1moe_A 122 QLQQSGAELVEPGASVKLSCTASGFNIKDTY-------MHWVKQ 158 (240)
T ss_dssp EEEECCCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEE
T ss_pred EEeCCCceEEeCCCcEEEEEEEcCccCCCCE-------EEEEEE
Confidence 334456778889999999999997653 34 999995
No 489
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}
Probab=98.71 E-value=9.7e-09 Score=66.94 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEe
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVR 60 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~ 60 (215)
.|..+.+.+|++|+|+|.+....... .+.|+.
T Consensus 5 ~p~~V~~~~G~sVtL~c~~~~~~~~~------~i~W~~ 36 (111)
T 2pkd_A 5 EIFTVNGILGESVTFPVNIQEPRQVK------IIAWTS 36 (111)
T ss_dssp CCEEEEEETTSCEEECCCCCTTCCEE------EEEEES
T ss_pred CceEEEEEeCCCEEEeCccCCCCeee------EEEEec
Confidence 35578899999999999986322211 288985
No 490
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=98.70 E-value=2.9e-08 Score=70.98 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~ 62 (215)
.|.+...+.. .+.+|++++|.|.+.+.+ +. +.|+|++
T Consensus 100 ~p~~~~~~~~-~v~~G~~v~L~C~~~~~~-~~-------~~w~k~g 136 (196)
T 3p2t_A 100 KPTLSALPSP-LVTSGKSVTLLCQSRSPM-DT-------FLLCKER 136 (196)
T ss_dssp CCEEEEESCS-EECTTCCEEEEEEEEEEE-EE-------EEEEETT
T ss_pred CCEEEeCCcc-eecCCCeEEEEEecCCCC-CE-------EEEEeCC
Confidence 3444444433 678999999999998753 33 8999954
No 491
>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H
Probab=98.70 E-value=1.2e-07 Score=65.31 Aligned_cols=78 Identities=17% Similarity=0.415 Sum_probs=43.8
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-Cc-c--EEEeeec----ee--eeCCceEEEEc-CCceEE
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQ-T--ILSIHHN----VI--TQNPRISLTYN-DHRSWF 91 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~-~--~~~~~~~----~~--~~~~~~~~~~~-~~~~~~ 91 (215)
..+.+.+|++|+|.|.+.+.. ... +.||++. +. + ++..... .. ...+|+....+ ......
T Consensus 8 ~~~~v~~G~svtL~C~~s~~~~~~~~-------v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~s 80 (153)
T 2vyr_E 8 GGGLVQPGGSLRLSCAASGFTFEEYA-------MLWVRQAPGKGLEWVSGINARGYTTYYADSVKGRFTISRDNSKNTLY 80 (153)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGCC-------EEEEEECTTSCCEEEEEECTTSCCEEECTTTTTTEEEEEETTTTEEE
T ss_pred CCEEEecCCCEEEEEEEeCCccCCCE-------EEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEE
Confidence 368899999999999997532 222 8999964 22 1 2222110 00 11346655543 224455
Q ss_pred EEEccceecCCEEEEEEc
Q psy5838 92 LNIKNVQESDRGWYMCQV 109 (215)
Q Consensus 92 l~i~~~~~~d~G~Y~C~~ 109 (215)
|.|.+++.+|+|.|.|.+
T Consensus 81 L~I~~l~~~Dsg~Y~C~~ 98 (153)
T 2vyr_E 81 LQMNSLRTEDTAVYYCAK 98 (153)
T ss_dssp EEECSCCGGGCEEEEEEE
T ss_pred EEECcCCHHHCEEEEEEE
Confidence 666665555555555543
No 492
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=98.69 E-value=7.3e-08 Score=71.41 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=24.1
Q ss_pred CceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 25 PNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
....+.+|++|+|.|.+.+.+ .+. +.|+|+.
T Consensus 135 ~~~~v~~G~~v~L~C~~~~~~~~~~~-------v~W~k~~ 167 (247)
T 1svz_A 135 GPELKKPGETVKISCKATNYAFTDYS-------MHWVKQA 167 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSC-------EEEEEEC
T ss_pred CceeecCCCcEEEEEEEcCcccCCcE-------EEEEEeC
Confidence 345688999999999998764 334 9999964
No 493
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=98.68 E-value=5.9e-08 Score=80.89 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=53.6
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCCccEEEeeeceeeeCCceEEEEcCCceEEEEEc
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 95 (215)
..|.|...+....+.+|+++.|.|.+.+.|.|. +.|++ ++..+ ....++.+...+ ...+|.|.
T Consensus 481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~-------v~W~k-~~~el--------~~s~~~~i~~~~-~~~~L~I~ 543 (573)
T 3uto_A 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV-------VTWHK-DDREL--------KQSVKYMKRYNG-NDYGLTIN 543 (573)
T ss_dssp GSCEEEECCCCEEECTTSCEEEEEEEECSSCCE-------EEEEE-TTEEC--------CSSSSEEEEEET-TEEEEEEC
T ss_pred cCCccccCCCCcEEeCCCcEEEEEEEEccCCCe-------EEEEE-CCEEc--------ccCCcEEEEEcC-CEEEEEEc
Confidence 468888888899999999999999999999998 99999 44433 334566665544 33445544
Q ss_pred cceecCCEEEEEEcc
Q psy5838 96 NVQESDRGWYMCQVN 110 (215)
Q Consensus 96 ~~~~~d~G~Y~C~~~ 110 (215)
++..+|+|.|+|.|.
T Consensus 544 ~~~~~D~G~Yt~~A~ 558 (573)
T 3uto_A 544 RVKGDDKGEYTVRAK 558 (573)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred CCCcccCcEEEEEEE
Confidence 444444444444433
No 494
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=74.08 Aligned_cols=39 Identities=13% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeecc-CCccceeeeEEEEEEecC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNL-KGFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~-~~~~~~~~~~~v~W~~~~ 62 (215)
.|.+...+..+.+.+|++|+|.|.+.+. +.+. +.|+|+.
T Consensus 136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~-------v~W~k~~ 175 (259)
T 3omz_A 136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY-------IFWYKRL 175 (259)
T ss_dssp -CEEECCCCCEEEETTCCEEECCEEECCCSSCE-------EEEEEEC
T ss_pred CeeeEEeCCEEEEcCCCCEEEEEECCCccCCce-------EEEeeeC
Confidence 4567777888999999999999998864 4454 9999954
No 495
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=98.68 E-value=8.3e-08 Score=71.04 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=44.8
Q ss_pred ceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC-CccEE---Eeeec-e----eeeCCceEEEEc-CCceEEEE
Q psy5838 26 NVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD-TQTIL---SIHHN-V----ITQNPRISLTYN-DHRSWFLN 93 (215)
Q Consensus 26 ~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~-~~~~~---~~~~~-~----~~~~~~~~~~~~-~~~~~~l~ 93 (215)
...+.+|++++|.|.+.+.+ .+. +.|+|+. +..+. ..... . .....|+.+..+ ....+.|.
T Consensus 131 ~~~v~~G~~v~L~C~~~g~~~~~~~-------v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~ 203 (242)
T 2znx_A 131 PSLVKPSQTLSLTCSVTGDSITSDY-------XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLD 203 (242)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSC-------EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEE
T ss_pred cceecCCCeEEEEEEEEccccCCcc-------eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEE
Confidence 45688999999999998754 244 9999963 22221 11000 0 001345555432 22345666
Q ss_pred EccceecCCEEEEEEccC
Q psy5838 94 IKNVQESDRGWYMCQVNT 111 (215)
Q Consensus 94 i~~~~~~d~G~Y~C~~~~ 111 (215)
|.+++.+|+|.|+|.+.+
T Consensus 204 I~~v~~~D~G~Y~C~a~~ 221 (242)
T 2znx_A 204 LNSVTTEDTATYYCANXD 221 (242)
T ss_dssp ECSCCGGGCEEEEEEETT
T ss_pred ECCCCcCcCEEEEEeccC
Confidence 666666666666666554
No 496
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=98.68 E-value=7.7e-08 Score=72.68 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=26.1
Q ss_pred CCCceEEEeCCcEEEEEEeeccC--CccceeeeEEEEEEecC
Q psy5838 23 PIPNVTVTVGRDALLACVVDNLK--GFKGLRIGWQVAWVRVD 62 (215)
Q Consensus 23 ~~~~~~~~~G~~v~L~C~~~~~~--~~~~~~~~~~v~W~~~~ 62 (215)
.+....+.+|++++|.|.+.+.+ .+. +.|+|+.
T Consensus 140 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~-------v~W~k~~ 174 (276)
T 3auv_A 140 ESGGGLVQPGGSLRLSCAASGFTISDYW-------IHWVRQA 174 (276)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSE-------EEEEEEC
T ss_pred CCCceEecCCCeEEEEEEecCccCCCCE-------EEEEEcC
Confidence 34577888999999999998754 344 9999964
No 497
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=98.68 E-value=6.2e-08 Score=69.02 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=34.1
Q ss_pred CCCcccCCCCceEEEeCCcEEEEEEeeccCCc-cceeeeEEEEEEecC
Q psy5838 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVD 62 (215)
Q Consensus 16 ~~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~-~~~~~~~~v~W~~~~ 62 (215)
..|.+...+....+.+|+++.|.|.+.+.+.+ . +.|++++
T Consensus 105 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~-------v~W~~~~ 145 (195)
T 2c5d_C 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVD-------LLWLQDA 145 (195)
T ss_dssp CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCE-------EEEEESS
T ss_pred cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCE-------EEEEECC
Confidence 35777777788899999999999999988877 7 9999954
No 498
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=98.67 E-value=7.4e-08 Score=70.09 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEec
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRV 61 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~ 61 (215)
.|.+...+....+..|+.+.|.|.+.+.+.+. +.|+++
T Consensus 118 ~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~-------v~W~~~ 155 (218)
T 3k0w_A 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH-------YQWFKN 155 (218)
T ss_dssp SCEEEECCCCEEECTTCCEEEECEEEBSSCCE-------EEEEET
T ss_pred CceEEECCCceeecCCCcEEEEEEecccCCCe-------EEEEEC
Confidence 36777778888999999999999999888777 999994
No 499
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=98.66 E-value=4e-08 Score=70.07 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCcccCCCCceEEEeCCcEEEEEEeeccCCccceeeeEEEEEEecCC
Q psy5838 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDT 63 (215)
Q Consensus 17 ~p~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~ 63 (215)
.|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++.
T Consensus 113 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-------v~W~~~~~ 152 (201)
T 3s97_C 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPD-------IRWRKVLE 152 (201)
T ss_dssp EEEEEEECCCEEEETTCCEEEEEEEEEESCCE-------EEEEETTB
T ss_pred CCceEecCCceEEecCCcEEEEEEccCCCCCc-------eEEEeCCC
Confidence 45566555688899999999999999888777 99999543
No 500
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0
Probab=98.66 E-value=2.7e-07 Score=63.39 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.2
Q ss_pred CceEEEeCCcEEEEEEeecc
Q psy5838 25 PNVTVTVGRDALLACVVDNL 44 (215)
Q Consensus 25 ~~~~~~~G~~v~L~C~~~~~ 44 (215)
..+.+.+|++|+|.|.+...
T Consensus 11 ~~~~v~~G~~vtL~C~~s~~ 30 (151)
T 3k3q_A 11 GGGTLQAGKSLRLSCAISGL 30 (151)
T ss_dssp CCEEEETTCCEEEEEEEESC
T ss_pred CCEEECCCCCEEEEEEEeCc
Confidence 35889999999999999864
Done!