BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5840
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NLA3|ANO39_ASTPE Nucleoplasmin-like protein ANO39 OS=Asterina pectinifera PE=1 SV=1
Length = 346
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+FL QAV+GANAKEGE +VVE+E F D +K P+ LK G+N +PLD+ PPVT
Sbjct: 42 LFLKQAVLGANAKEGERNVVEIETENFDGDNVKQPLFSLK-LGLNESSPLDIGI-QPPVT 99
Query: 60 FKLVKGSGPIYLFGNHSV 77
F L GSGP++L G H +
Sbjct: 100 FILTAGSGPVFLSGQHMI 117
>sp|P91753|MP62_LYTPI Mitotic apparatus protein p62 OS=Lytechinus pictus PE=2 SV=1
Length = 411
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKL-PIVVLKAAGVNNHAPLDLLFPDPPVT 59
+FL QAV+G NAK+ + +V+EVE + F + + P++ L+ G+N LD+ PPVT
Sbjct: 42 LFLKQAVLGVNAKDDDRNVIEVETINFDGETVIQPLLSLR-LGLNESTNLDIGL-QPPVT 99
Query: 60 FKLVKGSGPIYLFGNHSV 77
FKL GSGP+YL G H++
Sbjct: 100 FKLALGSGPVYLSGQHAL 117
>sp|Q27415|NLP_DROME Nucleoplasmin-like protein OS=Drosophila melanogaster GN=Nlp PE=1
SV=1
Length = 152
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
+ + Q ++GA AKE E +VVEV + +++PI VLKA P D+ F + VTF
Sbjct: 32 LVIKQILLGAEAKENEFNVVEVNTP--KDSVQIPIAVLKAGETRAVNP-DVEFYESKVTF 88
Query: 61 KLVKGSGPIYLFGNH 75
KL+KGSGP+Y+ G++
Sbjct: 89 KLIKGSGPVYIHGHN 103
>sp|P07222|NPM_XENLA Nucleophosmin OS=Xenopus laevis GN=npm1 PE=1 SV=1
Length = 299
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA+AK+ E+HVVE E + + IK+ + LK + V L PPV
Sbjct: 44 LSLRTVSLGASAKD-ELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEITPPVI 101
Query: 60 FKLVKGSGPIYLFGNHSVGTGEPMGEDDDEE 90
+L GSGP+Y+ G H V + DD++E
Sbjct: 102 LRLKSGSGPVYVSGQHLVALEDLESSDDEDE 132
>sp|Q3T160|NPM_BOVIN Nucleophosmin OS=Bos taurus GN=NPM1 PE=2 SV=1
Length = 294
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA AK+ E+HVVE EAM + IK+ + LK + V L PPV
Sbjct: 42 LSLRTVSLGAGAKD-ELHVVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99
Query: 60 FKLVKGSGPIYLFGNHSVG 78
+L GSGP+++ G H V
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118
>sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens GN=NPM1 PE=1 SV=2
Length = 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA AK+ E+H+VE EAM + IK+ + LK + V L PPV
Sbjct: 42 LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99
Query: 60 FKLVKGSGPIYLFGNHSVG 78
+L GSGP+++ G H V
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118
>sp|P13084|NPM_RAT Nucleophosmin OS=Rattus norvegicus GN=Npm1 PE=1 SV=1
Length = 292
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA AK+ E+H+VE EAM + IK+ + LK + V L PPV
Sbjct: 42 LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99
Query: 60 FKLVKGSGPIYLFGNHSVG 78
+L GSGP+++ G H V
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118
>sp|Q61937|NPM_MOUSE Nucleophosmin OS=Mus musculus GN=Npm1 PE=1 SV=1
Length = 292
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA AK+ E+H+VE EAM + IK+ + LK + V L PPV
Sbjct: 42 LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99
Query: 60 FKLVKGSGPIYLFGNHSVG 78
+L GSGP+++ G H V
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118
>sp|P05221|NUPL_XENLA Nucleoplasmin OS=Xenopus laevis PE=1 SV=1
Length = 200
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
+ L +G AK+ E ++VE+ A+ +PI LK + + A + + PPVTF
Sbjct: 45 LALRTVCLGDKAKD-EFNIVEIVTQEEGAEKSVPIATLKPS-ILPMATMVGIELTPPVTF 102
Query: 61 KLVKGSGPIYLFGNH 75
+L GSGP+Y+ G H
Sbjct: 103 RLKAGSGPLYISGQH 117
>sp|P16039|NPM_CHICK Nucleophosmin OS=Gallus gallus GN=NPM1 PE=2 SV=1
Length = 294
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
+ L +GA AK+ E+HVVE EA+ + + K+ + LK + V L PP
Sbjct: 44 LSLRTVTLGAGAKD-ELHVVEAEALDYEGNPTKVVLASLKMS-VQPTVSLGGFEITPPFV 101
Query: 60 FKLVKGSGPIYLFGNHSVG 78
+L GSGP+Y+ G H V
Sbjct: 102 LRLKCGSGPVYVSGQHLVA 120
>sp|Q5RC37|NPM3_PONAB Nucleoplasmin-3 OS=Pongo abelii GN=NPM3 PE=2 SV=3
Length = 180
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 16 EVHVVEVEAMGF-RADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGN 74
E +VVEV A +I +P+ LK + LD PPVTF+L GSGP+ + G
Sbjct: 78 ECNVVEVVARNHDHQEIAVPVANLKLS-CQPMLSLDDFQLQPPVTFRLKSGSGPVRITGR 136
Query: 75 HSVGT 79
H + T
Sbjct: 137 HQIVT 141
>sp|O75607|NPM3_HUMAN Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3
Length = 178
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 16 EVHVVEVEAMGF-RADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGN 74
E +VVEV A +I +P+ LK + LD PPVTF+L GSGP+ + G
Sbjct: 78 ECNVVEVVARNHDHQEIAVPVANLKLS-CQPMLSLDDFQLQPPVTFRLKSGSGPVRITGR 136
Query: 75 HSVGT 79
H + T
Sbjct: 137 HQIVT 141
>sp|O42584|NO29_XENLA Nucleoplasmin-like protein NO29 OS=Xenopus laevis PE=2 SV=1
Length = 183
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 8 IGANAKEGEVHVVEVEAMGFR-ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
+GA AK+ E +VVEV A ++ ++ +P+ LK + + + PVTF+L GS
Sbjct: 55 LGAGAKD-EHNVVEVTAPNYQNKEVTVPLANLKLS-CQPMVNVGYFEIEAPVTFRLTSGS 112
Query: 67 GPIYLFGNHSVGTGEPMGEDDDEES 91
GP+++ G H V + DD++ S
Sbjct: 113 GPVFISGRHYV-----VASDDEDLS 132
>sp|Q86SE8|NPM2_HUMAN Nucleoplasmin-2 OS=Homo sapiens GN=NPM2 PE=1 SV=1
Length = 214
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKA--AGVNNHAPLDLLFPDPPV 58
+ L +G AKE E+H VE+ + D K+ V + + A V + + PPV
Sbjct: 44 LLLHTICLGEKAKE-EMHRVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPV 102
Query: 59 TFKLVKGSGPIYLFGN 74
TF+L GSGP++L G
Sbjct: 103 TFQLRAGSGPVFLSGQ 118
>sp|Q80W85|NPM2_MOUSE Nucleoplasmin-2 OS=Mus musculus GN=Npm2 PE=2 SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVV--LKAAGVNNHAPLDLLFPDPPV 58
+ L +G AKE EV+ VEV + R K PI + LKA+ V + + PPV
Sbjct: 44 LLLSTICLGEKAKE-EVNRVEVLSQEGR---KPPITIATLKAS-VLPMVTVSGIELSPPV 98
Query: 59 TFKLVKGSGPIYLFG 73
TF+L GSGP++L G
Sbjct: 99 TFRLRTGSGPVFLSG 113
>sp|Q9CPP0|NPM3_MOUSE Nucleoplasmin-3 OS=Mus musculus GN=Npm3 PE=2 SV=3
Length = 175
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 16 EVHVVEVEAMGF-RADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGN 74
E +VVEV A +I +P+ L+ + +D PPVTF+L GSGP+ + G
Sbjct: 78 ECNVVEVVARDHDNQEIAVPVANLRLS-CQPMLSVDDFQLQPPVTFRLKSGSGPVRITGR 136
Query: 75 HSV 77
H +
Sbjct: 137 HQI 139
>sp|P12263|FA8_PIG Coagulation factor VIII OS=Sus scrofa GN=F8 PE=2 SV=2
Length = 2133
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 54 PDPPVTFKLVKGSGPIYLFGNHSVGTGEPMG--EDDDEESIDEDFSEEEVD 102
P P V F+ G+ + +H +G G P+G E+D E S+ E+ S E D
Sbjct: 911 PHPQVNFRSQLGAIVLGKNSSHFIGAGVPLGSTEEDHESSLGENVSPVESD 961
>sp|Q7NY13|IF2_CHRVO Translation initiation factor IF-2 OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=infB PE=3 SV=1
Length = 964
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 15 GEVHVVEVEA-MGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPI 69
G+ VEV A MG D L ++L+A + AP+D L V +L KG GP+
Sbjct: 601 GDTQFVEVSAKMGLNIDALLEAILLQAEVLELKAPVDSLAKGIIVEARLDKGRGPV 656
>sp|Q8GZR2|CYF_EUGGR Apocytochrome f, chloroplastic OS=Euglena gracilis GN=petA PE=1
SV=2
Length = 496
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 51 LLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEPMGEDDD 88
LL PDP V K G+ PIY+ GN G P GE +
Sbjct: 341 LLSPDPRVDKKAEFGTLPIYVGGNRGRGQLYPTGEKSN 378
>sp|Q4FMN5|SYY_PELUB Tyrosine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=tyrS PE=3 SV=1
Length = 409
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 65 GSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEILSKNL 111
G PI L G + G+P G+D + ED E+ ++ E + KN
Sbjct: 63 GHQPIVLLGGGTTRIGDPSGKDKTRTILSEDEIEKNINNIEKILKNF 109
>sp|B2GB15|RECA_LACF3 Protein RecA OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
18251) GN=recA PE=3 SV=1
Length = 353
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 4 FQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFP--------- 54
F + I + GE + +G RA IK +V K A A +D+++
Sbjct: 216 FYSTIRMEIRRGEQLKNGTDVIGNRAKIK--VVKNKVAPPFRKAEVDIMYGEGISKTGEL 273
Query: 55 -DPPVTFKLVKGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEILSK 109
D V LV SG Y +GN +G G E+ + F++ E +E+++K
Sbjct: 274 LDMAVEKDLVNKSGAWYSYGNERIGQG--------RENAKQWFADHEDAMNELMNK 321
>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo
abelii GN=AGXT2 PE=2 SV=1
Length = 514
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 26 GFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNH--SVGTGEPM 83
GF+ LP +V A G+ N P+ + P + LVK FG + + G +
Sbjct: 335 GFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPEIAKSLVKRLQHFNTFGGNPMACAIGSAV 394
Query: 84 GEDDDEESIDEDFSE 98
E EE++ E+ E
Sbjct: 395 LEVIKEENLQENSQE 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.138 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,703,437
Number of Sequences: 539616
Number of extensions: 2279156
Number of successful extensions: 18682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 17194
Number of HSP's gapped (non-prelim): 1257
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)