RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5844
(442 letters)
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 690 bits (1783), Expect = 0.0
Identities = 221/347 (63%), Positives = 284/347 (81%), Gaps = 1/347 (0%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCG 110
++E ++ GK ++ +Y +D+ ++TLRY AG+ADKI G+TIP++G+FF YTR EPVGVCG
Sbjct: 105 TMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCG 164
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPG 170
QIIPWNFPLLM WKI PAL+ GNT+V+KPAEQTPLTAL +G+LI EAG P GVVNIVPG
Sbjct: 165 QIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPG 224
Query: 171 YG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADL 229
YG AGAA+ H VDKVAFTGSTEVGKL+++ +G SNLKR +LELGGKSP I+FADADL
Sbjct: 225 YGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADL 284
Query: 230 DAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGP 289
D AVE AH G+F++ GQCC A SR FV+++IYDEFV RS ERAK+ +G+P V QGP
Sbjct: 285 DNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGP 344
Query: 290 QIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGP 349
QIDKEQ +KIL+ IESGK +GA+L GGG G+KG+++QPTVF++V DDM+IA+EEIFGP
Sbjct: 345 QIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGP 404
Query: 350 VQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
VQQ+++F S+++VI+RANN+ YGL+A +FT D+DK V+ L++GT
Sbjct: 405 VQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGT 451
Score = 45.2 bits (108), Expect = 3e-05
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 21 SAAAVPKPITKPKIEHTQLFINNEFVNAQS--SLETLD 56
+ VP P+T + ++T++FINNE+ ++ S +
Sbjct: 5 AMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFN 42
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 689 bits (1781), Expect = 0.0
Identities = 244/347 (70%), Positives = 289/347 (83%), Gaps = 1/347 (0%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCG 110
+LETLDNGKPY +SY VD++ L+ LRYYAG+ADK HGKTIPI+GDFF+YTRHEPVGVCG
Sbjct: 104 ALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCG 163
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPG 170
QIIPWNFPLLM AWK+ PALATGN +V+K AEQTPLTAL V LI EAG P GVVNIVPG
Sbjct: 164 QIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPG 223
Query: 171 YG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADL 229
+G AGAA+ H VDKVAFTGSTE+G+++Q +G+SNLKR TLELGGKSPNII +DAD+
Sbjct: 224 FGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADM 283
Query: 230 DAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGP 289
D AVE AHF LFFN GQC CAGSRTFVQ+ IYDEFV RS RAK R VG+PFD EQGP
Sbjct: 284 DWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGP 343
Query: 290 QIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGP 349
Q+D+ Q KIL +I +GK +GA+L+ GGG A D+G+++QPTVF +V+D M IA+EEIFGP
Sbjct: 344 QVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGP 403
Query: 350 VQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
V Q+++F +IEEV+ RANNS YGLAAAVFTKDLDK NY++Q L+AGT
Sbjct: 404 VMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGT 450
Score = 46.0 bits (110), Expect = 2e-05
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 21 SAAAVPKPITKPKIEHTQLFINNEFVNAQS--SLETLD 56
+ AVP P +P++ Q+FINNE+ +A S + T++
Sbjct: 4 ATQAVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVN 41
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 680 bits (1757), Expect = 0.0
Identities = 167/353 (47%), Positives = 235/353 (66%), Gaps = 7/353 (1%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPIN----GDFFAYTRHEPV 106
++E LD G Y ++ V S++T RY+AG+ DKI G TIPIN T+ EPV
Sbjct: 120 TIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPV 179
Query: 107 GVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVN 166
GVCG +IPWN+PL+ML+WK A LA GNT+V+KPA+ TPLTAL L +AGIP+GVVN
Sbjct: 180 GVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVN 239
Query: 167 IVPGYGD-AGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFA 225
I+PG G G L HP V K+ FTGSTEVGK + + SN+K+ +LELGGKSP IIFA
Sbjct: 240 ILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFA 299
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNV 285
D DL+ AV+ +FFN G+ C A R FV+++I+++FV + E ++ +G+P + +
Sbjct: 300 DCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDT 359
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 345
GPQ + + K++E+ + G +GA LV GG + GF+ QPTVF +V D M IA+EE
Sbjct: 360 NHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEE 419
Query: 346 IFGPVQQLIRFSS--IEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
FGP+ + RF+ ++ V+ RAN +++GLA+ VFT+D++K YV+ L+AGT
Sbjct: 420 SFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGT 472
Score = 36.4 bits (85), Expect = 0.016
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 2 LRLRNLALKSSTLGSLKNYSAAAVPKPITKPKIE-HTQLFINNEFVNAQS--SLETLD 56
+R + ++ V K + K ++ QLFI EFV+A+ + T++
Sbjct: 1 MRGSHHHHHTTGEDDESECVINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTIN 58
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 676 bits (1748), Expect = 0.0
Identities = 164/352 (46%), Positives = 219/352 (62%), Gaps = 5/352 (1%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVC 109
++LETLD GKP + SVD+ L YYAG I G+ IP+ F YTR EP+GV
Sbjct: 87 AALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVV 146
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
I WN+P+ + WK APALA GN ++ KP+E TPLTAL + + EAG+P+GV N++
Sbjct: 147 AGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLT 206
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G G + G L +HP ++K++FTG T GK V + +S+LK T+ELGGKSP IIF DAD
Sbjct: 207 GSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDAD 266
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
LD A + A FF+ GQ C G+R F+ + F A+ ER +R +GDP D N G
Sbjct: 267 LDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFG 326
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMKIARE 344
P + M+ +L +IESGK+Q A+L+ GG R D KG YV PTVF + RDDM I RE
Sbjct: 327 PLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVRE 386
Query: 345 EIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
EIFGPV ++ + +E I RAN+++YGLAA V T+DL + + L AG
Sbjct: 387 EIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGI 438
Score = 36.3 bits (85), Expect = 0.020
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 32 PKIEHTQLFINNEFVNAQS 50
+ E +L+I +V A S
Sbjct: 2 ARFEEQKLYIGGRYVEASS 20
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 665 bits (1718), Expect = 0.0
Identities = 152/353 (43%), Positives = 213/353 (60%), Gaps = 8/353 (2%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVC 109
+ LE ++NGK + D++ + + + YYAG A + G+ I + G FAYTR EP+GVC
Sbjct: 101 AKLEVINNGKTITEAE-YDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRREPLGVC 159
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
I+ WN+P ++ AWK APALA GN +V KP+ TP+T + + + EAG+P G+VN+V
Sbjct: 160 AGILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQ 219
Query: 170 GYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADL 229
G + G+ L HP V KV+FTGS GK V + S A +K TLELGGKSP +IF D +L
Sbjct: 220 GGAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMS-AKTVKHVTLELGGKSPLLIFKDCEL 278
Query: 230 DAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGP 289
+ AV GA F GQ C G+R FVQ I +F+ +R K VGDP G
Sbjct: 279 ENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGG 338
Query: 290 QIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFANVRDDMKIAR 343
I K Q+DK+L F+ K +GA+++ GG G+++ P V N RDDM +
Sbjct: 339 LISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVK 398
Query: 344 EEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
EEIFGPV ++ F + EEV++RANN+ +GLA+ VFT+D+ + + V L AGT
Sbjct: 399 EEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGT 451
Score = 33.7 bits (78), Expect = 0.11
Identities = 2/30 (6%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 22 AAAVPKPIT-KPKIEHTQLFINNEFVNAQS 50
++P T + + + ++
Sbjct: 4 VDSMPSASTGSVVVTDDLNYWGGRRIKSKD 33
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 666 bits (1720), Expect = 0.0
Identities = 162/351 (46%), Positives = 216/351 (61%), Gaps = 6/351 (1%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFA-DKIHGKTIPINGDFFAYTRHEPVGV 108
S+LETLD GKP + D ++ G A ++G IP+ GDF AYT+ P+GV
Sbjct: 95 STLETLDTGKPIQETIVADPTSGADAFEFFGGIAPSALNGDYIPLGGDF-AYTKRVPLGV 153
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIV 168
C I WN+P + WK APAL GN +V KP+E TPL AL + ++ EAG+P+G+ N++
Sbjct: 154 CVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVI 213
Query: 169 PGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G D G LV HP V KV+ TGS G+ V + A +LK T+ELGGKSP I+F DAD
Sbjct: 214 QGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAAAA-AGHLKHVTMELGGKSPMIVFDDAD 272
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
+++AV GA G F++ GQ C G+R FVQ F+ R + +GDP D G
Sbjct: 273 IESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDYATHLG 332
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGG---RAGDKGFYVQPTVFANVRDDMKIAREE 345
P + K Q +K+L +IE GK++GA L+ GGG +G YVQPTVFA+V DDM IAREE
Sbjct: 333 PLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREE 392
Query: 346 IFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
IFGPV ++ F +EV+ RAN +++GLA VFT DL + + V GL AGT
Sbjct: 393 IFGPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGT 443
Score = 32.2 bits (74), Expect = 0.38
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 22 AAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN 62
+ P+ FI+ ++V + ++ P
Sbjct: 2 VMTIATPLKAQ--PKASHFIDGDYVEDNTG-TPFESIFPAT 39
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 661 bits (1708), Expect = 0.0
Identities = 143/349 (40%), Positives = 210/349 (60%), Gaps = 5/349 (1%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIP-INGDFFAYTRHEPVGVC 109
+E+L+ GKP + ++ + Y AG A + G+T I D EPVGV
Sbjct: 107 LIESLEVGKPIAQARG-EIGFCADLWSYAAGQARALEGQTHNNIGDDRLGLVLREPVGVV 165
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
G I PWNFP ++ + ++ A+ +G T+VLKP+E T T++ + L EAGIP+GV N+V
Sbjct: 166 GIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVT 225
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
GYG AG L + P VD VAFTGS VG + + + A +KR LELGGK P I+FADAD
Sbjct: 226 GYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGEIA-ARTVKRVGLELGGKGPQIVFADAD 284
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
LDAA +G +G++ N GQCC +GSR VQ+ I D + R + +++ GDP + + G
Sbjct: 285 LDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFGDPLNERTKIG 344
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDMKIAREEIF 347
I + +K+ ++ +G + GA+L+ GG R G + G Y PTVFA V DM IAREEIF
Sbjct: 345 AMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIF 404
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GPV + F + +E + AN +++GL+A+V++ +L+ + +RAG
Sbjct: 405 GPVLSTLTFKTADEAVALANATEFGLSASVWSTNLETALQTIRRIRAGR 453
Score = 32.9 bits (76), Expect = 0.21
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 19 NYSAAAVPKPITKPKIEHTQLFINNEFVNAQS--SLETLD 56
N+ A P + K Q+ ++ + V+A S +++ +
Sbjct: 6 NFIAPDSNDPRLRIKSR-YQMLVDGKSVDAASGSTIDRVS 44
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 660 bits (1704), Expect = 0.0
Identities = 154/352 (43%), Positives = 212/352 (60%), Gaps = 8/352 (2%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPIN-GDFFAYTRHEPVGVC 109
LETLD GK SY D++ Y+AG ADK G+ I D + EPVGV
Sbjct: 116 RLETLDTGKTLEESY-ADMDDIHNVFMYFAGLADKDGGEMIDSPIPDTESKIVKEPVGVV 174
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
QI PWN+PLL +WKIAPALATG ++V+KP+E TPLT + V L+ E G P+G +N++
Sbjct: 175 TQITPWNYPLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLIL 234
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G G + G + H VD V+FTG E GK + + + A+N+ LELGGK+PNIIF DAD
Sbjct: 235 GAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMKNA-ANNVTNIALELGGKNPNIIFDDAD 293
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
+ AV+ A G +F+ GQ C AGSR VQ++I D+F +R K+ +G+ FD + E G
Sbjct: 294 FELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMG 353
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVRDDMKIARE 344
P I E +KI +++ K++GA + GG R G + +PTV N M+I +E
Sbjct: 354 PVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQE 413
Query: 345 EIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
E+FGPV + F + +E I+ AN+S YGLA AVF+KD+ K V L+ GT
Sbjct: 414 EVFGPVVTVEGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGT 465
Score = 39.5 bits (93), Expect = 0.002
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 9 LKSSTLGSLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQS--SLETLD 56
S+ L + + K + +I+ E+V + + + + ++
Sbjct: 5 HHHSSGVDLGTENLYFQSNAMELLKHLSQRQYIDGEWVESANKNTRDIIN 54
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 658 bits (1701), Expect = 0.0
Identities = 148/353 (41%), Positives = 213/353 (60%), Gaps = 9/353 (2%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI----NGDFFAYTRHEPV 106
LE++D GKP + + D++ YYA A+K+ + F ++ EP+
Sbjct: 94 KLESIDCGKPLDEAA-WDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPI 152
Query: 107 GVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVN 166
GV G I PWN+P+LM WK+APALA G +LKP+E LT L +G + E G+P GV+N
Sbjct: 153 GVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLN 212
Query: 167 IVPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFA 225
I+ G G +AGA L HP VDKVAFTGS+ G + + A +K +LELGGKSP ++F
Sbjct: 213 ILTGLGPEAGAPLATHPDVDKVAFTGSSATGSKIMTAA-AQLVKPVSLELGGKSPLVVFE 271
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNV 285
D DLD A E A FG F+ GQ C A SR + ++I EF+ R + K + DP +
Sbjct: 272 DVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIKNIKISDPLEEGC 331
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDDMKIAR 343
GP + + Q +KIL+F+ + KS+GA ++ GG R KGF+++PT+ +V +M+I R
Sbjct: 332 RLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWR 391
Query: 344 EEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
EE+FGPV + FS+ EE I+ AN++ YGL AAV + DL++ VT+ +AG
Sbjct: 392 EEVFGPVLCVKTFSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGI 444
Score = 35.6 bits (83), Expect = 0.033
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 32 PKIEHTQLFINNEFVNAQS--SLETLD 56
I QLFIN ++ + ++
Sbjct: 3 IPIPTRQLFINGDWKAPVLNKRIPVIN 29
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 646 bits (1669), Expect = 0.0
Identities = 133/349 (38%), Positives = 202/349 (57%), Gaps = 5/349 (1%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIP-INGDFFAYTRHEPVGVC 109
LE+ + GKP + +++ ++ + R++AG A ++G + R +P+GV
Sbjct: 104 ELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVV 163
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
I PWN+PL+M AWK+APALA GN +VLKP+E TPLTAL + L + P GVVNI+
Sbjct: 164 ASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVNILF 222
Query: 170 GYGD-AGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G G G L HP V V+ TGS G+ + + AS++KRT +ELGGK+P I+F DAD
Sbjct: 223 GRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHT-ASSIKRTHMELGGKAPVIVFDDAD 281
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
++A VEG ++N GQ C A R + Q IYD V + G G P D + E G
Sbjct: 282 IEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELG 341
Query: 289 PQIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
P ++++ + +E K+ G +++ GG + G+Y PT+ A D I ++E+F
Sbjct: 342 PLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVF 401
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GPV + F + E+V+ AN+S YGLA++V+TKD+ + + V+ L+ G
Sbjct: 402 GPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGC 450
Score = 36.4 bits (85), Expect = 0.020
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 19 NYSAAAVPKPITKPKIEHTQLFINNEFVNAQ-SSLETLD 56
++ K + +L IN E V+ + +
Sbjct: 6 HHHHLESTSLYKKAGLMQHKLLINGELVSGEGEKQPVYN 44
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 644 bits (1665), Expect = 0.0
Identities = 138/349 (39%), Positives = 200/349 (57%), Gaps = 5/349 (1%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTI-PINGDFFAYTRHEPVGVC 109
+LE L+ GKP N + ++ + R++AG +H + R +P+G+
Sbjct: 106 ALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLHAPAAGEYLPGHTSMIRRDPIGIV 165
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
G I PWN+PL+M+AWK+APA+ GNT+V KP+EQTPLTAL + LIA+ +PEGVVN++
Sbjct: 166 GSIAPWNYPLMMMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADI-LPEGVVNVIT 224
Query: 170 GYGD-AGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G G+ G AL+ HP V V+ TG GK V + A +KRT LELGGK+P I++ DAD
Sbjct: 225 GRGETVGNALINHPKVGMVSITGDIATGKKVLAAA-AKTVKRTHLELGGKAPVIVYGDAD 283
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
L+A V G ++N GQ C A R + + IY++ VA D E G
Sbjct: 284 LEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEKLVADLTSAVSTIRYNLDDDTENEIG 343
Query: 289 PQIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
P I + Q D++ F+E Q ++ GG D+GF+ QPTV A + +I R E+F
Sbjct: 344 PLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVF 403
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GPV + RF+ ++ + AN+SDYGLA++V+TKD+ K L+ G
Sbjct: 404 GPVVSVTRFTGKDDAVAWANDSDYGLASSVWTKDISKAMRAASRLQYGC 452
Score = 32.1 bits (74), Expect = 0.37
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 21 SAAAVPKPITK-PKIEHTQLFINNEFVNAQS-SLETLD 56
S + + TQL I + F L+
Sbjct: 9 SGVDLGTENLYFQSMMDTQLLIGSRFEAGTEAEEHILN 46
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 645 bits (1665), Expect = 0.0
Identities = 154/356 (43%), Positives = 220/356 (61%), Gaps = 13/356 (3%)
Query: 51 SLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADK-IHGKTIPINGDFFAYTRHEPVGVC 109
+E LD G+ + V + +YA +A+ + +T P++ D+ YT P G
Sbjct: 108 VMECLDAGQVLRIVR-AQVARAAENFAFYAEYAEHAMEDRTFPVDRDWLYYTVRVPAGPV 166
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
G I PWN PL++ W+IAPALA GNT+VLKPAE +P TA + ++ EA +P GV N+V
Sbjct: 167 GIITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQ 226
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G+G +AGAALV HP V + TG TE GK+V + + A +LKR + ELGGKSP ++FADAD
Sbjct: 227 GFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNA-ADHLKRLSPELGGKSPALVFADAD 285
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
L+ A++ F +F G+ C A SR V++ I+++FV + ERA+ VG P D E G
Sbjct: 286 LERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHPLDPETEVG 345
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--------DKGFYVQPTVFANVRDDMK 340
P I E + ++L ++E+GK +GA+L+ GG RA +G Y+ PTVF + MK
Sbjct: 346 PLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMK 404
Query: 341 IAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
IA+EEIFGPV I F EE + +AN++ YGLAA VFT+DL++ + + L AG
Sbjct: 405 IAQEEIFGPVLVAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGM 460
Score = 36.0 bits (84), Expect = 0.023
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 16 SLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN 62
+ S + + + K FI EFV ++S ET + P
Sbjct: 6 RVAGISWETIEEVRRRLKERPALHFIAGEFVPSESG-ETFPSLDPAT 51
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 591 bits (1526), Expect = 0.0
Identities = 148/347 (42%), Positives = 201/347 (57%), Gaps = 3/347 (0%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
L + G+P + ++ S+ + Y+AG ADK+ + EPVGV G
Sbjct: 93 LLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKVTWTETRTGSYGQSIVSREPVGVVGA 152
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
I+ WN PL + KIAPAL G TIVLKPA +TPLTA A+ + AE G+PEGV+++VPG
Sbjct: 153 IVAWNVPLFLAVNKIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPGG 212
Query: 172 GDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
+ G AL +P +D FTGS+ VG+ V + + A LK TLELGGKS II D DL A
Sbjct: 213 IETGQALTSNPDIDMFTFTGSSAVGREVGRRA-AEMLKPCTLELGGKSAAIILEDVDLAA 271
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
A+ F N GQ C +R + YDE VA VG P D + GP I
Sbjct: 272 AIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQIGPLI 331
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDDMKIAREEIFGP 349
++Q ++ +I G +GA+LV GGGR D GF++QPTVFA+V + M IA+EEIFGP
Sbjct: 332 SEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGP 391
Query: 350 VQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
V +I + + E+ I AN+S YGLA +V+T D+ K ++Q +R GT
Sbjct: 392 VLAIIPYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGT 438
Score = 30.2 bits (69), Expect = 1.5
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 30 TKPKIEHTQLFINNEFVNAQSSLETLD 56
+ E+ +LFI ++ +S + ++
Sbjct: 2 SDSATEYDKLFIGGKWTKPSTS-DVIE 27
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 586 bits (1512), Expect = 0.0
Identities = 127/355 (35%), Positives = 191/355 (53%), Gaps = 9/355 (2%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIH-GKTIPINGDFFAYTRHEPVGV 108
S+ + GKP+ + D ++ L YYA +++ GK I + P+GV
Sbjct: 117 SAWLVHEAGKPWKEAD-ADTAEAIDFLEYYARQMIELNRGKEILSRPGEQNRYFYTPMGV 175
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIV 168
I PWNF L ++ + TGNT+VLKPA TP+ A ++ +AG+P+GV+N V
Sbjct: 176 TVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYV 235
Query: 169 PGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQ-----GSGASNLKRTTLELGGKSPNI 222
PG G + G LV HP + FTGS +VG + + G ++LKR +E+GGK +
Sbjct: 236 PGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVV 295
Query: 223 IFADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFD 282
+ DADLD A E F GQ C AGSR + +YDE + ++ AK TVGDP +
Sbjct: 296 VDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTN 355
Query: 283 LNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIA 342
+ GP ID++ +KI+ +IE GK +G +L+ GG GF++QPT+ A++ + I
Sbjct: 356 RDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIM 414
Query: 343 REEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
+EEIFGPV + + + +E ANN++YGL AV T++ + G L
Sbjct: 415 QEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNL 469
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 5 RNLALKSSTLGSLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLD 56
++ T+ + + A+ + K + L IN E V + +++ +
Sbjct: 7 KHEPFTDFTVEANRKAFEEALGL-VEKELGKEYPLIINGERVTTEDKIQSWN 57
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 577 bits (1490), Expect = 0.0
Identities = 129/349 (36%), Positives = 204/349 (58%), Gaps = 6/349 (1%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
+++ G P +M+ + +R + + + I G+ A ++ +GV G
Sbjct: 108 TISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFSFQEALIEGNEQAILHYDAIGVVGL 167
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
I PWN+P+ + K+ PAL G T+VLKP+E PL+A+ ++ EA +P GV N++ G
Sbjct: 168 ITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGD 227
Query: 172 G-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLD 230
G + G+ L HP ++ ++FTGST GK + + + ++ LKR LELGGK NIIFADAD+D
Sbjct: 228 GANVGSYLSAHPDLEMISFTGSTRAGKDISKNA-SNTLKRVCLELGGKGANIIFADADID 286
Query: 231 AAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQ 290
A++ F+N GQ C A +R V+ IYD+ + + + A++ VG GP
Sbjct: 287 -ALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIGPV 345
Query: 291 IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREEIF 347
+ KEQ DKI + I+SG +GA LV GG ++G+YV+PTVFA+V+ M+I REEIF
Sbjct: 346 VSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIF 405
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GPV L+ F++ +E + AN+++YGL + ++D K + +R+G
Sbjct: 406 GPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGM 454
Score = 32.1 bits (74), Expect = 0.37
Identities = 3/36 (8%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 21 SAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLD 56
+ + +IN + + + L
Sbjct: 10 GTLEAQTQGPGSMLNKRKFYINGLWDDPSTP-HDLY 44
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 571 bits (1474), Expect = 0.0
Identities = 122/356 (34%), Positives = 183/356 (51%), Gaps = 11/356 (3%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPING--DFFAYTRHEPVG 107
+ + GK + + DV ++ + YYA A + + + + + P+G
Sbjct: 117 EATLVYEVGKNWVEAS-ADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLG 175
Query: 108 VCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNI 167
I PWNFP+ + I +A GNT++ KPAE + V + EAG P GVVN
Sbjct: 176 AGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNF 235
Query: 168 VPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQ-----GSGASNLKRTTLELGGKSPN 221
+PG G + GA LV+HP + + FTGS EVG + + G + KR +E GGK+
Sbjct: 236 LPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAI 295
Query: 222 IIFADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPF 281
I+ AD D A EG + GQ C A SR + Y+ + R +RA+R +VG P
Sbjct: 296 IVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG-PA 354
Query: 282 DLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 341
+ N + GP + EQ K+L +IE GK++G LV GG R +G+++ PTVF V +I
Sbjct: 355 EENPDLGPVVSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKARI 413
Query: 342 AREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
A+EEIFGPV +IR E +E AN++ YGL V+++ + + + G L
Sbjct: 414 AQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNL 469
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 566 bits (1462), Expect = 0.0
Identities = 124/349 (35%), Positives = 190/349 (54%), Gaps = 9/349 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
T + G P ++S V + L D + + E +GV G
Sbjct: 90 AITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFEERRGD----DLVVKEAIGVSGL 145
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
I PWNFP + K+A A A G+ +VLKP+E+TP A+ + + + G+P+GV N+V G
Sbjct: 146 ITPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGD 205
Query: 172 G-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLD 230
G G L +HP V ++FTGS G + + + A + K+ +LELGGKSP I+ D D+
Sbjct: 206 GAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKA-AKDFKKVSLELGGKSPYIVLDDVDIK 264
Query: 231 AAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQ 290
A + + N GQ C AG+R V + I D F+A E+ + VG+P + + GP
Sbjct: 265 EAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQVGPI 324
Query: 291 IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREEIF 347
I K+Q D++ +I G +GA+L GG +KG++ +PT+F NV + M IA+EEIF
Sbjct: 325 ISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIF 384
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GPV +I ++ ++E I+ AN++ YGLA V KD + + V + + AGT
Sbjct: 385 GPVMSVITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGT 433
Score = 30.6 bits (70), Expect = 1.3
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 30 TKPKIEHTQLFINNEFVNAQSSLETLD 56
+ ++T+ +IN E+V + S+ ET++
Sbjct: 1 SNAMRDYTKQYINGEWVESNSN-ETIE 26
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 545 bits (1406), Expect = 0.0
Identities = 125/349 (35%), Positives = 185/349 (53%), Gaps = 8/349 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPING-DFFAYTRHEPVGVCG 110
++G + + +++ + + A F ++HG+ P N GV G
Sbjct: 95 WLIKESGSTRSKAN-LEITLAGNITKESASFPGRVHGRISPSNTPGKENRVYRVAKGVVG 153
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIA-EAGIPEGVVNIVP 169
I PWNFPL + +APALA GN +V+KPA TP+T + A I EAG+P GV++ V
Sbjct: 154 VISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVA 213
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLV-QQGSGASNLKRTTLELGGKSPNIIFADA 227
G G + G V H ++FTGST VG+ V + +K LELGG +P ++ ADA
Sbjct: 214 GAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAINGGPMKTVALELGGNAPFVVLADA 273
Query: 228 DLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQ 287
D+DAA + A G F + GQ C + +R V ++DEF+ + E K GDP
Sbjct: 274 DIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLV 333
Query: 288 GPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
GP I+ Q+ + E IE K +GA + G +G V P VF++V DM+IAREEIF
Sbjct: 334 GPVINDSQLSGLKEKIELAKKEGATVQVEGPI---EGRLVHPHVFSDVTSDMEIAREEIF 390
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
GP+ +++ E AN SD+GL+AAV++KD+D+ + +G
Sbjct: 391 GPLISVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQFALQIDSGM 439
Score = 30.6 bits (70), Expect = 1.0
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 26 PKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN 62
T I+ T+ I ++V S N PY+
Sbjct: 2 VVTATFAGIDATKHLIGGQWVEGNSD-RISTNINPYD 37
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 513 bits (1323), Expect = 0.0
Identities = 114/353 (32%), Positives = 171/353 (48%), Gaps = 14/353 (3%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-----NGDFFAYTRHEPV 106
+ ++ GKP + + +V+ ++ LR KI G IP + R EP+
Sbjct: 100 VLVMNAGKPKSAAV-GEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPL 158
Query: 107 GVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVN 166
GV I P+N+PL KI + GN +V+KP+ PL A + +AG P +
Sbjct: 159 GVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIA 218
Query: 167 IVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFAD 226
++ G +V V V+FTGSTEVG+ V + G +K+ +ELGG P I+ D
Sbjct: 219 LLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVGG---VKQYVMELGGGDPAIVLED 275
Query: 227 ADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVE 286
ADLD A + G++ GQ C A + +Y + V +R VGDP D V+
Sbjct: 276 ADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPRDPTVD 335
Query: 287 QGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANVRDDMKIAR 343
GP I +D+++ IE +G +++AGG R G YVQPT A+ DM + +
Sbjct: 336 VGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLG--PTYVQPTFVEAPADRVKDMVLYK 393
Query: 344 EEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
E+F PV + +++ IE AN YGL AAVF +D+ K + L G
Sbjct: 394 REVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGA 446
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 492 bits (1268), Expect = e-172
Identities = 129/352 (36%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI------NGDFFAYTRHEP 105
L + KP + +V + +R+ A A +++G+T+ + A EP
Sbjct: 94 LIMHEVAKPKKSAIG-EVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREP 152
Query: 106 VGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVV 165
+GV I P+N+P+ + A KIAPAL TGNT+V KPA Q L+ + + +A+AG PEG++
Sbjct: 153 LGVVLAISPFNYPVNLAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGII 212
Query: 166 NIVPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIF 224
+V G G G LV+HPG+D + FTG T G+ + + + + LELGGK P I+
Sbjct: 213 QVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISEKAK---MIPVVLELGGKDPAIVL 269
Query: 225 ADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLN 284
DADL G F GQ C A R FVQD++ D+ VA E ++ TVG P D +
Sbjct: 270 DDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQLVANIKELVEQLTVGSPED-D 328
Query: 285 VEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 344
+ P ID++ I I+ GA L++G R +G + PT+ +V M++A E
Sbjct: 329 ADITPVIDEKSAAFIQGLIDDALENGATLLSGNKR---QGNLLSPTLLDDVTPAMRVAWE 385
Query: 345 EIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
E FGPV +IR E I +N SDYGL A++FTKD D+ + + L GT
Sbjct: 386 EPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINIGKHLEVGT 437
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 493 bits (1271), Expect = e-172
Identities = 81/377 (21%), Positives = 142/377 (37%), Gaps = 35/377 (9%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDF----------FAYT 101
+ T ++G N S +VD++ + TL YYA + +G +
Sbjct: 89 IATANSGTTRNDS-AVDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHV 147
Query: 102 RHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGI- 160
GV I +NFP L K APAL +G +++KPA T + A + +AGI
Sbjct: 148 LSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGIL 207
Query: 161 PEGVVNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGAS-NLKRTTLELGGKS 219
P G ++I+ G + L Q D V+FTGS + ++ R ++ +
Sbjct: 208 PPGALSIICG--SSAGLLDQIRSFDVVSFTGSADTAATLRAHPAFVQRGARLNVQADSLN 265
Query: 220 PNIIFADAD-----LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKR 274
I+ ADA D ++ + GQ C A R FV + + + + +
Sbjct: 266 SAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEALKAKLAK 325
Query: 275 RTVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRA-----GDKGFYVQP 329
TVG+P + V G + +EQ + +L I + + + + V P
Sbjct: 326 ITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAP 385
Query: 330 TVF--ANVRDDMKIAREEIFGPVQQLIRFSSI--------EEVIERANNSDYGLAAAVFT 379
+F + + + E+FGPV + + + A L A++++
Sbjct: 386 HLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYS 445
Query: 380 KDLDKTNYVTQGLRAGT 396
D + L
Sbjct: 446 NDDAHLGRLALELADSH 462
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 491 bits (1266), Expect = e-172
Identities = 125/350 (35%), Positives = 195/350 (55%), Gaps = 15/350 (4%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
+ +D GKP + V+VE S+ T + A + + + IP + D +TR EPVG+ G
Sbjct: 79 ILAIDAGKPIKQAR-VEVERSIGTFKLAAFYVKEHRDEVIPSD-DRLIFTRREPVGIVGA 136
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA----GIPEGVVNI 167
I P+NFPL + A KIAPA+ATGN IV P+ + PL + + +I A +P GV N+
Sbjct: 137 ITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNL 196
Query: 168 VPGYGDA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFAD 226
+ G G+ G +V + V+ ++FTGS++VG+L+ + +G K+ LELGG +PNI+ D
Sbjct: 197 LTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG---FKKIALELGGVNPNIVLKD 253
Query: 227 ADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVE 286
ADL+ AV G F GQ C + V ++I D+F+ +AK VG+P D +
Sbjct: 254 ADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTD 313
Query: 287 QGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEI 346
GP I E + + + +E +G +L+ GG R PT+ V D + + E
Sbjct: 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKR---DKALFYPTIL-EVDRDNILCKTET 369
Query: 347 FGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
F PV +IR + EE+I+ AN+++YGL +A+FT D++K+ + L G
Sbjct: 370 FAPVIPIIRTNE-EEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGG 418
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 490 bits (1265), Expect = e-172
Identities = 105/347 (30%), Positives = 153/347 (44%), Gaps = 4/347 (1%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
+ + GKP S + +V + + + G+ D A RH+P GV
Sbjct: 87 VIGEETGKPLWES-ATEVTSMVNKVAISVQAFRERTGEKSGPLADATAVLRHKPHGVVAV 145
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
P+NFP + I PAL GN +V KP+E TP A +AG+P GV+N+V G
Sbjct: 146 FGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGG 205
Query: 172 GDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
+ G AL H G+D + FTGS+ G L+ G K LE+GG +P ++ ADLDA
Sbjct: 206 RETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQPQKILALEMGGNNPLVVEEVADLDA 265
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIY-DEFVARSGERAKRRTVGDPF-DLNVEQGP 289
AV F + GQ C R V + D +AR + VG G
Sbjct: 266 AVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGRFDEQPAPFMGA 325
Query: 290 QIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGP 349
I + +L+ E +GAQ + + D + P + +V + EE FGP
Sbjct: 326 VISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGIL-DVSAVAERPDEEFFGP 384
Query: 350 VQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
+ Q+IR+S I AN + YGLAA + + ++ RAG
Sbjct: 385 LLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGI 431
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 441 bits (1136), Expect = e-153
Identities = 118/352 (33%), Positives = 181/352 (51%), Gaps = 15/352 (4%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPING------DFFAYTRHEP 105
+ + + K Y + S +V + + Y A ++ G+ + A R EP
Sbjct: 85 ILSKEVAKGYKSAVS-EVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREP 143
Query: 106 VGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVV 165
VG+ I P+N+P+ + KIAPAL GN I KP Q ++ L + AEAG+P GV
Sbjct: 144 VGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVF 203
Query: 166 NIVPGYGDA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIF 224
N + G G G +V+H V+ + FTGST +G+ + + +G ++ LELGGK I+
Sbjct: 204 NTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAG---MRPIMLELGGKDSAIVL 260
Query: 225 ADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLN 284
DADL+ + G F GQ C A R V +++ DE V + E+ T+G+P D +
Sbjct: 261 EDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPED-D 319
Query: 285 VEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 344
+ P ID + D + I +GA + R +G + P +F V DM++A E
Sbjct: 320 ADITPLIDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMRLAWE 376
Query: 345 EIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
E FGPV +IR +S+EE IE +N S+YGL A++FT D + + + L GT
Sbjct: 377 EPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGT 428
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 431 bits (1112), Expect = e-149
Identities = 125/347 (36%), Positives = 195/347 (56%), Gaps = 5/347 (1%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCG 110
L + GK ++ V+V ++ + Y A +A + G+ I +GV
Sbjct: 89 LIVEEGGKIQQLAE-VEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTT 147
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPG 170
I+PWNFP ++A K+APAL TGNTIV+KP+E TP A+A ++ E G+P GV N+V G
Sbjct: 148 GILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLG 207
Query: 171 YGDA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADL 229
G+ G L +P V V+ TGS G+ + + A N+ + LELGGK+P I+ DADL
Sbjct: 208 RGETVGQELAGNPKVAMVSMTGSVSAGEKIMATA-AKNITKVCLELGGKAPAIVMDDADL 266
Query: 230 DAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDL-NVEQG 288
+ AV+ N GQ C R +VQ IYD+FV R GE + G+P + ++ G
Sbjct: 267 ELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMG 326
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFG 348
P I+ ++++ + + +GA++ GG KG+Y PT+ +VR +M I EE FG
Sbjct: 327 PLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFG 386
Query: 349 PVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
PV ++ F ++E+ I AN+SDYGL ++++T++L+ +GL+ G
Sbjct: 387 PVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFG 433
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 438 bits (1129), Expect = e-145
Identities = 119/355 (33%), Positives = 181/355 (50%), Gaps = 9/355 (2%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHG-KTIPINGDFFAYTRHEPVGV 108
S+ + L+ GK ++ +Y+ DV ++ L YYA ++ + + + +EP GV
Sbjct: 611 SAWQVLEIGKQWDQAYA-DVTEAIDFLEYYAREMIRLGQPQRVGHAPGELNHYFYEPKGV 669
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIV 168
I PWNFPL + + A+ TGN +V KP+ T + + L EAG+PEGV N
Sbjct: 670 AAVIAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFT 729
Query: 169 PGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQ-----GSGASNLKRTTLELGGKSPNI 222
PG G G LV HP + +AFTGS E G + + G +N+K+ E+GGK+ I
Sbjct: 730 PGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAII 789
Query: 223 IFADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFD 282
I DADLD AV + F GQ C A SR V D +YD+F+ R AK VG D
Sbjct: 790 IDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKFIERLVSMAKATKVGPSED 849
Query: 283 LNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIA 342
G D + M I E+ E GK +G ++ +G++V T+ ++ + +IA
Sbjct: 850 PANYMGAVADDKAMKSIKEYAEIGKREGH-VLYESPVPAGEGYFVPMTIIGGIKPEHRIA 908
Query: 343 REEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
+EEIFGPV ++R ++ IE AN++ + L +F++ + + R G L
Sbjct: 909 QEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNL 963
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 418 bits (1078), Expect = e-144
Identities = 117/348 (33%), Positives = 185/348 (53%), Gaps = 9/348 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGK-TIPIN-GDFFAYTRHEPVGVC 109
+ + G S ++E ++ L + ++ G +P + P+GV
Sbjct: 89 MIARETGGTIIKSTI-ELEQTIAILDEAMTYTGELGGVKEVPSDIEGKTNKIYRLPLGVI 147
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAE-AGIPEGVVNIV 168
I P+NFP+ + IAPA+A GN++V KP QT ++ + A E AG+P GV+N++
Sbjct: 148 SSISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVLNVM 207
Query: 169 PGYGDA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADA 227
G ++ +P ++FTGST VG+ + + + KR LELGG +P + +DA
Sbjct: 208 LTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA-GRAFKRMALELGGNNPFAVLSDA 266
Query: 228 DLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQ 287
D+D AV+ A FG F + GQ C +R V +YDEFV + R K+ GD D
Sbjct: 267 DVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEKFTARVKQLPYGDQTDPKTVV 326
Query: 288 GPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
GP I++ Q++K LE IE K+ G +L G R G + P VF ++ KIA+ E+F
Sbjct: 327 GPLINERQIEKALEIIEQAKTDGIELAVEGKR---VGNVLTPYVFVGADNNSKIAQTELF 383
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
P+ +I+ S +E I+ AN+++YGL++AVFT DL+K + +G
Sbjct: 384 APIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSG 431
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 416 bits (1073), Expect = e-143
Identities = 112/351 (31%), Positives = 168/351 (47%), Gaps = 9/351 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCG 110
L +L+ GK +V+ + Y G + I G +P + PVG+ G
Sbjct: 104 LVSLEMGKILVEGVG-EVQEYVDICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVG 162
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA----GIPEGVVN 166
I +NFP+ + W A A+ GN + K A T L ++AV +IA+ +P + +
Sbjct: 163 IITAFNFPVAVYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICS 222
Query: 167 IVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFAD 226
+ G D G A+ + V+ ++FTGST+VGK V R+ LELGG + I F D
Sbjct: 223 LTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMV-QERFGRSLLELGGNNAIIAFED 281
Query: 227 ADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVE 286
ADL V A F GQ C R F+ ++I+DE V R + + VG+P+D NV
Sbjct: 282 ADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVL 341
Query: 287 QGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEI 346
GP K+ + L +E K +G +V GG G YV+PT+ + D IA E
Sbjct: 342 YGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTET 401
Query: 347 FGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVT--QGLRAG 395
F P+ + +F + EEV N GL++++FTKDL + +G G
Sbjct: 402 FAPILYVFKFQNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCG 452
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 391 bits (1008), Expect = e-133
Identities = 127/348 (36%), Positives = 185/348 (53%), Gaps = 8/348 (2%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
+ GK +++ +V+ + + Y A I G +P N D Y P GV I
Sbjct: 97 VAEQGKLLSVAEM-EVDVTATFIDYGCDNALTIEGDILPSDNQDEKIYIHKVPRGVVVGI 155
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG 172
WNFPL + KI PAL TGNT+VLKP ++TPL +G + EAG+P+GV+N++ G G
Sbjct: 156 TAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTG 215
Query: 173 DA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
G L + P + TGST GK + + S A + LELGGK+P ++ DADLD
Sbjct: 216 SVVGQTLCESPITKMITMTGSTVAGKQIYKTS-AEYMTPVMLELGGKAPMVVMDDADLDK 274
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
A E A +G F N GQ C R +V ++YDEF+A+ K VGDP D + + GP+
Sbjct: 275 AAEDALWGRFANCGQVCTCVERLYVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKC 334
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANVRDDMKIAREEIF 347
++ ++D I + QGA + GG + G + +PTV +V+ D + EE F
Sbjct: 335 NQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETF 394
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
GP+ +++ SS+E+ IE N+S YGL+A V T+ N L G
Sbjct: 395 GPILPIVKVSSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVG 442
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 388 bits (999), Expect = e-132
Identities = 138/344 (40%), Positives = 201/344 (58%), Gaps = 4/344 (1%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
TL+ GKP + ++ Y+ + ++A +I+G TIP D +P+GV I
Sbjct: 94 TLEQGKPLAEAKG-EISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAI 152
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG 172
PWNFP M+ K PALA G T+VLKPA QTP +ALA+ L AG+P GV N+V G
Sbjct: 153 TPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSA 212
Query: 173 DA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
A G L +P V K++FTGSTE+G+ + + A ++K+ +LELGG +P I+F DADLD
Sbjct: 213 GAVGNELTSNPLVRKLSFTGSTEIGRQLMEQC-AKDIKKVSLELGGNAPFIVFDDADLDK 271
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
AVEGA F N GQ C +R +VQD +YD F + + + +GD D V GP I
Sbjct: 272 AVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLI 331
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQ 351
D++ + K+ E I +GA++V GG G + QPT+ +V + K+++EE FGP+
Sbjct: 332 DEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLA 391
Query: 352 QLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
L RF +VI +AN++++GLAA + +DL + V + L G
Sbjct: 392 PLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYG 435
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 387 bits (997), Expect = e-131
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 5/345 (1%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
+++GKP+ + +V+Y+ Y A + TIP D + PVGV G I
Sbjct: 96 CMEHGKPWKEAQG-EVDYAAGFFDYCAKHISALDSHTIPEKPKDCTWTVHYRPVGVTGLI 154
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG 172
+PWNFP+ M+A K++ ALA G V+KPA +TPLT +A +++ + +P+G+VN+V G
Sbjct: 155 VPWNFPIGMIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGMVNLVMGKA 214
Query: 173 DA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
G L +H V ++FTGSTEVG+ + + A +K+ LELGG +P I+F DADL+A
Sbjct: 215 SVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT-AEQVKKLALELGGNAPFIVFDDADLEA 273
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
A + F GQ C +R FV + + D F + ER + TVGD + ++ GP I
Sbjct: 274 AADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQKLAERVNKMTVGDGMNDGIDIGPLI 333
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDDMKIAREEIFGPV 350
+K+ DK+ ++ +GA LVAG A G + PTV V +M +EE FGP+
Sbjct: 334 NKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPL 393
Query: 351 QQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
+ F + EEVI+ N++++GLA+ VFT D ++ V GLR G
Sbjct: 394 VPMALFRTEEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLRFG 438
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 386 bits (995), Expect = e-131
Identities = 134/344 (38%), Positives = 202/344 (58%), Gaps = 4/344 (1%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
T + GKP + ++ Y+ + ++A ++ G T+P + + EP+GVC I
Sbjct: 97 TTEQGKPLAEAKG-EIAYAASFIEWFAEEGKRVAGDTLPTPDANKRIVVVKEPIGVCAAI 155
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG 172
PWNFP M+A K+ PALA G IV+KPAE TP +ALA+ L AG+P+GV+++V G
Sbjct: 156 TPWNFPAAMIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDP 215
Query: 173 DA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
A G + +P V K++FTGST VG+L+ S A +K+ TLELGG +P I+F DADLDA
Sbjct: 216 KAIGTEITSNPIVRKLSFTGSTAVGRLLMAQS-APTVKKLTLELGGNAPFIVFDDADLDA 274
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
AVEGA + N GQ C +R FV + +YD F + + VG + GP I
Sbjct: 275 AVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGTESGATLGPLI 334
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQ 351
++ + K+ I ++GA L+ GG R + +PTV V+ DM +A+EE FGP+
Sbjct: 335 NEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLA 394
Query: 352 QLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
L RF+S EE++ AN++++GLAA ++++D+ + V + L G
Sbjct: 395 PLFRFASEEELVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYG 438
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 386 bits (994), Expect = e-131
Identities = 140/344 (40%), Positives = 204/344 (59%), Gaps = 6/344 (1%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
T + GKP + +V Y+ + ++A A +++G TIP +PVGV I
Sbjct: 117 TSEQGKPLAEARG-EVLYAASFIEWFAEEAKRVYGDTIPAPQNGQRLTVIRQPVGVTAAI 175
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG 172
PWNFP M+ K APALA G T++++PA+ TPLTALA+G L +AGIP GV+ IV G
Sbjct: 176 TPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKA 235
Query: 173 DA-GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
GA L + V K++FTGSTEVG+L+ A +KR +LELGG +P I+F DADLDA
Sbjct: 236 REIGAELTSNDTVRKLSFTGSTEVGRLLMAQC-APTIKRISLELGGNAPFIVFDDADLDA 294
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
AV+GA + N GQ C +R +VQ +YD+F + + K VG+ + V GP I
Sbjct: 295 AVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLAAKVKELKVGNGTEPGVVIGPMI 354
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQ 351
+++ + K+ IE S+GA+L+ GG G G + +P + V DM +A+EE FGP+
Sbjct: 355 EEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDMLVAKEETFGPLA 412
Query: 352 QLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
L F + EEVI +AN++ +GLAA +T++ + V++ L G
Sbjct: 413 PLFAFDTEEEVIAQANDTIFGLAAYFYTENFSRAIRVSEALEYG 456
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 383 bits (986), Expect = e-130
Identities = 130/348 (37%), Positives = 199/348 (57%), Gaps = 8/348 (2%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCGQI 112
T ++GKP ++ ++ YS L +++ A +++G I D A +P+GV I
Sbjct: 95 TAESGKPLKEAHG-EILYSAFFLEWFSEEARRVYGDIIHTPAKDRRALVLKQPIGVAAVI 153
Query: 113 IPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPG-Y 171
PWNFP M+ K+ ALA G T+V+KPAE TP +ALA+ L ++AGIP GV N++P
Sbjct: 154 TPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSR 213
Query: 172 GDA---GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
+A G A+ P V K++FTGST GK++ + A+++KR ++ELGG +P I+F A+
Sbjct: 214 KNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHA-ANSVKRVSMELGGLAPFIVFDSAN 272
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRR-TVGDPFDLNVEQ 287
+D AV GA F N GQ C ++ VQ I+D FV E K+ VG+ F+ Q
Sbjct: 273 VDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQ 332
Query: 288 GPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
GP I+++ ++K+ + + S+GA +V GG R + +PT+ NV DM EE F
Sbjct: 333 GPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETF 392
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
GP+ +I+F + EE I AN +D GLA +++D + V + L G
Sbjct: 393 GPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVG 440
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 381 bits (981), Expect = e-129
Identities = 107/342 (31%), Positives = 164/342 (47%), Gaps = 2/342 (0%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQII 113
T + GKP + + +V S +YA + + + A + P+GV I+
Sbjct: 76 TREMGKPIKQARA-EVTKSAALCDWYAEHGPAMLNPEPTLVENQQAVIEYRPLGVILAIM 134
Query: 114 PWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYGD 173
PWNFPL + P L GN+ +LK A A + ++AEAG P GV V +
Sbjct: 135 PWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNE 194
Query: 174 AGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDAAV 233
+ ++ P + V TGS G + +GA LK+ LELGG P I+ DADL+ AV
Sbjct: 195 GVSQMINDPRIAAVTVTGSVRAGAAIGAQAGA-ALKKCVLELGGSDPFIVLNDADLELAV 253
Query: 234 EGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQIDK 293
+ A G + N GQ C A R V++ I F R A +GDP + GP
Sbjct: 254 KAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARF 313
Query: 294 EQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQQL 353
+ D++ + +++ ++GA+L+ GG + +G Y TV A+V DM R+E+FGPV +
Sbjct: 314 DLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAI 373
Query: 354 IRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
+ AN+S++GL+A +FT D + L G
Sbjct: 374 TVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLECG 415
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 382 bits (983), Expect = e-129
Identities = 97/342 (28%), Positives = 155/342 (45%), Gaps = 2/342 (0%)
Query: 54 TLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQII 113
TL+ GK + S +VE + YYA ++ T + AY + GV
Sbjct: 73 TLEMGKLLSESKE-EVELCVSICNYYADHGPEMLKPTKLNSDLGNAYYLKQSTGVIMACE 131
Query: 114 PWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYGD 173
PWNFPL + AP GN I+LK A P +A +I AG PEG + + D
Sbjct: 132 PWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYD 191
Query: 174 AGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDAAV 233
A ++ P + VA TGS G V + +G NLK++T+ELGG I+ DAD
Sbjct: 192 QLADIIADPRIQGVALTGSERGGSAVAEAAGK-NLKKSTMELGGNDAFIVLDDADPQVLR 250
Query: 234 EGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQIDK 293
+ +N GQ C + R V+ + YDE + GDP + + P +
Sbjct: 251 NVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSE 310
Query: 294 EQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQQL 353
+ +K+ ++ GA++ KG + +PT+ ++ D + +E+FGP+ ++
Sbjct: 311 KAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEV 370
Query: 354 IRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
I+ AN+S YGL ++V D+D+ V+ + G
Sbjct: 371 FVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETG 412
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 344 bits (885), Expect = e-114
Identities = 68/375 (18%), Positives = 117/375 (31%), Gaps = 43/375 (11%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPIN---------GDFFAYTR 102
L+ P + ++ + LR +A + ++ +
Sbjct: 75 RAHLETALPEVRL-TGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQ 133
Query: 103 HEPVGVCGQIIPWNFPLLMLA--WKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA-- 158
+G NFPL A A ALA G +++K P T+ V I +A
Sbjct: 134 QIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALK 193
Query: 159 --GIPEGVVNIVPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTT--L 213
+P+ + ++ G G ALV HP + V FTGS G+ + +
Sbjct: 194 QEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFN-LAHERPEPIPFYG 252
Query: 214 ELGGKSPNIIFADADLDAA--VEGAHFGLFFNMGQCCCAGSRTFV-QDTIYDEFVARSGE 270
ELG +P IF A A + + GQ C F F+ +
Sbjct: 253 ELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQS 312
Query: 271 RAKRRTVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPT 330
+ P I ++ + G G + V
Sbjct: 313 L------IRQQSPSTLLTPGIRDSYQSQV---VSRGSDDGIDVTFSQAE----SPCVASA 359
Query: 331 VF---ANVRDDMKIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNY 387
+F + EEIFGP ++ ++ +++ + L A + + D
Sbjct: 360 LFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQV 419
Query: 388 --VTQGL--RAGTLI 398
+ L AG L+
Sbjct: 420 SQLIPRLEEIAGRLV 434
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 335 bits (861), Expect = e-112
Identities = 63/359 (17%), Positives = 122/359 (33%), Gaps = 26/359 (7%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
++G + ++ + Y + D+ + + + T EPVG+
Sbjct: 52 QAVEESGMGIVEDKVIKNHFA--SEFIYNKYKDEQTCGILEEDDNLGTMTIAEPVGIICG 109
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA----GIPEGVVNI 167
I+P P +K +L T N I+ P + + L+ +A G P+ ++
Sbjct: 110 IVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGW 169
Query: 168 VPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFAD 226
+ + AL++H + + TG + K + S+ K G P +I
Sbjct: 170 IDQPSVELSNALMKHDDIALILATGGPGMVK-----AAYSSGKPAIGVGAGNVPVVIDET 224
Query: 227 ADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVE 286
AD+ AV F+ G C + V D +YDE R D V
Sbjct: 225 ADIKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADK-VR 283
Query: 287 QGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEI 346
+ ID KI+ + ++ A G + + V D A E+
Sbjct: 284 KVLLIDGALNAKIVGQPATAIAEMA-----GVKVPADTKVLIGEGLGKVSYDDAFAHEK- 337
Query: 347 FGPVQQLIRFSSIEEVIERA----NNSDYGLAAAVFTKDLDKTNYVTQ---GLRAGTLI 398
P + R + E+ + +A G + ++T + + ++ ++
Sbjct: 338 LSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTARIL 396
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 340 bits (875), Expect = e-108
Identities = 105/354 (29%), Positives = 163/354 (46%), Gaps = 12/354 (3%)
Query: 50 SSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPING--DFFAYTRHEPVG 107
+L + GK + + S ++ + RYYA K+ G + G G
Sbjct: 593 IALLQREGGKTLDDALS-ELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRG 651
Query: 108 VCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNI 167
V I PWNFPL + ++ AL GN++V KPAEQTP A AL+ EAGIP+ + +
Sbjct: 652 VFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYL 711
Query: 168 VPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASN--LKRTTLELGGKSPNIIFA 225
V G G GAAL HP + V FTGSTEV + + + A + + E GG + I A
Sbjct: 712 VTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADA 771
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNV 285
A + + F + GQ C A FVQ+ + D + A+ +GDP D+
Sbjct: 772 TALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVAT 831
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 345
GP ID E ++ I K++ +L G +G +V P +F + EE
Sbjct: 832 HVGPVIDVEAKQRLDAHIARMKTEA-RLHFAG--PAPEGCFVAPHIFELT--EAGQLTEE 886
Query: 346 IFGPVQQLIRF--SSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
+FGP+ ++R+ ++E V+ + YGL V ++ D + ++ G +
Sbjct: 887 VFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNI 940
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 289 bits (742), Expect = 6e-93
Identities = 75/356 (21%), Positives = 117/356 (32%), Gaps = 37/356 (10%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAG------FADKIHGKTIPI---NGDFFAYTR 102
+ + + G P + + + LR +A + D+ +P
Sbjct: 108 IGSQETGLPEARL-NGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLV 166
Query: 103 HEPVGVCGQIIPWNFPLLM--LAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA-- 158
PVG NFPL A ALA G +V+K P T V + A
Sbjct: 167 QRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIR 226
Query: 159 --GIPEGVVNIVPGYG-DAGAALVQHPGVDKVAFTGSTEVGK-LVQQGSGASNLKRTTLE 214
G+ GV +++ G D G ALVQHP + V FTGS G+ L + E
Sbjct: 227 KTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLAGGRALFDLCAARPEPIPFFGE 286
Query: 215 LGGKSPNIIFADADLDAA---VEGAHFGLFFNMGQCCCAGSRTFVQDTI-YDEFVARSGE 270
LG +P + +A A +G L GQ C V + D F + E
Sbjct: 287 LGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADADRFTTAAVE 346
Query: 271 RAKRRTVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPT 330
+ + + + + + + + +G P
Sbjct: 347 ALAKVAPQTMLTDGIAKAYRDGQARF---------ATRNAVKPLLATESSG---RDASPN 394
Query: 331 VFANVRDDM---KIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLD 383
+F EE+FGP+ ++R S E+ E A L A + D
Sbjct: 395 LFETTGAQFLADHALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGD 450
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 272 bits (698), Expect = 7e-87
Identities = 107/286 (37%), Positives = 164/286 (57%), Gaps = 8/286 (2%)
Query: 100 YTRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAG 159
P+GV G I P+NFP+++ W A+A GNT +LKP+E+TPL + L +AG
Sbjct: 136 ANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAG 195
Query: 160 IPEGVVNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKS 219
+P+GV N+V G D +++HP + ++F GS VG+ V + G+ NLKR G K+
Sbjct: 196 LPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYK-KGSENLKRVQSLTGAKN 254
Query: 220 PNIIFADADLDAAVE---GAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRT 276
I+ DA+L+ V GA FG + G+ C A + V++ I DEF+A+ E+
Sbjct: 255 HTIVLNDANLEDTVTNIVGAAFG---SAGERCMACAVVTVEEGIADEFMAKLQEKVADIK 311
Query: 277 VGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVFANV 335
+G+ D V GP I ++ + L +IE G +GA+LV G D G++V PT+F NV
Sbjct: 312 IGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNV 371
Query: 336 RDDMKIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKD 381
+M I ++EIF PV +IR +++E IE AN S++ A +FT +
Sbjct: 372 TTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSN 417
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 266 bits (683), Expect = 3e-84
Identities = 98/290 (33%), Positives = 152/290 (52%), Gaps = 12/290 (4%)
Query: 100 YTRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAG 159
Y+ +PVG+ I P+NFP ++ W APA+A GN +LKP+E+ P + + L+ EAG
Sbjct: 157 YSIRQPVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAG 216
Query: 160 IPEGVVNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKS 219
+P G++N+V G A A++ HP + V+F GST + + V + A N KR G K+
Sbjct: 217 LPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYG-TAAMNGKRAQCFGGAKN 275
Query: 220 PNIIFADADLDAAVE---GAHFGLFFNMGQCCCAGSRT-FVQDTIYDEFVARSGERAKRR 275
II DADLD A GA +G + G+ C A S V + + + + +
Sbjct: 276 HMIIMPDADLDQAANALIGAGYG---SAGERCMAISVAVPVGEETANRLIDKLVPMVESL 332
Query: 276 TVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGG----GRAGDKGFYVQPTV 331
+G D + GP + KE +I I+SG QGA+LV G + + G ++ +
Sbjct: 333 RIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCL 392
Query: 332 FANVRDDMKIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKD 381
F +V DM I + EIFGPV ++R + EE + +YG A++T+D
Sbjct: 393 FDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIYTRD 442
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 255 bits (654), Expect = 1e-80
Identities = 52/365 (14%), Positives = 110/365 (30%), Gaps = 41/365 (11%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPI-NGDFFAYTRHEPVGVCG 110
+ + G + V ++ ++ + + + + + P+GV
Sbjct: 57 MAHEETGFG---IWQDKVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKVMEVAVPLGVVA 113
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAE----AGIPEGVVN 166
+IP P + +K ++ GN+IV P L +I+E AG P+G ++
Sbjct: 114 GLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAIS 173
Query: 167 IVPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFA 225
+ L++H + TG + + K S+ G P I
Sbjct: 174 CMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAA-----YSSGTPAIGVGPGNGPAFIER 228
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGD------ 279
A++ AV+ F+ G C + V+ + +A ++
Sbjct: 229 SANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLG 288
Query: 280 --PFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRD 337
N P I + + I A+++ V
Sbjct: 289 KFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEET--------------KVGA 334
Query: 338 DMKIAREEIFGPVQQLIRFSSIEEVIERANNSDY----GLAAAVFTKDLDKTNYVTQGLR 393
+ + E P+ + +E E + + Y G + ++D +
Sbjct: 335 KIPYS-REKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKP 393
Query: 394 AGTLI 398
L+
Sbjct: 394 VSRLL 398
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 258 bits (661), Expect = 1e-80
Identities = 93/332 (28%), Positives = 145/332 (43%), Gaps = 17/332 (5%)
Query: 76 LRYYAGFADKI-HGKTIPINGDFFAYTRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGN 134
R+ A FA ++ + I + G I P+NF + APAL GN
Sbjct: 170 FRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALM-GN 228
Query: 135 TIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYG-DAGAALVQHPGVDKVAFTGST 193
++ KP++ L + AV ++ EAG+P ++ VP G G + + + FTGS
Sbjct: 229 VVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSV 288
Query: 194 EVGKLVQQGSGAS-----NLKRTTLELGGKSPNIIFAD--ADLDAAVEGAHFGLFFNMGQ 246
K + + + R E GGK N F AD+D+ V G F GQ
Sbjct: 289 PTFKHLWRQVAQNLDRFRTFPRLAGECGGK--NFHFVHSSADVDSVVSGTLRSAFEYGGQ 346
Query: 247 CCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPF-DLNVEQGPQIDKEQMDKILEFIES 305
C A SR +V +++ + R E R VGDP D ID + +I +++E
Sbjct: 347 KCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEH 406
Query: 306 GKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQQLIRF--SSIEEV 362
+S ++AGG G+YV+P + + I +EEIFGPV + + E
Sbjct: 407 ARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRET 466
Query: 363 IERANN-SDYGLAAAVFTKDLDKTNYVTQGLR 393
++ ++ + YGL AVF +D T+ LR
Sbjct: 467 LKLVDSTTSYGLTGAVFAQDKAIVQEATRMLR 498
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 214 bits (547), Expect = 1e-64
Identities = 93/347 (26%), Positives = 151/347 (43%), Gaps = 20/347 (5%)
Query: 56 DNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHG----KTIPINGDFF---AYTRHEPVGV 108
D K +Y +V Y L + Y K+ + + Y EP+GV
Sbjct: 67 DLHKNEWNAYYEEVVYVLEEIEY---MIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGV 123
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIV 168
I WN+P + + A+A GN +VLKP+E + A + +I + + + + ++
Sbjct: 124 VLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQY-LDKDLYPVI 182
Query: 169 PGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G L++ D + +TGST VGK++ + A +L TLELGGKSP + + D
Sbjct: 183 NGGVPETTELLKER-FDHILYTGSTGVGKIIMTAA-AKHLTPVTLELGGKSPCYVDKNCD 240
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
LD A +G F N GQ C A +I ++ V + + K D + + G
Sbjct: 241 LDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKK-SRDYG 299
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFG 348
I +++ IE K VA GG Y+ PT+ +V + +EEIFG
Sbjct: 300 RIISARHFQRVMGLIEGQK------VAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFG 353
Query: 349 PVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAG 395
PV ++ S+EE I+ N + LA +F+ + + +G
Sbjct: 354 PVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 200 bits (510), Expect = 1e-59
Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 23/348 (6%)
Query: 56 DNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHG----KTIPINGDFF---AYTRHEPVGV 108
D GKP ++ ++ L + + + ++P Y EP GV
Sbjct: 77 DLGKPKDVVDLAEIGAVLHEIDF---ALAHLDEWVAPVSVPSPDIIAPSECYVVQEPYGV 133
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIV 168
I P+N+P+ + + A+ GNT ++KP+E TP T+ + +IAEA V ++
Sbjct: 134 TYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKIIAEA-FAPEYVAVI 192
Query: 169 PGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADAD 228
G D + L+ P D + FTGS VGK+V Q + A +L LELGGK P I+ DAD
Sbjct: 193 QGGRDENSHLLSLP-FDFIFFTGSPNVGKVVMQ-AAAKHLTPVVLELGGKCPLIVLPDAD 250
Query: 229 LDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQG 288
LD V FG F N GQ A +V ++ D + V G
Sbjct: 251 LDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLE-----RLVERVKTELPEINSTG 305
Query: 289 PQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFG 348
+ + Q+ +++ +E+ + Q V G +A + TV V + + EE+FG
Sbjct: 306 KLVTERQVQRLVSLLEATQGQ----VLVGSQADVSKRALSATVVDGVEWNDPLMSEELFG 361
Query: 349 PVQQLIRFSSIEEVIERANNS-DYGLAAAVFTKDLDKTNYVTQGLRAG 395
P+ ++ F S+ I++ N LA VF KD+D + +++G
Sbjct: 362 PILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSG 409
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 87/495 (17%), Positives = 142/495 (28%), Gaps = 170/495 (34%)
Query: 17 LKNYSAA--AVPKPITKPKIEHTQLFINNEFVNA-QSSLETLDNGKPYNMSYSVDVEYSL 73
+KNY A +P K ++ LF V + L + G+ Y + E L
Sbjct: 123 IKNYITARIMAKRPFDKK--SNSALF---RAVGEGNAQLVAIFGGQGNTDDY-FE-E--L 173
Query: 74 RTLRY--YAGF---------------------ADKIHGKTIPI-----------NGDFFA 99
R L Y Y A+K+ + + I + D+
Sbjct: 174 RDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 100 YTRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAG 159
IP + PL+ + ++A + T + P E L + GA G
Sbjct: 233 S------------IPISCPLIGVI-QLAHYVVTAKLLGFTPGE---LRSYLKGATGHSQG 276
Query: 160 IPEGVVNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLK----RTTLEL 215
+ V + D+ + V K A T +G + ++L +LE
Sbjct: 277 L---VTAVAIAETDSWESFFVS--VRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 216 GGKSPNIIFA-----DADLDAAVEGA----------HFGLFFNMGQCCCAGSRTFV---- 256
P+ + + + V L N G++ V
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VN-------GAKNLVVSGP 382
Query: 257 -QD-----TIYDEFVARSG---------ERAKR---R--TVGDPF--DLNVEQGPQIDKE 294
Q + A SG ER + R V PF L V I+K+
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 295 QMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRD--DMKIAREEIFGPVQQ 352
+ + F + Q V+ + D D+++ I +
Sbjct: 443 LVKNNVSF------NAKDI--------------QIPVY-DTFDGSDLRVLSGSISERIVD 481
Query: 353 LIRFSSIEEVI--ERANNS------DYGLAAAVFTKDLDKTNYVTQGLR---AGTLIRFS 401
I I + E D+G A L N G+R AGTL
Sbjct: 482 CI----IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL---- 533
Query: 402 SIEEVIERANNSDYG 416
+ + DYG
Sbjct: 534 ------DINPDDDYG 542
Score = 46.2 bits (109), Expect = 2e-05
Identities = 44/255 (17%), Positives = 79/255 (30%), Gaps = 79/255 (30%)
Query: 171 YGDAGAALVQH-PGVDKVAFTGSTEVGKLVQQG----------SGASNLKRTTLELGGKS 219
YG + +V + P + F G E GK +++ G ++ E+ S
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGG--EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 220 PNIIFA--DADLDA---------AVEGAHF------GLFFN--------MGQ----CCCA 250
+ F L A +E A F GL +G+ A
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 251 GSRTFVQDTIY---------DEFVARSGERAKRRTVGDPFDLNVEQ-GPQIDKEQMDKIL 300
+ + + V R E R+ +N + +E + ++
Sbjct: 1775 DVMSI-ESLVEVVFYRGMTMQVAVPR-DELG--RSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 301 EFI--ESGK--------SQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDMKIAREEIFGP 349
E + +G + Q VA G D NV + +K+ + I
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--------VTNVLNFIKLQK--I--D 1878
Query: 350 VQQLIRFSSIEEVIE 364
+ +L + S+EEV
Sbjct: 1879 IIELQKSLSLEEVEG 1893
Score = 42.7 bits (100), Expect = 2e-04
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 50/143 (34%)
Query: 309 QGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPVQQLIRFSSIEEVIERANN 368
QG+Q G G Y +V + ++ +G F SI +++ NN
Sbjct: 1624 QGSQEQ-GMGMD----LYKTSKAAQDVWNRADNHFKDTYG-------F-SILDIVI--NN 1668
Query: 369 SDYGLAAAVFTKDLDKTNYVTQGLRAGTLIR--FSSI------------EEVIERANNSD 414
+ G G IR +S++ E++ + N
Sbjct: 1669 P--------------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH- 1713
Query: 415 YGLAAAVFTKD---LDKTNYVTQ 434
+ F + L T + TQ
Sbjct: 1714 --STSYTFRSEKGLLSATQF-TQ 1733
Score = 41.6 bits (97), Expect = 6e-04
Identities = 48/265 (18%), Positives = 77/265 (29%), Gaps = 87/265 (32%)
Query: 12 STLGSLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN-MSYSVDVE 70
T G +S + P T F + +N Y+ M + V+
Sbjct: 1655 DTYG----FSILDIVI--NNPV-NLTIHF------GGEKGKRIREN---YSAMIFETIVD 1698
Query: 71 YSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCG-----QIIPWNFPLLMLAWK 125
L+T + F + IN +YT G+ Q P + +
Sbjct: 1699 GKLKTEKI---FKE--------INEHSTSYTFRSEKGLLSATQFTQ------PA-LTLME 1740
Query: 126 IAPALATGNTIVLKPAEQTPLTALAVG-------ALIAEAGIPEGVVNIVPGYGDAGAAL 178
A A LK P A G AL + A V++I ++ +
Sbjct: 1741 KA-AFE-----DLKSKGLIPADATFAGHSLGEYAALASLA----DVMSI-----ESLVEV 1785
Query: 179 VQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNII---FADADLDAAVE- 234
V + G +Q L R+ + +P + F+ L VE
Sbjct: 1786 VFYR-------------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 235 -GAHFGLF-----FNM--GQCCCAG 251
G G +N+ Q AG
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAG 1857
Score = 37.0 bits (85), Expect = 0.014
Identities = 43/263 (16%), Positives = 70/263 (26%), Gaps = 111/263 (42%)
Query: 1 MLRLRNLALKSSTLGSLKNYSAAAVPKPITKPKIEHTQLFI---N--NEFVNA--QSSLE 53
ML + NL + + N + + +P Q+ I N V + SL
Sbjct: 338 MLSISNLTQE--QVQDYVNKTNSHLP--------AGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 54 TLDNG-----KPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGV 108
L+ P + S + +S R L++ F +P+ F H
Sbjct: 388 GLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRF--------LPVASPF-----HSH--- 430
Query: 109 CGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEA---GIPEGVV 165
+L PA L + A IP V
Sbjct: 431 ----------------------------LLVPASDLINKDLVKNNVSFNAKDIQIP--VY 460
Query: 166 NIVPGY------GDAGAALVQ------------------H-----PGVDKVAFTGSTEVG 196
+ G G +V H PG G++ +G
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG-------GASGLG 513
Query: 197 KLVQ---QGSGASNLKRTTLELG 216
L G+G + TL++
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDIN 536
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 4e-05
Identities = 62/467 (13%), Positives = 136/467 (29%), Gaps = 131/467 (28%)
Query: 1 MLRLRNLALKSSTLGSLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKP 60
+ L+ L + + ++ ++ + I + E +L + + N L L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLL---- 251
Query: 61 YNMSYSVDVEYS------------LRTLRYYAGFADKIHGKT---IPINGDFFAYTRHEP 105
+V+ + L T R + D + T I ++ T E
Sbjct: 252 -------NVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 106 VGVCGQIIPWNFPLLMLAWKIAPALA-TGNTIVLKPAEQTPLTALAVGALIAEAGIPEGV 164
+ + + + L P T N P L ++IAE+ I +G
Sbjct: 304 KSLLLKYL--DCRPQDL-----PREVLTTN----------PR-RL---SIIAES-IRDG- 340
Query: 165 VNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIF 224
+ + +H DK+ + + L + ++ L +F
Sbjct: 341 LATWDNW--------KHVNCDKLTTIIESSLNVL-----EPAEYRKMFDRLS------VF 381
Query: 225 -ADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARS--GERAKRRTVGDPF 281
A + + L + + ++ S ++ K T+ P
Sbjct: 382 PPSAHIPTIL----LSLIWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIP- 429
Query: 282 DLNVEQGPQIDKEQM--DKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD- 338
+ +E +++ E I++ K+ + + D
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKT-----------------FDSDDLIPPYLDQY 472
Query: 339 ---------MKIAREEIFGPVQQL---IRFSSIEEVIERANNSDYGLAAAVFT-KDLDK- 384
I E + + RF +E+ I + + + + T + L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 385 TNYVTQG-----LRAGTLIRFS-SIEEVIERANNSDYGLAAAVFTKD 425
Y+ ++ F IEE + + +D L A+ +D
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALMAED 576
Score = 39.8 bits (92), Expect = 0.002
Identities = 62/411 (15%), Positives = 108/411 (26%), Gaps = 127/411 (30%)
Query: 26 PKPI-TKPKIEHTQLFINNEFVNAQSSLETLDNGKPYNMSYSVDVEYSLRTLRYYAGFAD 84
PK I +K +I+H + + TL + K M VE LR Y
Sbjct: 42 PKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLS-KQEEM-VQKFVEEVLRI--NYKFLMS 96
Query: 85 KIHGKTI-P-INGDFFAYTRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAE 142
I + P + + R +N L K+ AL L+PA+
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-----LRPAK 151
Query: 143 QTPLTALAVGALIAEAGIPEGVVNIVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQG 202
V+ + G G+
Sbjct: 152 --------------------NVL--I--DGVLGS-------------------------- 161
Query: 203 SGASNLKRTTLELGGKSPNIIFADADLDAAVEGAH-FGLF-FNMGQCCCAGSRTFVQDTI 260
GK+ + D L V+ F +F N+ C + + +
Sbjct: 162 --------------GKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 261 YDEFVARSGERAKRRTVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRA 320
+ R+ + ++ Q ++ ++S + LV
Sbjct: 206 LYQIDPNWTSRSD-HSSNIKLRIHSIQ---------AELRRLLKSKPYENCLLVL----- 250
Query: 321 GDKGFYVQPTVFANVRDDMKIAREEIFGP-VQQLI--RFSSIEEVIERANNSDYGL--AA 375
NV+ + K F + L+ RF + + + A + L +
Sbjct: 251 -L-----------NVQ-NAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 376 AVFTKD------LDKTNYVTQGLR----AGTLIRFSSI-EEVIERANNSDY 415
T D L + Q L R S I E + + D
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Score = 32.1 bits (72), Expect = 0.38
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 31/130 (23%)
Query: 326 YVQPTVFANVRDDMK--IAREE---IFG---PVQQLIRFSSIEEVIERANNSDYGLAAAV 377
+V +V+D K +++EE I V +R + +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---LFWTLLSKQEEMV----QK 81
Query: 378 FTKDLDKTNY------VTQGLRAGTLIRFSSIEEVIERANNSDYGLAAAVFTKD----LD 427
F +++ + NY + R +++ IE+ +R N + VF K L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDN-----QVFAKYNVSRLQ 135
Query: 428 KTNYVTQGLR 437
+ Q L
Sbjct: 136 PYLKLRQALL 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.14
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 8 ALKSSTL-GSLKNYSAAAVPKPITKPKIE 35
ALK L SLK Y+ + P K +E
Sbjct: 21 ALKK--LQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.7
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 127 APALATGNTI 136
APALA T+
Sbjct: 37 APALAIKATM 46
Score = 29.1 bits (64), Expect = 1.9
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 138 LKP--AEQTPLTALAVGALI 155
LK + P ALA+ A +
Sbjct: 29 LKLYADDSAP--ALAIKATM 46
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 29.1 bits (66), Expect = 2.7
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 253 RTFVQDTIYDEFVARSGERAKRRTV--------GDPFDLNVEQGPQIDKEQMDKILEFIE 304
+ I +F+ +G R + E G + + D +L+ I
Sbjct: 72 AILKEKHINHDFLVEAGTS--TRECFVVLSDDTNGSTMIP-EAGFTVSQTNKDNLLKQIA 128
Query: 305 SGKSQGAQLVAGG 317
+ +V G
Sbjct: 129 KKVKKEDMVVIAG 141
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 28.3 bits (64), Expect = 3.3
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 75 TLRYYAGFADKIHGKTIPINGD----FFAYTRHEPVGVCGQIIPWNF 117
T +Y F + K I +NG + + + G I WNF
Sbjct: 91 TEKYGVQF--DMFSK-IKVNGSDADDLYKFLKSRQHGTLTNNIKWNF 134
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein
BC008207 [HOMO sapiens], structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 27.2 bits (60), Expect = 4.8
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 345 EIFGPVQQ---LIRFSSIEEVIER 365
EIFGPV ++RF+S + + +
Sbjct: 69 EIFGPVAHPFYVLRFNSSDHIESK 92
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 28.3 bits (64), Expect = 5.3
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 278 GDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGG 317
+N GP + ++ L + S+ +V G
Sbjct: 116 KTITAIN-FPGPDVTDMDVNHFLRRYKMTLSKVDCVVISG 154
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 28.3 bits (64), Expect = 5.6
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 253 RTFVQDTIYDEFVARSGERAKRRTV-----GDPFDLNVEQGPQIDKEQMDKILEFIESGK 307
+ I F + E R ++ G+ ++ E GP + E++ LE +
Sbjct: 71 NELKKANIPQAFTSIKEE--TRDSIAILHEGNQTEIL-EAGPTVSPEEISNFLENFDQLI 127
Query: 308 SQGAQLVAGG 317
Q + G
Sbjct: 128 KQAEIVTISG 137
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 27.9 bits (63), Expect = 7.5
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 253 RTFVQDTIYDEFVARSGERAKRRTV-----GDPFDLNVEQGPQIDKEQMDKILEFIESGK 307
+ I F GE R + G ++ EQGP+ID ++ ++ E
Sbjct: 89 KKLDHADIKHAFYNIKGE--TRNCIAILHEGQQTEIL-EQGPEIDNQEAAGFIKHFEQMM 145
Query: 308 SQGAQLVAGG 317
+ + G
Sbjct: 146 EKVEAVAISG 155
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 27.2 bits (61), Expect = 8.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 75 TLRYYAGFADKIHGKTIPINGD----FFAYTRHEPVGVCGQIIPWNF 117
R+ + F I K I +NG+ + + + G+ G I WNF
Sbjct: 92 CTRFKSEF--PIFDK-IDVNGENASPLYRFLKLGKWGIFGDDIQWNF 135
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 27.9 bits (62), Expect = 8.4
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 91 IPINGDFFAYTRHEPVGVCGQIIP 114
IP GD FA +RH GV G +IP
Sbjct: 874 IPSIGDKFA-SRHGQKGVIGMLIP 896
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 28.0 bits (63), Expect = 8.9
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 124 WKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYGDAGAALVQH-- 181
+ ++ +++ T L + LI + + V+ L
Sbjct: 663 FDFYASMLNAARLIIADEH-TLLDTERLTDLILQENV--NVMFATTA---LFNLLTDAGE 716
Query: 182 ---PGVDKVAFTG 191
G+ + F G
Sbjct: 717 DWMKGLRCILFGG 729
>1aoh_A Cellulosome-integrating protein CIPA; cellulosome subunit,
B-barrel, cellulose degradation; 1.70A {Clostridium
thermocellum} SCOP: b.2.2.2 PDB: 1anu_A
Length = 147
Score = 26.9 bits (59), Expect = 9.2
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 366 ANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTLIRFSSIEEVIERANNSDYGLAAAVFTKD 425
+ G+A F D + G LI + + + A D + +F +D
Sbjct: 28 SGIPSKGIANCDFVYSYDPNVLEIIEIEPGELIVDPNPTKSFDTAVYPDRKMIVFLFAED 87
Query: 426 LDKTNY 431
Y
Sbjct: 88 SGTGAY 93
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 27.5 bits (62), Expect = 9.6
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 124 WKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGYGDAGAALVQHP 182
+I AL G VL + PL + LI E G + LV
Sbjct: 220 LEIWGALLNGGCCVL--NDLGPLDPGVLRQLIGERGA--DSAWLTAS---LFNTLVDLD 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,816,582
Number of extensions: 434785
Number of successful extensions: 1349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 145
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)