Query psy5840
Match_columns 132
No_of_seqs 104 out of 196
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:25:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xe0_A Nucleophosmin; drosophi 100.0 1.7E-34 5.7E-39 213.0 8.8 77 1-80 34-112 (114)
2 3t30_B Nucleoplasmin-2; beta-b 100.0 1.8E-34 6.1E-39 211.7 7.8 75 1-77 32-109 (110)
3 1k5j_A Nucleoplasmin core; bet 100.0 2.7E-33 9.1E-38 209.2 9.6 76 1-79 45-121 (124)
4 1nlq_A Nucleoplasmin-like prot 100.0 8E-32 2.7E-36 196.6 9.2 75 1-78 32-106 (108)
5 2ayu_A Nucleosome assembly pro 38.7 6.5 0.00022 33.8 0.0 21 20-40 269-290 (417)
6 3lje_A Zebrafish rnase5; angio 29.8 38 0.0013 24.3 2.9 46 30-76 79-124 (130)
7 4aoh_A Angiogenin; hydrolase, 25.3 55 0.0019 23.3 3.1 45 29-74 75-119 (124)
8 3zbv_A Angiogenin-2; hydrolase 20.6 68 0.0023 22.4 2.7 46 29-75 73-118 (121)
9 2zd7_A VPS75, vacuolar protein 17.7 33 0.0011 27.3 0.6 22 84-105 222-243 (264)
10 2vq9_A RNAse 1, RNAse ZF-3E; n 17.5 1E+02 0.0035 22.8 3.2 47 30-77 102-148 (148)
No 1
>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A
Probab=100.00 E-value=1.7e-34 Score=212.97 Aligned_cols=77 Identities=38% Similarity=0.661 Sum_probs=71.2
Q ss_pred CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceecc-CccCCCCCeEEEEEecccceEeeeceeee
Q psy5840 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPL-DLLFPDPPVTFKLVKGSGPIYLFGNHSVG 78 (132)
Q Consensus 1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~L-dl~f~~pPVtF~L~~GSGPVhIsGqhlv~ 78 (132)
|+|||||||++|| ||+|||||++|||++ ++++|||+||+| ++||++| |+.| +|||||+|++|||||||||||+++
T Consensus 34 L~l~~~~LG~~AK-dE~nvVEve~~~~~g~~ikv~la~Lk~s-~~p~v~L~~le~-~ppVtF~L~~GsGPVhisGqh~v~ 110 (114)
T 1xe0_A 34 LSLRTVSLGASAK-DELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEI-TPPVILRLKSGSGPVYVSGQHLVA 110 (114)
T ss_dssp EEEEEEEECTTCC-SSCEEEEEEEECTTSCEEEEEEEEEBTT-TBCEEEEEEEEE-CSCEEEEEEESCCCEEEEEEEEEC
T ss_pred EEEEEEEcCCCcC-CCceEEEEEecCCCCCcceEEEEEEcCC-CcceEEeCCcEE-CCCEEEEEEEcCCCEEEEeEEEEE
Confidence 6899999999999 899999999999986 999999999999 9999999 5556 699999999999999999999998
Q ss_pred ec
Q psy5840 79 TG 80 (132)
Q Consensus 79 ~~ 80 (132)
++
T Consensus 111 ~~ 112 (114)
T 1xe0_A 111 LE 112 (114)
T ss_dssp --
T ss_pred Ee
Confidence 65
No 2
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0
Probab=100.00 E-value=1.8e-34 Score=211.68 Aligned_cols=75 Identities=32% Similarity=0.454 Sum_probs=65.4
Q ss_pred CeeeeeecCCCCCCCceEEEEEEe--cccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceee
Q psy5840 1 MFLFQAVIGANAKEGEVHVVEVEA--MGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSV 77 (132)
Q Consensus 1 L~Lr~vcLGa~AK~dE~nvVEvea--~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv 77 (132)
|+|||||||++|| ||+|||||++ |+|++ ++++||||||+| ++||++|+++.++|||||||++|||||||||||++
T Consensus 32 L~Lr~v~LG~~AK-dE~nvVEve~~~~~~~~~~i~v~lAtLk~s-~~p~vsl~g~ei~pPVtf~L~~GSGPV~isGqh~~ 109 (110)
T 3t30_B 32 LLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIASLQAS-VLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERY 109 (110)
T ss_dssp EEEEEEEECTTCC-SSCEEEEEECC--------CCEEEEEEBTT-TBCEEEEEEEEECSSEEEEEEESCCCEEEEEEEEC
T ss_pred EEEEEEEeCCCcc-cceeEEEEEeccccCCCCceeEEEEEEecc-ccccEEcCCeEeCCCEEEEEEecCCCEEeeeeeec
Confidence 6899999999999 8999999999 56775 899999999999 99999987666689999999999999999999986
No 3
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J
Probab=100.00 E-value=2.7e-33 Score=209.20 Aligned_cols=76 Identities=34% Similarity=0.549 Sum_probs=68.8
Q ss_pred CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeeee
Q psy5840 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGT 79 (132)
Q Consensus 1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~~ 79 (132)
|+|||||||++|| ||+|||||++ ||++ ++++|||+||++ ++||++|+++.++|||||+|++|||||||+|||+++.
T Consensus 45 L~L~~~~LG~~AK-dE~nVVEve~-n~~g~~ikv~latLk~s-~~p~vsl~g~e~~pPVtF~L~~GSGPVhisGqhlv~~ 121 (124)
T 1k5j_A 45 LALRTVCLGDKAK-DEFHIVEIVT-QEEGAEKSVPIATLKPS-ILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVAME 121 (124)
T ss_dssp EEEEEEEECTTSC-SSCEEEEEEE-CCC---EEEEEEEEBTT-TBCEEECCSCEECSCEEEEEEECCCCEEEEEEEEC--
T ss_pred EEEEEEEcCCCcC-CcceEEEEEe-CCCCCccEEEEEEEccc-ccccEEeCCceeCCCEEEEEEEcCCCeEEEeEEEEEe
Confidence 6899999999999 8999999999 9986 999999999999 9999999766668999999999999999999999874
No 4
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1
Probab=99.97 E-value=8e-32 Score=196.59 Aligned_cols=75 Identities=41% Similarity=0.685 Sum_probs=70.5
Q ss_pred CeeeeeecCCCCCCCceEEEEEEecccCCCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeee
Q psy5840 1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVG 78 (132)
Q Consensus 1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~ 78 (132)
|+|||||||++||+||+|||||++ |++++++||||||+| ++||++||+.|.+|||||+|++|||||||||||+++
T Consensus 32 L~L~~a~LG~~aK~dE~~vVev~~--~~~~~kv~LatLk~~-~~~~~~l~l~f~~~pVtf~L~~GsGPVhisG~h~~~ 106 (108)
T 1nlq_A 32 LVIKQILLGAEAKENEFNVVEVNT--PKDSVQIPIAVLKAG-ETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNIKD 106 (108)
T ss_dssp EEEEEEEECTTSCBTCEEEEEEEE--GGGTEEEEEEEEEBT-TBSEECCCEEEESSCEEEEEEESCCCEEEEEEEECC
T ss_pred EEEEEEEcCCCccCCCcEEEEEEe--CCCCcEEEEEEECCC-CcceEecceEEeCCCEEEEEEecCCCEEEEeEEEec
Confidence 689999999999988999999999 566999999999999 999999998886699999999999999999999874
No 5
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=38.71 E-value=6.5 Score=33.81 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=15.1
Q ss_pred EEEEecccCC-CeeeEEEEeec
Q psy5840 20 VEVEAMGFRA-DIKLPIVVLKA 40 (132)
Q Consensus 20 VEvea~~~~~-~ikv~IAtLk~ 40 (132)
.+.+..+++. ...+|..+.+.
T Consensus 269 ~egt~I~WK~~GknlT~k~~kk 290 (417)
T 2ayu_A 269 AEGCEISWKDNAHNVTVDLEMR 290 (417)
T ss_dssp EEECCCCBSCTTTCTTEEEEEC
T ss_pred ccCcceeeecCCCCcchhhhhh
Confidence 5677778877 77777777654
No 6
>3lje_A Zebrafish rnase5; angiogenins, FISH rnases, hydrolase; 1.80A {Danio rerio} SCOP: d.5.1.0
Probab=29.82 E-value=38 Score=24.30 Aligned_cols=46 Identities=7% Similarity=-0.063 Sum_probs=28.4
Q ss_pred CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeecee
Q psy5840 30 DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHS 76 (132)
Q Consensus 30 ~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhl 76 (132)
+.++|.|.|+.+...|.+.-......-.+.+.- .|..|||+-|..+
T Consensus 79 ~~~lT~C~Lt~g~~~P~C~Y~~~~~~k~iiVaC-~~~~PVHfd~~~~ 124 (130)
T 3lje_A 79 PFPVVTCKLKSGNRRPNCQYRGTSSTRYIVLGC-DKGWPVHYDEGII 124 (130)
T ss_dssp CEEEEEEEEEECSBTTCCEEEEEEEEECCEEEE-ETTEEEEECCC--
T ss_pred ccEeEEEEeCCCCcCCCCccccEeccceEEEEc-cCCcCeeeeeeEE
Confidence 789999999876344555443222223445554 3568999999764
No 7
>4aoh_A Angiogenin; hydrolase, angiogenesis, neovascularisation, amyotropic late sclerosis, ALS, motor neuron disease; HET: TAR TLA; 1.04A {Homo sapiens} PDB: 1a4y_B 1ang_A 1awz_A 2ang_A* 4ahm_A* 4ahh_A* 1b1i_A* 1h0d_C 1h52_A 1hby_A 1b1e_A* 4ahf_A 4ahk_A* 4ahg_A* 4ahj_A* 4ahn_A 4ahd_A 4ahi_A 4ahe_A* 1un4_A* ...
Probab=25.26 E-value=55 Score=23.33 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=27.8
Q ss_pred CCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeec
Q psy5840 29 ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGN 74 (132)
Q Consensus 29 ~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGq 74 (132)
.+.++|.|.|+.|...|.+.-...-..-.|.+.- .|..|||+-+.
T Consensus 75 ~~~~iT~C~lt~gs~~P~C~Y~~~~~~~~iiVaC-e~~~PVH~d~~ 119 (124)
T 4aoh_A 75 SSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVAC-ENGLPVHLDQS 119 (124)
T ss_dssp SCEEEEEEEEESSCSSSSCEEEEEEEEECCEEEE-ETTEEEEECGG
T ss_pred CceEEEEEEecCCCcCCCCcccceeeeeeEEEEe-cCCcCeeeeeE
Confidence 3789999999987445544332221122455555 46789998664
No 8
>3zbv_A Angiogenin-2; hydrolase, ribonuclease A; 1.64A {Mus musculus} PDB: 3zbw_A
Probab=20.65 E-value=68 Score=22.35 Aligned_cols=46 Identities=4% Similarity=-0.063 Sum_probs=28.3
Q ss_pred CCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeece
Q psy5840 29 ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNH 75 (132)
Q Consensus 29 ~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqh 75 (132)
.+.++|.|.|..+...|.+.-...-..-.|.+.- .|..|||+-|-.
T Consensus 73 ~~~~lT~C~lt~g~~~p~C~Y~~~~~~~~i~VaC-~~~~PVH~d~~~ 118 (121)
T 3zbv_A 73 SHFQVTTCTHKGRSPRPPCRYRASKGFRYIIIGC-ENGWPVHFDESF 118 (121)
T ss_dssp SCEEEEEEEECSSCSSSSCCEEEEEEEECCEEEE-ETTEEEEECCSC
T ss_pred CceEeEEEEECCCCcCCCCccccEeccceEEEEc-CCCcCeeeeeee
Confidence 4889999999986234444433222223455555 356899997743
No 9
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=17.72 E-value=33 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCCCcccccccccccccchhh
Q psy5840 84 GEDDDEESIDEDFSEEEVDESE 105 (132)
Q Consensus 84 ee~dd~e~eee~~~~ee~~e~~ 105 (132)
+..|+++++|.++++|++|+++
T Consensus 222 d~~~~~~d~e~~~e~e~~d~~~ 243 (264)
T 2zd7_A 222 DLEDEEGESGLSADGDSEDDDG 243 (264)
T ss_dssp TTCC------------------
T ss_pred ccccCccccccccccccccccc
No 10
>2vq9_A RNAse 1, RNAse ZF-3E; nuclease, evolution, hydrolase, zebrafish, polymorphism, endonuclease, ribonucleases; 1.85A {Danio rerio}
Probab=17.53 E-value=1e+02 Score=22.79 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceee
Q psy5840 30 DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSV 77 (132)
Q Consensus 30 ~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv 77 (132)
+.++|.|.|+.+...|.+.-...-..-.|.+.- .+.-|||+-|.-++
T Consensus 102 ~~~iT~C~Lt~gs~~P~C~Y~tt~~~k~iiVaC-e~~vPVH~d~~~~~ 148 (148)
T 2vq9_A 102 QFTVITCTLRSGERHPNCRYRGKESSRKIVVAC-EGEWPAHYERGVIV 148 (148)
T ss_dssp CEEEEEEEEEECSBTTCCEEEEEEEEEEEEEEE-ETTEEEEEEEEECC
T ss_pred ceEeEEEEcCCCCCCCCCcccceeccceEEEEc-cCCCCeEEeEEEeC
Done!