RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5838
(215 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 123 bits (310), Expect = 1e-34
Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 50/186 (26%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
++VG C V + K ++W + + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKD-------ISWFSPNGEKLSP-------- 47
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
RIS+ +ND S L I N D
Sbjct: 48 ----------------------------------NQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM 196
G Y C V + + + V + ++ K+ T +E + + C P ++
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133
Query: 197 WRREDG 202
W+ +
Sbjct: 134 WKHKGR 139
Score = 41.0 bits (96), Expect = 1e-04
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 21/100 (21%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILS 68
V+ + I N T +G+ L C D G+ ++W +
Sbjct: 191 VNVPPTVQARQSIVNATANLGQSVTLVCDAD----------GFPEPTMSWTKDGEP---- 236
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
I + I + L I+NV ++D Y+C
Sbjct: 237 IENEEEDDEKHIFSDDSSE----LTIRNVDKNDEAEYVCI 272
Score = 39.1 bits (91), Expect = 5e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYP-EPYVMWRREDGANLS 206
LQV + PS + + C+ G + + W +G LS
Sbjct: 3 LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS 46
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 111 bits (280), Expect = 3e-32
Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 44/146 (30%)
Query: 18 PHFAEPIP-NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
P+ NVTV G A+L C VD + W Q L +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS-------LQWSNPAQQ-TLYFDDKKALR 57
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
+ RI L +++ +V SD G Y
Sbjct: 58 DNRIELVRASWHELSISVSDVSLSDEGQYT------------------------------ 87
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPP 162
C + T P+++ + YL V+ P
Sbjct: 88 -----CSLFTMPVKTSKAYLTVLGVP 108
Score = 36.0 bits (83), Expect = 0.002
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
V S + ++ V E L C+ + W L ++ L
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKAL 56
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 113 bits (285), Expect = 8e-32
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 35/181 (19%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
VT +G L + + + W + I +HH+VI ++
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 146
HR ++FL + S G Y+C++
Sbjct: 61 HR--------------------------------SANTFFLVVTAANISHDGNYLCRMKL 88
Query: 147 DPMR-SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANL 205
++Q +L VV P ++ S + + +T+ C +P P+V W +G
Sbjct: 89 GETEVTKQEHLSVVKPLTLS--VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 146
Query: 206 S 206
+
Sbjct: 147 A 147
Score = 35.8 bits (82), Expect = 0.005
Identities = 7/93 (7%), Positives = 17/93 (18%), Gaps = 19/93 (20%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
+ + C V+ + V W+ +
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVN----------AFPHPHVQWLMPEGVEPAPTA---- 150
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
N + D ++ + C
Sbjct: 151 -ANGGVMK-EKDGSLSVAVDLSLPKPWHLPVTC 181
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 109 bits (274), Expect = 2e-30
Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 44/183 (24%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
V G L C K + W + IL + +T+ P D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQ-------FHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 146
R + D ++ L IKN++ D Y+C+V
Sbjct: 58 SR----------------------------RSLWDQGNFPLIIKNLKIEDSDTYICEVED 89
Query: 147 DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+ + + + ++TL ++ P V R G N+
Sbjct: 90 QKEEVQLLVFGLTANSDTH---------LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 140
Query: 207 YNG 209
Sbjct: 141 GGK 143
Score = 33.4 bits (76), Expect = 0.029
Identities = 9/100 (9%), Positives = 21/100 (21%), Gaps = 34/100 (34%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVITQNPRIS 81
+ + G+ L V + I
Sbjct: 105 SDTHLLQGQSLTLTLESP----------PGSSPSVQCRSPRGKNI--------------- 139
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQV-NTNPRISLTYN 120
L++ ++ D G + C V ++ +
Sbjct: 140 -----QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 105 bits (262), Expect = 2e-29
Identities = 23/161 (14%), Positives = 41/161 (25%), Gaps = 43/161 (26%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
M +TV G+ L CV K + W+ TI +
Sbjct: 1 MGSLTNHTETITVEEGQTLTLKCVTSLRKNSS-------LQWLTPSGFTIFLNEY----- 48
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
V N + L ++ + + NV D
Sbjct: 49 -------------------------------PVLKNSKYQLLHHSANQLSITVPNVTLQD 77
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVRE 177
G Y C +D + +++ + V+ + E
Sbjct: 78 EGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLE 118
Score = 36.5 bits (84), Expect = 0.001
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
S+ + + + V E +TL C + W G + N L
Sbjct: 2 GSLTNH--TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVL 51
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 104 bits (261), Expect = 4e-28
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 35/191 (18%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
P V G + + C K + W D I +H + S
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVY--WEMEDKNIIQFVHGEEDLKVQHSSY 64
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYND--HRSWFLNIKNVQESDRGWY 140
R L + + L I +V+ D G Y
Sbjct: 65 -----------------------------RQRARLLKDQLSLGNAALQITDVKLQDAGVY 95
Query: 141 MCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
C ++ ++ ++V P + I+ +V + L C+A+GYP+ V+W
Sbjct: 96 RCMISYGGADYKRITVKVNAPYNKIN--QRILVVDPVTSEHELTCQAEGYPKAEVIWTSS 153
Query: 201 DGANLSYNGDT 211
D LS T
Sbjct: 154 DHQVLSGKTTT 164
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 97.9 bits (243), Expect = 3e-26
Identities = 24/147 (16%), Positives = 41/147 (27%), Gaps = 43/147 (29%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+ TV G +L C V + + + W Q L +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQVKDHEDS-------SLQWSNPAQQ-TLYFGEKRALR 89
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
+ RI L + ++I NV +D G Y
Sbjct: 90 DNRIQLVTSTPHELSISISNVALADEGEYT------------------------------ 119
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPS 163
C + T P+R+ + + V+ P
Sbjct: 120 -----CSIFTMPVRTAKSLVTVLGIPQ 141
Score = 30.5 bits (68), Expect = 0.21
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
++D V V L C+ + + + + W L +
Sbjct: 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKR 86
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 98.3 bits (244), Expect = 1e-24
Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 44/183 (24%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
V G L C K + W + IL + +T+ P D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQ-------FHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 56
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 146
R D ++ L IKN++ D Y+C+V
Sbjct: 57 SRRSLW----------------------------DQGNFPLIIKNLKIEDSDTYICEVED 88
Query: 147 DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+ + + + ++TL ++ P V R G N+
Sbjct: 89 QKEEVQLLVFGLTANSDT---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 139
Query: 207 YNG 209
Sbjct: 140 GGK 142
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 100 SDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV 158
++ + +V +P++ + L Q + G + ++ L V
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV 291
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198
+ L C+ G P +M
Sbjct: 292 MRATQ---------------LQKNLTCEVWGPTSPKLMLS 316
Score = 34.0 bits (77), Expect = 0.026
Identities = 24/205 (11%), Positives = 49/205 (23%), Gaps = 46/205 (22%)
Query: 2 VSYFPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVV--DNLKGFKGLRIGWQVAWV 59
V + V + ++ F + V G + + K + WQ
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220
Query: 60 RVDTQTIL------SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV---- 109
I + +TQ+P++ + L Q + G +
Sbjct: 221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280
Query: 110 ---------------------------NTNPRISLTYND-----HRSWFLNIKNVQESDR 137
T+P++ L+ S V +
Sbjct: 281 GKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEA 340
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPP 162
G + C ++ + V P
Sbjct: 341 GMWQCLLSDSG--QVLLESNIKVLP 363
Score = 32.5 bits (73), Expect = 0.090
Identities = 10/112 (8%), Positives = 25/112 (22%), Gaps = 28/112 (25%)
Query: 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSI 69
L+ + + G+ L +
Sbjct: 89 QKEEVQLLVFGLTANSDTHLLQGQSLTLTLESP---PGSSPSVQC--------------- 130
Query: 70 HHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTNPRISLTYN 120
++PR L++ ++ D G + C V ++ +
Sbjct: 131 ------RSPRGKNIQGGKT---LSVSQLELQDSGTWTCTVLQNQKKVEFKID 173
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 89.8 bits (222), Expect = 1e-21
Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 36/197 (18%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ ++ +G D +L C N + QV W + + ++ +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKIT---QVTWQKSTNGSKQNVAIYNPSMG 71
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
+ Y + R+ + + ++ D
Sbjct: 72 VSVLAPYRE---------------------------RVEFLRPSFTDGTIRLSRLELEDE 104
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQAN-----VTLNCK-AQGYP 191
G Y+C+ T P +R+ L + V + T V+R + + C A G P
Sbjct: 105 GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP 164
Query: 192 EPYVMWRREDGANLSYN 208
V W Y
Sbjct: 165 PSVVSWETRLKGEAEYQ 181
Score = 58.2 bits (140), Expect = 2e-10
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
+ +E+ + C V L V P + + ++ +V L C
Sbjct: 196 YRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE-GFDGNWYLQRMDVKLTC 254
Query: 186 KAQGYPEPY-VMWRREDG 202
KA P W +G
Sbjct: 255 KADANPPATEYHWTTLNG 272
Score = 35.5 bits (81), Expect = 0.008
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 13/86 (15%)
Query: 97 VQESDRGWYMCQVNTNP------------RISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+ C+ + NP + + S G Y+C+
Sbjct: 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 145 -NTDPMRSRQGYLQVVVPPSIIDKDT 169
N RS Q + + ++
Sbjct: 304 TNPIGTRSGQVEVNITEAAALEHHHH 329
Score = 30.9 bits (69), Expect = 0.25
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 22/92 (23%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
E D L C D + W ++ S+ V QN +
Sbjct: 237 EGFDGNWYLQRMDVKLTCKAD------ANPPATEYHWTTLNG----SLPKGVEAQNRTL- 285
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ S G Y+C+ TNP
Sbjct: 286 ----------FFKGPINYSLAGTYICEA-TNP 306
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 85.9 bits (212), Expect = 5e-21
Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 32/188 (17%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
P + G A L C + + W+ + ++
Sbjct: 5 TPEQRIEKAKGETAYLPCKF---TLSPEDQGPLDIEWLISPSDN---------QIVDQVI 52
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYND--HRSWFLNIKNVQESDRGW 139
+ Y+ D+ + + R+ T ND +N+ N+Q SD G
Sbjct: 53 ILYSG--------------DKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGT 98
Query: 140 YMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMW 197
Y C+V + +++ L V+V PS D + L C+ +G W
Sbjct: 99 YQCKVKKAPGVANKKFLLTVLVKPSGTRC--FVDGSEEIGNDFKLKCEPKEGSLPLQFEW 156
Query: 198 RREDGANL 205
++ +
Sbjct: 157 QKLSDSQT 164
Score = 38.9 bits (90), Expect = 5e-04
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 19/96 (19%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + + +G D L C G L Q W ++ + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKE--GSLPL----QFEWQKLSDSQTMPTPWLAEMTS 175
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
P +++KN G Y C V N
Sbjct: 176 P------------VISVKNASSEYSGTYSCTV-QNR 198
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 85.3 bits (211), Expect = 6e-21
Identities = 23/185 (12%), Positives = 44/185 (23%), Gaps = 57/185 (30%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + L C + + + +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTS-------------------------------SSH 32
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
+ W N + + + + + I + D
Sbjct: 33 TLMYSY------WTKNGVELTATRK------------------NASNMEYRINKPRAEDS 68
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
G Y C + ++V P I E + + CK+ GYP P MW
Sbjct: 69 GEYHCVYHFVSAPKANATIEVKAAPDITGH--KRSENKNEGQDAMMYCKSVGYPHPEWMW 126
Query: 198 RREDG 202
R+++
Sbjct: 127 RKKEN 131
Score = 44.5 bits (105), Expect = 5e-06
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 19/95 (20%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P + G+DA++ C G+ + W + + I +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSV----------GYPHPEWMWRKKENGVFEEISN--- 139
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQ 108
+ R + N LNI N+Q D G Y C
Sbjct: 140 -SSGRFFII-NKENYTELNIVNLQITEDPGEYECN 172
Score = 38.3 bits (89), Expect = 7e-04
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP--YVMWRREDGANLS 206
P I+ ++ VTL C Y W + +G L+
Sbjct: 2 NEPRIVTS--EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELT 47
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 84.9 bits (210), Expect = 8e-21
Identities = 25/187 (13%), Positives = 46/187 (24%), Gaps = 52/187 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
++VG C V G ++W + + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVA------GDAKDKDISWFSPNGEKLSP--------- 47
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
RIS+ +ND S L I N D
Sbjct: 48 ---------------------------------NQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 138 GWYMCQVNTDPMR--SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
G Y C V + +++ + T +E + + C P +
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 196 MWRREDG 202
+W+ +
Sbjct: 133 IWKHKGR 139
Score = 45.6 bits (108), Expect = 2e-06
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 24/94 (25%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
F G DA++ C V + W IL
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVV----------SSLPPTIIWKHKGRDVILK------ 144
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
++ R + N++ L I+ ++++D G Y C+
Sbjct: 145 -KDVRFIVLSNNY----LQIRGIKKTDEGTYRCE 173
Score = 38.7 bits (90), Expect = 5e-04
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYP-EPYVMWRREDGANLSYNGD 210
LQV + PS + + C+ G + + W +G LS N
Sbjct: 3 LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ 50
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 85.9 bits (212), Expect = 9e-20
Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 87/267 (32%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
+ +P + + + G + + C + K + W R ++QT L +
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTI------KDVSSSVYSTWKRENSQTKLQEKY 259
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC---------------QVNTNPRIS 116
N +N R L I + + +D G +MC +V I+
Sbjct: 260 NSWHHG-----DFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314
Query: 117 LTYNDHR-------------------------SWF------------------------- 126
+ + W
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 127 --LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183
L++ ++ ++ G Y V N+D + + V P I+ D N L
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLV--------NGML 426
Query: 184 NCKAQGYPEPYVMWRREDGANLSYNGD 210
C A G+PEP + W G +
Sbjct: 427 QCVAAGFPEPTIDWYFCPGTEQRCSAS 453
Score = 58.5 bits (141), Expect = 2e-10
Identities = 34/256 (13%), Positives = 63/256 (24%), Gaps = 90/256 (35%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66
+P S E P ++ V VG + L C V W
Sbjct: 26 QPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP-----------GFVKWTF------ 68
Query: 67 LSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP---RISLTYNDHR 123
+ T + ++ + + ++ G Y C N + I + D
Sbjct: 69 -----------EILDETNENKQN-EWITEKAEATNTGKYTC-TNKHGLSNSIYVFVRDPA 115
Query: 124 SWF---------------------------------------------------LNIKNV 132
F + IK+V
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSV 175
Query: 133 QES-DRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKD----TSTDLVVREQANVTLNCKA 187
+ + R C V+ + + V P+ + ++RE T+ C
Sbjct: 176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI 235
Query: 188 QGYPEPY-VMWRREDG 202
+ W+RE+
Sbjct: 236 KDVSSSVYSTWKRENS 251
Score = 51.2 bits (122), Expect = 6e-08
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 120 NDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
N+++ + + ++ G Y C S Y+ V P + L +E
Sbjct: 75 NENKQNEWITEKAEATNTGKYTCTNKHG--LSNSIYVFVRDPAKLFL--VDRSLYGKEDN 130
Query: 180 NVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
+ + C + G L +
Sbjct: 131 DTLVRCPLTDPEVTNYSLKGCQGKPLPKDL 160
Score = 43.1 bits (101), Expect = 3e-05
Identities = 24/211 (11%), Positives = 40/211 (18%), Gaps = 78/211 (36%)
Query: 20 FAEPIPNVTVTVGRDALLACVVDNLKGF-KGLRIGWQVAWVRVDTQTILSIHHNVITQNP 78
F V V G + L + F K W +T +
Sbjct: 316 FPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQW-----IYMNRTFTDKWEDYPKSEN 367
Query: 79 RISLTYNDHRSWFLNIKNVQESDRGWYMC---------------QVNTNPRISLTYNDHR 123
++ Y L++ ++ ++ G Y VNT P I
Sbjct: 368 ESNIRYVSE----LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVN 423
Query: 124 ---------------SWF----------------------------------LNIKNVQE 134
W+ +I +
Sbjct: 424 GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAF 483
Query: 135 SDRGWYMCQV-NTDPMRSRQGYLQVVVPPSI 164
G C+ N S
Sbjct: 484 KHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Score = 31.2 bits (70), Expect = 0.27
Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+T + +L CV GF I W + Q + V Q S
Sbjct: 416 LTYDRLVNGMLQCVA---AGFPEPTIDWY--FCPGTEQRCSASVLPVDVQTLNSSGPPFG 470
Query: 87 HRSWFLNIKNVQESDRGWYMCQ---------------VNTNPRISLTYNDH 122
+I + G C+ N + + + H
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHH 521
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 85.5 bits (211), Expect = 1e-19
Identities = 30/255 (11%), Positives = 68/255 (26%), Gaps = 74/255 (29%)
Query: 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSI 69
+ L +P + + VG + C + G+ + W + +
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKA------VHVNHGFGLTWELENKA----L 269
Query: 70 HHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC------------QVNTNPRISL 117
+ S R F + +V +D G+Y C + I+
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329
Query: 118 TYNDHR-----------------------SWF------------------LNIKNVQESD 136
T + +W ++ +
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ 389
Query: 137 RGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
G Y+ N D ++ L + P ++ + ++ +C + GYP P
Sbjct: 390 PGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASA----------SQASCFSDGYPLPSW 439
Query: 196 MWRREDGANLSYNGD 210
W++ + + +
Sbjct: 440 TWKKCSDKSPNCTEE 454
Score = 62.0 bits (150), Expect = 1e-11
Identities = 26/203 (12%), Positives = 45/203 (22%), Gaps = 57/203 (28%)
Query: 1 MVSYFPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVR 60
MVS PE + V V V L +VD
Sbjct: 32 MVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDA----------------- 74
Query: 61 VDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYN 120
IS W ++
Sbjct: 75 ----------------PGNISCL------WVFKHSSLNCQPH--------------FDLQ 98
Query: 121 DHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
+ + I + E+ G Y+ + + + + + + + +
Sbjct: 99 NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR---PYFRKMEN 155
Query: 180 NVTLNCKAQGYPEPYVMWRREDG 202
L C ++ PEP V W D
Sbjct: 156 QDALVCISESVPEPIVEWVLCDS 178
Score = 46.2 bits (109), Expect = 3e-06
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 20/107 (18%)
Query: 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY 155
D C V N + + + Y +
Sbjct: 1 ETGNQDLPVIKC-VLINHKNN--------------DSSVGKSSSYPMVS--ESPEDLGCA 43
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
L+ ++ + + + V A++TL +W +
Sbjct: 44 LRPQSSGTVYE---AAAVEVDVSASITLQVLVDAPGNISCLWVFKHS 87
Score = 40.5 bits (94), Expect = 2e-04
Identities = 20/186 (10%), Positives = 38/186 (20%), Gaps = 60/186 (32%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ P +DAL+ + W V+ +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISE----SVPEPIVEW------------------VLCDS 178
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
S K + E C ++
Sbjct: 179 QGESCKEESPAVVKKEEKVLHELFGTDIRCCA------------------------RNEL 214
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYVM 196
G +R + + P T L ++ + + CKA +
Sbjct: 215 GRE---------CTRLFTIDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 197 WRREDG 202
W E+
Sbjct: 262 WELENK 267
Score = 27.4 bits (60), Expect = 4.5
Identities = 7/81 (8%), Positives = 17/81 (20%), Gaps = 6/81 (7%)
Query: 29 VTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHR 88
+ + +C D G+ W+ D + N + +
Sbjct: 419 LAEASASQASCFSD---GYPLPSWTWKKC---SDKSPNCTEEITEGVWNRKANRKVFGQW 472
Query: 89 SWFLNIKNVQESDRGWYMCQV 109
+ + C
Sbjct: 473 VSSSTLNMSEAIKGFLVKCCA 493
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 83.2 bits (205), Expect = 2e-19
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 34/181 (18%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V +G L C + + Q+ W R +++ H
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNM--EVTHVSQLTWARHGESGSMAVFHQT----------- 54
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+ ES R ++ + R+ L + ++ D G Y C
Sbjct: 55 --------QGPSYSESKRLEFVAAR--------LGAELRNASLRMFGLRVEDEGNYTCLF 98
Query: 145 NTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMWRRED 201
T P RS +L+V+ P + + + C + G P + W +
Sbjct: 99 VTFPQGSRSVDIWLRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156
Query: 202 G 202
G
Sbjct: 157 G 157
Score = 54.3 bits (130), Expect = 4e-09
Identities = 32/210 (15%), Positives = 52/210 (24%), Gaps = 57/210 (27%)
Query: 1 MVSYFPEPVSSVSESLM----PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW-- 54
+ FP+ SV L P + V +T + CV G
Sbjct: 97 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTG---------GRPP 147
Query: 55 -QVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
Q+ W D + + + +++T + + D C+V +
Sbjct: 148 AQITWHS-DLGGMPNTSQVPGFLSGTVTVTSL------WILVPSSQVDGKNVTCKV-EHE 199
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDL 173
S + L V P + +
Sbjct: 200 --SFEKPQLLTVNLT------------------------------VYYPPEVSISGYDNN 227
Query: 174 VVREQANVTLNCKAQGYPEPY-VMWRREDG 202
Q TL C A+ PEP W G
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMG 257
Score = 31.6 bits (71), Expect = 0.14
Identities = 13/97 (13%), Positives = 20/97 (20%), Gaps = 23/97 (23%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
N +A L C W + + Q
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDAR------SNPEPTGYNWSTTMGP----LPPFAVAQ 266
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ L I+ V + +C V TN
Sbjct: 267 GAQ------------LLIRPVDKPINTTLICNV-TNA 290
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 80.9 bits (199), Expect = 5e-19
Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 33/185 (17%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
P + VG DA L C + + + + W + +++++ + R S
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWV----SSSLRQVVNVYADGKEVEDRQSA 65
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
Y S + L I NV SD G Y+C
Sbjct: 66 PYRGRTSILRD-------------------------GITAGKAALRIHNVTASDSGKYLC 100
Query: 143 QVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRRED 201
V + + + D D+ + + L C++ G YP+P + W
Sbjct: 101 YFQDG---DFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK 157
Query: 202 GANLS 206
G N+
Sbjct: 158 GENIP 162
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 79.2 bits (195), Expect = 1e-18
Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 48/193 (24%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNVI 74
F N+T G L C + G +V W+R D Q +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQ--------GEPPEVHWLR-DGQILELADSTQT 52
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ L I ++Q SD G Y C V +
Sbjct: 53 QVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV--------------------FLGHQ 92
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
+ S+ GY+ + P +++ D V L+C+AQG PEP
Sbjct: 93 T-------------FVSQPGYVGLEGLPYFLEE--PEDRTVAANTPFNLSCQAQGPPEPV 137
Query: 195 -VMWRREDGANLS 206
++W + D L+
Sbjct: 138 DLLWLQ-DAVPLA 149
Score = 33.0 bits (75), Expect = 0.040
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGANLSYNGDTEL 213
+ ++ TL C+ Q P V W R DG L T+
Sbjct: 2 ESPFVG--NPGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQT 52
Score = 27.6 bits (61), Expect = 3.0
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 23/92 (25%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+P+F E + TV L+C G + W++
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQ------GPPEPVDLLWLQDAVP------------ 147
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
L ++ + + C+
Sbjct: 148 -----LATAPGHGPQRSLHVPGLNKTSSFSCE 174
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 78.0 bits (192), Expect = 4e-18
Identities = 41/190 (21%), Positives = 62/190 (32%), Gaps = 41/190 (21%)
Query: 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN 72
S L P E P V V G+ +L C W+ + +
Sbjct: 4 SGYLDPFPPEERPEVRVKEGKGMVLLCDPP-----YHFPDDLSYRWLL-NEFPVF----- 52
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNV 132
IT + R ++ + L I NV+ SD+G Y C V ++P I+ +
Sbjct: 53 -ITMDKRRFVSQTNGN---LYIANVEASDKGNYSCFV-SSPSITKS-------------- 93
Query: 133 QESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPE 192
P+ P I+ + D+ NVTL C A G P
Sbjct: 94 ---------VFSKFIPLIPIPERTTKPYPADIVVQ--FKDVYALMGQNVTLECFALGNPV 142
Query: 193 PYVMWRREDG 202
P + WR+
Sbjct: 143 PDIRWRKVLE 152
Score = 42.6 bits (100), Expect = 2e-05
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 28/100 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
+V +G++ L C G + W +V +
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFAL----------GNPVPDIRWRKVLEP---------M 154
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPR 114
IS + L I N+Q D G Y C+ N R
Sbjct: 155 PSTAEISTSGA-----VLKIFNIQLEDEGIYECEA-ENIR 188
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 78.4 bits (192), Expect = 6e-18
Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 28/197 (14%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
V V G L C + I W + + ++N
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNW--------- 58
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
+ + G ++ R S+ + L + +V D G Y C
Sbjct: 59 ---QGEGLGFVESDSYKESFGDFLG------RASVANLAAPT--LRLTHVHPQDGGRYWC 107
Query: 143 QVNTDPMRSRQG--------YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
QV +R+ G + P + + T+ + V E ++T+ C
Sbjct: 108 QVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN 167
Query: 195 VMWRREDGANLSYNGDT 211
V W +Y T
Sbjct: 168 VTWYTGPTFFENYETGT 184
Score = 49.1 bits (116), Expect = 2e-07
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 12/100 (12%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDN--------LKGFKGLRIGWQVAWVRVDTQTILSI 69
V V G D + C + G + + + I
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 70 HHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
R S + + L I+ + +D G C++
Sbjct: 197 TWFSSEIAGRASFSGARN----LVIRAAKITDAGRVWCEL 232
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 75.9 bits (186), Expect = 3e-17
Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 34/181 (18%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V +G L C + Q+ W R +++ H TQ P S +
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVS--QLTWARHGESGSMAVFHQ--TQGPSYSESK 62
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+ + R L + ++ D G Y C
Sbjct: 63 RLEF-------------------------VAARLGAELRDASLRMFGLRVEDEGSYTCLF 97
Query: 145 NTDPMRSRQGY--LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRRED 201
T P SR L+V+ P + + + C + G P + W +
Sbjct: 98 VTFPQGSRSVDIWLRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 155
Query: 202 G 202
G
Sbjct: 156 G 156
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 78.3 bits (193), Expect = 4e-17
Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 60/257 (23%)
Query: 8 PVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
++ + P F +V + +G C V G + ++ W + + +
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV---TGTAPI----KITWAKDNREIRP 240
Query: 68 SIHHNVITQNPRISL-----------TY---------NDHRSWFLNIK------------ 95
++ + +L Y D S L ++
Sbjct: 241 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPS 300
Query: 96 -NVQESDRGWYMCQVNTNPRISLT----------------YNDHRSWFLNIKNVQESDRG 138
V++ + Y C++ +P I + L + N+ D G
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 139 WYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
Y C+ N S L+V PP K + + A+V L C+ QG P V W
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGTPPFQVSW 418
Query: 198 RREDGANLSYNGDTELL 214
+ D L +++
Sbjct: 419 HK-DKRELRSGKKYKIM 434
Score = 74.1 bits (182), Expect = 1e-15
Identities = 27/189 (14%), Positives = 50/189 (26%), Gaps = 58/189 (30%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P FA + +V T+G C + +
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRI---------------------------------NGS 128
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
+ ++ W+ + + +++ T H L I +S
Sbjct: 129 EPLQVS------WYKDGELLKDDAN-------------LQTSFIHNVATLQILQTDQSHV 169
Query: 138 GWYMCQV-NTDPMRSRQGYLQVV---VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193
G Y C N S L + VPP K + + + T C G
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK--PVSVDLALGESGTFKCHVTGTAPI 227
Query: 194 YVMWRREDG 202
+ W +++
Sbjct: 228 KITWAKDNR 236
Score = 72.9 bits (179), Expect = 2e-15
Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 55/186 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F + V G D L C + +G
Sbjct: 385 PVFRKKPHPVETLKGADVHLECEL------QG---------------------------T 411
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P ++ W + + ++ + + + + ++I NV +D
Sbjct: 412 PPFQVS------WHKDKRELRSGKK------------YKIMSENFLT-SIHILNVDSADI 452
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM 196
G Y C+ N + G + + PP + K +D+ V L +G V
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAPPRFVKK--LSDISTVVGEEVQLQATIEGAEPISVA 510
Query: 197 WRREDG 202
W ++ G
Sbjct: 511 WFKDKG 516
Score = 64.4 bits (157), Expect = 2e-12
Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 59/200 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P+F EP+ +V +G L C V G
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKV------DG---------------------------T 32
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P I + W+ ++ + ++ N L I V SD
Sbjct: 33 PEIRIA------WYKEHTKLRSAPA----------YKMQFKNNVAS---LVINKVDHSDV 73
Query: 138 GWYMCQV-NTDPMRSRQGYLQV---VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193
G Y C+ N+ + L + +PPS K D+ V C+ G
Sbjct: 74 GEYTCKAENSVGAVASSAVLVIKERKLPPSFARK--LKDVHETLGFPVAFECRINGSEPL 131
Query: 194 YVMWRREDGANLSYNGDTEL 213
V W + DG L + + +
Sbjct: 132 QVSWYK-DGELLKDDANLQT 150
Score = 49.4 bits (118), Expect = 3e-07
Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F + + +++ VG + L + +G + + + W D I + ++
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATI---EGAEPISVAW-----FKDKGEI-------VRES 522
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
I ++Y+++ + L + ++ G Y CQ+
Sbjct: 523 DNIWISYSENIA-TLQFSRAEPANAGKYTCQIKN 555
Score = 46.0 bits (109), Expect = 4e-06
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
PP I+ + +TL CK G PE + W + + L ++
Sbjct: 5 PPYFIEP--LEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKM 54
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 74.4 bits (183), Expect = 7e-17
Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 56/200 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+TV+ G+ L C V+ G
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVE----------G-----------------------M 29
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
+ W + VQ D+ H FL++K+V+ SD
Sbjct: 30 EEPDIQ------WVKDGAVVQNLDQ-----------LYIPVSEQHWIGFLSLKSVERSDA 72
Query: 138 GWYMCQV--NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY- 194
G Y CQV + S+ +L V P + DL V A L+C+A G PEP
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 195 VMWRREDGANLSYNGDTELL 214
++W R + + +
Sbjct: 131 IVWWR-GTTKIGGPAPSPSV 149
Score = 44.4 bits (105), Expect = 5e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
++ L V + V LNC +G EP + W + DGA + +
Sbjct: 2 GLKLMGA--PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPV 53
Score = 34.0 bits (78), Expect = 0.017
Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 25/92 (27%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+P F ++ V L+C G + W R T+
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEA------VGPPEPVTIVWWRGTTK------------ 139
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
+ + + + C+
Sbjct: 140 -----IGGPAPSP--SVLNVTGVTQSTMFSCE 164
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 76.0 bits (187), Expect = 7e-17
Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 56/188 (29%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNVI 74
+ + V ++VG C G + W + I+S
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAI----------GEPESIDWYNPQGEKIIS------ 47
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
R+ + RS L I N D G Y CQ + +
Sbjct: 48 --TQRVVVQKEGVRS-RLTIYNANIEDAGIYRCQA--------------------TDAKG 84
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
+ L++ + + + ++ + + C+ P P
Sbjct: 85 QTQ-------------EATVVLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 195 VMWRREDG 202
V W +
Sbjct: 130 VSWLYHNE 137
Score = 73.3 bits (180), Expect = 9e-16
Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 57/196 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
F E + G DA + C V V+W+ + + +
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVS----------SSPAPAVSWLY-HNEEVTT------ 141
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ R ++ N++ L I N+ +SD G Y C+
Sbjct: 142 ISDNRFAMLANNN----LQILNINKSDEGIYRCEG-RVEARGEID--------------- 181
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
R + V VPP+I S + +T +C+A G PEP
Sbjct: 182 ----------------FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225
Query: 195 VMWRREDGANLSYNGD 210
+ W R +G + N
Sbjct: 226 ISWFR-NGKLIEENEK 240
Score = 48.7 bits (116), Expect = 3e-07
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 55/148 (37%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ N T G + +C G +
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRA------SG---------------------------S 221
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P +++ WF N K ++E+++ L ++ L ++N+ SD
Sbjct: 222 PEPAIS------WFRNGKLIEENEK------------YILKGSNTE---LTVRNIINSDG 260
Query: 138 GWYMCQ-VNTDPMRSRQGYLQVVVPPSI 164
G Y+C+ N +Q +LQV V
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQVFVQHHH 288
Score = 40.6 bits (95), Expect = 2e-04
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+ + + + + + C A G PE + W G + +
Sbjct: 2 MALLQVTIS--LSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQ 54
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 77.1 bits (189), Expect = 1e-16
Identities = 43/265 (16%), Positives = 74/265 (27%), Gaps = 68/265 (25%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
V + P + ++VG +L C + + I + + Q ++
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTA---RTELNVGIDFNWEYPSSKHQHKKLVNR 275
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ---------------VNTNPRIS 116
++ TQ+ + L I V SD+G Y C V+ P ++
Sbjct: 276 DLKTQSGSEMKKFLST----LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 331
Query: 117 LTYNDHR------------------------SWF-----------------LNIKNVQES 135
W+ L I V E
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSER 391
Query: 136 DRGWYMCQV-NT--DPMRSRQGYLQVVVPPSIIDKDTSTDL-VVREQANVTLNCKAQGYP 191
D G Y + N +S L V VPP I +K + + + TL C P
Sbjct: 392 DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451
Query: 192 EP-YVMWRREDGANLSYNGDTELLT 215
P ++ W + + +
Sbjct: 452 PPHHIHWYWQLEEECANEPSQAVSV 476
Score = 69.8 bits (170), Expect = 4e-14
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P++ T L C D + W ++ Q + + T
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTAD---RSTFE----NLTWYKLGPQPLPIHVGELPTPV 602
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
+ N W LN + + + + +KN D+
Sbjct: 603 CK-----NLDTLWKLNAT--------------------MFSNSTNDILIMELKNASLQDQ 637
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVV----PPSIIDKDTSTDLVVREQANVTLNCKAQGYPE 192
G Y+C + + Q+ V P+I + ++ ++C A G P
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGN--LENQTTSIGESIEVSCTASGNPP 695
Query: 193 PYVMWRRED 201
P +MW +++
Sbjct: 696 PQIMWFKDN 704
Score = 67.9 bits (165), Expect = 1e-13
Identities = 25/195 (12%), Positives = 44/195 (22%), Gaps = 25/195 (12%)
Query: 18 PHFAEPI---PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI 74
P E P + G L C V + + W + + +
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTV------YAIPPPHHIHWYWQLEEECANEPSQAV 474
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ F ++ + +
Sbjct: 475 SVTNPYPCEEWRSVEDFQGGNKIEVNKNQ------------FALIEGKNKTVSTLVIQAA 522
Query: 135 SDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193
+ Y C+ N R V P I D+ EQ +V+L C A
Sbjct: 523 NVSALYKCEAVNKVGRGERVISFHVTRGPEIT---LQPDMQPTEQESVSLWCTADRSTFE 579
Query: 194 YVMWRREDGANLSYN 208
+ W + L +
Sbjct: 580 NLTWYKLGPQPLPIH 594
Score = 59.8 bits (144), Expect = 1e-10
Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 21/136 (15%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
W R ++ + L I V +D G Y C TD
Sbjct: 60 DWLWPNNQSGSEQR----------VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 148 PMRSRQGYLQVVVPPSII---DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR----- 199
Y+Q P I D+ + + V + C + R
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 200 --EDGANLSYNGDTEL 213
DG +S++
Sbjct: 170 FVPDGNRISWDSKKGF 185
Score = 55.1 bits (132), Expect = 4e-09
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDK--DTSTDLVVREQANVTL 183
I + S G C+ D Y+ VVV I D S + + + L
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244
Query: 184 NCKAQGYPEPYVMWR 198
NC A+ + +
Sbjct: 245 NCTARTELNVGIDFN 259
Score = 47.1 bits (111), Expect = 2e-06
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
+V E + P + N T ++G ++C G +I W D +T
Sbjct: 660 TVLERVAPTITGNLENQTTSIGESIEVSCTAS---GNPPPQIMW-----FKDNET----- 706
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ ++ I L + L I+ V++ D G Y CQ +
Sbjct: 707 ---LVEDSGIVLKDGNRN---LTIRRVRKEDEGLYTCQA-CSV 742
Score = 35.5 bits (81), Expect = 0.012
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ 188
+++ ++C T + + P + + L ++ + + C+ Q
Sbjct: 1 MQSKVLLAVALWLCVE-TRAASVGLPSVSLD-LPRLSIQ--KDILTIKANTTLQITCRGQ 56
Query: 189 GYPEPYVMWRRED 201
+ +W
Sbjct: 57 --RDLDWLWPNNQ 67
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 75.5 bits (186), Expect = 1e-16
Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 55/194 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F +V + +G C V G
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHV---TG------------------------------T 32
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
I +T W + + ++ +++L N L + V + D
Sbjct: 33 APIKIT------WAKDNREIRPGGN----------YKMTLVENTAT---LTVLKVTKGDA 73
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM 196
G Y C N S L V PP I K + +V++ + CK G PE V+
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSR-IVKQDEHTRYECKIGGSPEIKVL 132
Query: 197 WRREDGANLSYNGD 210
W + D + +
Sbjct: 133 WYK-DETEIQESSK 145
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
P F + V G D L C + +G ++ W + +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECEL---QGTPPFQVSWH---------------KDKRELR 234
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + +++ ++I NV +D G Y C+ +N
Sbjct: 235 SGKKYKIM-SENFLTSIHILNVDSADIGEYQCKA-SND 270
Score = 45.9 bits (109), Expect = 3e-06
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+ PP K + + + T C G + W + D + G+ ++
Sbjct: 3 MAPPFFDLK--PVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKM 54
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 73.7 bits (181), Expect = 1e-16
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIID 166
+ N + L ++ L ++N+ SD G Y+C+ N +Q +LQV V P II
Sbjct: 44 LIEENEKYILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ 100
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ E VTL C A+G P P + W+R GD
Sbjct: 101 L---KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD 141
Score = 50.6 bits (121), Expect = 3e-08
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
PH + N T L C + G ++ W R +
Sbjct: 96 PHIIQL-KNETTYENGQVTLVCDAE----------GEPIPEITWKRAVDGFTFT--EGDK 142
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + RI + H S L+IK+V+ SD G Y C+ +
Sbjct: 143 SLDGRIEVK-GQHGSSSLHIKDVKLSDSGRYDCEA-ASR 179
Score = 47.1 bits (112), Expect = 5e-07
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
P+I S + +T +C+A G PEP + W R +G + N L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILK 54
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 75.1 bits (184), Expect = 2e-16
Identities = 30/225 (13%), Positives = 66/225 (29%), Gaps = 39/225 (17%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQ---------VAWVRVDTQTILS 68
P P + V + C +D L ++ V + S
Sbjct: 7 PQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63
Query: 69 IHHNV----------------ITQNPRISLTYNDHRSWFLNIKN--VQESDRGWYMCQVN 110
+ +Q ++T + + + V E C+ +
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH 123
Query: 111 TNPRISLTYNDHRSW----FLNIKNVQESDRGWYMCQV-----NTDPMRSRQGYLQVVVP 161
+++L + L +K E + + C +++ L+V+
Sbjct: 124 PRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG 183
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
P + ++D + E + T C+A G P P + ++ L
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Score = 31.9 bits (72), Expect = 0.12
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 107 CQVNTNPRISLTY---NDHRSWFLNIKNVQESDRGWYMCQ-VNTDPMRSRQGYLQVVVP 161
CQ NP L V G Y+C+ +T +R+ + V+ P
Sbjct: 207 CQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 75.9 bits (186), Expect = 2e-16
Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 49/188 (26%)
Query: 16 LMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
L +P + + VG + C
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKA-----VHV-------------------------- 254
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQES 135
N LT W L K ++E + R F + +V +
Sbjct: 255 -NHGFGLT------WELENKALEEGNYFEMSTYSTN-------RTMIRILFAFVSSVARN 300
Query: 136 DRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
D G+Y C S+ + +V I ++S D + + + + + YP+
Sbjct: 301 DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Query: 195 VMWRREDG 202
W
Sbjct: 358 CTWTFSRK 365
Score = 62.0 bits (150), Expect = 1e-11
Identities = 26/203 (12%), Positives = 45/203 (22%), Gaps = 57/203 (28%)
Query: 1 MVSYFPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVR 60
MVS PE + V V V L +VD
Sbjct: 32 MVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDA----------------- 74
Query: 61 VDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYN 120
IS W ++
Sbjct: 75 ----------------PGNISCL------WVFKHSSLNCQPH--------------FDLQ 98
Query: 121 DHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
+ + I + E+ G Y+ + + + + + + + +
Sbjct: 99 NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPY---FRKMEN 155
Query: 180 NVTLNCKAQGYPEPYVMWRREDG 202
L C ++ PEP V W D
Sbjct: 156 QDALVCISESVPEPIVEWVLCDS 178
Score = 50.1 bits (119), Expect = 1e-07
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 20/107 (18%)
Query: 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY 155
D C V N + + + Y +
Sbjct: 1 ETGNQDLPVIKC-VLINHKNN--------------DSSVGKSSSYPMVS--ESPEDLGCA 43
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
L+ ++ + + + V A++TL +W +
Sbjct: 44 LRPQSSGTVYE---AAAVEVDVSASITLQVLVDAPGNISCLWVFKHS 87
Score = 30.8 bits (69), Expect = 0.34
Identities = 6/101 (5%), Positives = 24/101 (23%), Gaps = 21/101 (20%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
++ E + + + + + + +R W ++
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFK---AYPQIRCTW-----TFSRKSFPCEQ 371
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ ++ S ++ + G Y+
Sbjct: 372 KGL-----------DNGYS--ISKFCNHKHQPGEYIFHAEN 399
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 75.6 bits (186), Expect = 2e-16
Identities = 32/197 (16%), Positives = 52/197 (26%), Gaps = 54/197 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
PH + N T L C + G ++ W R + +
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAE----------GEPIPEITWKRAVDGFTFTEGDKSL 50
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ + L+IK+V+ SD G Y C+
Sbjct: 51 DGRIEVKGQHGSSS---LHIKDVKLSDSGRYDCEAA------------------------ 83
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
+ + YL + P I T E + ++C + P
Sbjct: 84 ----------SRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPAS 131
Query: 195 VMWRREDGANLSYNGDT 211
+ WRR D L T
Sbjct: 132 IHWRR-DKLVLPAKNTT 147
Score = 42.1 bits (99), Expect = 6e-05
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 15/94 (15%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F G ++C V K I W R D + +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDV---KSNPPASIHW-----RRDKLVLPA------KNT 146
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ + L I ++D G Y C
Sbjct: 147 TNLKTYSTGRKMI-LEIAPTSDNDFGRYNCTATN 179
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 74.1 bits (181), Expect = 3e-16
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 38/192 (19%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+P P + V VG L+ CVV + R+ W + + D + +++
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS---N 61
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
+ + + + H L +++VQ++D
Sbjct: 62 LSVPTGRFQNRSHLVGDT--------------------------FHNDGSLLLQDVQKAD 95
Query: 137 RGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP-- 193
G Y C++ + + +++ V P + DL VR + C Q E
Sbjct: 96 EGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRV 150
Query: 194 -YVMWRREDGAN 204
V W G++
Sbjct: 151 TKVNWMFSSGSH 162
Score = 44.5 bits (104), Expect = 8e-06
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
++ V VG + C + + + R+ +V W+ + V++ + +
Sbjct: 126 RDLRVRVGDTTQMRCSI---QSTEEKRVT-KVNWMFSSGS--HTEEETVLSYDSNMRSGK 179
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQ 143
F N R+ LT + R+ + ++ V+ESD+G Y C
Sbjct: 180 FQSLGRFRN--------------------RVDLTGDISRNDGSIKLQTVKESDQGIYTCS 219
Query: 144 VNTDPMR-SRQGYLQVVVPPSII 165
+ + + L VV
Sbjct: 220 IYVGKLESRKTIVLHVVQDEFQR 242
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 72.1 bits (177), Expect = 4e-16
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 57/201 (28%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
M F E + G DA + C V
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRV---SSS----------------------------P 30
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
P +S W + + V + R ++ N++ L I N+ +SD
Sbjct: 31 APAVS--------WLYHNEEVTTIS----------DNRFAMLANNN----LQILNINKSD 68
Query: 137 RGWYMCQVN---TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193
G Y C+ + R + V VPP+I S + +T +C+A G PEP
Sbjct: 69 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 128
Query: 194 YVMWRREDGANLSYNGDTELL 214
+ W R +G + N L
Sbjct: 129 AISWFR-NGKLIEENEKYILK 148
Score = 46.3 bits (110), Expect = 1e-06
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 24/98 (24%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
+ N T G + +C G I W N +I
Sbjct: 99 ISMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWF---------------RNGKLIE 140
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+N + L ++ L ++N+ SD G Y+C+ TN
Sbjct: 141 ENEKYILKGSNTE---LTVRNIINSDGGPYVCRA-TNK 174
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 72.4 bits (178), Expect = 5e-16
Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 54/186 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + + +VT +G A L+C + G
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIV----------G-----------------------R 34
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P + W+ K + +S + ++ + L + ++ D
Sbjct: 35 PLPDIK------WYRFGKELIQS------------RKYKMSSDGRTH-TLTVMTEEQEDE 75
Query: 138 GWYMCQ-VNTDPMRSRQGYLQVVVPPSIIDKDTS-TDLVVREQANVTLNCKAQGYPEPYV 195
G Y C N L + P + + L+ G P P +
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 196 MWRRED 201
W
Sbjct: 136 TWFHGQ 141
Score = 42.0 bits (99), Expect = 3e-05
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
P I + D+ + L+C+ G P P + W R G L + ++
Sbjct: 7 APGIRKE--MKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMS 57
Score = 42.0 bits (99), Expect = 3e-05
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 18 PHFAEPIP---NVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHH 71
P F P VG L + IG + W +
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMY----------IGRPVPAMTWFH-GQK------- 142
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQVNTNP 113
++ + I++ +H + L +KNVQ ++ G Y Q+ +N
Sbjct: 143 -LLQNSENITIENTEHYT-HLVMKNVQRKTHAGKYKVQL-SNV 182
Score = 32.7 bits (75), Expect = 0.052
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQV-NTDPMRSRQGYLQVV 159
+ + I++ +H + L +KNVQ ++ G Y Q+ N +++
Sbjct: 143 LLQNSENITIENTEHYT-HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 71.7 bits (176), Expect = 7e-16
Identities = 40/199 (20%), Positives = 59/199 (29%), Gaps = 58/199 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P P+ V V A C V+
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVE----------S-----------------------Y 34
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P+ ++ W N ++ D R S+ N L I +V++SD
Sbjct: 35 PQPEIS------WTRNKILIKLFD-----------TRYSIRENGQ---LLTILSVEDSDD 74
Query: 138 GWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
G Y C N G LQV + P I ++ + E L C G P+P V
Sbjct: 75 GIYCCTANNGVGGAVESCGALQVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSV 132
Query: 196 MWRREDGANLSYNGDTELL 214
W + + L N +L
Sbjct: 133 SWIK-GDSALRENSRIAVL 150
Score = 45.5 bits (108), Expect = 2e-06
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 27/99 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P P NV + G A+L C G V+W++ D + +
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTM----------GNPKPSVSWIKGD---------SAL 141
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+N RI++ L I NVQ+ D G Y C N
Sbjct: 142 RENSRIAV-LESGS---LRIHNVQKEDAGQYRCVA-KNS 175
Score = 42.0 bits (99), Expect = 3e-05
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
++ P I + + T C + YP+P + W R + +
Sbjct: 3 KLPKAPVITTP--LETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDT 53
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 73.6 bits (181), Expect = 7e-16
Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 54/188 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
PHF E + N+ V +A L C V +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTG---------------------------------H 31
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P+ + W+ K + RI + L I +V + D
Sbjct: 32 PKPIVK------WYRQGKEIIADGL---------KYRIQEFKGGYHQ--LIIASVTDDDA 74
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSII---DKDTSTDLVVREQANVTLNCKAQGYPEP 193
Y + N S L+V VP I + + V++ G P+P
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 194 YVMWRRED 201
+ W++
Sbjct: 135 VITWQKGQ 142
Score = 45.1 bits (107), Expect = 5e-06
Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 20/97 (20%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VI 74
+P E + V G + G I W +I
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPF---SGKPDPVITW---------------QKGQDLI 145
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
N + + + V+ D G+Y+
Sbjct: 146 DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Score = 41.3 bits (97), Expect = 9e-05
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ P ++ +L VR Q+N TL CK G+P+P V W R+ ++
Sbjct: 3 MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK 51
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 74.1 bits (182), Expect = 7e-16
Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 44/198 (22%)
Query: 17 MPHF-AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
+ +F V+V G+ +L C L W + +
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGP--PPHSGELSYAW------------IFNEYPSYQ 146
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQES 135
N R + L I V++SD G Y C V TN +
Sbjct: 147 DNRRFVSQETGN----LYIAKVEKSDVGNYTCVV-TNTVTNHK----------------- 184
Query: 136 DRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
P+ R + P I + + + V L C A G P P +
Sbjct: 185 ------VLGPPTPLILRNDGVMGEYEPKIEVQ-FPETVPAEKGTTVKLECFALGNPVPTI 237
Query: 196 MWRREDGANLSYNGDTEL 213
+WRR DG ++
Sbjct: 238 LWRRADGKPIARKARRHK 255
Score = 67.9 bits (166), Expect = 1e-13
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
L I N Q+ D G Y C N+ +G L P+ + D+ V + +V C
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI--INDIHVAMEESVFWEC 317
Query: 186 KAQGYPEPYVMWRREDGANLSYNG 209
KA G P+P W + +G L
Sbjct: 318 KANGRPKPTYRWLK-NGDPLLTRD 340
Score = 49.1 bits (117), Expect = 3e-07
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 19/121 (15%)
Query: 107 CQVNTNPRISLT----------YNDHRSWFLN-----IKNVQESDRGWYMCQVNTD--PM 149
C+V NP+ + D R ++ + D G Y C +
Sbjct: 30 CEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTI 89
Query: 150 RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMWRREDGANLSYN 208
SR+ LQ + + ST + VR + L C E W + + N
Sbjct: 90 VSREAKLQFAYLENFKTRTRST-VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN 148
Query: 209 G 209
Sbjct: 149 R 149
Score = 42.1 bits (99), Expect = 5e-05
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 28/99 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P++ + I ++ V + C + G W++ +
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKAN----------GRPKPTYRWLKNGDP---------L 336
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
RI + LNI V SD G Y C N
Sbjct: 337 LTRDRIQIEQGT-----LNITIVNLSDAGMYQCVA-ENK 369
Score = 41.4 bits (97), Expect = 1e-04
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 161 PPSIID--KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
P + L E+ V L+C+ +G P+P++ W+ +G ++ D
Sbjct: 5 GPVFVQEPSHVMFPLDSEEK-KVKLSCEVKGNPKPHIRWKL-NGTDVDIGMD 54
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 71.7 bits (176), Expect = 8e-16
Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 56/188 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F +P+ +V V G A + G
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHI------SG---------------------------F 32
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P ++ WF + + + S P + ++++D R+ L I V +++
Sbjct: 33 PVPEVS------WFRDGQVISTSTL----------PGVQISFSDGRA-KLTIPAVTKANS 75
Query: 138 GWYMCQ-VNTDPMRSRQGYLQVV---VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP 193
G Y + N + L V PP+ + + + VR+ + V L + G P P
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQVRVTGIPTP 133
Query: 194 YVMWRRED 201
V + R+
Sbjct: 134 VVKFYRDG 141
Score = 48.6 bits (116), Expect = 2e-07
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 22/98 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
P+F + + ++TV G L V G + + + I
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVT---GIPTPVVKFY---------------RDGAEIQ 145
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ ++ L I D G Y TN
Sbjct: 146 SSLDFQISQEGDLY-SLLIAEAYPEDSGTYSVNA-TNS 181
Score = 41.2 bits (97), Expect = 7e-05
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
P+ +VV E + T G+P P V W R DG +S + +
Sbjct: 2 TTQAPTFTQP--LQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQ 55
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 72.5 bits (177), Expect = 8e-16
Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 36/182 (19%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
P V V G+ +L C + + W D + Q + +T
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHD------HYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+D R + + L + Q D Y+C V
Sbjct: 62 HDTRGRSPP---------------YQLDSQGRLV----------LAEAQVGDERDYVCVV 96
Query: 145 NTDPMRSRQGY--LQVVVPPS--IIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRR 199
+ + L V P + + T V+ + A C ++ G P P + W R
Sbjct: 97 RAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR 156
Query: 200 ED 201
Sbjct: 157 NG 158
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 73.8 bits (181), Expect = 1e-15
Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 52/198 (26%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + T+ G L CV G N
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVA------GG---------------------------N 456
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P ++ W L+ K + +DR +T N +LNI +V +D
Sbjct: 457 PTPEIS------WELDGKKIANNDR--------YQVGQYVTVNGDVVSYLNITSVHANDG 502
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM 196
G Y C + + L V P I + + + C GYP ++
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYGLPYIR---QMEKKAIVAGETLIVTCPVAGYPIDSIV 559
Query: 197 WRREDGANLSYNGDTELL 214
W R D L N ++
Sbjct: 560 WER-DNRALPINRKQKVF 576
Score = 71.9 bits (176), Expect = 7e-15
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 38/193 (19%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
V + ++ + V G A++ C++ + V+W + +
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD----FVEVVSWHTDEEENYFPGA 187
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESD-RGWYMCQVNTNPRISLTYNDHRSWFLNI 129
+ + + + L+I+ V D Y C+ + T L
Sbjct: 188 E----YDGKYLVLPSGE----LHIREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRL-- 236
Query: 130 KNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG 189
V T+P+ S P ++ + + L C AQG
Sbjct: 237 --------------VITEPISSA--------VPKVVSLAKFDMKTYSGSSTMALLCPAQG 274
Query: 190 YPEPYVMWRREDG 202
YP P W +
Sbjct: 275 YPVPVFRWYKFIE 287
Score = 71.1 bits (174), Expect = 1e-14
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ-VNTDPMRSRQGYLQVVVPPSIID 166
++ + I+ + R L I+ V+ S G + C N + L V VPP I
Sbjct: 660 AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWIL 719
Query: 167 KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
+ TD + ++ + CKA G+P+P V W++ G
Sbjct: 720 E--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753
Score = 69.2 bits (169), Expect = 5e-14
Identities = 45/258 (17%), Positives = 68/258 (26%), Gaps = 78/258 (30%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDT 63
EP+SS ++ T + L C G+ W +
Sbjct: 240 EPISSAVPKVVSL--AKFDMKTYSGSSTMALLCPAQ----------GYPVPVFRWYKFIE 287
Query: 64 QTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ--------------- 108
T + S L IK+ D G Y+C
Sbjct: 288 GTTRK--------QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339
Query: 109 VNTNPRISLTYNDHR---------------------SWF------------LNIKNVQES 135
V + SW L I++V++
Sbjct: 340 VTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKE 399
Query: 136 DRGWYMCQV-NTDPMRSRQGYLQVVV---PPSIIDKDTSTDLVVREQANVTLNCKAQGYP 191
D+G Y C V N L++ PP I + + +V L C A G P
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQA--FQEETMEPGPSVFLKCVAGGNP 457
Query: 192 EPYVMWRREDGANLSYNG 209
P + W DG ++ N
Sbjct: 458 TPEISWEL-DGKKIANND 474
Score = 67.7 bits (165), Expect = 2e-13
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 112 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTS 170
+ S L IK+ D G Y+C V N+ S + L V P S
Sbjct: 293 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--P 350
Query: 171 TDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
V C+ G P V W + DG + ++
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV 390
Score = 62.6 bits (152), Expect = 9e-12
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 127 LNIKNVQESDRGWYMCQV---NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183
+N+ N + + + P + + T+ + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNR-IDFSNSTGAEI 59
Query: 184 NCKAQGYPEPYVMWRREDG 202
CKA G P P ++W R DG
Sbjct: 60 ECKASGNPMPEIIWIRSDG 78
Score = 57.3 bits (138), Expect = 6e-10
Identities = 30/189 (15%), Positives = 51/189 (26%), Gaps = 60/189 (31%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
+ + + G ++ C V G+ I W + +
Sbjct: 527 LPYIRQMEKKAIVAGETLIVTCPV---AGYPIDSIVW---------------ERDNRALP 568
Query: 76 QNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
N + + N L I+NV+ SD+ Y C N
Sbjct: 569 INRKQKVFPNGT----LIIENVERNSDQATYTCVA-KNQ------------------EGY 605
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP- 193
S +QV+V P II + + +TL+C G P
Sbjct: 606 SA--------------RGSLEVQVMVLPRIIPFAFE-EGPAQVGQYLTLHCSVPGGDLPL 650
Query: 194 YVMWRREDG 202
+ W +
Sbjct: 651 NIDWTLDGQ 659
Score = 47.6 bits (113), Expect = 1e-06
Identities = 27/212 (12%), Positives = 50/212 (23%), Gaps = 61/212 (28%)
Query: 10 SSVSESLMPHF-AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQT 65
++ P F EP + + A + C G ++ W+R D
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKAS----------GNPMPEIIWIRSDGT- 79
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSW 125
+ P + +D + L + D
Sbjct: 80 -------AVGDVPGLRQISSDGK---LVFPPFRAEDY----------------------- 106
Query: 126 FLNIKNVQESDRGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183
QE Y C + SR +++ VV V + +
Sbjct: 107 ------RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE--HVIRGNSAVI 158
Query: 184 NCKA---QGYPEPYVMWRREDGANLSYNGDTE 212
C V W ++ N + +
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYD 190
Score = 42.2 bits (99), Expect = 7e-05
Identities = 17/149 (11%), Positives = 38/149 (25%), Gaps = 51/149 (34%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + + G DA + C
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKA---------------------------------DGF 741
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P+ +T W + + + + + I + L++ N+Q+++
Sbjct: 742 PKPQVT------WKKAVGDTPGEYK-----DLKKSDNIRVEEGT-----LHVDNIQKTNE 785
Query: 138 GWYMCQVNT--DPMRSRQGYLQVVVPPSI 164
G+Y+C+ S + V
Sbjct: 786 GYYLCEAINGIGSGLSAVIMISVQAHHHH 814
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 73.5 bits (180), Expect = 2e-15
Identities = 41/251 (16%), Positives = 67/251 (26%), Gaps = 68/251 (27%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS--IHHNVITQNPR 79
E P V G++ LL W + I+ I T P
Sbjct: 5 ESTP-FNVAEGKEVLLLVHN---LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYM--------------------------------- 106
S + + L I+N+ ++D G+Y
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 107 ------------CQVNTNPRISLTYNDHRSW-------------FLNIKNVQESDRGWYM 141
C+ T L + +++S L + NV +D Y
Sbjct: 121 KPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 142 CQVNTD--PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
C+ RS L V+ P + + R N+ L+C A P W
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAP-TISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 200 EDGANLSYNGD 210
+G +
Sbjct: 240 -NGTFQQSTQE 249
Score = 70.8 bits (173), Expect = 2e-14
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSII 165
+ +PR+ L+ + L + NV +D Y+C + RS L V+ P
Sbjct: 506 SLPVSPRLQLSNGNRT---LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562
Query: 166 DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ D AN+ L+C + P P WR +G +
Sbjct: 563 II-SPPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQQHTQV 605
Score = 67.7 bits (165), Expect = 2e-13
Identities = 36/244 (14%), Positives = 66/244 (27%), Gaps = 72/244 (29%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
V L + V C + + W WV
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPET----QDATYLW---WVN---------- 147
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN-----------------TNP 113
+ + +PR+ L+ + L + NV +D Y C+
Sbjct: 148 NQSLPVSPRLQLSNGNR---TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD 204
Query: 114 RISLTYNDHR---------------------SWFLN-----------IKNVQESDRGWYM 141
+++ + SWF+N I N+ ++ G Y
Sbjct: 205 APTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYT 264
Query: 142 CQVN---TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198
CQ + T R+ + V P ++ V ++ V L C+ + Y+ W
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 199 REDG 202
Sbjct: 325 NNQS 328
Score = 65.4 bits (159), Expect = 1e-12
Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 86/261 (32%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
V F + V L C + W +
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ--------NTTYLWWVNNQS------- 328
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWY-------------------------- 105
+ +PR+ L+ ++ L + +V +D G Y
Sbjct: 329 --LPVSPRLQLSNDNRT---LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD 383
Query: 106 ------------------MCQVNTNPRISLTYNDHRSWF-----------LNIKNVQESD 136
C +NP + W L I N+ E +
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQYS------WLIDGNIQQHTQELFISNITEKN 437
Query: 137 RGWYMCQV-NTDPMRSRQGYLQVVVPPSI--IDKDTSTDLVVREQANVTLNCKAQGYPEP 193
G Y CQ N+ SR + V + ++ V ++ V C+ +
Sbjct: 438 SGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT 497
Query: 194 YVMWRREDGANLSYNGDTELL 214
Y+ W +G +L + +L
Sbjct: 498 YLWWV--NGQSLPVSPRLQLS 516
Score = 62.3 bits (151), Expect = 1e-11
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWF----LNIKNVQESDRGWYMCQV 144
SW+ + Y Y+ + L I+N+ ++D G+Y V
Sbjct: 32 SWYKGERVDGNRQIIGY-VIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHV 90
Query: 145 NTDPMRSRQ--GYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
+ + + G +V ++ V ++ V C+ + Y+ W +
Sbjct: 91 IKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWV--NN 148
Query: 203 ANLSYNGDTELLT 215
+L + +L
Sbjct: 149 QSLPVSPRLQLSN 161
Score = 61.9 bits (150), Expect = 1e-11
Identities = 37/228 (16%), Positives = 59/228 (25%), Gaps = 41/228 (17%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH------- 70
N + G + L+C + W V + L I
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAA---SNPPAQYSWFVNGTFQQSTQELFIPNITVNNS 260
Query: 71 -------HNVITQNPR-------ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRIS 116
HN T R + N V++ D C+
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTY 320
Query: 117 LTY-------NDHRSWF------LNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVP 161
L + R L + +V +D G Y C + + S L V+
Sbjct: 321 LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
P + + R N++L+C A P W DG +
Sbjct: 381 PDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQ 426
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 70.2 bits (172), Expect = 2e-15
Identities = 22/188 (11%), Positives = 44/188 (23%), Gaps = 56/188 (29%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+ + V ++VG C
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTA---------------------------------IG 28
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
P + + + + R + + RS L I N D
Sbjct: 29 EPESIDW------YNPQGEKIISTQR------------VVVQKEGVRS-RLTIYNANIED 69
Query: 137 RGWYMCQVNTDP--MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
G Y CQ + L++ + + + ++ + + C+ P P
Sbjct: 70 AGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPA 127
Query: 195 VMWRREDG 202
V W +
Sbjct: 128 VSWLYHNE 135
Score = 45.2 bits (107), Expect = 3e-06
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 24/93 (25%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
F E + G DA + C V V+W+ + + +
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVS----------SSPAPAVSWLY-HNEEVTT------ 139
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ R ++ N++ L I N+ +SD G Y C
Sbjct: 140 ISDNRFAMLANNN----LQILNINKSDEGIYRC 168
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 9/59 (15%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
LQV + S + + + C A G PE + G + +
Sbjct: 3 LQVTISLS--------KVELSVGESKFFTCTAIGEPESIDWYNP-QGEKIISTQRVVVQ 52
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 70.5 bits (172), Expect = 2e-15
Identities = 38/180 (21%), Positives = 53/180 (29%), Gaps = 45/180 (25%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
P TV VG L C D + ++ +R Q + ++ Q+ R +L
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECT-------ELEGIRASLQKV---ENDTSLQSERATL 57
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
+I +VQ D G Y C
Sbjct: 58 LEEQLP---------------------------------LGKALFHIPSVQVRDSGQYRC 84
Query: 143 QVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
V YL V V S + DT V V L C+A+GYP V W+
Sbjct: 85 LVICGAA-WDYKYLTVKVKASYMRIDTRILEVP-GTGEVQLTCQARGYPLAEVSWQNVSV 142
Score = 31.9 bits (72), Expect = 0.093
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 13/64 (20%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR-----EDGANLSYNGDT 211
V P + V ++V+L C + R + +
Sbjct: 4 TVTAPKEVY--------TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERA 55
Query: 212 ELLT 215
LL
Sbjct: 56 TLLE 59
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 71.9 bits (176), Expect = 3e-15
Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 54/243 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW------QVAWVRVDTQTILSIHH 71
P +P + V G L CV + + W + +ILS ++
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG-------SVEWDGPPSPHWTLYSDGSSSILSTNN 57
Query: 72 ---------------NVITQNPRISLTYNDHRSWFLNIKNVQESDRG---WYMCQV---N 110
+ + + I L D + + C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV 117
Query: 111 TNPRISLTYNDHR--------SWF----LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQV 158
+SL R S+ I + Y C + +++
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177
Query: 159 VV------PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
V PP++ +LV + C A + ++ + + L+ ++
Sbjct: 178 KVQKVIPGPPALTLV--PAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSD 235
Query: 213 LLT 215
Sbjct: 236 FHN 238
Score = 43.8 bits (103), Expect = 1e-05
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 15/96 (15%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + G A + C + + + V +T+ + +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSA------SSVDVNFDVFLQHNNTKLAIPQQSDFHNNR 240
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ LT LN+ V G Y C +N
Sbjct: 241 YQKVLT--------LNLDQVDFQHAGNYSCVA-SNV 267
Score = 43.4 bits (102), Expect = 2e-05
Identities = 25/203 (12%), Positives = 46/203 (22%), Gaps = 61/203 (30%)
Query: 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI------------- 66
+ V V +DALL C++ + V+ VRV + +
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLL------TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 67 LSIHH----------------NVITQNPRISLTYNDHRSWFLNIKN------VQESDRGW 104
+IH + I L + +
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 105 YMCQVNTNP-------------------RISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 145
+C ++ + LN+ V G Y C +
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265
Query: 146 TDPMR-SRQGYLQVVVPPSIIDK 167
+ S + +VV
Sbjct: 266 NVQGKHSTSMFFRVVESAGNSHH 288
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 72.6 bits (178), Expect = 3e-15
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 54/202 (26%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
F ++T +G LL C V G I W + + Q + N I
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVI---GDPMPTIHW-----QKNQQDL-----NPIPG 167
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
+ R+ + + L I +Q D G Y C NP + T
Sbjct: 168 DSRVVVLPSGA----LQISRLQPGDSGVYRCSA-RNPASTRT------------------ 204
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDT----STDLVVREQANVTLNCKAQGYPE 192
+ ++++ P + + ++++ E + L C GYP
Sbjct: 205 --------------GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 193 PYVMWRREDGANLSYNGDTELL 214
P W R + + LL
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLL 272
Score = 69.1 bits (169), Expect = 5e-14
Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 57/190 (30%)
Query: 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN 72
+F + NV G+DA+L C V G
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCV---SG-------------------------- 247
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNV 132
P S T W + +Q + + + + L I NV
Sbjct: 248 ----YPPPSFT------WLRGEEVIQLRSKKYSLLGGSN---------------LLISNV 282
Query: 133 QESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYP 191
+ D G Y C V + S L V+VPP ++ ++L E ++ C G P
Sbjct: 283 TDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKP 340
Query: 192 EPYVMWRRED 201
P V W +
Sbjct: 341 VPTVNWMKNG 350
Score = 59.5 bits (144), Expect = 1e-10
Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 47/195 (24%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
HF + G + LL C + R + W + D + + Q
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAE------SDRGVPVIKWKK-DGLILALGMDDRKQQL 74
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P SL + + + D G Y C+ +
Sbjct: 75 PNGSLLIQN-----ILHSRHHKPDEGLYQCEASLG------------------------- 104
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
++ + SR + V P + + + + V L C+ G P P + W
Sbjct: 105 -------DSGSIISRTAKVMVAGPLRFLSQ--TESITAFMGDTVLLKCEVIGDPMPTIHW 155
Query: 198 RREDGANLSYNGDTE 212
++ + +L+
Sbjct: 156 QK-NQQDLNPIPGDS 169
Score = 45.6 bits (108), Expect = 5e-06
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 24/96 (25%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
P F N+ D C V G + W N V+
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAV---SGKPVPTVNWM---------------KNGDVVI 354
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ + + L I V +SD G+Y C
Sbjct: 355 PSDYFQIVGGSN----LRILGVVKSDEGFYQCVAEN 386
Score = 44.1 bits (104), Expect = 1e-05
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 151 SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLSYNG 209
+ + + +D V NV LNC A+ P + W++ DG L+
Sbjct: 11 HHHHHHGGRRSLHFVSE--PSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGM 67
Query: 210 DT 211
D
Sbjct: 68 DD 69
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 70.3 bits (172), Expect = 4e-15
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPS--- 163
+ RI ++ W L +++V SD+G Y C V N + +L VV
Sbjct: 59 EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRP 118
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
I+ + +V CK +P++ W + N S G
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Score = 46.4 bits (110), Expect = 2e-06
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQ-VAWVRVDTQTIL 67
V S A N + VG D C V I W
Sbjct: 110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKV---YSDAQPHIQWIKHVEKNGSKYGPD 166
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + + ++ I+ + + L + NV E+D G Y+C+V +N
Sbjct: 167 GLPYLKVLKHSGINSSNAEV----LALFNVTEADAGEYICKV-SNY 207
Score = 41.8 bits (98), Expect = 5e-05
Identities = 10/54 (18%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 151 SRQGYLQVVVPPSII--DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
P +K V V C A G P P + W +
Sbjct: 5 FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 68.8 bits (168), Expect = 9e-15
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 45/190 (23%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
+ +PNV G + L + L ++ ++ W+ Q IL N +
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQ------RLTWLHTTNQKILEYFPN--GKKTVFE 55
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYM 141
+ D R+ L D + L I NV + DRG Y
Sbjct: 56 SVFKD---------------------------RVDL---DKTNGALRIYNVSKEDRGDYY 85
Query: 142 CQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
++ + + ++V S ++ E +N TL C+ + + +
Sbjct: 86 MRMLHETEDQWKITMEVYEMV-------SKPMIYWECSNATLTCEVLEGTDVELKLYQGK 138
Query: 202 GANLSYNGDT 211
S T
Sbjct: 139 EHLRSLRQKT 148
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 70.1 bits (171), Expect = 1e-14
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 9/109 (8%)
Query: 106 MCQVN-----TNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVV 160
C T +++ + + + G Y C + + Y+ V
Sbjct: 33 TCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNG--LTSSIYVFVRD 90
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
P + L +E ++ + C DG +L +
Sbjct: 91 PAKLFL--VGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137
Score = 62.1 bits (150), Expect = 9e-12
Identities = 28/259 (10%), Positives = 56/259 (21%), Gaps = 87/259 (33%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66
+P +S E P + V G L C+ + V W
Sbjct: 2 QPSASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD-----------FVRWTF------ 44
Query: 67 LSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTN-------------- 112
+++ + + + G Y C +
Sbjct: 45 -----------KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAK 93
Query: 113 ---------------------------PRISLTYND-------------HRSWFLNIKNV 132
+ SL D ++
Sbjct: 94 LFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVK 153
Query: 133 QESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSIIDKDT--STDLVVREQANVTLNCKAQ 188
+ R C D + S + L+V I + T ++++ T+ C +
Sbjct: 154 RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK 213
Query: 189 GYPEPY-VMWRREDGANLS 206
MW + +
Sbjct: 214 DVSTSVNSMWLKMNPQPQH 232
Score = 44.0 bits (103), Expect = 1e-05
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI 74
+P + P + + G + C + K + W++++ Q H +
Sbjct: 186 KAIPVVSVPETSHLLKKGDTFTVVCTI------KDVSTSVNSMWLKMNPQPQ---HIAQV 236
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
N +N R L I + + D G +MC N
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYAN 272
Score = 34.7 bits (79), Expect = 0.015
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVV 159
QV N +N R L I + + D G +MC N + L+VV
Sbjct: 235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 70.7 bits (172), Expect = 1e-14
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 107 CQVNTNPRISLTYNDHRSW----FLNIKNVQESDRGWYMCQV-----NTDPMRSRQGYLQ 157
C+ + +++L + L +K E + + C +++ L+
Sbjct: 305 CEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207
V+ P + ++D + E + T C+A G P P + ++ L
Sbjct: 365 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414
Score = 45.2 bits (106), Expect = 6e-06
Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 3/191 (1%)
Query: 13 SESLMPHFAEPIPNVTVTVGRD-ALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
E + AE V V A +C + +GL + + +L
Sbjct: 132 REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP 191
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKN 131
+ + + L+ S+ ++ + ++TY + +
Sbjct: 192 PQLVSPRVLEVDTQGTVVCSLDGLFPV-SEAQVHLALGDQRLNPTVTYGNDSFSAKASVS 250
Query: 132 VQESDRGWYMCQ-VNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190
V D G +S++ V + T V E VT+ C+A
Sbjct: 251 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR 310
Query: 191 PEPYVMWRRED 201
+ +
Sbjct: 311 AKVTLNGVPAQ 321
Score = 36.8 bits (84), Expect = 0.004
Identities = 25/213 (11%), Positives = 54/213 (25%), Gaps = 51/213 (23%)
Query: 10 SSVSESLMPHFAEPIP-NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
+ ++ P E P VG++ L C V+ L + + + +
Sbjct: 78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLN 128
V + ++ + C+ + R
Sbjct: 138 EPAEVT-----------------TTVLVRRDHHGANFSCRTELDLR-------------- 166
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ 188
+G + + + P + + L P + + V+ T+ C
Sbjct: 167 -------PQGLELFENTSAPYQLQTFVLPATPPQLVSPR------VLEVDTQGTVVCSLD 213
Query: 189 G---YPEPYVMWRREDG---ANLSYNGDTELLT 215
G E V D ++Y D+
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 246
Score = 34.8 bits (79), Expect = 0.016
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 97 VQESDRGWYMCQVNTNPRISLTY---------NDHRSWFLNIKNVQESDRGWYMCQV-NT 146
+ C + + + L + + + MC
Sbjct: 11 LPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCP 70
Query: 147 DPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPY--VMWRRED 201
D + + +L V P + + N+TL C+ +G P V+ R +
Sbjct: 71 DGQSTAKTFLTVYWTPERV-ELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127
Score = 29.1 bits (64), Expect = 1.2
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE-DGANLSYNGDTELL 214
Q V PS +++ +V + C + L G+ +
Sbjct: 1 QTSVSPS--------KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKV 51
Score = 27.9 bits (61), Expect = 2.4
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 97 VQESDRGWYMCQVNTNPRISLTYNDHRSWFL---NIKNVQESDRGWYMCQ-VNTDPMRSR 152
E+ + MCQ NP L ++ L V G Y+C+ +T +R
Sbjct: 382 WPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTR 441
Query: 153 QGYLQVVVP 161
+ + V+ P
Sbjct: 442 EVTVNVLSP 450
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 69.2 bits (169), Expect = 1e-14
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPS--- 163
+ RI H+ W L +++V SDRG Y C V N + L V+
Sbjct: 55 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 114
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
I+ + ++V +CK +P++ W + N S
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGS 157
Score = 51.5 bits (123), Expect = 3e-08
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
V S A N T +G D C V I W + +
Sbjct: 106 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWL--KHVEVNGSKVG 160
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ ++ + L + NV E D G Y+C+ TN
Sbjct: 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA-TNF 204
Score = 39.9 bits (93), Expect = 2e-04
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 159 VVPPSII--DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
P ++ L V V C A G P P + W + +G
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIG 63
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 67.8 bits (166), Expect = 2e-14
Identities = 36/202 (17%), Positives = 60/202 (29%), Gaps = 55/202 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
PHF E + N+ V +A L C V G +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKV------TG---------------------------H 31
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P+ + W+ K + RI + L I +V + D
Sbjct: 32 PKPIVK------WYRQGKEIIADGL---------KYRIQEFKGGYHQ--LIIASVTDDDA 74
Query: 138 GWYMCQ-VNTDPMRSRQGYLQVVVPPSIIDKDTS---TDLVVREQANVTLNCKAQGYPEP 193
Y + N S L+V VP I T + V++ G P+P
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 194 YVMWRREDGANLSYNGDTELLT 215
+ W++ + NG +++
Sbjct: 135 VITWQK-GQDLIDNNGHYQVIV 155
Score = 51.3 bits (123), Expect = 2e-08
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 23/108 (21%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQT 65
V ++ +P E + V G + G + W +
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS----------GKPDPVITWQK-GQD- 143
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+I N + + + V+ D G+Y+ N
Sbjct: 144 -------LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA-KNR 183
Score = 44.3 bits (105), Expect = 6e-06
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ P ++ +L VR Q+N TL CK G+P+P V W R G + +G
Sbjct: 3 MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGL 50
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 69.9 bits (171), Expect = 2e-14
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
L+I+NV D G Y C+ N + QG + + P +D TD +++ +C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV--ITDTEADIGSDLRWSC 316
Query: 186 KAQGYPEPYVMWRREDGANLSYNG 209
A G P P V W R DG L+
Sbjct: 317 VASGKPRPAVRWLR-DGQPLASQN 339
Score = 65.3 bits (159), Expect = 8e-13
Identities = 35/193 (18%), Positives = 51/193 (26%), Gaps = 41/193 (21%)
Query: 11 SVSESLMPHF-AEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSI 69
S+ + F AE V +T G + C + L W +
Sbjct: 94 SLRFGFLQEFSAEERDPVKITEGWGVMFTCSPP--PHYPALSYRWLLN----------EF 141
Query: 70 HHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNI 129
+ + R + L I + SD G Y C T+ +T
Sbjct: 142 PNFIPADGRRFVSQTTGN----LYIAKTEASDLGNYSCFA-TSHIDFIT----------- 185
Query: 130 KNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG 189
V + + I D VTL C A G
Sbjct: 186 ------------KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFG 233
Query: 190 YPEPYVMWRREDG 202
P P + WR+ DG
Sbjct: 234 NPVPQIKWRKLDG 246
Score = 50.6 bits (121), Expect = 1e-07
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 107 CQVNTNPRISLT----------YNDHRSWFLN-----IKNVQESDRGWYMCQVNTD--PM 149
C+ NP + D R + V+ D G Y C +
Sbjct: 29 CRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTV 88
Query: 150 RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMWRREDGANL 205
SR+ L+ ++ + + E V C YP W + N
Sbjct: 89 VSREASLRFGFLQEFSAEERDP-VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF 144
Score = 39.8 bits (93), Expect = 4e-04
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 161 PPSIID--KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
P + T E+ VTL C+A+ P W+ +G L D+
Sbjct: 4 GPVFEEQPAHTLFPEGSAEE-KVTLTCRARANPPATYRWKM-NGTELKMGPDS 54
Score = 39.1 bits (91), Expect = 6e-04
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 28/99 (28%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIG---WQVAWVRVDTQTILSIHHNVI 74
P + + I + +G D +CV G V W+R +
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVAS----------GKPRPAVRWLRDG---------QPL 335
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
RI ++ + L + D G Y C N
Sbjct: 336 ASQNRIEVSGGE-----LRFSKLVLEDSGMYQCVA-ENK 368
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 69.6 bits (170), Expect = 3e-14
Identities = 39/261 (14%), Positives = 65/261 (24%), Gaps = 63/261 (24%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI---- 66
V + ++ + V G A++ C++ + + W
Sbjct: 97 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 156
Query: 67 ---------LSIHH---------------NVITQNPRISLTYNDHR-------------S 89
L I + +T R+S T +
Sbjct: 157 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPA 216
Query: 90 WFLNIKNVQESDRGWYMCQVNTNPRISLT---------------YNDHRSWF---LNIKN 131
+ + +C P S ND L IK+
Sbjct: 217 LVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 276
Query: 132 VQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY 190
D G Y+C V N+ S + L V P S V C+ G
Sbjct: 277 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGN 334
Query: 191 PEPYVMWRREDGANLSYNGDT 211
P V W + DG + ++
Sbjct: 335 PIKTVSWMK-DGKAIGHSESV 354
Score = 46.9 bits (111), Expect = 1e-06
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
P + + T+ + + CKA G P P ++W R DG +
Sbjct: 2 KGPVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG 47
Score = 42.2 bits (99), Expect = 5e-05
Identities = 26/197 (13%), Positives = 45/197 (22%), Gaps = 61/197 (30%)
Query: 18 PHFA-EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNV 73
P F EP + + A + C G ++ W+R D T + +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKAS----------GNPMPEIIWIRSD-GTAVGDVPGL 52
Query: 74 ITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ 133
+ L + D Q
Sbjct: 53 RQISSDGKLV----------FPPFRAEDYR-----------------------------Q 73
Query: 134 ESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY- 190
E Y C + SR +++ VV V + + C +
Sbjct: 74 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD--VNKEHVIRGNSAVIKCLIPSFV 131
Query: 191 --PEPYVMWRREDGANL 205
V W ++ N
Sbjct: 132 ADFVEVVSWHTDEEENY 148
Score = 36.5 bits (84), Expect = 0.004
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 31/94 (32%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
P TV GR A+ C G + W + I
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYT---GNPIKTVSWM---------------KDGKAIG 349
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
+ + L I++V++ D+G Y C V
Sbjct: 350 HSESV-----------LRIESVKKEDKGMYQCFV 372
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 68.7 bits (168), Expect = 4e-14
Identities = 41/199 (20%), Positives = 56/199 (28%), Gaps = 59/199 (29%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
S P+ V R A + C G
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAA------SG------------------- 134
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLN 128
NP +T WF + V S N RI + L
Sbjct: 135 --------NPDPEIT------WFKDFLPVDPSAS---------NGRIKQLRSGA----LQ 167
Query: 129 IKNVQESDRGWYMCQV-NTDPMR-SRQGYLQVVV---PPSIIDKDTSTDLVVREQANVTL 183
I++ +E+D+G Y C N+ +R S L V V P + NV +
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL--PMSHEIMPGGNVNI 225
Query: 184 NCKAQGYPEPYVMWRREDG 202
C A G P PYV W +
Sbjct: 226 TCVAVGSPMPYVKWMQGAE 244
Score = 59.5 bits (144), Expect = 6e-11
Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 58/191 (30%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F + + G A C G +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQAT----------G-----------------------D 33
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ-ESD 136
P+ +T W K +VN+ ++ +++ L I+ ++ D
Sbjct: 34 PKPRVT------WNKKGK------------KVNSQRFETIEFDESAGAVLRIQPLRTPRD 75
Query: 137 RGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTS-----TDLVVREQANVTLNCKAQGY 190
Y C N+ + L V+ + + VV T+ C A G
Sbjct: 76 ENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGN 135
Query: 191 PEPYVMWRRED 201
P+P + W ++
Sbjct: 136 PDPEITWFKDF 146
Score = 44.4 bits (105), Expect = 8e-06
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
PP I + D + + C+A G P+P V W + G ++ +
Sbjct: 3 GEEPPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIE 56
Score = 39.4 bits (92), Expect = 4e-04
Identities = 15/151 (9%), Positives = 31/151 (20%), Gaps = 59/151 (39%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F+ + + G + + CV +
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVA---------------------------------VGS 232
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P + W +++ D V ++ D
Sbjct: 233 PMPYVK------WMQGAEDLTPEDD----MPVGR---------------NVLELTDVKDS 267
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDK 167
Y C ++ + + V P K
Sbjct: 268 ANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 66.9 bits (163), Expect = 6e-14
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 45/191 (23%)
Query: 24 IPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP---- 78
+ +VT V A L+C + +++ RI WQ + + +L++ + P
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQK-----EKKMVLTMMSGDMNIWPEYKN 55
Query: 79 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRG 138
R + + + I ++ SD G Y C V +++ +
Sbjct: 56 RTIFDITN--NLSIVILALRPSDEGTYECVVLKYE-------------------KDAFKR 94
Query: 139 WYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMW 197
++ +V L V + +D + + C G +PEP++ W
Sbjct: 95 EHLAEVT----------LSVKADFPTP---SISDFEIPTSNIRRIICSTSGGFPEPHLSW 141
Query: 198 RREDGANLSYN 208
+ N
Sbjct: 142 LENGEELNAIN 152
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 66.5 bits (162), Expect = 8e-14
Identities = 32/192 (16%), Positives = 50/192 (26%), Gaps = 51/192 (26%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
P V + L+C GF +PR+
Sbjct: 9 SSEPEVRIPENNPVKLSCAY---SGF----------------------------SSPRVE 37
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYM 141
W + + + R++ + K+V D G Y
Sbjct: 38 --------WKFDQGDTTRLVCYNNKITASYEDRVTFLPTG-----ITFKSVTREDTGTYT 84
Query: 142 CQVN---TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMW 197
C V+ + + L V+VPPS + L C Q G P W
Sbjct: 85 CMVSEEGGNSYGEVKVKLIVLVPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Query: 198 RREDGANLSYNG 209
+ DG + N
Sbjct: 143 FK-DGIVMPTNP 153
Score = 51.1 bits (122), Expect = 3e-08
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
S+ + ++ + E V L+C G+ P V W+ + G +T
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT 56
Score = 47.3 bits (112), Expect = 7e-07
Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 10/96 (10%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + T+G A+L C G W + + N
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSE--QDGSPPSEY----TWFKDGIVMPTNPKSTRAFSN 161
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
L L + SD G Y C+ N
Sbjct: 162 SSYVLNPTTGE---LVFDPLSASDTGEYSCEA-RNG 193
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 68.1 bits (166), Expect = 8e-14
Identities = 28/187 (14%), Positives = 46/187 (24%), Gaps = 35/187 (18%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ G L+C G +G WV+ T + +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPP-----PGGGPMG-PTVWVKDGTG---------LVPS 53
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
R+ + L + N D G Y C+ R V ++
Sbjct: 54 ERVLV-----GPQRLQVLNASHEDSGAYSCRQR---------LTQRVLCHFSVRVTDAPS 99
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSII--DKDTSTDLVVREQANVTLNCKAQGYPEPYV 195
+ D + P ++ L V V C A G P P +
Sbjct: 100 S----GDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSI 155
Query: 196 MWRREDG 202
W +
Sbjct: 156 SWLKNGR 162
Score = 67.3 bits (164), Expect = 1e-13
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPS--- 163
+ RI H+ W L +++V SDRG Y C V N + L V+
Sbjct: 163 EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 222
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGAN 204
I+ + ++V +CK +P++ W + N
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 263
Score = 45.4 bits (107), Expect = 5e-06
Identities = 20/92 (21%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
A N T +G D C V I W V V+ + +T
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVL 278
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
D L++ NV D G Y C
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 67.6 bits (165), Expect = 1e-13
Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 43/188 (22%)
Query: 17 MPHFA-EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVIT 75
P + E + V V G L C G I W +S IT
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPP--PGLPSPVIFW------------MSSSMEPIT 160
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESD-RGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
Q+ R+S +N L NV D + Y C T+ + +K
Sbjct: 161 QDKRVSQGHNGD----LYFSNVMLQDMQTDYSCNA-RFH---FTHTIQQKNPFTLK---- 208
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
V T + + P + + T++ +V ++ L C A G P P
Sbjct: 209 ---------VLTTRGVAER------TPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD 253
Query: 195 VMWRREDG 202
+ W ++ G
Sbjct: 254 IAWYKKGG 261
Score = 66.4 bits (162), Expect = 3e-13
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
L I NV E D G Y C N ++V P +D+ +L++ + L C
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE--PKNLILAPGEDGRLVC 334
Query: 186 KAQGYPEPYVMWRRE 200
+A G P+P V W
Sbjct: 335 RANGNPKPTVQWMVN 349
Score = 50.6 bits (121), Expect = 9e-08
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTD 147
W N + + +PR+S+ E G Y C
Sbjct: 50 HWTRNSRFFN----------IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNK 99
Query: 148 --PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYPEPYVMWRREDGAN 204
S + LQV P ++ +VV+E A +TL C G P P + W
Sbjct: 100 FGTALSNRIRLQVSKSPLWPKENLD-PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
Query: 205 LSYN 208
++ +
Sbjct: 159 ITQD 162
Score = 49.9 bits (119), Expect = 2e-07
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
++ PP+I K ++ D +V + N+ + C+A+G P P W R + + D
Sbjct: 11 NELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKD 63
Score = 40.2 bits (94), Expect = 2e-04
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P++ + N+ + G D L C + G + W V+ + + S N +
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRAN---GNPKPTVQW-----MVNGEPLQSAPPNPNREV 364
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
++ ++ Q S R Y C
Sbjct: 365 AGDTII----------FRDTQISSRAVYQCNT 386
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 63.3 bits (154), Expect = 2e-13
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 19 HFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP 78
IP++ G + L D L ++ ++ W+ Q IL ++N
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGPYR------RITWLHTKNQKILEYNYNSTKTIF 58
Query: 79 ------RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYN 120
R+ L + + L+I NV++ D+G Y +V L
Sbjct: 59 ESEFKGRVYL---EENNGALHISNVRKEDKGTYYMRVLRETENELKIT 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 65.4 bits (159), Expect = 2e-13
Identities = 30/197 (15%), Positives = 49/197 (24%), Gaps = 50/197 (25%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+V V L C GF +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYS---GF----------------------------SS 30
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
PR+ W + R++ + + + +V D
Sbjct: 31 PRVE--------WKFVQGSTTALVCYNSQITAPYADRVTFSSSG-----ITFSSVTRKDN 77
Query: 138 GWYMCQVNTD---PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEP 193
G Y C V+ + +L V+VPPS S V L C G P
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI--SVPSSVTIGNRAVLTCSEHDGSPPS 135
Query: 194 YVMWRREDGANLSYNGD 210
W ++ + L+ +
Sbjct: 136 EYSWFKDGISMLTADAK 152
Score = 44.2 bits (104), Expect = 7e-06
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P +VT+G A+L C G W D ++L+
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSE--HDGSPPSEYSW-----FKDGISMLTADAKKTRAF 157
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
S T + L V D G Y CQ N
Sbjct: 158 MNSSFTIDPKSG-DLIFDPVTAFDSGEYYCQA-QNG 191
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 66.9 bits (163), Expect = 2e-13
Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 34/194 (17%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
V S ++ + T GR L CV+ N + I W+ +
Sbjct: 92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPN--AYPKPLITWKK------RLSGAD 143
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLN 128
+ +V + RI+ + +F + SD Y+C N +
Sbjct: 144 PNADVTDFDRRITAGPD-GNLYFTIVTKEDVSDIYKYVCTA-KNA---AVDEEVVLVEYE 198
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ 188
IK V + + G+ P S D++ + + C
Sbjct: 199 IKGVTKDNSGYK-------------------GEPVPQY--VSKDMMAKAGDVTMIYCMYG 237
Query: 189 GYPEPYVMWRREDG 202
P Y + +
Sbjct: 238 SNPMGYPNYFKNGK 251
Score = 63.8 bits (155), Expect = 3e-12
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 108 QVNTNPRISLT-YNDHRSWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSI 164
VN NP +T +N L K D G Y C+V+ + L VV P
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311
Query: 165 IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
K +VV++ +VT+ CK G P P V+W + LS
Sbjct: 312 EQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLS 351
Score = 53.8 bits (129), Expect = 7e-09
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 20/125 (16%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTD- 147
SW + K+ + + + + L Q SD G Y C T
Sbjct: 40 SWKKDGKSYNWQEHNAALRKDEGS--------------LVFLRPQASDEGHYQCFAETPA 85
Query: 148 -PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK-AQGYPEPYVMWRREDGANL 205
SR + + K + + E L+C YP+P + W++ +
Sbjct: 86 GVASSRVISFRKTYLIASPAK--THEKTPIEGRPFQLDCVLPNAYPKPLITWKK-RLSGA 142
Query: 206 SYNGD 210
N D
Sbjct: 143 DPNAD 147
Score = 45.7 bits (108), Expect = 4e-06
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY-VMWRREDGANLSYNGDTELL 214
L V P + D+ +++ RE L C +G + W++ DG + ++ L
Sbjct: 1 LPVDKYPVLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL 57
Query: 215 T 215
Sbjct: 58 R 58
Score = 33.0 bits (75), Expect = 0.054
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 24/97 (24%)
Query: 18 PHFA-EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
P + +P + V G+D + C V G + W H+
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVT---GLPAPNVVWS--------------HNAKPLS 351
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
R ++T + L IK V+ D+G+Y C+ TN
Sbjct: 352 GGRATVTDSG-----LVIKGVKNGDKGYYGCRA-TNE 382
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 63.7 bits (155), Expect = 1e-12
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 127 LNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVVPPSIIDKDTS-------------T 171
L V D G+Y+C+VN + S+ L V P + T
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+ + + L C A G P P+ W + + L++ +
Sbjct: 127 SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETKKLYM 168
Score = 46.4 bits (110), Expect = 2e-06
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 151 SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ +VP V V L C+A G+P W + +
Sbjct: 6 HHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNGNT 64
Query: 211 TEL 213
+EL
Sbjct: 65 SEL 67
Score = 39.5 bits (92), Expect = 3e-04
Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 36/118 (30%)
Query: 2 VSYFPEPVSSVSESLM---PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---Q 55
V PE + + + + G +L CV G
Sbjct: 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV----------GSPIPH 149
Query: 56 VAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
W + + LT+ + + V +G Y C V N
Sbjct: 150 YQWFKNEL-----------------PLTHETKKL--YMVPYVDLEHQGTYWCHV-YND 187
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 63.7 bits (155), Expect = 1e-12
Identities = 33/200 (16%), Positives = 51/200 (25%), Gaps = 59/200 (29%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P F + T G A C G +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQAT----------G-----------------------D 33
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ-ESD 136
PR + W K V + ++D L I+ ++ D
Sbjct: 34 PRPKIV------WNKKGKKVSNQ------------RFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 137 RGWYMCQ-VNTDPMRSRQGYLQVVVPPSIIDKDTS-----TDLVVREQANVTLNCKAQGY 190
Y C N S L V+ I + VV T+ C A G
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 191 PEPYVMWRREDGANLSYNGD 210
P+P + W + D + + +
Sbjct: 136 PDPEITWFK-DFLPVDTSNN 154
Score = 45.6 bits (108), Expect = 2e-06
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
PP D + C+A G P P ++W + G +S
Sbjct: 3 GETPPRFTRT--PVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVS 48
Score = 44.4 bits (105), Expect = 7e-06
Identities = 27/149 (18%), Positives = 39/149 (26%), Gaps = 51/149 (34%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
P V R A + C G
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAA------SG--------------------------- 134
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
NP +T WF + V S+ + Q+ + +L I+ +ESD
Sbjct: 135 NPDPEIT------WFKDFLPVDTSNNNGRIKQLRSESIGALQ----------IEQSEESD 178
Query: 137 RGWYMCQV-NTDPMR-SRQGYLQVVVPPS 163
+G Y C N+ R S L V
Sbjct: 179 QGKYECVATNSAGTRYSAPANLYVRGTKH 207
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 64.2 bits (156), Expect = 1e-12
Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 49/194 (25%)
Query: 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPR 79
+ VTV G++A+L C++ + V+ +R + +L V +P
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLI------TDPALKDSVSLMREGGRQVLR--KTVYFFSPW 143
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGW 139
I+ + D Y+C+ N R S + +L + V
Sbjct: 144 RGFI----------IRKAKVLDSNTYVCKTMVNGRESTS----TGIWLKVNRV------- 182
Query: 140 YMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
PP I + + LV + C A + + +
Sbjct: 183 ------------------HPEPPQIKLE--PSKLVRIRGEAAQIVCSATNAEVGFNVILK 222
Query: 200 EDGANLSYNGDTEL 213
L +++
Sbjct: 223 RGDTKLEIPLNSDF 236
Score = 41.5 bits (97), Expect = 9e-05
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 15/96 (15%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + G A + C +G+ V R DT+ + ++ +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSA------TNAEVGFNVILKRGDTKLEIPLNSDFQDNY 240
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ L++ V D G Y C +N
Sbjct: 241 YKKVRA--------LSLNAVDFQDAGIYSCVA-SND 267
Score = 38.4 bits (89), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQVVVPPSI 164
L++ V D G Y C + D + QVV
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 60.3 bits (146), Expect = 3e-12
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
E N++ G +L C + + QV W + D + +P
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVT-----QVNWEQQDQLLAICNADLGWHISPSFK 62
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
L ++++ +D G Y C +T P
Sbjct: 63 DRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYP 94
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 62.0 bits (150), Expect = 7e-12
Identities = 32/239 (13%), Positives = 57/239 (23%), Gaps = 79/239 (33%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
P P + + V +L C V W R+ + ++
Sbjct: 6 PGPELVLNVSSTFVLTCSGSA-----------PVVWERMSQEPP-----------QEMAK 43
Query: 83 TYNDHRSWFLNIKNVQESDRGWYM------------------------------------ 106
+ S L + N+ D G Y
Sbjct: 44 AQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL 103
Query: 107 -------------CQVNT-NPRISLTYND-----HRSWFLNIKNVQESDRGWYMCQ--VN 145
C+V ++L + + Y+C+ +
Sbjct: 104 FIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIG 163
Query: 146 TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGAN 204
+ S Y+ + SI + VVR+ N+TL C G W +
Sbjct: 164 DREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES 222
Score = 41.2 bits (96), Expect = 1e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ + V G + L C+V + W ++ ++
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVV-------NFEWTYPRKES-----GRLVEPV 229
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
L H L+I + + D G Y C V
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT 262
Score = 35.1 bits (80), Expect = 0.011
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 109 VNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVV 160
V L H L+I + + D G Y C V + + + + V
Sbjct: 226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 61.0 bits (148), Expect = 1e-11
Identities = 35/203 (17%), Positives = 51/203 (25%), Gaps = 63/203 (31%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P N V VG A C +G +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAA------RG---------------------------D 33
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ-ESD 136
P S+ W N K V + R ++ L I+ V+ D
Sbjct: 34 PPPSIV------WRKNGKKVSGTQS-----------RYTVLEQPGGISILRIEPVRAGRD 76
Query: 137 RGWYMCQ-VNTD-PMRSRQGYLQVVV-------PPSIIDKDTSTDLVVREQANVTLNCKA 187
Y C N S L + P I V+ V + CKA
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG--PGTRVIEVGHTVLMTCKA 134
Query: 188 QGYPEPYVMWRREDGANLSYNGD 210
G P P + W + + + +
Sbjct: 135 IGNPTPNIYWIK-NQTKVDMSNP 156
Score = 45.2 bits (107), Expect = 3e-06
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 27/108 (25%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQT 65
+ + P + + VG L+ C IG + W++ +
Sbjct: 102 EGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA----------IGNPTPNIYWIK-NQTK 150
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ NPR SL + FL I+N +E D+G Y C N
Sbjct: 151 V-------DMSNPRYSL-----KDGFLQIENSREEDQGKYECVA-ENS 185
Score = 45.2 bits (107), Expect = 3e-06
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
PP II K + VR + C A+G P P ++WR+ +G +S
Sbjct: 3 GAHPPEIIRK--PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSR 53
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 57.9 bits (140), Expect = 2e-11
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN---VITQNP-- 78
+ + A L C N + + V W + + ++ + +
Sbjct: 1 MLKIQAYFNETADLPCQFANSQNQSLSEL--VVFWQDQENLVLNEVYLGKEKFDSVHSKY 58
Query: 79 --RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLT 118
R S + W L + N+Q D+G Y C ++ +
Sbjct: 59 MGRTSFDSDS---WTLRLHNLQIKDKGLYQCIIHHKKPTGMI 97
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 60.3 bits (146), Expect = 2e-11
Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 26 NVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHN--VITQNPRI 80
+ D + + ++ + + +V W HN I + R+
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW-----------SHNGSAIRYSDRV 50
Query: 81 SLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWY 140
+ W L I +D+G Y+ ++ + + ++ L+ + E+
Sbjct: 51 KTGVTGEQIW-LQINEPTPNDKGKYVMEL-FDGKTGHQ----KTVDLSGQAYDEAYA--- 101
Query: 141 MCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
+ R +Q + ++ + ++E + L C G P P V W +
Sbjct: 102 ------EFQRLKQAAIAEKNRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLK- 153
Query: 201 DGANLSYNGDTELL 214
+ L+ L
Sbjct: 154 NEKALAQTDHCNLK 167
Score = 51.4 bits (123), Expect = 3e-08
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVD 62
+ + ++ VT+ G+ L C V G +V+W++ +
Sbjct: 106 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW----------GDPPPEVSWLKNE 155
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ Q +L + R+ + I V +D G Y V N
Sbjct: 156 KA---------LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV-KNK 196
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 59.9 bits (145), Expect = 2e-11
Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 57/212 (26%)
Query: 8 PVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
P++ +S P E ++ V A L C V+
Sbjct: 2 PLAGQYQS--PRIIEHPTDLVVKKNEPATLNCKVEG------------------------ 35
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFL 127
P ++ WF + + V +++ + Q +L +
Sbjct: 36 ---------KPEPTIE------WFKDGEPVSTNEKKSHRVQFKDG---ALFFY------R 71
Query: 128 NIKNVQESDRGWYMCQVNTDP--MRSRQGYLQV-VVPPSIIDKDTSTDLVVREQANVTLN 184
++ +E D G Y C SR LQ+ V+ + T V + L
Sbjct: 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT--RVAKGETALLE 129
Query: 185 C-KAQGYPEPYVMWRREDGANLSYNGDTELLT 215
C +G PEP ++W + DG L
Sbjct: 130 CGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGA 160
Score = 50.6 bits (121), Expect = 5e-08
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI 74
L F + V G ALL C KG + W D + +
Sbjct: 106 VLRDDFRVEPKDTRVAKGETALLECGP--PKGIPEPTLIWIK-----DGVPLDDLKAMSF 158
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R+ + + L I NV+ D G Y C N
Sbjct: 159 GASSRVRIVDGGN----LLISNVEPIDEGNYKCIA-QNL 192
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 60.3 bits (146), Expect = 3e-11
Identities = 23/187 (12%), Positives = 58/187 (31%), Gaps = 28/187 (14%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
+ D + + ++ + + +V W + I
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA---------I 149
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ R+ + W L I +D+G Y+ ++ + + ++ L+ + E
Sbjct: 150 RYSDRVKTGVTGEQIW-LQINEPTPNDKGKYVMEL-FDGKTGHQ----KTVDLSGQAYDE 203
Query: 135 SDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY 194
+ + R +Q + ++ + ++E + L C G P P
Sbjct: 204 A---------YAEFQRLKQAAIAEKNRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 195 VMWRRED 201
V W + +
Sbjct: 254 VSWLKNE 260
Score = 51.1 bits (122), Expect = 5e-08
Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 68/208 (32%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
PHF E + VT + LL C V N+K +
Sbjct: 8 PHFVEY-LSWEVTGECNVLLKCKVANIK------------------------------KE 36
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
I W+ + + + ++ L I + D
Sbjct: 37 THIV--------WYKDEREISVDEK------------HDFKDGICT---LLITEFSKKDA 73
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG------- 189
G Y + + + L ++ + + ++ + A+G
Sbjct: 74 GIYEVILKDDRGKDKSRLKLVDEAFKELMME--VCKKIALSATDLKIQSTAEGIQLYSFV 131
Query: 190 ---YPEPYVMWRREDGANLSYNGDTELL 214
+ V W +G+ + Y+ +
Sbjct: 132 TYYVEDLKVNWSH-NGSAIRYSDRVKTG 158
Score = 47.6 bits (113), Expect = 9e-07
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 21/110 (19%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
+ + ++ VT+ G+ L C V G + W
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSW----------- 256
Query: 66 ILSIHHN--VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
N + + +L + R+ + I V +D G Y V N
Sbjct: 257 ----LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV-KNK 301
Score = 40.3 bits (94), Expect = 2e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYVMWRREDGANLSYNGDTEL 213
+ P ++ V + NV L CK E +++W + D +S + +
Sbjct: 2 IDPFTGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDF 56
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 60.8 bits (146), Expect = 4e-11
Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 10/176 (5%)
Query: 39 CVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQ 98
C + QV + +T + + + + + +
Sbjct: 202 CQAGDDSNSNKKNADLQVLKPEPELVY--EDLRGSVTFHCALGPEVANVAKFLCRQSSGE 259
Query: 99 ESDRGWY---MCQVNTNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTDPMRSRQG 154
D RI L D F + I +++ D G Y+C ++D
Sbjct: 260 NCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGS 319
Query: 155 YLQVV---VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVM-WRREDGANLS 206
+Q V + T + ++V + C + W +GA
Sbjct: 320 PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNG 375
Score = 54.2 bits (129), Expect = 7e-09
Identities = 30/187 (16%), Positives = 51/187 (27%), Gaps = 17/187 (9%)
Query: 39 CVVDNLKG---FKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWF---L 92
C + F Q + DT+ +T N R +
Sbjct: 92 CGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI 151
Query: 93 NIKNVQESDRGWYMCQVNTNPRISLTYND--HRSWFLNIKNVQESDRGWYMCQV-NTDPM 149
+ V D Y+ N RI L + + I ++ SD G Y+CQ +
Sbjct: 152 GLYPVLVIDSSGYV-NPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS 210
Query: 150 RSRQGYLQVVVPPSIIDKDTSTDLV-------VREQANVTLNCKAQGYPEPYVMWRREDG 202
+ LQV+ P + + V C+ V+
Sbjct: 211 NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGK 270
Query: 203 ANLSYNG 209
++ G
Sbjct: 271 RAPAFEG 277
Score = 51.9 bits (123), Expect = 4e-08
Identities = 23/189 (12%), Positives = 51/189 (26%), Gaps = 15/189 (7%)
Query: 39 CVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNV-ITQNPRISLT------YNDHRSWF 91
C + + + TI V +++ + ++
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Query: 92 LNIKNVQESDRGWYM-----CQVNTNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVN 145
+ Q + + R+SL F + + + D G+Y C N
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426
Query: 146 TDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT--LNCKAQGYPEPYVMWRREDGA 203
D + ++++ + + V+ E V CK Y + + W
Sbjct: 427 GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486
Query: 204 NLSYNGDTE 212
L +
Sbjct: 487 ALPSQDEGP 495
Score = 49.6 bits (117), Expect = 2e-07
Identities = 28/189 (14%), Positives = 47/189 (24%), Gaps = 39/189 (20%)
Query: 26 NVTVTVGRDALLACVVDNLKGFKGLRIGW-QVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V G + C + R W + I S + R +LT
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
F +NI + + D G Y C +
Sbjct: 69 FPENGTF----------------------------------VVNIAQLSQDDSGRYKCGL 94
Query: 145 -NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYV-MWRREDG 202
S L+V P ++ + + V VT+NC + ++ G
Sbjct: 95 GINSRGLSFDVSLEVSQGPGLL--NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIG 152
Query: 203 ANLSYNGDT 211
D+
Sbjct: 153 LYPVLVIDS 161
Score = 48.1 bits (113), Expect = 8e-07
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
+ + NVT +G + C F W W Q + S
Sbjct: 436 EIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP--CKFSSYEKYW-CKWNNTGCQALPSQD 492
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLT 118
+ + R L + V +D GWY C V T
Sbjct: 493 E---GPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537
Score = 44.6 bits (104), Expect = 1e-05
Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 13/165 (7%)
Query: 39 CVVDNLKGFK---GLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIK 95
C+ + ++ ++I ++V + + + + W
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482
Query: 96 NVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV--NTDPMRSRQ 153
++ + + R L + V +D GWY C V +
Sbjct: 483 TGCQALPSQD---EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Query: 154 GYLQVVVPPSIIDKDTSTDLVVREQANVTLN-----CKAQGYPEP 193
Y+ V + +D S L+ + + +P
Sbjct: 540 VYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 58.9 bits (142), Expect = 5e-11
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWF----LNIKNVQESDRGWYMCQV 144
+W+ + + ++ N N Y+ + L + + D G Y +
Sbjct: 32 AWYKGNTTAIDKEIARFVPNSNMN-FTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM 90
Query: 145 NTDPMRSRQGYLQVVVPPS-IIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203
+ R Q ++ V T+ V+E +VTL C + + W +
Sbjct: 91 TDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLF-NSQ 148
Query: 204 NLSYNG 209
+L
Sbjct: 149 SLQLTE 154
Score = 37.3 bits (86), Expect = 0.001
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NT- 146
W N +++Q ++R ++L+ N+ L I ++ D G Y C++ N
Sbjct: 142 QWLFNSQSLQLTER------------MTLSQNNS---ILRIDPIKREDAGEYQCEISNPV 186
Query: 147 DPMRSRQGYLQVVVPPSII 165
RS L ++ P
Sbjct: 187 SVRRSNSIKLDIIFDPHHH 205
Score = 35.4 bits (81), Expect = 0.008
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 21/105 (20%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
V + + N TV L C+ +++ I W
Sbjct: 102 VRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG----ANIQW-------------L 144
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + R++L+ N+ L I ++ D G Y C++ +NP
Sbjct: 145 FNSQSLQLTERMTLSQNNS---ILRIDPIKREDAGEYQCEI-SNP 185
Score = 27.7 bits (61), Expect = 2.2
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207
+ V E NV L W + + +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDK 43
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 59.2 bits (143), Expect = 8e-11
Identities = 35/222 (15%), Positives = 50/222 (22%), Gaps = 75/222 (33%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
P V+V L C V +L G W N + T
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPG------SSSTQWFL----------------NGTATQTS 46
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPR-ISLTYNDHRSWF----------------- 126
I + +D G Y CQ + R + HR W
Sbjct: 47 TPS----YRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLAL 102
Query: 127 ------------------------------LNIKNVQESDRGWYMCQV-NTDPMRSRQGY 155
L I S G Y C S
Sbjct: 103 RCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ V + S + E VTL+C+ + + +
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQ 204
Score = 31.4 bits (71), Expect = 0.17
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 20/101 (19%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
+V E + G L+C L + ++
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ--RPGLQLYFSFYMGS-------- 213
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ R + S I + D G Y C+ T
Sbjct: 214 -----KTLRGR-----NTSSEYQILTARREDSGLYWCEAAT 244
Score = 29.9 bits (67), Expect = 0.61
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 122 HRSWFLNIKNVQESDRGWYMCQVNTD--PMRSRQGYLQVVV 160
+ S I + D G Y C+ T+ + R L++ V
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 56.0 bits (135), Expect = 1e-10
Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 31/140 (22%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V +G L C + Q+ W R +++ H T
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVS--QLTWARHGESGSMAVFHQ----------TQ 55
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
ES R + + R+ L + ++ D G Y C
Sbjct: 56 GPS---------YSESKRL--------EFVAARLGAELRNASLRMFGLRVEDEGNYTCLF 98
Query: 145 NTDPMRSRQGY--LQVVVPP 162
T P SR L+V+ P
Sbjct: 99 VTFPQGSRSVDIWLRVLAKP 118
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 57.6 bits (139), Expect = 1e-10
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 107 CQVNTNPRISLT--YNDHRSW-----FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV 159
CQ +P T +++ I D G Y CQ S L+V
Sbjct: 29 CQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLST-LSDPVQLEVH 87
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
+ ++ + V +E+ + L C + + + ++G Y
Sbjct: 88 IGWLLL---QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFY 140
Score = 27.9 bits (62), Expect = 2.2
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 175 VREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
V E+ +VTL C+ PE + + +S +
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS 55
Score = 26.0 bits (57), Expect = 8.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 87 HRSWFLNIKNVQESDRGWYMCQV 109
H + I D G Y C+
Sbjct: 134 HHNSDFYIPKATLKDSGSYFCRG 156
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 58.5 bits (141), Expect = 2e-10
Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 43/203 (21%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
V E+ +T+ +L C +L F + ++ W + D+ + +
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCP--DLSEFTRDKTDVKIQWYK-DSLLLDKDN 170
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIK 130
++ L + +V D G+Y C + T YN RS L IK
Sbjct: 171 EKFLSVRGTTHLL----------VHDVALEDAGYYRCVL-TFAHEGQQYNITRSIELRIK 219
Query: 131 NVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA--- 187
+E P II + + +T+ CK
Sbjct: 220 KKKEE------------------------TIPVIISP--LKTISASLGSRLTIPCKVFLG 253
Query: 188 QGYPEPYVMWRREDGANLSYNGD 210
G P ++W + ++
Sbjct: 254 TGTPLTTMLWWTANDTHIESAYP 276
Score = 51.6 bits (123), Expect = 4e-08
Identities = 20/201 (9%), Positives = 44/201 (21%), Gaps = 50/201 (24%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
P + + S G L C + + + W + D+
Sbjct: 8 PAAHTGAARSC-RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSAR 66
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSW 125
+ +L + + D G Y+C N
Sbjct: 67 TVPGEEETRMWAQDGALW----------LLPALQEDSGTYVCTTR---------NASYCD 107
Query: 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
++I+ L+V S ++ + L C
Sbjct: 108 KMSIE-------------------------LRVFENTDAFLPFISYPQILTLSTSGVLVC 142
Query: 186 -----KAQGYPEPYVMWRRED 201
+ + + W ++
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDS 163
Score = 50.5 bits (120), Expect = 8e-08
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 9 VSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
+ E +P P+ ++ ++G + C V G + W W DT +
Sbjct: 218 IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW---WTANDTHIESA 274
Query: 69 IHHNVITQNPRISLTYNDHRSWF--LNIKNVQESDRGW-YMCQV 109
+T+ PR + N+ L V D + C V
Sbjct: 275 YPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV 318
Score = 28.1 bits (62), Expect = 2.2
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 8/48 (16%)
Query: 172 DLVVREQANVTLNCK-------AQGYPEPYVMWRREDGANLSYNGDTE 212
E V L C A P + W + + + + G+ E
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK-NDSARTVPGEEE 73
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 58.2 bits (140), Expect = 2e-10
Identities = 26/199 (13%), Positives = 46/199 (23%), Gaps = 58/199 (29%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
+E + + A+ I + V D L C +
Sbjct: 98 ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN---------------------- 135
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKN 131
N L W+ + K + + + L + N
Sbjct: 136 -----NELPKLQ------WYKDCKPLLLDNI----------------HFSGVKDRLIVMN 168
Query: 132 VQESDRGWYMCQV-----NTDPMRSRQGYLQVVVPPS----IIDKDTSTDLVVREQANVT 182
V E RG Y C +R + +I + + V + +
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQ 228
Query: 183 LNCKAQGYPEPYVMWRRED 201
L C G W+
Sbjct: 229 LICNVTGQLSDIAYWKWNG 247
Score = 46.3 bits (109), Expect = 2e-06
Identities = 23/186 (12%), Positives = 44/186 (23%), Gaps = 54/186 (29%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
E + + + C ++ + W + D++T +S Q RI
Sbjct: 10 EEKIILVSSANEIDVRPCPLN------PNEHKGTITWYKDDSKTPVST-----EQASRIH 58
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYM 141
+ + L + D G Y C V N +Y
Sbjct: 59 Q--HKEK---LWFVPAKVEDSGHYYCVV-RNS----SYCLRIKISAKF------------ 96
Query: 142 CQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC------KAQGYPEPYV 195
P + + + L C K + P +
Sbjct: 97 ---------------VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKL 141
Query: 196 MWRRED 201
W ++
Sbjct: 142 QWYKDC 147
Score = 38.6 bits (89), Expect = 8e-04
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 9 VSSVSESLMPHFAEPIPN-VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
++ P P + V +G L C V G W+ +D +
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPV 256
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESD-RGWYMCQV 109
+NP LNI ++ + + C
Sbjct: 257 LGEDYYSVENPANKRRSTLITV--LNISEIESRFYKHPFTCFA 297
Score = 32.4 bits (73), Expect = 0.081
Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY-VMWRREDG 202
+ +++ LV C + W ++D
Sbjct: 1 LEADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDS 45
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 57.1 bits (138), Expect = 2e-10
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 48/199 (24%)
Query: 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNV 73
E P E ++ V+ G A L C + G I W RV+T H +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAE---GRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 74 ITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ 133
+ + SL + + D G Y+C V
Sbjct: 63 LLPSG--SLFFLR-----IVHGRKSRPDEGVYVC------------------------VA 91
Query: 134 ESDRGWYMCQVNTDPMRSRQGYLQV-VVPPSIIDKDTSTDLVVREQANVTLNCKA-QGYP 191
+ G S L+V ++ +D++V + C+ +G+P
Sbjct: 92 RNYLGE---------AVSHDASLEVAILRDDFRQN--PSDVMVAVGEPAVMECQPPRGHP 140
Query: 192 EPYVMWRREDGANLSYNGD 210
EP + W++ DG+ L +
Sbjct: 141 EPTISWKK-DGSPLDDKDE 158
Score = 47.9 bits (114), Expect = 4e-07
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 56/155 (36%)
Query: 15 SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI 74
L F + +V V VG A++ C
Sbjct: 109 ILRDDFRQNPSDVMVAVGEPAVMEC--------------------------------QPP 136
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+P +++ W + + + D RI++ L I ++
Sbjct: 137 RGHPEPTIS------WKKDGSPLDDKDE-----------RITIRGGK-----LMITYTRK 174
Query: 135 SDRGWYMCQV-NT-DPMRSRQGYLQVVVPPSIIDK 167
SD G Y+C N S L V+ PS +
Sbjct: 175 SDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209
Score = 44.8 bits (106), Expect = 4e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
Q PP I++ +DL+V + TLNCKA+G P P + W + G + + D
Sbjct: 4 RQEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKD 55
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 55.6 bits (134), Expect = 4e-10
Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 107 CQVNTNPRISLTYNDHRSWFLN------------IKNVQESDRGWYMCQVNTDPMRSRQG 154
CQ +P + T WF N I +D G Y CQ S
Sbjct: 29 CQGAYSPEDNSTQ-----WFHNESLISSQASSYFIDAATVNDSGEYRCQT-NLSTLSDPV 82
Query: 155 YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGANLSYNGDTEL 213
L+V + ++ + V +E+ + L C + V + + +G + Y
Sbjct: 83 QLEVHIGWLLL---QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRKYFHHNSD 138
Query: 214 LT 215
Sbjct: 139 FH 140
Score = 28.7 bits (64), Expect = 1.1
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 92 LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQES 135
+I D G Y C+ + S +NI + ++
Sbjct: 139 FHIPKATLKDSGSYFCRGLVG------SKNVSSETVNI-TITQA 175
Score = 27.5 bits (61), Expect = 2.9
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 175 VREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
V E+ +VTL C+ PE + + +S +
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS 55
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 55.2 bits (133), Expect = 5e-10
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 22/120 (18%)
Query: 107 CQVNTNPRISLTYNDHRSWF------------LNIKNVQESDRGWYMCQVNTDPMRSRQG 154
CQ +P WF +D G Y CQ S
Sbjct: 26 CQGARSPESDSI-----QWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQT-GQTSLSDPV 79
Query: 155 YLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGANLSYNGDTEL 213
+L V+ ++ + L +E + L C + P V + + + + D
Sbjct: 80 HLTVLFEWLVL---QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTF 136
Score = 27.9 bits (62), Expect = 2.1
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPY-VMWRREDGANLSYNGDTELLT 215
PP + K + V ++ +VTL C+ PE + W +G + +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQPSYRF 56
Score = 25.5 bits (56), Expect = 9.5
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 31/110 (28%)
Query: 24 IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLT 83
P++ G +L C K +++ + N +
Sbjct: 92 TPHLEFQEGETIMLRCHSW--KDKPLVKVTF---------------FQN----GKSQKFS 130
Query: 84 YNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ 133
+ D +I S G Y C S + I VQ
Sbjct: 131 HLDPT---FSIPQANHSHSGDYHCTG-NIGYTL-----FSSKPVTI-TVQ 170
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 56.0 bits (134), Expect = 1e-09
Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 44/194 (22%)
Query: 12 VSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
+S + + + C N+ G+ + + W I + ++
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITC--PNVDGYFPSSVKPTITWYM-GCYKIQNFNN 171
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKN 131
+ L+ S+ G Y C V T P T++ R+ +
Sbjct: 172 VI-------------PEGMNLSFLIALISNNGNYTCVV-TYPENGRTFHLTRTLTV---K 214
Query: 132 VQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKA---- 187
V S + VPP I + + + C
Sbjct: 215 VVGSPKNA--------------------VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 188 QGYPEPYVMWRRED 201
V W +
Sbjct: 255 LMDSRNEVWWTIDG 268
Score = 52.6 bits (125), Expect = 2e-08
Identities = 23/188 (12%), Positives = 42/188 (22%), Gaps = 42/188 (22%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRI----GWQVAWVRVDTQTILSIHHNVITQN 77
+ + + V A + C + G + W L N
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
RIS L + +D G Y C + N TY ++ L +
Sbjct: 72 NRISK-----EKDVLWFRPTLLNDTGNYTCML-RNT----TYCSKVAFPLEVVQKDS--- 118
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVT---LNCKAQGYPEPY 194
S + + +T ++ +P
Sbjct: 119 ----------------------CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT 156
Query: 195 VMWRREDG 202
+ W
Sbjct: 157 ITWYMGCY 164
Score = 41.4 bits (96), Expect = 1e-04
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 9 VSSVSESLMPHFAEPIPN---VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
V ++ +P + G + L+ C V + +V W +
Sbjct: 215 VVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV---YFSFLMDSRNEVWWTIDGKKP 271
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGW-YMCQV 109
I ++ S T ++ R+ L+IK V D Y+C
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316
Score = 36.0 bits (82), Expect = 0.006
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGW-YMCQV- 144
W ++ K + +N + S T ++ R+ L+IK V D Y+C
Sbjct: 261 EVWWTIDGKKPDDITIDVT---INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 145 NTDPMRSRQGYLQVVVPP 162
+ ++ ++ VP
Sbjct: 318 SAKGEVAKAAKVKQKVPA 335
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 53.1 bits (127), Expect = 2e-09
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 17/136 (12%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
P V +G L C + + V W R D + H NV +P++ ++
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYIS---LVTWQRPDAP---ANHQNVAAFHPKMGPSF 63
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+ T + + L + + D G Y C+
Sbjct: 64 PSPKPG-----------SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEF 112
Query: 145 NTDPMRSRQGYLQVVV 160
T P S +G + V
Sbjct: 113 ATFPKGSVRGMTWLRV 128
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 53.9 bits (129), Expect = 2e-09
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
K + G Y C +P +Q+ PP + + + E L CK
Sbjct: 51 TEFKVDSDDQWGEYSCVFLPEP--MGTANIQLHGPPRVKA--VKSSEHINEGETAMLVCK 106
Query: 187 AQGYPEP-YVMWRREDGAN 204
++ P W + +
Sbjct: 107 SESVPPVTDWAWYKITDSE 125
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + + G A+L C + + AW ++ ++ +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSE------SVPPVTDWAWYKITDSEDKALMNG---SE 134
Query: 78 PRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQVNTNP 113
R ++ + L+I+N+ E+D G Y C T+
Sbjct: 135 SRFFVS-SSQGRSELHIENLNMEADPGQYRCNG-TSS 169
Score = 28.8 bits (64), Expect = 1.00
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 110 NTNPRISLTYNDHRSWFLNIKNVQ-ESDRGWYMCQV 144
+ R ++ + L+I+N+ E+D G Y C
Sbjct: 132 GSESRFFVS-SSQGRSELHIENLNMEADPGQYRCNG 166
Score = 27.3 bits (60), Expect = 3.4
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 2/36 (5%)
Query: 168 DTSTDLVVREQANVTLNCKAQGYPEP--YVMWRRED 201
T V + + L C W +
Sbjct: 3 GTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGG 38
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 53.8 bits (129), Expect = 3e-09
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 38/182 (20%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
V +G L + + W+ +T L+ T++P I +
Sbjct: 8 VNGILGESVTLPLEFPAGEKVN------FITWLFNETS--LAFIVPHETKSPEIHV---- 55
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 146
TNP+ N +S+ L + N++ D G Y Q++T
Sbjct: 56 ------------------------TNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQIST 91
Query: 147 DPMRSRQGY-LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGAN 204
Y L+++ I + L + L C + W
Sbjct: 92 KTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL 151
Query: 205 LS 206
S
Sbjct: 152 SS 153
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 51.6 bits (124), Expect = 3e-09
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
PEP + + F++ +V V G A+ + +V W R +
Sbjct: 1 PEPG----KKPVSAFSKKPRSVEVAAGSPAVFEAETERAGV--------KVRWQRGGSD- 47
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
I+ + + L R L ++ V +D+G Y +
Sbjct: 48 --------ISASNKYGLATEGTRHT-LTVREVGPADQGSYAVIAGS 84
Score = 29.2 bits (66), Expect = 0.34
Identities = 4/30 (13%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ V + + + V W+R
Sbjct: 17 SVEVAAGSPAVFEAETER-AGVKVRWQRGG 45
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 52.1 bits (125), Expect = 3e-09
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
Q PP I++ +DL+V + TLNCKA+G P P + W + G + + D
Sbjct: 4 RQEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKD 55
Score = 36.3 bits (84), Expect = 0.001
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSI 69
S E P E ++ V+ G A L C + G I W RV+T
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAE---GRPTPTIEWYKGGERVETDKDDPR 58
Query: 70 HHNVITQNPRISLTYNDHRSWFLNIKN--VQESDRGWYMCQ 108
H ++ + SL +FL I + D G Y+C
Sbjct: 59 SHRMLLPSG--SL-------FFLRIVHGRKSRPDEGVYVCV 90
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 53.3 bits (128), Expect = 4e-09
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 118 TYNDHRSWFLNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVVPPSIIDKDTSTDLV 174
TY ++ L IK+++ D+ Y + + + L++ S +
Sbjct: 59 TYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------SKPKI 111
Query: 175 VREQANVTLNCKAQGYPEPYVMWRR------EDGANLSYNGDTEL 213
N TL C+ +P + + +++ T L
Sbjct: 112 SWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL 156
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 54.1 bits (129), Expect = 6e-09
Identities = 27/257 (10%), Positives = 48/257 (18%), Gaps = 81/257 (31%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
N +G C ++ D +++ T+ P ++
Sbjct: 35 GTMNDMAALGEPFSAKCPPIE---------DSLLSHRYNDKDNVVNWEKIGKTRRP-LNR 84
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMC----------------QVNTNPRI----------- 115
+ W N Y+C + P
Sbjct: 85 RVKNGDLWIANY--TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD 142
Query: 116 ------------------------------SLTYNDHRSWFLNIKNVQESDRGWYMCQV- 144
T L I N + D G Y C V
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 145 NTDPMRSRQGYLQVVVPPSIIDKD-------TSTDLVVREQANVTLNCKAQGYPEPY--- 194
D + ++I + V + C A
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV 262
Query: 195 -VMWRREDGANLSYNGD 210
+ W G + +
Sbjct: 263 LIDWENPSGWIIGLDFG 279
Score = 40.2 bits (93), Expect = 3e-04
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 8 PVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
++ + P + VT+G A + C L + W + I+
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTA---VSTSLLVDDVLIDWEN-PSGWII 274
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGW-YMCQVNT 111
+ V + L +NV E G Y C+ +
Sbjct: 275 GLDFGVYSILTSSGGITEAT----LYFENVTEEYIGNTYTCRGHN 315
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 50.8 bits (122), Expect = 7e-09
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 18/101 (17%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
S S F E + N+ V A+ C ++ V W +
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAA--------TVTWRK---------G 44
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ + + + L I ++++D Y C +
Sbjct: 45 LLELRASGKHQPSQEGLTL-RLTISALEKADSDTYTCDIGQ 84
Score = 31.5 bits (72), Expect = 0.051
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
++ T+L V E+ CK +P V WR+ L +G +
Sbjct: 8 ANCFTEE--LTNLQVEEKGTAVFTCKT-EHPAATVTWRK-GLLELRASGKHQPS 57
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 50.3 bits (121), Expect = 1e-08
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P E I + TV G DA V +G + W + + I
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRV----------VGKPDPECEWYKNGVK---------I 46
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ RI + + L I++V D M + N
Sbjct: 47 ERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA-INI 84
Score = 39.6 bits (93), Expect = 7e-05
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
P I ++ V + ++ + G P+P W + +G + +
Sbjct: 5 APKIFER--IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYW 56
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 50.5 bits (121), Expect = 1e-08
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P F + V G L C + ++ W R + + +
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQIS----------AIPPPKLFWKR-NNEMVQF------ 58
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
RISL ++ L IK+V + D GWY
Sbjct: 59 -NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
Score = 45.5 bits (108), Expect = 7e-07
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 151 SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ P I K V E +V L C+ P P + W+R + + +N D
Sbjct: 5 HHHHSHEHKRAPMFIYK--PQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNTD 61
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 50.5 bits (121), Expect = 1e-08
Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 54/154 (35%)
Query: 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNV 73
+ H E + +V V G A C +
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRI-------------------------------- 37
Query: 74 ITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ 133
+ + WFL+ + ++ + L ++ +
Sbjct: 38 -SPANYEPVH------WFLDKTPLHANEL------------NEIDAQPGGYHVLTLRQLA 78
Query: 134 ESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDK 167
D G + L+V PS+ +
Sbjct: 79 LKDSGTIYFEAGDQ---RASAALRVTEKPSVFSR 109
Score = 35.4 bits (82), Expect = 0.003
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
II+ D+ V+E ++ T C+ V W D L N E+
Sbjct: 13 RVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDA 64
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 51.0 bits (122), Expect = 2e-08
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 23/112 (20%)
Query: 5 FPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRV 61
F E V+ + P+F + I ++ V G A C V+ G+ +V W +
Sbjct: 29 FLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE----------GYPDPEVMWFKD 78
Query: 62 DTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
D + ++ + Y++ + L I V D Y C+ N
Sbjct: 79 DNP---------VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA-VNS 120
Score = 47.5 bits (113), Expect = 3e-07
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 128 NIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV------VPPSIIDKDTSTDLVVREQANV 181
+ + S +N + + + +L+ V V P D+ V E +
Sbjct: 3 GMSGRKASGSSPTSP-INANKVENEDAFLEEVAEEKPHVKPYFTKT--ILDMEVVEGSAA 59
Query: 182 TLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+CK +GYP+P VMW + D + + ++
Sbjct: 60 RFDCKVEGYPDPEVMWFK-DDNPVKESRHFQID 91
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 49.7 bits (119), Expect = 2e-08
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTI 66
SS S PHF + ++TV G+ + C V G ++W D + +
Sbjct: 2 SSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVS----------GLPTPDLSWQL-DGKPV 50
Query: 67 LSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ + ++ L I+ V D G Y C
Sbjct: 51 RP--------DSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
Score = 41.2 bits (97), Expect = 2e-05
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
P + DL V+E ++CK G P P + W+ DG + +
Sbjct: 8 FRPHFLQA--PGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSA 55
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.7 bits (119), Expect = 2e-08
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
S S F + + + G A L C + + V W +
Sbjct: 2 SSGSSGPARFTQDLKTKEASEGATATLQCELSKVA---------PVEWKKGPET------ 46
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ R SL + R L I ++ +D G Y C
Sbjct: 47 ---LRDGGRYSLKQDGTRC-ELQIHDLSVADAGEYSCMCGQ 83
Score = 28.5 bits (64), Expect = 0.69
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 5/54 (9%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
P E A TL C+ V W++ L G L
Sbjct: 8 PARFTQD--LKTKEASEGATATLQCELS--KVAPVEWKK-GPETLRDGGRYSLK 56
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 49.6 bits (119), Expect = 2e-08
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
F E + ++ V G A L CV+ ++ V W + NV+
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAA--------PVKWCYGN---------NVLRPG 51
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ SL L ++N++ D G Y C
Sbjct: 52 DKYSLRQEGAMLE-LVVRNLRPQDSGRYSCSFGD 84
Score = 33.1 bits (76), Expect = 0.014
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
P + DL V E TL C P V W +
Sbjct: 8 PVRFQEA--LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGN 45
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 48.8 bits (117), Expect = 3e-08
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 23/99 (23%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P F + + +V G+D +++ V G V+W+R + +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQ----------GEPKPVVSWLR---------NRQPV 46
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R + L I + D G+Y C+ N
Sbjct: 47 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA-VNE 84
Score = 41.9 bits (99), Expect = 1e-05
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
PP+ D VRE +V ++ + QG P+P V W R + + +
Sbjct: 4 APPTFKVS--LMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQR 51
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 48.9 bits (117), Expect = 3e-08
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ I ++TV A+ C V + K W + + + +
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSDEKV--------TGKWYKNGVE---------VRPS 51
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLT 118
RI++++ R L I +V+ D G Y +SL+
Sbjct: 52 KRITISH-VGRFHKLVIDDVRPEDEGDYTFVP-DGYALSLS 90
Score = 28.5 bits (64), Expect = 0.68
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 171 TDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
DL V+ C+ + W +
Sbjct: 16 ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNG 45
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 48.9 bits (117), Expect = 3e-08
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 16/99 (16%)
Query: 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN 72
S S + + + T G L C V V W + + + I
Sbjct: 3 SGSSGIMVTKQLEDTTAYCGERVELECEVSEDDA--------NVKWFK-NGEEI------ 47
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ R + + L I+ ++D Y
Sbjct: 48 IPGPKSRYRIRVEGKKH-ILIIEGATKADAAEYSVMTTG 85
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 50.3 bits (120), Expect = 3e-08
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 107 CQVNTNP---RISLTYNDHRSWF----LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVV 159
C N +N S LNI N + D G Y CQ S YL+V
Sbjct: 26 CNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQH-QQVNESEPVYLEVF 84
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGANLSYNGDTELLT 215
++ ++ VV E + L C + V++ + DG L Y + ++
Sbjct: 85 SDWLLL---QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKYWYENHNIS 137
Score = 29.5 bits (66), Expect = 0.52
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 33/135 (24%)
Query: 3 SYFPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62
EPV + + V G+ L C + ++ +
Sbjct: 73 VNESEPVY-LEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWR--NWDVYKVIY-------- 120
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDH 122
+ + + Y +H ++I N D G Y C ++ +
Sbjct: 121 -------YKD----GEALKYWYENHN---ISITNATVEDSGTYYCTG-KVWQLD-----Y 160
Query: 123 RSWFLNIKNVQESDR 137
S LNI V ++ R
Sbjct: 161 ESEPLNI-TVIKAPR 174
Score = 26.4 bits (58), Expect = 6.5
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDT 211
VP + + NVTL C + E +G+ +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS 52
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 49.2 bits (117), Expect = 4e-08
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQ--VAWVRVDTQTILSIH 70
S S F E TV VG D V + + + W + + S
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVK------AEDLLRKPTIKWFKGKWMDLASKA 56
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + ++ + I +++ G Y C+V T
Sbjct: 57 GKHLQLKETFERHSRVY-TFEMQIIKAKDNFAGNYRCEV-TYK 97
Score = 31.5 bits (71), Expect = 0.081
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 172 DLVVREQANVTLNCKAQGYP---EPYVMWRREDGANLS 206
V+ ++T K + +P + W + +L+
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA 53
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 48.9 bits (117), Expect = 4e-08
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 26/106 (24%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTIL 67
+V E + P + N T ++G ++C G Q+ W + +
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTAS----------GNPPPQIMWFKDN----- 48
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ ++ I L + L I+ V++ D G Y CQ +
Sbjct: 49 ----ETLVEDSGIVLKDGNRN---LTIRRVRKEDEGLYTCQA-CSV 86
Score = 46.9 bits (112), Expect = 2e-07
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 152 RQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
RQ + V P+I + ++ ++C A G P P +MW +++
Sbjct: 1 RQLTVLERVAPTITGN--LENQTTSIGESIEVSCTASGNPPPQIMWFKDN 48
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 48.5 bits (116), Expect = 4e-08
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 24/111 (21%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVD 62
P SS + P F V V G +A L CVV G V W +
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVL----------GEPPPVVVWEKGG 51
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
Q + + R+S + L + +D G Y+C+ N
Sbjct: 52 QQ---------LAASERLSFPADGAEH-GLLLTAALPTDAGVYVCRA-RNA 91
Score = 42.8 bits (101), Expect = 5e-06
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 148 PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSY 207
PM++ G PP + + V A L C G P P V+W + G L+
Sbjct: 2 PMKASSG--DQGSPPCFLRF--PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAA 56
Query: 208 NGDTELL 214
+
Sbjct: 57 SERLSFP 63
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 51.1 bits (122), Expect = 5e-08
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 43/185 (23%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P E + NV C K + +W + D +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDKMTPKS--------EFSWSK-DYV--------STEDS 46
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
PR+ + +++ + K++ D G Y C V T+ +
Sbjct: 47 PRLEVESKGNKT-KMTFKDLGMDDLGIYSCDV-TDTDGIASSY----------------- 87
Query: 138 GWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVM 196
+ R + P + + + + E+ V +A+ V
Sbjct: 88 ----LIDEEELKRLLALSHEHKFPTVPVKSE--LAVEILEKGQVRFWMQAEKLSGNAKVN 141
Query: 197 WRRED 201
+ +
Sbjct: 142 YIFNE 146
Score = 46.9 bits (111), Expect = 1e-06
Identities = 23/196 (11%), Positives = 59/196 (30%), Gaps = 35/196 (17%)
Query: 8 PVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
S + V + + L G +V ++ + +
Sbjct: 98 LALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA------KVNYIFNEKE--- 148
Query: 68 SIHHNVITQNPRISLTY-NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWF 126
I + P+ + + + ++ +Q+ D G Y Q+ + + + +H +
Sbjct: 149 ------IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDGKAT----NHSTVV 197
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L ++ ++ P ++ V + NV L CK
Sbjct: 198 LVGDVFKKL----------QKEAEFQRQEWIRKQGPHFVEY---LSWEVTGECNVLLKCK 244
Query: 187 AQGY-PEPYVMWRRED 201
E +++W +++
Sbjct: 245 VANIKKETHIVWYKDE 260
Score = 45.4 bits (107), Expect = 4e-06
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 24/111 (21%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
PHF E + VT + LL C V N+K K I W
Sbjct: 211 EFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIK--KETHIVW----------- 256
Query: 66 ILSIHHN--VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPR 114
+ + I+ + + L I + D G Y + + R
Sbjct: 257 ----YKDEREISVDEKHDFKDGICT---LLITEFSKKDAGIYEVIL-KDDR 299
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 48.5 bits (115), Expect = 5e-08
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPR 79
F + VTVG + V L V W + + S + +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAG----ASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 80 ISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + L+I + Q + G Y C+V +
Sbjct: 63 YDRASKVY-LFELHITDAQPAFTGSYRCEV-STK 94
Score = 28.8 bits (64), Expect = 0.59
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 172 DLVVREQANVTLNCKAQGYP---EPYVMWRREDGANLS 206
D V ++T + + G P V W + +LS
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS 50
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 48.2 bits (115), Expect = 6e-08
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 26/99 (26%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P + N T+ V ALL C G ++W++
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKAT----------GDPLPVISWLKEG--------FTFP 50
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++PR ++ L IKN++ SD G Y C T+
Sbjct: 51 GRDPRATIQEQG----TLQIKNLRISDTGTYTCVA-TSS 84
Score = 45.8 bits (109), Expect = 4e-07
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
PP I+ + + L CKA G P P + W +E + +
Sbjct: 8 PPIILQG--PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ 59
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 48.6 bits (115), Expect = 6e-08
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVR---VDT 63
SS +E F + +V+V G+DA++ V+ K L + W + ++
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNG----KELPDKPTIKWFKGKWLEL 57
Query: 64 QTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTN 112
+ + + S Y + L+I V DRG+Y +V
Sbjct: 58 GSKSGARFSFKESHNSASNVY----TVELHIGKVVLGDRGYYRLEVKAK 102
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.5 bits (116), Expect = 6e-08
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 19/94 (20%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
F E + N T G A+L C + + V W + + +
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMA---------PVEWWK-GHE--------TLRDG 61
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
R SL D L I+ + D G Y+C
Sbjct: 62 DRHSLRQ-DGARCELQIRGLVAEDAGEYLCMCGK 94
Score = 33.1 bits (76), Expect = 0.020
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 155 YLQVV-VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
L V +P + + E A L C+ V W + L L
Sbjct: 12 MLTVRALPIKFTEG--LRNEEATEGATAVLRCELSKMAP--VEWWK-GHETLRDGDRHSL 66
Query: 214 L 214
Sbjct: 67 R 67
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 49.6 bits (118), Expect = 7e-08
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
W V E R S + + L IKN+ D G Y V +T+
Sbjct: 31 RWERGSTLVAEFKRK------MKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 84
Query: 148 PMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
R L + + + S ++ E +N TL C+ + + +
Sbjct: 85 GTRILNKALDLRILEMV-----SKPMIYWECSNATLTCEVLEGTDVELKLYQ 131
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 47.7 bits (114), Expect = 7e-08
Identities = 21/101 (20%), Positives = 28/101 (27%), Gaps = 28/101 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHN-- 72
P + + TV+ A A G W +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKAT----------GEPRPTAIW-----------TKDGK 45
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
ITQ + L+ + FL I SD G Y C V N
Sbjct: 46 AITQGGKYKLSEDKGGF-FLEIHKTDTSDSGLYTCTV-KNS 84
Score = 43.0 bits (102), Expect = 4e-06
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+ P I+ D V + KA G P P +W + DG ++ G +L
Sbjct: 3 ISSKPVIVTG--LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLS 56
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 47.7 bits (114), Expect = 7e-08
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
S S P+ + V VG +A V QV W++ + +
Sbjct: 2 SSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGA--------QVMWMK-NGVEL---- 48
Query: 71 HNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
+ R + R L +V + DRG Y N
Sbjct: 49 TREDSFKARYRFKKDGKRHI-LIFSDVVQEDRGRYQVITN 87
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 49.2 bits (117), Expect = 1e-07
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDP 148
W V E + + + R+ Y D S L I N+ SD Y + +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRV---YLDTVSGSLTIYNLTSSDEDEYEMESP-NI 82
Query: 149 MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ + +L V+ S ++ E +N TL C+ + +
Sbjct: 83 TDTMKFFLYVLEMV-------SKPMIYWECSNATLTCEVLEGTDVELKL 124
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.8 bits (114), Expect = 1e-07
Identities = 27/163 (16%), Positives = 41/163 (25%), Gaps = 55/163 (33%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + N TV V +L+CV G +
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVAT---G------------------------------S 35
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
P ++ W + V D RI N L I+ + D
Sbjct: 36 PVPTIL------WRKDGVLVSTQD-----------SRIKQLENGV----LQIRYAKLGDT 74
Query: 138 GWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQA 179
G Y C + Y++V + TD + A
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
Score = 45.1 bits (107), Expect = 9e-07
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
PP I + V L+C A G P P ++WR+ DG +S
Sbjct: 8 PPVIRQG--PVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDS 54
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 47.3 bits (113), Expect = 1e-07
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 22/99 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P ++++ G+ +AC G +V W + I S
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFT----------GEPTPEVTWSC-GGRKIHS------ 48
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R + D + L I +VQ+ D G Y + N
Sbjct: 49 QEQGRFHIENTDDLT-TLIIMDVQKQDGGLYTLSL-GNE 85
Score = 43.5 bits (103), Expect = 3e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+PP I + D+ + E +T+ C G P P V W
Sbjct: 4 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSCGG 43
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 49.2 bits (117), Expect = 1e-07
Identities = 22/186 (11%), Positives = 56/186 (30%), Gaps = 33/186 (17%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+ F + V + + L G +V ++ + + I
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNA------KVNYIF-NEKEIFE------GP 48
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
++ + N + ++ +Q+ D G Y Q+ + + + V +
Sbjct: 49 KYKMHIDRNTGIIE-MFMEKLQDEDEGTYTFQLQ---------DGKATNHSTVVLVGDVF 98
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYV 195
+ ++ P ++ V + NV L CK E ++
Sbjct: 99 K------KLQKEAEFQRQEWIRKQGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHI 149
Query: 196 MWRRED 201
+W +++
Sbjct: 150 VWYKDE 155
Score = 46.5 bits (110), Expect = 1e-06
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
PHF E + VT + LL C V ++ + W + + +
Sbjct: 106 EFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKV------ANIKKETHIVWYKDERE- 157
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPR 114
I+ + + L I + D G Y + + R
Sbjct: 158 --------ISVDEKHDFKDGICT---LLITEFSKKDAGIYEVIL-KDDR 194
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 1e-07
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 26/95 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHN-- 72
P F + N+++ GR + V G V+W + N
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVS----------GLPAPDVSW-----------YLNGR 44
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ + + ++ L + V+ SD G Y C
Sbjct: 45 TVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+ PP I ++ + E ++ K G P P V W +G + + +++
Sbjct: 3 MGPPRFIQVPE--NMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMI 55
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 19/98 (19%)
Query: 13 SESLMPHFAEPIP-NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHH 71
S S FA+ + V G + + K +V W + + Q
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVELADPKL--------EVKWYK-NGQ------- 46
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
I + + + + L I N Q +D Y
Sbjct: 47 -EIRPSTKYIFEHKGCQR-ILFINNCQMTDDSEYYVTA 82
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 47.3 bits (113), Expect = 1e-07
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 24/106 (22%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTIL 67
S +L ++TV G A +C D G V W+R
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTD----------GEPVPTVTWLRKG----- 52
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
V++ + R +T ++S I +VQ SD G Y V N
Sbjct: 53 ----QVLSTSARHQVTTTKYKS-TFEISSVQASDEGNYSVVV-ENS 92
Score = 44.7 bits (106), Expect = 1e-06
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
+ + I+ K + V E + +C G P P V W R G LS + ++ T
Sbjct: 9 SKTTLAARILTK--PRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTT 65
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 2e-07
Identities = 26/151 (17%), Positives = 40/151 (26%), Gaps = 55/151 (36%)
Query: 13 SESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN 72
S S P+ + TV +G++ L C +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEI------------------------------- 31
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNV 132
++N W N VQESD R+ + L I N
Sbjct: 32 --SENIPG--------KWTKNGLPVQESD------------RLKVVQKGRIH-KLVIANA 68
Query: 133 QESDRGWYMCQVNTDPMRSRQGYLQVVVPPS 163
D G Y+ + + V+ PS
Sbjct: 69 LTEDEGDYVF-APDAYNVTLPAKVHVISGPS 98
Score = 28.5 bits (64), Expect = 0.67
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
I+ TD V + L C+ W +
Sbjct: 7 GLKILTP--LTDQTVNLGKEICLKCEISENIP--GKWTKNG 43
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 47.2 bits (112), Expect = 2e-07
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN----VITQNPRI 80
V VG L C +G W I N ++ R
Sbjct: 5 VEVKGVVGHPVTLPCTYSTYRGI--TTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 81 SLTYNDHRSWF-LNIKNVQESDRGWYMCQVNT 111
+L + L I+N ESD G Y C+V
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEI 94
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 46.5 bits (111), Expect = 2e-07
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 24/99 (24%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P + + V G++ V +V W + +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQ----------SKPTAEVKWYHNGVE---------L 49
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ +I T L I + D G Y TN
Sbjct: 50 QESSKIHYTNTSGVL-TLEILDCHTDDSGTYRAVC-TNY 86
Score = 38.0 bits (89), Expect = 2e-04
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 154 GYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
G + P I + V N Q P V W +G L +
Sbjct: 1 GPFTLDHAPRITLR--MRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESSK 54
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 48.6 bits (115), Expect = 2e-07
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 19/112 (16%)
Query: 107 CQVNTNPRISLT-------------YNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSR 152
C + N+ + L + V + Y+C +
Sbjct: 23 CSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK 82
Query: 153 QGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPY--VMWRRED 201
+++ P + S L + +T+ C YP + + D
Sbjct: 83 GIQVEIYSFPKDPEIHLSGPLEAGK--PITVKCSVADVYPFDRLEIDLLKGD 132
Score = 39.4 bits (91), Expect = 3e-04
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
++ P + + + +V+L C G P+ WR + + L+ E
Sbjct: 1 FKIETTPE-------SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE 50
Score = 30.9 bits (69), Expect = 0.22
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
P E + + G+ + C V ++ F L I + +Q L +
Sbjct: 91 FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV--NTNPRISLTYNDHRSWFLNIK 130
+ +T V E +C+ + + S+ L +
Sbjct: 151 TKSLEVT----------FTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 46.2 bits (110), Expect = 3e-07
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
+ ++ + V VTL C+ P P + W + DG L L+
Sbjct: 7 GLEEVQLVVE--PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSPVLI 60
Score = 34.3 bits (79), Expect = 0.005
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 33/99 (33%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
V G L C V Q+ W++ +
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVP----------AQPSPQIHWMKDGVP---------L 51
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
P L + + D+G Y C T+
Sbjct: 52 PLPPSPVLI----------LPEIGPQDQGTYSCVA-THS 79
Score = 29.3 bits (66), Expect = 0.33
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 127 LNIKNVQESDRGWYMCQ-VNT--DPMRSRQGYLQVVVP 161
L + + D+G Y C ++ P SR + ++ P
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 48.2 bits (114), Expect = 3e-07
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIID--KDTSTDLVVREQANVTL 183
I + S G C+ D Y+ VVV I D S + + + L
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125
Query: 184 NCKAQGYPEPYVMWR 198
NC A+ + +
Sbjct: 126 NCTARTELNVGIDFN 140
Score = 41.3 bits (96), Expect = 8e-05
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
+W Q + + + + L I V SD+G Y C +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST-----LTIDGVTRSDQGLYTCAASSGL 194
Query: 148 PMRSRQGYLQVVVPP 162
+ +++V P
Sbjct: 195 MTKKNSTFVRVHEDP 209
Score = 27.8 bits (61), Expect = 2.1
Identities = 5/41 (12%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
S+ D+ + + V + C V
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYP 47
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 46.5 bits (111), Expect = 3e-07
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+P+ + V G D L C + R G V W++ D + I ++
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELS--------RAGTPVHWLK-DRK--------AIRKS 51
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
+ + + L I+ D G Y C+V
Sbjct: 52 QKYDVVCEGTMA-MLVIRGASLKDAGEYTCEVE 83
Score = 34.6 bits (80), Expect = 0.005
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
P +II D V +V L C+ P V W ++
Sbjct: 8 PAAIIKP--LEDQWVAPGEDVELRCELSRAGTP-VHWLKDR 45
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 47.2 bits (112), Expect = 3e-07
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 30/149 (20%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
P + VG +A L C + K G+ +GW R ++ ++ N Q+ +
Sbjct: 12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWY----RSPFSRVVHLYRNGKDQDAEQAP 67
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
Y G +++L I+NV+ SD G Y C
Sbjct: 68 EYRGRTELLKE-----SIGEG----------KVALR----------IQNVRFSDEGGYTC 102
Query: 143 QVNTDPMRSRQG-YLQVVVPPSIIDKDTS 170
+ L+V P I+ S
Sbjct: 103 FFRDHSYQEEAAVELKVEDPFYWINPGRS 131
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 46.2 bits (110), Expect = 3e-07
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 20/101 (19%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIH 70
S S + + + V G CV+ W
Sbjct: 2 SSGSSGHVGITKRLKTMEVLEGESCSFECVLS--HESASDPAMW---------------T 44
Query: 71 HN--VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
+ + R T + L ++ SD G + V
Sbjct: 45 VGGKTVGSSSRFQATRQGRKY-ILVVREAAPSDAGEVVFSV 84
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 45.8 bits (109), Expect = 4e-07
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ I + G C + + QV W Q + +
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKI------ENYDQSTQVTWYFGVRQ---------LENS 46
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ +TY D + L +K++ + D G Y C+V N
Sbjct: 47 EKYEITYEDGVA-ILYVKDITKLDDGTYRCKV-VND 80
Score = 35.4 bits (82), Expect = 0.002
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 172 DLVVREQANVTLNCKAQGYPEPY-VMWRRED 201
V E +V CK + Y + V W
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGV 40
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 46.2 bits (110), Expect = 4e-07
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 22/98 (22%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN--VIT 75
P + + V G L V G + + W I
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVT---GTQPITCTWM---------------KFRKQIQ 49
Query: 76 QNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ + + +++ S L I ++ G Y V N
Sbjct: 50 ESEHMKVENSENGS-KLTILAARQEHCGCYTLLV-ENK 85
Score = 41.9 bits (99), Expect = 1e-05
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELLT 215
P II D VR +V L K G W + + + ++
Sbjct: 7 GPQIIQF--PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVEN 58
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 45.6 bits (108), Expect = 5e-07
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ-GYPEPYVMWRREDGANLS 206
L P ++ + VR A+VT C A+ P ++W R L
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP 54
Score = 37.5 bits (87), Expect = 4e-04
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 28/103 (27%)
Query: 8 PVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQ 64
P+++ S+ +M E + +V G D C + + W R+
Sbjct: 2 PLAAPSKPIMVTVEEQ-RSQSVRPGADVTFICTAKS---------KSPAYTLVWTRLHNG 51
Query: 65 TILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
+ P ++ +N L I+NVQ SD G Y+C
Sbjct: 52 KL-----------PSRAMDFNGI----LTIRNVQPSDAGTYVC 79
Score = 32.5 bits (74), Expect = 0.021
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVV 160
L I+NVQ SD G Y+C N M L V V
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 46.6 bits (110), Expect = 5e-07
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 16/96 (16%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHH--- 71
F + + VG L C G ++ W
Sbjct: 22 AGFVQAPLSQQRWVGGSVELHCEAV----------GSPVPEIQWWFEGQGPNDICSQLWD 71
Query: 72 NVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 107
I TY+ H + ++I + E D G Y C
Sbjct: 72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
Score = 41.9 bits (98), Expect = 2e-05
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNG 209
+ + +V L+C+A G P P + W E
Sbjct: 17 RGSHMAGFVQA--PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 45.7 bits (108), Expect = 5e-07
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN----VITQNPRISL 82
V VG++A L C + + W + T + + ++ R L
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 83 TYNDHRSWF-LNIKNVQESDRGWYMCQV 109
+ ++ L IKNV D G Y C++
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRI 91
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 45.0 bits (107), Expect = 6e-07
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 18/94 (19%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+P+ V V VG A + W Q + +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSEPDV--------HGQWKL-KGQ--------PLAAS 48
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
P + + + L + N Q G Q
Sbjct: 49 PDCEIIEDGKKH-ILILHNCQLGMTGEVSFQAAN 81
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 45.0 bits (107), Expect = 8e-07
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 24/99 (24%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVI 74
P + + G L G W D +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFI----------GAPDPTATWTVGD---------SGA 43
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
P + + + + + + +D G Y +V N
Sbjct: 44 ALAPELLVDAKSSTT-SIFFPSAKRADSGNYKLKV-KNE 80
Score = 43.1 bits (102), Expect = 3e-06
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ P I+ + ++ L G P+P W D
Sbjct: 1 LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTVGD 40
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 44.2 bits (105), Expect = 1e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
LQ+ V P+ + + + L C A G P P+ W + + L++
Sbjct: 4 LQICVEPT--------SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETKKLY 52
Score = 34.6 bits (80), Expect = 0.004
Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 26/93 (27%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ + G +L CV G W + + +T
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAV---GSPIPHYQWFKNELPLTHET------------ 48
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
+ V +G Y C V
Sbjct: 49 -----------KKLYMVPYVDLEHQGTYWCHVY 70
Score = 30.0 bits (68), Expect = 0.16
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 127 LNIKNVQESDRGWYMCQV--NTDPMRSRQGYLQVVVPPSI 164
+ V +G Y C V + D S++ + + ++
Sbjct: 52 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 44.8 bits (106), Expect = 1e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 10 SSVSE-SLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILS 68
SS ++ S + V +L C + +V W + D +
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA--------EVRWTK-DGE---- 51
Query: 69 IHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
+ ++P + L D L + VQ D G Y+C++
Sbjct: 52 ----EVVESPALLLQKEDTVR-RLVLPAVQLEDSGEYLCEI 87
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTELL 214
V I+ + V L C+ P V W + DG + + L
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQ 62
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 44.9 bits (106), Expect = 2e-06
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 20 FAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP- 78
+ ++TV G + L + +K Q+ W Q I+
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYK------QLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 79 ----RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLT 118
R+ L D +S L I VQ+ D Y+ +V
Sbjct: 61 KFKGRVRL---DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE 101
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 44.3 bits (105), Expect = 2e-06
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 22/106 (20%)
Query: 11 SVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTIL 67
S S P F + + + G C V G ++ W + D + I
Sbjct: 2 SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRV----------AGNPKPKIYWFK-DGKQIS 50
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ ++ + + L+ D G Y NP
Sbjct: 51 -------PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA-ANP 88
Score = 42.0 bits (99), Expect = 1e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ E VT C+ G P+P + W + DG +S D
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSD 54
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 44.6 bits (105), Expect = 2e-06
Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN----VITQNPRI 80
V G L C+ + + W + R I N +N R
Sbjct: 5 TAVQGLAGHPVTLPCIYS-THLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 81 SLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTN 112
L N L I+N D G Y C V
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIP 96
Score = 37.6 bits (87), Expect = 5e-04
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNT 146
N R L N L I+N D G Y C V
Sbjct: 59 RNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEI 95
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.9 bits (103), Expect = 2e-06
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 14 ESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNV 73
+ P + G D C + + W + + + H
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAAS-SSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 74 ITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTN 112
+ T L ++NV+ + G Y C ++ +
Sbjct: 66 AQGGELMEYTTI------LRLRNVEFTSEGXYQCVISNH 98
Score = 30.8 bits (69), Expect = 0.12
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198
P I + + ++V+ C A + + +
Sbjct: 11 PQITVQPETQ--SAIXGSDVSFTCSAASSSDSPMTFA 45
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 43.5 bits (103), Expect = 3e-06
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 9 VSSVSESLMPHFAEPIP-NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
SS+ E F + + V+ G L + + +V W++ + Q
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDA--------EVKWLK-NGQ--- 54
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
I + + + L I +D Y C V
Sbjct: 55 -----EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 43.5 bits (103), Expect = 3e-06
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ V PS D V E + L C +G P P + W
Sbjct: 6 SGMEVAPSFSSV--LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNG 49
Score = 39.2 bits (92), Expect = 8e-05
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 29/109 (26%)
Query: 10 SSVSESLM--PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQ 64
SS S + P F+ + + V G+D +L C V G ++ W+ + Q
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVR----------GTPVPRITWLL-NGQ 50
Query: 65 TILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
I Q R + L+I++ D G Y C N
Sbjct: 51 PI---------QYARSTCEAGVAE---LHIQDALPEDHGTYTCLA-ENA 86
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 22 EPIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRI 80
V VG L C + + W+ I H+
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY-QPEGGRDAISIFHYAKGQPYIDE 62
Query: 81 SLTYNDHRSWF---------LNIKNVQESDRGWYMCQVNTNPRI 115
T+ + W + I N+ SD G + C V P I
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDI 106
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 43.2 bits (102), Expect = 4e-06
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 21/104 (20%)
Query: 10 SSVSESLMPHFAEP--IPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTIL 67
SS S H P ++T T +L C + + W + D Q
Sbjct: 2 SSGSS-GPVHILSPQDKVSLTFTTSERVVLTCELSRVDF--------PATWYK-DGQ--- 48
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ ++ + + + + L + + D G + C+
Sbjct: 49 -----KVEESELLVVKMDGRKH-RLILPEAKVQDSGEFECRTEG 86
Score = 30.8 bits (70), Expect = 0.11
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
P I+ L V L C+ + W + DG + + +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYK-DGQKVEESELLVV 58
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 43.2 bits (102), Expect = 4e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 18 PHFAEPIP---NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVI 74
FA+ P V G A L+C V + +V W + D + +
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVAQAQT--------EVTWYK-DGKK--------L 51
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ + ++ + L ++ +++ G Y C+
Sbjct: 52 SSSSKVRVEAVGCTR-RLVVQQAGQAEAGEYSCEAGG 87
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.1 bits (102), Expect = 5e-06
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 158 VVVPPSI-IDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
+ PP I + + + + + L QG P P V+W + GA L
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLD 66
Score = 35.4 bits (82), Expect = 0.003
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 25/91 (27%)
Query: 26 NVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTILSIHHNVITQNPRISL 82
VG L G QV W + + R+ +
Sbjct: 33 TYIRKVGEQLNLVVPFQ----------GKPRPQVVWTK-GGAPL---------DTSRVHV 72
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+D + ++ SD G Y V
Sbjct: 73 RTSDFDT-VFFVRQAARSDSGEYELSV-QIE 101
Score = 35.1 bits (81), Expect = 0.004
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPP 162
R+ + +D + ++ SD G Y V + + ++VV
Sbjct: 69 RVHVRTSDFDT-VFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 44.8 bits (105), Expect = 5e-06
Identities = 31/200 (15%), Positives = 49/200 (24%), Gaps = 49/200 (24%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP------ 78
+VTV G L+ C V W R + V T NP
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAE--VVATNNPDRRVKP 65
Query: 79 ----RISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQ 133
R L + + L+I + + D G Y +V + +Y ++
Sbjct: 66 ETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNK---------- 115
Query: 134 ESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC----KAQG 189
L + V I D + L+C +
Sbjct: 116 ----------------------LNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEA 153
Query: 190 YPEPYVMWRREDGANLSYNG 209
P W + L
Sbjct: 154 GPPLTFSWTGNALSPLDPET 173
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 45.4 bits (106), Expect = 5e-06
Identities = 26/189 (13%), Positives = 46/189 (24%), Gaps = 30/189 (15%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGW-------QVAWVRVDTQTILSIHHNVITQN 77
P V +G+DALL + + W R + N
Sbjct: 166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLN 225
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDR 137
++ ++ + + VQ
Sbjct: 226 GQMPAAQEGAVAFAAWDDDEPWGPWTGNG-------------------TFWLPRVQPFQE 266
Query: 138 GWYMCQVNTDPMRSRQGY-LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPY- 194
G Y+ ++ ++ + L V PP + + +A L C YP
Sbjct: 267 GTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGL 326
Query: 195 -VMWRREDG 202
V W G
Sbjct: 327 EVEWELRGG 335
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 43.0 bits (101), Expect = 6e-06
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 151 SRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP-YVMWRRED 201
G L V PP I T + C + P P + W ++
Sbjct: 4 GSSGTLTVNGPPIISSTQTQH---ALHGEKGQIKCFIRSTPPPDRIAWSWKE 52
Score = 32.2 bits (73), Expect = 0.041
Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 13/97 (13%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P + G + C + ++AW + +
Sbjct: 15 PIISST-QTQHALHGEKGQIKCFIR------STPPPDRIAWSWKENVLESGTSGRYTVET 67
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRG-WYMCQVNTNP 113
T S L I N+ +D Y C N
Sbjct: 68 ---ISTEEGVIST-LTISNIVRADFQTIYNCTA-WNS 99
Score = 25.6 bits (56), Expect = 7.6
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRG-WYMCQV 144
+W ++ G Y + + ++ L I N+ +D Y C
Sbjct: 47 AWSWKENVLESGTSGRYTVETISTEEGVIST-------LTISNIVRADFQTIYNCTA 96
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 42.0 bits (99), Expect = 1e-05
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 27/111 (24%)
Query: 18 PHFAEPIP----NVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN- 72
P++ V C G + W N
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPMPTMRWL---------------KNG 46
Query: 73 -VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP--RISLTYN 120
Q RI ++ W L +++V SD+G Y C V N I+ TY+
Sbjct: 47 KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYGSINHTYH 96
Score = 41.3 bits (97), Expect = 2e-05
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 161 PPSIID--KDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
P + K V V C A G P P + W + +G
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR 54
Score = 36.3 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+ RI ++ W L +++V SD+G Y C V
Sbjct: 48 EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 84
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 44.0 bits (103), Expect = 1e-05
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
+ I+ G Y +V + ++++ +D+D V ++LN
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY 206
Query: 186 K--------AQGYPEPYVMW 197
+ G P + +
Sbjct: 207 VVSEDIVGDSSGMPNLTIKY 226
Score = 35.6 bits (81), Expect = 0.008
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 23 PIPNVTVTVGRDALLACVV-----DNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ + TV +G + L VV + G L I + R + I V
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQ 108
S+T + H L ++ D + C
Sbjct: 250 EGFSITPDGH----LFKESATYDDTAKFWCV 276
Score = 29.8 bits (66), Expect = 0.62
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKDTS-TDLVVREQANVTLN 184
L + + + G Y V +TD M S + + ++ +I T V Q +V L+
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 185 CKAQG 189
+
Sbjct: 114 ATVKF 118
Score = 27.9 bits (61), Expect = 2.6
Identities = 13/96 (13%), Positives = 21/96 (21%), Gaps = 24/96 (25%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ G L V G + L W + D N
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVA---GDEPLPSNLTYTWTKDDQP---------HENN 50
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTN 112
L + + + G Y V +T+
Sbjct: 51 TAT-----------LTVADATSENAGSYKVTVQDTD 75
Score = 27.1 bits (59), Expect = 4.5
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 75 TQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQE 134
+ P +++ YN W+L + Q S S+T + H L ++
Sbjct: 217 SGMPNLTIKYN----WYLQ-REGQLSPTLIGSEVGEALEGFSITPDGH----LFKESATY 267
Query: 135 SDRGWYMCQ 143
D + C
Sbjct: 268 DDTAKFWCV 276
Score = 27.1 bits (59), Expect = 4.6
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVM---WRREDGANLSYNGDT 211
+ ++ S TL G P P + W + D N T
Sbjct: 1 MAFTVSI--QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTAT 53
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 42.2 bits (99), Expect = 1e-05
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 31/136 (22%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
+VT T D + C+ D L+G++ + + W V L Q + Y
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK----Y 64
Query: 85 NDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
R+ +++ L I +Q DR Y C+V
Sbjct: 65 RG---------------------------RLKVSHKVPGDVSLQINTLQMDDRNHYTCEV 97
Query: 145 NTDPMRSRQGYLQVVV 160
Q ++
Sbjct: 98 TWQTPDGNQVIRDKII 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 44.0 bits (103), Expect = 1e-05
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 104 WYMCQVNTNPRISLTYNDHRSWFLNIKNV-QESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162
W + ++ + + S L + NV + +R C + G +V V
Sbjct: 192 WILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWA-----ENDVGRAEVSVQV 245
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGA 203
++ + E + + G P P + W
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286
Score = 39.0 bits (90), Expect = 6e-04
Identities = 11/87 (12%), Positives = 24/87 (27%)
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQ 188
++ +E G Q + ++ K + V +V L C+ +
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVE 183
Query: 189 GYPEPYVMWRREDGANLSYNGDTELLT 215
G W + + + L
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLP 210
Score = 38.2 bits (88), Expect = 0.001
Identities = 19/130 (14%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 39 CVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNV-----ITQNPRISLTYNDHRSWFLN 93
C +N G + + V++ H+ + P SL W N
Sbjct: 230 CWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLR------WLFN 283
Query: 94 IKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSR 152
+ E+ + T R L + + G Y N S
Sbjct: 284 GSVLNETSF------IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 337
Query: 153 QGYLQVVVPP 162
+ P
Sbjct: 338 SIMAAFMDNP 347
Score = 33.6 bits (76), Expect = 0.036
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 17/107 (15%)
Query: 10 SSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGW---QVAWVRVDTQTI 66
+ VS + F + T + VD G + W+ +
Sbjct: 239 AEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD----------GQPAPSLRWLFNGSVLN 288
Query: 67 LSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ I R L + + G Y NP
Sbjct: 289 ---ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA-ANP 331
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHN----VITQNPRISL 82
+ +G+ L C + + W + + + ++ + +L
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQ-SRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTL 64
Query: 83 TYNDHRSWF-LNIKNVQESDRGWYMCQVNT 111
L I N D G Y C++
Sbjct: 65 LGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
Score = 38.4 bits (89), Expect = 3e-04
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNT-DPMRSRQGYLQVVVPPS 163
+ + +L L I N D G Y C++ + +++ + +
Sbjct: 58 KSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRA 112
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 41.8 bits (98), Expect = 2e-05
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 27/140 (19%)
Query: 23 PIPNVTVTVGRDALLACVVD-NLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
P + G A L C + + L I W ++ + I ++
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYM 141
+ N +++ D S+ + N+Q SD G Y
Sbjct: 71 PDLKGRVHFTSN--DLKSGD-------------ASIN----------VTNLQLSDIGTYQ 105
Query: 142 CQVNTDP-MRSRQGYLQVVV 160
C+V P + +++ +L V+V
Sbjct: 106 CKVKKAPGVANKKIHLVVLV 125
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 41.3 bits (96), Expect = 3e-05
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRIS 81
P + ++VG +L C + + I + W ++ N + S
Sbjct: 13 SPSHGIELSVGEKLVLNCTA---RTELNVGIDFN--WEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
+ L I V SD+G Y C +
Sbjct: 68 EMKKFLST--LTIDGVTRSDQGLYTCAAS 94
Score = 30.9 bits (69), Expect = 0.13
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 168 DTSTDLVVREQANVTLNCKAQGYPEPYVMWRRE 200
S + + + LNC A+ + + E
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 45
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 42.4 bits (99), Expect = 4e-05
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 112 NPRISLTYNDHRSW--FLNIKNVQESDRGWYMCQVNTDPMRSRQG-YLQVVVPPSIIDKD 168
P ++ +S L + +Q + G Y C+V P++++ L+VV P+
Sbjct: 67 RPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASR--- 123
Query: 169 TSTDLVVREQANVTLNCKAQG-YPEP-YVMWRRED 201
D V ++ C++ G YPE + W ++
Sbjct: 124 LLLDQVGMKENEDKYMCESSGFYPEAINITWEKQT 158
Score = 26.2 bits (57), Expect = 7.5
Identities = 5/66 (7%), Positives = 16/66 (24%), Gaps = 18/66 (27%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEP-----YVMWRREDGAN----LS 206
++++ + + NVT+ C + W +
Sbjct: 5 VEMMAGGT---------QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKV 55
Query: 207 YNGDTE 212
+ +
Sbjct: 56 FEFFGD 61
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 40.1 bits (94), Expect = 4e-05
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
WF N + ES +I +T + L + N + G Y N
Sbjct: 34 QWFYNGAILNESKY--------ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEY 85
Query: 148 PMRSRQGYLQVVVPPSI 164
+Q + P I
Sbjct: 86 GKDEKQISAHFMGWPGI 102
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 158 VVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
V P+I ++ + + +G P+P + W +GA L+ +
Sbjct: 1 VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICT 50
Score = 32.8 bits (75), Expect = 0.018
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 72 NVITQNPRISLTY----NDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ ++ I + L + N + G Y N
Sbjct: 40 AILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA-KNE 84
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 41.8 bits (98), Expect = 4e-05
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRS-RQGYLQVVV-----PPSIIDKDTSTDLVVREQAN 180
I ++ + G Y CQ R L++VV P + LV+ N
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS---ADRGLVLMPGEN 122
Query: 181 VTLNCKAQGYPEPYVMWRREDGANLS 206
++L C + P +E +L
Sbjct: 123 ISLTCSSAHIPFDRFSLAKEGELSLP 148
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 40.4 bits (94), Expect = 5e-05
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGW-QVAWVRVDTQTILSIHHNVITQNPRISLTYN 85
+ G+ + C G + GW + A V + + S + R ++ +
Sbjct: 20 LQSVAGQTLTVRCQYPP-TGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD 78
Query: 86 DHRSWF-LNIKNVQESDRGWYMCQVNTNPRISLT 118
+F + + +++E D G Y C++ S++
Sbjct: 79 PDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVS 112
Score = 34.6 bits (79), Expect = 0.007
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 112 NPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQV--NTDPMRSRQGYLQVVV 160
R ++ + +F + + +++E D G Y C++ +D S+ +VV
Sbjct: 70 TSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 39.9 bits (93), Expect = 8e-05
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V G + C + R W Q A T I S + R +LT
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCIT-LISSEGYVSSKYAGRANLTN 68
Query: 85 NDHRSWF-LNIKNVQESDRGWYMCQVNTNPR 114
F +NI + + D G Y C + N R
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99
Score = 29.5 bits (66), Expect = 0.34
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQV 144
R +LT F +NI + + D G Y C +
Sbjct: 60 YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL 94
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 40.6 bits (95), Expect = 1e-04
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 144 VNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ + P + + E V + C+ YP + W R+
Sbjct: 2 TYAAASSALVPRGSHMYAPKL---QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDG 56
Score = 39.8 bits (93), Expect = 2e-04
Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 7 EPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTI 66
V S P P V G + C V + I W D Q +
Sbjct: 9 ALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEV---FAYPSATISW-----FRDGQLL 59
Query: 67 LSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
S + I + S +L + E+D G Y C
Sbjct: 60 PS------SNYSNIKIYNTPSAS-YLEVTPDSENDFGNYNCTAVN 97
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 39.7 bits (92), Expect = 1e-04
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 160 VPPSII---DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDG 202
PP I +VV + L+ G P P V+W++
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAIT 57
Score = 34.7 bits (79), Expect = 0.006
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVV------------DNLKGFKGLRIGWQVAWVRVDTQ 64
+ + V G L + +G K A
Sbjct: 18 LDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDS 77
Query: 65 TILSIHHNVITQN-PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ + R+ + RS ++ ++ D G Y V NP
Sbjct: 78 DEWVFDKKLLCETEGRVRVETTKDRSI-FTVEGAEKEDEGVYTVTV-KNP 125
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 23/97 (23%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
+ + V G L C + + + W+R Q + +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ--------SINWLRDGVQ---------LAE 45
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R +T + +++ +D G Y C ++P
Sbjct: 46 SNRTRIT-----GEEVEVQDSVPADSGLYACVT-SSP 76
Score = 34.3 bits (79), Expect = 0.006
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
S + +V + L C+ + + W R DG L+ + T +
Sbjct: 3 SGSSGVE--VESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLAESNRTRI 51
Score = 33.1 bits (76), Expect = 0.014
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSI 164
Q+ + R +T + +++ +D G Y C + P S Y V V ++
Sbjct: 42 QLAESNRTRIT-----GEEVEVQDSVPADSGLYACVT-SSPSGSDTTYFSVNVSDAL 92
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 39.0 bits (91), Expect = 2e-04
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 156 LQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
L V PP ++ + + + +G P P + W
Sbjct: 3 LTVYYPPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLHNG 43
Score = 38.6 bits (90), Expect = 2e-04
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 10/85 (11%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTD 147
W N + ++ES + L + G Y N
Sbjct: 38 HWLHNGQPLRESKIIHVE---------YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPL 88
Query: 148 PMRSRQGYLQVVVPPSIIDKDTSTD 172
++ + P +D+ + T
Sbjct: 89 GTANQTINGHFLKEPFPVDEVSPTP 113
Score = 34.0 bits (78), Expect = 0.008
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 73 VITQNPRISLTY---NDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ ++ I + Y + L + G Y NP
Sbjct: 45 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA-KNP 87
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 38.2 bits (89), Expect = 2e-04
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
+ ++ V G L C + + + W+R Q + ++
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDVQ--------SINWLRDGVQ---------LVES 52
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
R +T + +++ +D G Y C ++P
Sbjct: 53 NRTRITGE-----EVEVRDSIPADSGLYACVT-SSP 82
Score = 34.4 bits (79), Expect = 0.005
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+ P + + L+V + L C+ + + W R DG L + T +
Sbjct: 5 EQAQPWGVPVE--VESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVESNRTRI 57
Score = 30.5 bits (69), Expect = 0.11
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMR-SRQGYLQV 158
Q+ + R +T + +++ +D G Y C ++ + + V
Sbjct: 48 QLVESNRTRITGE-----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 39.9 bits (92), Expect = 2e-04
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYM 141
+ + N+ + + RG Y C+ + + +R +D
Sbjct: 41 IGFLTEDKKKWNLGSNAKDPRGMYQCKG-SQNKSKPLQVYYRMG--------SADDAKKD 91
Query: 142 CQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
D + + + V V L C YP ++W+ +
Sbjct: 92 AAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQH-N 148
Query: 202 GANLSYNGD 210
N+ + D
Sbjct: 149 DKNIGGDED 157
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V VG + C + K + L W I+ + +N R+S+
Sbjct: 6 VAGPVGGSLSVQCPYE--KEHRTLNKYWCRPPQIFL--CDKIVETKGSAGKRNGRVSIRD 61
Query: 85 NDHRSWF-LNIKNVQESDRGWYMCQVNTN 112
+ F + ++N+ E D G Y C V+T
Sbjct: 62 SPANLSFTVTLENLTEEDAGTYWCGVDTP 90
Score = 32.5 bits (74), Expect = 0.024
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTDPMRSRQG---YLQVVVPPS 163
N R+S+ + F + ++N+ E D G Y C V+T ++ ++V V P+
Sbjct: 53 RNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFPA 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 39.7 bits (93), Expect = 4e-04
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ I + + V E V C+A G P P ++W +S +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSN 432
Score = 33.2 bits (76), Expect = 0.061
Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 31/127 (24%)
Query: 8 PVSSVSESLMP-HFA--------EPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAW 58
+ L+P +F V V G C D G I W
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD---GDPPPAILW---- 419
Query: 59 VRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-----NTNP 113
+ ++S N R+++ + L ++ Q D G Y+C N +
Sbjct: 420 -LSPRKHLVSA-----KSNGRLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSM 469
Query: 114 RISLTYN 120
L
Sbjct: 470 PAHLHVR 476
Score = 26.6 bits (59), Expect = 7.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 109 VNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
+N R+++ + L ++ Q D G Y+C
Sbjct: 429 AKSNGRLTVFPDG----TLEVRYAQVQDNGTYLC 458
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 38.6 bits (90), Expect = 4e-04
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRS-RQGYLQVVV-----PPSIIDKDTSTDLVVREQAN 180
L I ++ S G Y C + S L++V PS+ V +
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS---AQPGPAVSSGGD 110
Query: 181 VTLNCKAQGYPEPYVMWR 198
VTL C+ + + + +++
Sbjct: 111 VTLQCQTRYGFDQFALYK 128
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 39.1 bits (91), Expect = 5e-04
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDT---STDLVVREQANVTL 183
I ++ G Y C + S L +V + D T V VT
Sbjct: 62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 121
Query: 184 NCKAQGYPEPYVMWR 198
C+ +++ +
Sbjct: 122 YCRLDTATSMFLLLK 136
Score = 29.1 bits (65), Expect = 1.0
Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 11/86 (12%)
Query: 127 LNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQV---VVPPSIIDKDTSTDLVVREQA 179
+ V + RG Y C + + S L V + S+ D
Sbjct: 154 FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSL----APEDPTFPADT 209
Query: 180 NVTLNCKAQGYPEPYVMWRREDGANL 205
T + + NL
Sbjct: 210 WGTYLLTTETGLQKDHALWDHTAQNL 235
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 38.7 bits (90), Expect = 6e-04
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRS-RQGYLQVVV-----PPSIIDKDTSTDLVVREQAN 180
+I ++ E G Y C + S L++VV P++ VV N
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS---ALPSPVVTSGEN 116
Query: 181 VTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
VTL C ++ + ++ E LS+ D++
Sbjct: 117 VTLQCGSRLRFDRFI-LTEEGDHKLSWTLDSQ 147
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 37.2 bits (86), Expect = 6e-04
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL-- 82
P + G A L C + +G L IG V W R + + + R++
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQG--RLAIGS-VTWFRDEVVPGKEVRNGTPEFRGRLAPLA 71
Query: 83 --TYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
+ L+I++V+ D Y+C+V
Sbjct: 72 SSRFLHDHQAELHIRDVRGHDASIYVCRVEV 102
Score = 31.8 bits (72), Expect = 0.048
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 118 TYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQG---YLQV 158
+ L+I++V+ D Y+C+V + G L V
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVV 117
Score = 28.4 bits (63), Expect = 0.83
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 153 QGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK----AQGYPEPYVMWRREDGAN 204
QG L V PP I E ++ L C V W R++
Sbjct: 6 QGALWVSQPPEIR---------TLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVP 52
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 37.2 bits (86), Expect = 6e-04
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
+ VG L+ C + W ++ Q ++S + R + +
Sbjct: 7 LQAPVGSSILVQCHYR--LQDVKAQKVWC-RFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 87 HRSWF-LNIKNVQESDRGWYMCQVNTNPRISLTYN 120
+ + +QE D G Y C V+ + +
Sbjct: 64 GGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHR 98
Score = 36.0 bits (83), Expect = 0.001
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 108 QVNTNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPP 162
+ R + + + + +QE D G Y C V+ + + + P
Sbjct: 50 RRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILP 105
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 38.7 bits (90), Expect = 8e-04
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 18/122 (14%)
Query: 78 PRISLTYND-HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESD 136
P TY ++ + ++N+ E+D G Y C + S V +
Sbjct: 66 PGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLV-----VTDKQ 120
Query: 137 RGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYV 195
+ + Q Q + + + + VTLNC + + Y+
Sbjct: 121 GSADDAKKDAAKKDGAQKVTQ-----------AQSSVSMPVRKAVTLNCLYETSWWSYYI 169
Query: 196 MW 197
W
Sbjct: 170 FW 171
Score = 30.6 bits (69), Expect = 0.31
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ ++ + ++ + C Y+ W
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHW 36
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 37.2 bits (86), Expect = 9e-04
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
V + CV + W + + + R+S+ N
Sbjct: 12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKI-LVKTSGSEQEVKRDRVSIKDNQ 70
Query: 87 HRSWF-LNIKNVQESDRGWYMCQVNTNPR 114
F + ++++ ++D Y C +
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGN 99
Score = 34.5 bits (79), Expect = 0.007
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSIIDKD 168
R+S+ N F + ++++ ++D Y C + T + + P ++
Sbjct: 60 KRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEET 119
Query: 169 TST 171
+S+
Sbjct: 120 SSS 122
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 37.9 bits (88), Expect = 0.001
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRS-RQGYLQVVV-----PPSIIDKDTSTDLVVREQAN 180
+I ++ E G Y C + S L++V+ P++ +V +
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS---ALPSPLVTSGKS 116
Query: 181 VTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
VTL C+++ + ++ +E A+ +E
Sbjct: 117 VTLLCQSRSPMDTFL-LCKERAAHPLLCLRSE 147
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 37.9 bits (88), Expect = 0.001
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQ--GYLQVVV-----PPSIIDKDTSTDLVVREQA 179
I ++ G Y C +D + L++VV P++ VV
Sbjct: 60 FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLS---AQPSPVVNSGG 116
Query: 180 NVTLNCKAQGYPEPYVMWRREDGANLSYNGDTE 212
NVTL C +Q + ++ +E +++
Sbjct: 117 NVTLQCDSQVAFDGFI-LCKEGEDEHPQCLNSQ 148
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 38.3 bits (89), Expect = 0.001
Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 3 SYFPEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62
Y P F V G+ A C V V W + D
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV-------VTWHKDD 520
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 109
+ + Q+ + YN + L I V+ D+G Y +
Sbjct: 521 RE---------LKQSVKYMKRYNGNDY-GLTINRVKGDDKGEYTVRA 557
Score = 36.4 bits (84), Expect = 0.005
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMWRRED 201
V E + C+ P V W ++D
Sbjct: 491 GTEVGEGQSANFYCRVIASSPPVVTWHKDD 520
Score = 31.3 bits (71), Expect = 0.20
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV 144
+W + + +++S + YN + L I V+ D+G Y +
Sbjct: 515 TWHKDDRELKQSVK------------YMKRYNGNDY-GLTINRVKGDDKGEYTVRA 557
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 13/82 (15%)
Query: 89 SWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-N-- 145
W N + E+ + T R L + + G Y N
Sbjct: 33 RWLFNGSVLNETSF------IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86
Query: 146 -TDPMRSRQGYLQVVVPPSIID 166
S + P +
Sbjct: 87 GQA---SASIMAAFMDNPFEFN 105
Score = 28.8 bits (64), Expect = 0.67
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 7/47 (14%)
Query: 73 VITQNPRISLTYNDH------RSWFLNIKNVQESDRGWYMCQVNTNP 113
V+ + I + + R L + + G Y NP
Sbjct: 40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA-ANP 85
Score = 26.4 bits (58), Expect = 3.8
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P+ + T+ E + + G P P + W +G+ L+
Sbjct: 3 MPASVQLHTAV-----EMHHWCIPFSVDGQPAPSLRWLF-NGSVLNET 44
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 37.8 bits (88), Expect = 0.001
Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 27/154 (17%)
Query: 56 VAWVRVDT----QTILSIHHNVITQNPRISLTYN----DHRSWFLNIKNVQESDRGWYMC 107
+ W R DT + I + T+ I Y ++ L ++ S Y C
Sbjct: 31 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFC 90
Query: 108 QVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDK 167
N+ + + + D + Q P S
Sbjct: 91 AS----GDLGQTNERLFF----GHGTKLSVLGSADDAKKDAAKKDGQVRQS--PQS---- 136
Query: 168 DTSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
L V E LNC + Y W ++
Sbjct: 137 -----LTVWEGETAILNCSYENSAFDYFPWYQQF 165
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 36.5 bits (84), Expect = 0.004
Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 43/188 (22%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTY 84
+V+V G A+L C V +L + W R I++ PR++ T
Sbjct: 11 KSVSVAAGESAILHCTVTSLIP------VGPIQWFRGAGPARELIYNQKEGHFPRVT-TV 63
Query: 85 NDHRSW-----FLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGW 139
++ ++I N+ +D G Y C S
Sbjct: 64 SESTKRENMDFSISISNITPADAGTYYCVKFRKG---------------------SPDTE 102
Query: 140 YMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYVMWR 198
+ T+ + VV P+ T V+ C++ G+ P +
Sbjct: 103 FKSGAGTELSVRAKPSAPVVSGPAARATPQHT---------VSFTCESHGFSPRDITLKW 153
Query: 199 REDGANLS 206
++G LS
Sbjct: 154 FKNGNELS 161
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 35.9 bits (83), Expect = 0.004
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 3/75 (4%)
Query: 127 LNIKNVQESDRGWYMCQVNTDP---MRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTL 183
I ++ G Y C S L V V VT
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 118
Query: 184 NCKAQGYPEPYVMWR 198
C+ +++ +
Sbjct: 119 YCRLDTATSMFLLLK 133
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 35.6 bits (82), Expect = 0.004
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSI 164
+ R ++ +N + + L+I + Q D Y C + + + G Q+VV P+I
Sbjct: 54 NKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDG-TQLVVKPNI 110
Score = 32.2 bits (73), Expect = 0.066
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNPRI 115
++ R ++ +N + + L+I + Q D Y C + N
Sbjct: 57 EDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF 97
Score = 27.9 bits (62), Expect = 2.1
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMW 197
L V E LNC + Y W
Sbjct: 9 SLTVWEGETAILNCSYEDSTFDYFPW 34
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 34.7 bits (80), Expect = 0.005
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDTQTILSIHHNVITQNPRISLTY 84
V+ + C G+K + W V T + + + + R+S+
Sbjct: 11 VSGQEQGSLTVQCRYT--SGWKDYKKYWCQGVPQRSCKT-LVETDASEQLVKKNRVSIRD 67
Query: 85 NDHRSWF-LNIKNVQESDRGWYMCQVNTN 112
N F + +++++ SD G Y C +
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWCGITKG 96
Score = 31.6 bits (72), Expect = 0.061
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 111 TNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQV---NTDPMRSRQGYLQVVVPPS 163
R+S+ N F + +++++ SD G Y C + DPM + V + P
Sbjct: 59 KKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFK----VTVNIGPV 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 36/156 (23%)
Query: 70 HHNVITQNPRISLTYNDHRSWF-------LNIKNVQESDRGWYMCQ-----VNTNPRISL 117
HH++ + Y D S F + K+VQ+ + + + + +S
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 118 TYNDHRSWFLNIKN----------VQESDRGWYMCQVNT---DPMRSRQGYLQVVVP--- 161
T W L K V + + M + T P + Y++
Sbjct: 64 TL--RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 162 -PSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPYV 195
+ K V R Q + L P V
Sbjct: 122 DNQVFAKYN----VSRLQPYLKLRQALLELRPAKNV 153
Score = 35.2 bits (80), Expect = 0.013
Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 26/137 (18%)
Query: 68 SIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWY------MCQVNTNPRISLTYND 121
++H +++ YN +++ + D+ +Y + + R++L
Sbjct: 444 ALHRSIVDH-------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL---- 492
Query: 122 HRSWFLN---IKN-VQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVRE 177
R FL+ ++ ++ W + ++ + Y I D D + +V
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDPKYERLVNA 547
Query: 178 QANVTLNCKAQGYPEPY 194
+ + Y
Sbjct: 548 ILDFLPKIEENLICSKY 564
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 35.6 bits (82), Expect = 0.007
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGY------LQVVV-----PPSIIDKDTSTDLVV 175
N+ V + G Y C+ + S G+ + ++V PS++ +V
Sbjct: 76 FNMSPVTTAHAGNYTCRGSH--PHSPTGWSAPSNPVVIMVTGNHRKPSLL---AHPGPLV 130
Query: 176 REQANVTLNCKAQGYPEPYVMWRREDGANLSYNGDTEL 213
+ V L C + E + +E + ++
Sbjct: 131 KSGERVILQCWSDIMFEHFF-LHKEGISKDPSRLVGQI 167
Score = 32.9 bits (75), Expect = 0.061
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGY------LQVVVPPSIIDKDTST--DLVVREQ 178
+I + + G Y C + L +VV S V+
Sbjct: 176 FSIGPMMLALAGTYRCYG--SVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAG 233
Query: 179 ANVTLNCKAQGYPEPYVMWRREDGA 203
+VTL+C ++ + Y RE GA
Sbjct: 234 ESVTLSCSSRSSYDMYH-LSREGGA 257
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.1 bits (77), Expect = 0.010
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 20/132 (15%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
V V G L C + I W + D T + + +
Sbjct: 10 THTEVEVHAGGTVELPCSYQLANDTQPPVISW-LKGASPDRSTKVFKGNYNWQGEGLGFV 68
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
+ ++ F + R S+ + L + +V D G Y C
Sbjct: 69 ESDSYKESFGDFLG-----------------RASVANLAAPT--LRLTHVHPQDGGRYWC 109
Query: 143 QVNTDPMRSRQG 154
QV +R+ G
Sbjct: 110 QVAQWSIRTEFG 121
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 34.5 bits (79), Expect = 0.013
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 127 LNIKNVQESDRGWYMCQ--VNTDPMRSRQ--GYLQVVV-----PPSIIDKDTSTDLVVRE 177
+I + + G Y C V P + L +V+ PS+ V
Sbjct: 65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLS---AQPGPTVLA 121
Query: 178 QANVTLNCKAQGYPEPYVMWR 198
NVTL+C ++ + Y + R
Sbjct: 122 GENVTLSCSSRSSYDMYHLSR 142
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 34.7 bits (80), Expect = 0.017
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 7 EPVSSVSESLM----PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62
+ + ++ P EP ++ VT G A L C V+W+ +
Sbjct: 327 RYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSL--------TSVSWITPN 378
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ RI++ + LN NV D G Y C V +N
Sbjct: 379 GTVM-----THGAYKVRIAVLSDG----TLNFTNVTVQDTGMYTCMV-SNS 419
Score = 34.0 bits (78), Expect = 0.028
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLS 206
P I++ DL V E L C+A V W +G ++
Sbjct: 341 APVIVE--PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMT 383
Score = 26.6 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPP 162
LN NV D G Y C V N+ + L V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 33.9 bits (77), Expect = 0.022
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVVVPPSII 165
+N R S T + D + L+I D Y C V + G Q++V P I
Sbjct: 55 DKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGT-QLIVIPYIQ 113
Query: 166 DKDTSTDLVVREQANVTLNCKAQGYP 191
+ + + + ++ + C +
Sbjct: 114 NPEPAVYQLKDPRSQDSTLCLFTDFD 139
Score = 31.6 bits (71), Expect = 0.15
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTN 112
N R S T + D + L+I D Y C V
Sbjct: 58 SNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDR 95
Score = 28.5 bits (63), Expect = 1.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMW 197
LVVR+ N L C P+ ++ W
Sbjct: 10 SLVVRQGENCVLQCNYSVTPDNHLRW 35
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 34.2 bits (78), Expect = 0.023
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 127 LNIKNVQESDRGWYMCQ--VNTDPMRSRQ--GYLQVVV-----PPSIIDKDTSTDLVVRE 177
+I + + G Y C V P + L +V+ PS+ + V
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP---TVLA 120
Query: 178 QANVTLNCKAQGYPEPYVMWR 198
+VTL+C ++ + Y + R
Sbjct: 121 GESVTLSCSSRSSYDMYHLSR 141
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 32.9 bits (75), Expect = 0.025
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGW--QVAWVRVDT--QTILSIHHNVITQNPRISL 82
+ G+ + C L+ F + W T T ++ Q RI L
Sbjct: 14 YELKEGQTLDVKCDYT-LEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIIL 72
Query: 83 TYNDHRSWF-LNIKNVQESDRGWYMCQVNTNPRISLTY 119
+ + N+Q D G Y C + P+
Sbjct: 73 EDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML 110
Score = 31.3 bits (71), Expect = 0.10
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 114 RISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTDP 148
RI L + + N+Q D G Y C + P
Sbjct: 69 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPP 104
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 34.0 bits (78), Expect = 0.028
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 161 PPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
P I+D DL + E L C+ P V W +G LS+
Sbjct: 352 APFIMD--APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA 395
Score = 33.2 bits (76), Expect = 0.048
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 23/111 (20%)
Query: 7 EPVSSVSESLM----PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVD 62
+ V ++ P + ++ ++ GR A L C + V W+ +
Sbjct: 338 RYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPM---------SSVKWLLPN 388
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + +++PRIS+ + LN +V SD G Y C V TN
Sbjct: 389 GTVL-----SHASRHPRISVLNDGT----LNFSHVLLSDTGVYTCMV-TNV 429
Score = 27.4 bits (61), Expect = 4.0
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 100 SDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV 158
G + + +PRIS+ + LN +V SD G Y C V N + YL V
Sbjct: 386 LPNGTVLSHASRHPRISVLNDGT----LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Query: 159 VVPPS 163
+
Sbjct: 442 STAGT 446
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 32.5 bits (74), Expect = 0.032
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 75 TQNPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTNPR 114
Q RI L + + N+Q D G Y C + P+
Sbjct: 60 VQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPK 100
Score = 31.3 bits (71), Expect = 0.074
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 112 NPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTDP----MRSRQGYLQVVVPPS 163
RI L + + N+Q D G Y C + P M + L V S
Sbjct: 62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFS 118
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 32.2 bits (73), Expect = 0.038
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSI 164
L I+N+ ++D G+Y V + + + Q V P +
Sbjct: 74 LLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPEL 111
Score = 28.4 bits (63), Expect = 0.70
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 22 EPIPNVTVTVGRDALLACVVDNLKG-------FKGLRIGW--QVAWVRVDTQTILSIHHN 72
E P V G++ LL +V NL +KG R+ Q+ + TQ
Sbjct: 6 ESTP-FNVAEGKEVLL--LVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP-- 60
Query: 73 VITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R + N L I+N+ ++D G+Y V +
Sbjct: 61 --AYSGREIIYPNA----SLLIQNIIQNDAGFYTLHVIKSD 95
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 32.1 bits (73), Expect = 0.049
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 25 PNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNP------ 78
NV G L+ C+ W + + H+ +
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGIT-AIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 79 RISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTY 119
R L N DH+ L +K+++ D G Y + +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLD 108
Score = 31.4 bits (71), Expect = 0.076
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 110 NTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY--LQVVVPP 162
R L N DH+ L +K+++ D G Y + V V
Sbjct: 63 RFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 32.6 bits (74), Expect = 0.051
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 111 TNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYL-----QVVVPPSI 164
N SL D +S L + D Y C + S + V P+I
Sbjct: 55 NNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNI 114
Query: 165 IDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206
+ D + + +++ C + V ++ ++
Sbjct: 115 QNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 157
Score = 26.5 bits (58), Expect = 6.9
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 172 DLVVREQANVTLNCKAQGY-PEPYVMW 197
+ E+ V L C Y+ W
Sbjct: 8 SMESNEEEPVHLPCNHSTISGTDYIHW 34
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 33.2 bits (75), Expect = 0.055
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 102 RGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT--DPMRSRQGYLQVV 159
+ I +T + N+ N + D G Y C + T S L V
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Query: 160 VPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWR 198
PP I + + LN + P V
Sbjct: 260 EPPVPIAPPQLASVGAT-YLWIQLNANSINGDGPIVARE 297
Score = 32.8 bits (74), Expect = 0.070
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 17 MPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQ 76
I NV V G+ A C G + + V
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAP----------- 209
Query: 77 NPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNT 111
I +T + N+ N + D G Y C + T
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT 244
Score = 29.7 bits (66), Expect = 0.84
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 107 CQVNTNPRIS----LTYNDHRSWF---LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV 158
+VN P + ++ + R+W L I + + + ++V
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKV 157
Query: 159 VVPPSIIDKDTS--TDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ P ++ V T C A G +
Sbjct: 158 LGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 32.7 bits (74), Expect = 0.057
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV----NTDPMRSRQGYLQVVVPP 162
V ++ S+ L +V SD Y C V + +G ++ V P
Sbjct: 64 VVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKG-AKLTVSP 122
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206
+I + D + + +++ C + V ++ ++
Sbjct: 123 NIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 167
Score = 28.5 bits (63), Expect = 1.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ V E A++ L CK PY+ W
Sbjct: 15 PDARVTVSEGASLQLRCKYSYSATPYLFW 43
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 32.6 bits (74), Expect = 0.063
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIID 166
RIS T N +L IK Q D Y+C NT + V P+I +
Sbjct: 54 DEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQN 113
Query: 167 KDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206
D + + +++ C + V ++ A ++
Sbjct: 114 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYIT 154
Score = 28.4 bits (63), Expect = 1.5
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMW 197
L V+E + C + W
Sbjct: 9 SLHVQEGDSTNFTCSFPSSNFYALHW 34
Score = 28.0 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTN 112
+ RIS T N +L IK Q D Y+C NT
Sbjct: 57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTG 94
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 31.9 bits (72), Expect = 0.075
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVR 176
L + + + G+Y C V ++ + + V+ T+T V+R
Sbjct: 92 LTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKV----NSTTTKPVLR 137
Score = 29.2 bits (65), Expect = 0.71
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 92 LNIKNVQESDRGWYMCQVNTNP 113
L + + + G+Y C V +N
Sbjct: 92 LTLNKFSKENEGYYFCSVISNS 113
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 32.5 bits (73), Expect = 0.076
Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 19/93 (20%)
Query: 18 PHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQN 77
P +T G L C + W + S
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVE--PEDNATVHW-----VLRKPAAGSHPSRWAGMG 59
Query: 78 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
R L +++VQ D G Y C
Sbjct: 60 RR------------LLLRSVQLHDSGNYSCYRA 80
Score = 27.5 bits (60), Expect = 3.5
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L +++VQ D G Y C P + +L V VPP + R+ + C+
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPAGTV--HLLVDVPP-----EEPQLSCFRKSPLSNVVCE 114
Query: 187 AQGYPEPY 194
P
Sbjct: 115 WGPRSTPS 122
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 32.2 bits (73), Expect = 0.080
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 111 TNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV----NTDPMRSRQGYLQVVVPPSII 165
R S + +L +K +Q D Y+C V + +G ++V P I
Sbjct: 55 EKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRG-TSLIVHPYIQ 113
Query: 166 DKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLSYNGDTE 212
+ D + + +++ C + V ++ ++ +
Sbjct: 114 NPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLD 161
Score = 29.5 bits (66), Expect = 0.62
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 64 QTILSIHHNVITQNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTN 112
+ + + + R S + +L +K +Q D Y+C V +
Sbjct: 43 TFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQAS 92
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.9 bits (72), Expect = 0.090
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY----LQVVVPP 162
+N R + T + D + L+I Q SD Y+C V+ + Y Q+ V P
Sbjct: 57 NTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWP 116
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQGYP 191
I + D + + +++ C +
Sbjct: 117 DIQNPDPAVYQLRDSKSSDKSVCLFTDFD 145
Score = 29.6 bits (66), Expect = 0.55
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
N R + T + D + L+I Q SD Y+C V+
Sbjct: 60 SNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRG 98
Score = 28.5 bits (63), Expect = 1.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ L++ E N TL C P + W
Sbjct: 9 SPQSLIILEGKNCTLQCNYTVSPFSNLRW 37
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 31.5 bits (71), Expect = 0.11
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 111 TNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY----LQVVVPPSII 165
R + N L+I++ Q SD Y C + ++ +V V P I
Sbjct: 58 KEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQ 117
Query: 166 DKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYN 208
+ D + + +++ C + + + +D +
Sbjct: 118 NPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD 160
Score = 30.0 bits (67), Expect = 0.41
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 66 ILSIHHNVITQNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++SI + + R + N L+I++ Q SD Y C +
Sbjct: 48 LMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQN 96
Score = 28.8 bits (64), Expect = 1.1
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMW 197
L V E +LNC + Y W
Sbjct: 11 SLSVPEGGMASLNCTSSDRNFQYFWW 36
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 31.5 bits (71), Expect = 0.16
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV--NTDPMRSRQGYLQVVVPPSI 164
+V R++ + + L+I Q D G Y+C + + +G ++ V P+I
Sbjct: 54 EVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKG-TKLSVKPNI 112
Query: 165 IDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGA 203
+ D + + +++ C + V ++
Sbjct: 113 QNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDV 152
Score = 28.8 bits (64), Expect = 0.94
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R++ + + L+I Q D G Y+C +
Sbjct: 57 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQ 95
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 31.8 bits (71), Expect = 0.16
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPM---------RSRQGYLQVVVPPSIIDKDTSTDLVVRE 177
+ ++ + C+ D S LQ V P+ + S ++ +
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD 203
Query: 178 QANVTLNCKAQG-YPEPYVMWRREDG-----ANLSYNGDTELLT 215
T+ C G +P G ++Y D+
Sbjct: 204 T-QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 246
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 30.7 bits (69), Expect = 0.17
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 92 LNIKNVQESDRGWYMCQVNTNP 113
L + + + G+Y C V +N
Sbjct: 87 LTLNKFSKENEGYYFCSVISNS 108
Score = 29.5 bits (66), Expect = 0.38
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVP 161
L + + + G+Y C V ++ + + V+
Sbjct: 87 LTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQK 121
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 30.7 bits (69), Expect = 0.22
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVN-TDPMRSRQGYLQVVVPPSII 165
++ TY+ S+ L +VQE D Y C N R G ++ V P+I
Sbjct: 54 NKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTG-TKLQVVPNIQ 112
Query: 166 DKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRREDGANLS 206
+ D + + +++ C + V ++ ++
Sbjct: 113 NPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 154
Score = 29.2 bits (65), Expect = 0.86
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ + E + +NC P + W
Sbjct: 6 MQGQVTLSENDFLFINCTYSTTGYPTLFW 34
Score = 27.7 bits (61), Expect = 2.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ TY+ S+ L +VQE D Y C N+
Sbjct: 57 SSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGT 95
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.9 bits (67), Expect = 0.31
Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 28/125 (22%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYND 86
VTV G + C W R S V T NP
Sbjct: 16 VTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDI--SWKAPVATNNPA------- 66
Query: 87 HRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVN 145
VQE R R L + ++ L+I++ + SD G Y ++
Sbjct: 67 --------WAVQEETRD----------RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRME 108
Query: 146 TDPMR 150
++
Sbjct: 109 KGNIK 113
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 30.5 bits (69), Expect = 0.34
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMWRRED 201
+ V E A++ L CK PY+ W +
Sbjct: 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQY 41
Score = 28.1 bits (63), Expect = 1.7
Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 26/128 (20%)
Query: 77 NPRISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSW----FLNIKN 131
++ S F L +V SD Y C + S+ L +
Sbjct: 62 VNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCA-----VSAKGTGSKLSFGKGAKLTVSP 116
Query: 132 VQESDRGWYMCQVNTDPMRSRQGYLQVVV--PPSIIDKDTSTDLVVREQANVTLNCKAQG 189
G + S G + V P V NVTL+C+
Sbjct: 117 GGGGSGGGG-----SGGGGSGGGGSEAAVTQSPRN--------KVTVTGENVTLSCRQTN 163
Query: 190 YPEPYVMW 197
Y+ W
Sbjct: 164 S-HNYMYW 170
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 29.2 bits (66), Expect = 0.38
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 169 TSTDLVVREQANVTLNCKAQG-YPEPYVMW 197
+S D V + V L C Y P + W
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 30.6 bits (69), Expect = 0.38
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 171 TDLVVREQANVTLNCKAQGYPEPYVMWRREDGANLSYNGD 210
+ +T+ C + V + LS +
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSN 293
Score = 30.2 bits (68), Expect = 0.48
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCK 186
L K VQ D G Y C + +++ V + TLN
Sbjct: 303 LFFKKVQVEDGGVYTCYA-MGETFNETLSVELKVYNF-----------TLHGHHDTLNAA 350
Query: 187 AQGYPEP 193
A + P
Sbjct: 351 ADPWSHP 357
Score = 28.3 bits (63), Expect = 1.9
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 19/91 (20%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
+G + C K G WV + V++Q S+
Sbjct: 252 KESAWEAHLGDTLTIRCDT------KQ--QGMTKVWVSPS-------NEQVLSQGSNGSV 296
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ + L K VQ D G Y C
Sbjct: 297 SVRNGD---LFFKKVQVEDGGVYTCYA-MGE 323
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.0 bits (67), Expect = 0.44
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 65 TILSIHHNVITQNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTN 112
L +N R+ T+N R L+IK+ Q D G Y C
Sbjct: 44 ITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDG 92
Score = 27.7 bits (61), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 112 NPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNT 146
N R+ T+N R L+IK+ Q D G Y C
Sbjct: 56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAED 91
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 29.6 bits (66), Expect = 0.50
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQ---GYLQVVVPPS 163
+ + R+ +T + +S L I + +D Y C +T + ++ V +
Sbjct: 54 REKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLAN 113
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGYP 191
I + D + + +++ C +
Sbjct: 114 IQNPDPAVYQLRDSKSSDKSVCLFTDFD 141
Score = 29.6 bits (66), Expect = 0.61
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTN 112
+ R+ +T + +S L I + +D Y C +T
Sbjct: 57 HSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTT 94
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.51
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 55 QVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRS---WFLNIKNVQESDRGWYMCQVNT 111
V W + + + + P++ ++ ++RS + L+ K + SD G Y C N
Sbjct: 46 NVTWCKHNGTIWVPLEVG-----PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 100
Query: 112 NPRI 115
N ++
Sbjct: 101 NSQV 104
Score = 25.6 bits (55), Expect = 8.6
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 109 VNTNPRISLTYNDHRS---WFLNIKNVQESDRGWYMCQVNTDP 148
+ P++ ++ ++RS + L+ K + SD G Y C N +
Sbjct: 60 LEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 102
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 29.8 bits (67), Expect = 0.52
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 126 FLNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQV----VVPPSIIDKDTSTDLVVREQAN 180
L I + + + C+V + + + P + + + +++ +
Sbjct: 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVS 128
Query: 181 VTLNCKAQG-YPEP-YVMWRRED 201
+T C +PE V W
Sbjct: 129 LT--CMITDFFPEDITVEWESNG 149
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.6 bits (66), Expect = 0.56
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV-----NTDPMRSRQGYLQVVVP 161
+ + T + S+ L + Q SD Y C + + + QG + V
Sbjct: 55 KRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQG-TSLSVV 113
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYP 191
P+I + + + + ++ + C +
Sbjct: 114 PNIQNPEPAVYQLKDPRSQDSTLCLFTDFD 143
Score = 28.8 bits (64), Expect = 0.93
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
T + + E V LNC Q P++ W
Sbjct: 7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35
Score = 27.7 bits (61), Expect = 2.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
++ T + S+ L + Q SD Y C +
Sbjct: 58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLAS 96
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 29.2 bits (65), Expect = 0.68
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 108 QVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQV-----NTDPMRSRQGYLQVVVP 161
+ T+ R++ + + L I Q D Y+C V + +G ++V
Sbjct: 54 REQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRG-TSLIVH 112
Query: 162 PSIIDKDTSTDLVVREQANVTLNCKAQGYP 191
P I + D + + R +++ C +
Sbjct: 113 PYIQNPDPAVYQLRRSKSSDKSVCLFTDFD 142
Score = 28.8 bits (64), Expect = 1.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 172 DLVVREQANVTLNCKAQGYPEPYVMW 197
L V E N+ LNC + W
Sbjct: 9 ALSVPEGENLVLNCSFTDSAIYNLQW 34
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNP 113
+ R++ + + L I Q D Y+C V
Sbjct: 57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTS 95
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 27.3 bits (61), Expect = 0.92
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQGY 155
I D WY + +G
Sbjct: 32 IIVTSVEDAEWYFGEYQDSNGDVIEGI 58
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.7 bits (64), Expect = 1.3
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 127 LNIKNVQESDRGWYMCQV-NTDPMRSRQGYLQVV----VPPSIIDKDTSTDLVVREQANV 181
L I + + C+V + + + P + + + + Q ++
Sbjct: 84 LPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSI 143
Query: 182 TLNCKAQG-YPEP-YVMWRRED 201
T C +G YP Y W+
Sbjct: 144 T--CMVKGFYPPDIYTEWKMNG 163
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.5 bits (63), Expect = 1.4
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQ-----------GYLQVVVPP 162
R S + L I++ + D Y+C + + + Q L+ V PP
Sbjct: 90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPP 149
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQGY--PEPYVMWRREDGANLS 206
+ + S + TL C A G+ + W +G +
Sbjct: 150 EVAVFEPSEA-EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVH 193
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 28.4 bits (63), Expect = 1.6
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY----------LQVVVPPS 163
R S+ D +N+ ++ D Y C + + L+ V PP
Sbjct: 64 RFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPK 123
Query: 164 IIDKDTSTDLVVREQANVTLNCKA-QGYPEPY-VMWRREDGANLS 206
+ + S + + TL C A +P+ + W +G +
Sbjct: 124 VSLFEPSKA-EIANKQKATLVCLARGFFPDHVELSWWV-NGKEVH 166
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 27.9 bits (61), Expect = 1.9
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 150 RSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEPYVMWRRED 201
+S Q V PP + V A+ L C+ V WR D
Sbjct: 1 QSLQVKPLQVEPPE-------PVVAVALGASRQLTCRLACADRGASVQWRGLD 46
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 28.0 bits (62), Expect = 2.1
Identities = 33/198 (16%), Positives = 55/198 (27%), Gaps = 46/198 (23%)
Query: 6 PEPVSSVSESLMPHFAEPIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQT 65
PE + S L P P P T+ + R + CVV + W D
Sbjct: 17 PELLGGPSVFLFP----PKPKDTLMISRTPEVTCVV---VDVSHEDPEVKFNWYV-DGVE 68
Query: 66 ILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSW 125
+ + T+ L + + + Y C+V ++
Sbjct: 69 VHN----AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV----------SNKALP 114
Query: 126 FLNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNC 185
K + ++ QV +PPS + + V+L C
Sbjct: 115 APIEKTISKAKGQPREPQV-------------YTLPPSRDELTKNQ---------VSLTC 152
Query: 186 KAQG-YPEP-YVMWRRED 201
+G YP V W
Sbjct: 153 LVKGFYPSDIAVEWESNG 170
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 169 TSTDLVVREQANVTLNCKAQ-GYPEPYVMW 197
T T + V E+ VT++C + ++ W
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFW 35
Score = 25.7 bits (57), Expect = 7.4
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 102 RGWYMCQVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRS 151
+ Y + T SL + S L I Q D Y C + D S
Sbjct: 50 QDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 27.2 bits (60), Expect = 2.2
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 27 VTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISLTYN- 85
V +G + R +AW ++ + P +++T+
Sbjct: 9 VNGILGESVTFPV------NIQEPRQVKIIAWTS--KTSVAYVTPGDSETAPVVTVTHRN 60
Query: 86 -------DHRSWFLNIKNVQESDRGWYMCQVNTN 112
++ L I +++ D G Y +NT
Sbjct: 61 YYERIHALGPNYNLVISDLRMEDAGDYKADINTQ 94
Score = 26.4 bits (58), Expect = 3.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 121 DHRSWFLNIKNVQESDRGWYMCQVNT 146
++ L I +++ D G Y +NT
Sbjct: 68 LGPNYNLVISDLRMEDAGDYKADINT 93
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 26.9 bits (60), Expect = 2.9
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 102 RGWYMCQVNTNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTDPMRS 151
+ Y + T SL + S L I Q D Y C + D S
Sbjct: 50 QDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
Score = 26.5 bits (59), Expect = 4.8
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 169 TSTDLVVREQANVTLNCKAQ-GYPEPYVMW 197
T T + V E+ VT++C + ++ W
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFW 35
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 27.4 bits (60), Expect = 3.2
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 76 QNPRISLTYN-DHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTY 119
+N R+ ++ R L+I++ Q D G Y C + + +
Sbjct: 57 ENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVF 101
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 27.3 bits (60), Expect = 3.3
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY----------LQVVVPPS 163
S++ S+ L + + Q++ +Y+C ++ + L+ V PP
Sbjct: 65 GYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPE 124
Query: 164 IIDKDTSTDLVVREQANVTLNCKAQGY 190
+ + S + TL C A G+
Sbjct: 125 VAVFEPSEA-EISHTQKATLVCLATGF 150
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 27.1 bits (60), Expect = 3.7
Identities = 23/181 (12%), Positives = 45/181 (24%), Gaps = 45/181 (24%)
Query: 23 PIPNVTVTVGRDALLACVVDNLKGFKGLRIGWQVAWVRVDTQTILSIHHNVITQNPRISL 82
+ +G +A L C + L+ G+ W + + Q +S
Sbjct: 10 RPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLC---GCYSVSS 66
Query: 83 TYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDHRSWFLNIKNVQESDRGWYMC 142
L + + C + + +
Sbjct: 67 V--------LPGCAEPWNHGKTFTCTAA-----------YPESKTPLTATLSKSGNTFRP 107
Query: 143 QVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQANVTLNCKAQG-YPEP-YVMWRRE 200
+V+ ++PP + VTL C A+G P+ V W +
Sbjct: 108 EVH-------------LLPPP--------SEELALNELVTLTCLARGFSPKDVLVRWLQG 146
Query: 201 D 201
Sbjct: 147 S 147
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 27.3 bits (60), Expect = 4.2
Identities = 8/86 (9%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 63 TQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPRISLTYNDH 122
++ + + I N ++ R +++ + + + P+ ++ H
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH-H 171
Query: 123 RSWFLNIKNVQESDRGWYMCQVNTDP 148
R + + + +N D
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDA 197
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 27.1 bits (60), Expect = 4.2
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ ++ + +V + C++ + + W
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFW 35
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.8 bits (58), Expect = 4.5
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 117 LTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY 155
++ + N+ N + RG Y CQ + Q Y
Sbjct: 145 ISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNPLQVY 183
Score = 26.0 bits (56), Expect = 9.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 82 LTYNDHRSWFLNIKNVQESDRGWYMCQVN 110
++ + N+ N + RG Y CQ
Sbjct: 145 ISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 26.9 bits (59), Expect = 4.6
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 159 VVPPSIIDKDTSTDLVVREQANVTLNCKAQGY-PEPY-VMWRREDGANLS 206
PP++ +S D + L C GY P + W DG +
Sbjct: 5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLE-DGQVMD 53
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 26.1 bits (58), Expect = 4.9
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 79 RISLTYNDHRSWF-LNIKNVQESDRGWYMCQVNTNPRISLT 118
R ++ +N L+I + Q D Y C + N
Sbjct: 59 RFTIFFNKREKKLSLHIADSQPGDSATYFCAASANSGTYQR 99
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 26.2 bits (58), Expect = 5.0
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 127 LNIKNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIIDKDTSTDLVVREQ 178
+NI + + +D G Y+C + P I++ +LVV E+
Sbjct: 75 MNILDTRRNDSGIYLCGAISLH------------PKLKIEESPGAELVVTER 114
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 25.7 bits (57), Expect = 6.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 173 LVVREQANVTLNCKAQGYPEPYVMW 197
+V V L C + P++ W
Sbjct: 11 RLVPRGQAVNLRCILKNSQYPWMSW 35
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 24.8 bits (55), Expect = 6.8
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 129 IKNVQESDRGWYMCQVNTDPMRSRQG-----YLQVVVPPS 163
+ +++ + W N ++G YL+ V PS
Sbjct: 32 VFVLKKGNDNWATVMFN-----GQKGLVPCNYLEPVSGPS 66
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 26.7 bits (58), Expect = 7.4
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 157 QVVVPPSIIDKDTSTDLVVREQANVTLNCKAQGYPEPYVMWRR 199
Q+ P K D V+ +++T C +Q ++
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHT 234
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 25.6 bits (57), Expect = 7.4
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 181 VTLNCKA-QGYPEPYVMWRREDGAN 204
TL C P +MW R GA
Sbjct: 26 ATLRCAMTSLIPVGPIMWFRGAGAG 50
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 26.1 bits (57), Expect = 7.6
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 114 RISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQ-----------GYLQVVVPP 162
+ S+ D + L I+ D Y C + + Q L+ V PP
Sbjct: 65 QFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPP 124
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQGY 190
+ + S + TL C A G+
Sbjct: 125 EVAVFEPSEA-EISHTQKATLVCLATGF 151
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 26.1 bits (57), Expect = 8.3
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 113 PRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTDPMRSRQGY----------LQVVVPP 162
+ + + R L+I++ Q D G Y C +T + QV V P
Sbjct: 59 LKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP 118
Query: 163 SIIDKDTSTDLVVREQANVTLNCKAQG-YPEP 193
+ +++ + C + YP+
Sbjct: 119 KSQPPAKPSVFIMKNGT--NVACLVKDFYPKE 148
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 26.0 bits (57), Expect = 8.4
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 173 LVVREQANVTLNCKAQGYPEPYVMW 197
+V V L C + P++ W
Sbjct: 11 RLVPRGQAVNLRCILKNSQYPWMSW 35
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 26.4 bits (58), Expect = 8.6
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 169 TSTDLVVREQANVTLNCKAQGYPEPYVMW 197
+ ++ + +V + C++ + + W
Sbjct: 30 HPSWVISKSGTSVKIECRSLDFQATTMFW 58
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 25.6 bits (55), Expect = 8.7
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 55 QVAWVRVDTQTILSIHHNVITQNPRISLTYNDHRSWFLNIKNVQESDRGWYMCQVNTNPR 114
V W +++ T + + + ++++ + L+ + V +D G Y C N
Sbjct: 43 HVTWCKLNGTTCVKLEDRQTSWKEEKNISF-----FILHFEPVLPNDNGSYRCSANFQSN 97
Query: 115 I 115
+
Sbjct: 98 L 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.425
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,297,763
Number of extensions: 181325
Number of successful extensions: 1928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 818
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)