RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5840
         (132 letters)



>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId:
           8355]}
          Length = 105

 Score = 82.1 bits (203), Expect = 3e-22
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 2   FLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFK 61
            L    +G  AK+ E H+VE+      A+  +PI  LK   +   A +  +   PPVTF+
Sbjct: 32  ALRTVCLGDKAKD-EFHIVEIVTQEEGAEKSVPIATLKP-SILPMATMVGIELTPPVTFR 89

Query: 62  LVKGSGPIYLFGNH 75
           L  GSGP+Y+ G H
Sbjct: 90  LKAGSGPLYISGQH 103


>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 108

 Score = 81.3 bits (201), Expect = 7e-22
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 2   FLFQAVIGANAKEGEVHVVEVEAMGFR-ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
            L    +GA+AK+ E+HVVE E + +    IK+ +  LK   V     L      PPV  
Sbjct: 33  SLRTVSLGASAKD-ELHVVEAEGINYEGKTIKIALASLKP-SVQPTVSLGGFEITPPVIL 90

Query: 61  KLVKGSGPIYLFGNHSV 77
           +L  GSGP+Y+ G H V
Sbjct: 91  RLKSGSGPVYVSGQHLV 107


>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1,
           Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 105

 Score = 68.8 bits (168), Expect = 5e-17
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 5   QAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVK 64
           Q ++GA AKE E +VVEV        +++PI VLKA G       D+ F +  VTFKL+K
Sbjct: 34  QILLGAEAKENEFNVVEVNTPK--DSVQIPIAVLKA-GETRAVNPDVEFYESKVTFKLIK 90

Query: 65  GSGPIYLFGNH 75
           GSGP+Y+ G++
Sbjct: 91  GSGPVYIHGHN 101


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 25.1 bits (55), Expect = 3.1
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 56  PPVTFKLVKGSGPIY 70
           P V+F+       + 
Sbjct: 490 PLVSFRYEDQGPLVE 504


>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense)
          [TaxId: 15957]}
          Length = 94

 Score = 24.3 bits (53), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 56 PPVTFKLVKGSGPIYL 71
          P VTF + KGS   +L
Sbjct: 2  PKVTFTVEKGSNEKHL 17


>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
           {Soybean (Glycine max) [TaxId: 3847]}
          Length = 87

 Score = 23.4 bits (50), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 86  DDDEESIDEDFSEEEVDE 103
           DDD++ + E  SEEE+  
Sbjct: 7   DDDDKHMAERLSEEEIGG 24


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 23.7 bits (51), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 64  KGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDE 103
            G  P +   N +   G   G+DD+ +  D    +E++D+
Sbjct: 105 YGELPEHAKINETDTFGP--GDDDEIQFDDIGDDDEDIDD 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,751
Number of extensions: 21646
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 15
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)