RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5844
(442 letters)
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 388 bits (998), Expect = e-132
Identities = 244/346 (70%), Positives = 288/346 (83%), Gaps = 1/346 (0%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
LETLDNGKPY +SY VD++ L+ LRYYAG+ADK HGKTIPI+GDFF+YTRHEPVGVCGQ
Sbjct: 99 LETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQ 158
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
IIPWNFPLLM AWK+ PALATGN +V+K AEQTPLTAL V LI EAG P GVVNIVPG+
Sbjct: 159 IIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGF 218
Query: 172 G-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLD 230
G AGAA+ H VDKVAFTGSTE+G+++Q +G+SNLKR TLELGGKSPNII +DAD+D
Sbjct: 219 GPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMD 278
Query: 231 AAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQ 290
AVE AHF LFFN GQC CAGSRTFVQ+ IYDEFV RS RAK R VG+PFD EQGPQ
Sbjct: 279 WAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQ 338
Query: 291 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPV 350
+D+ Q KIL +I +GK +GA+L+ GGG A D+G+++QPTVF +V+D M IA+EEIFGPV
Sbjct: 339 VDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPV 398
Query: 351 QQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
Q+++F +IEEV+ RANNS YGLAAAVFTKDLDK NY++Q L+AGT
Sbjct: 399 MQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGT 444
Score = 43.9 bits (103), Expect = 3e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 24 AVPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN 62
AVP P +P++ Q+FINNE+ +A S +T P
Sbjct: 1 AVPAPNQQPEVFCNQIFINNEWHDAVSR-KTFPTVNPST 38
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 382 bits (983), Expect = e-130
Identities = 221/346 (63%), Positives = 283/346 (81%), Gaps = 1/346 (0%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
+E ++ GK ++ +Y +D+ ++TLRY AG+ADKI G+TIP++G+FF YTR EPVGVCGQ
Sbjct: 99 MEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQ 158
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
IIPWNFPLLM WKI PAL+ GNT+V+KPAEQTPLTAL +G+LI EAG P GVVNIVPGY
Sbjct: 159 IIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGY 218
Query: 172 G-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLD 230
G AGAA+ H VDKVAFTGSTEVGKL+++ +G SNLKR +LELGGKSP I+FADADLD
Sbjct: 219 GPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLD 278
Query: 231 AAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQ 290
AVE AH G+F++ GQCC A SR FV+++IYDEFV RS ERAK+ +G+P V QGPQ
Sbjct: 279 NAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQ 338
Query: 291 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIFGPV 350
IDKEQ +KIL+ IESGK +GA+L GGG G+KG+++QPTVF++V DDM+IA+EEIFGPV
Sbjct: 339 IDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPV 398
Query: 351 QQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
QQ+++F S+++VI+RANN+ YGL+A +FT D+DK V+ L++GT
Sbjct: 399 QQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGT 444
Score = 43.5 bits (102), Expect = 4e-05
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 25 VPKPITKPKIEHTQLFINNEFVNAQSSLETLDNGKPYN 62
VP P+T + ++T++FINNE+ ++ S + P
Sbjct: 2 VPAPLTNLQFKYTKIFINNEWHSSVSG-KKFPVFNPAT 38
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 333 bits (856), Expect = e-111
Identities = 149/351 (42%), Positives = 208/351 (59%), Gaps = 8/351 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPVGVCGQ 111
LE ++N D++ + + + YYAG A + G+ I + G FAYTR EP+GVC
Sbjct: 103 LEVINN-GKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRREPLGVCAG 161
Query: 112 IIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPGY 171
I+ WN+P ++ AWK APALA GN +V KP+ TP+T + + + EAG+P G+VN+V G
Sbjct: 162 ILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGG 221
Query: 172 GDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADLDA 231
+ G+ L HP V KV+FTGS GK V + A +K TLELGGKSP +IF D +L+
Sbjct: 222 AETGSLLCHHPNVAKVSFTGSVPTGKKVME-MSAKTVKHVTLELGGKSPLLIFKDCELEN 280
Query: 232 AVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGPQI 291
AV GA F GQ C G+R FVQ I +F+ +R K VGDP G I
Sbjct: 281 AVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLI 340
Query: 292 DKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFANVRDDMKIAREE 345
K Q+DK+L F+ K +GA+++ GG G+++ P V N RDDM +EE
Sbjct: 341 SKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEE 400
Query: 346 IFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
IFGPV ++ F + EEV++RANN+ +GLA+ VFT+D+ + + V L AGT
Sbjct: 401 IFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGT 451
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 276 bits (706), Expect = 7e-89
Identities = 132/348 (37%), Positives = 199/348 (57%), Gaps = 5/348 (1%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIP-INGDFFAYTRHEPVGVCG 110
LE+ + GKP + +++ ++ + R++AG A ++G + R +P+GV
Sbjct: 84 LESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVA 143
Query: 111 QIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVPG 170
I PWN+PL+M AWK+APALA GN +VLKP+E TPLTAL + L + P GVVNI+ G
Sbjct: 144 SIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVNILFG 202
Query: 171 YG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADADL 229
G G L HP V V+ TGS G+ + + + ++KRT +ELGGK+P I+F DAD+
Sbjct: 203 RGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS-SIKRTHMELGGKAPVIVFDDADI 261
Query: 230 DAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQGP 289
+A VEG ++N GQ C A R + Q IYD V + G G P D + E GP
Sbjct: 262 EAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGP 321
Query: 290 QIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTVFANVRDDMKIAREEIFG 348
++++ + +E K+ G V GG + G+Y PT+ A D I ++E+FG
Sbjct: 322 LSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFG 381
Query: 349 PVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
PV + F + E+V+ AN+S YGLA++V+TKD+ + + V+ L+ G
Sbjct: 382 PVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGC 429
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 238 bits (608), Expect = 6e-74
Identities = 122/354 (34%), Positives = 182/354 (51%), Gaps = 11/354 (3%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTI--PINGDFFAYTRHEPVGVC 109
+ GK + + DV ++ + YYA A + + + + P+G
Sbjct: 119 TLVYEVGKNWVEAS-ADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAG 177
Query: 110 GQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNIVP 169
I PWNFP+ + I +A GNT++ KPAE + V + EAG P GVVN +P
Sbjct: 178 VVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLP 237
Query: 170 GYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSG-----ASNLKRTTLELGGKSPNII 223
G G + GA LV+HP + + FTGS EVG + + +G + KR +E GGK+ I+
Sbjct: 238 GVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIV 297
Query: 224 FADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDL 283
AD D A EG + GQ C A SR + Y+ + R +RA+R +VG P +
Sbjct: 298 DETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVG-PAEE 356
Query: 284 NVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 343
N + GP + EQ K+L +IE GK++G LV GG R +G+++ PTVF V +IA+
Sbjct: 357 NPDLGPVVSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKARIAQ 415
Query: 344 EEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
EEIFGPV +IR E +E AN++ YGL V+++ + + + G L
Sbjct: 416 EEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNL 469
Score = 27.5 bits (60), Expect = 3.6
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 5 RNLALKSSTLGSLKNYSAAAVPKPITKPKIEHTQLFINNEFVNAQSSLETLDN 57
RN +++ + A+ + + + H L+I E+V+ + + +L+
Sbjct: 7 RNEPIETFQTEEARRAMREALRR-VREEFGRHYPLYIGGEWVDTKERMVSLNP 58
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 225 bits (574), Expect = 2e-69
Identities = 115/351 (32%), Positives = 174/351 (49%), Gaps = 13/351 (3%)
Query: 52 LETLDNGKPYNMSYSVDVEYS-----LRTLRYYAGFADKIHGKTIPINGDFFAYTRHEPV 106
+ + + K Y + S V + G + A R EPV
Sbjct: 84 ILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPV 143
Query: 107 GVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVN 166
G+ I P+N+P+ + KIAPAL GN I KP Q ++ L + AEAG+P GV N
Sbjct: 144 GLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFN 203
Query: 167 IVPGYG-DAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFA 225
+ G G + G +V+H V+ + FTGST +G+ + + + ++ LELGGK I+
Sbjct: 204 TITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGK---MAGMRPIMLELGGKDSAIVLE 260
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNV 285
DADL+ + G F GQ C A R V +++ DE V + E+ T+G+P D +
Sbjct: 261 DADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPED-DA 319
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 345
+ P ID + D + I +GA + R +G + P +F V DM++A EE
Sbjct: 320 DITPLIDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMRLAWEE 376
Query: 346 IFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
FGPV +IR +S+EE IE +N S+YGL A++FT D + + + L GT
Sbjct: 377 PFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGT 427
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 215 bits (549), Expect = 7e-66
Identities = 94/350 (26%), Positives = 147/350 (42%), Gaps = 14/350 (4%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYA----GFADKIHGKTIPINGDFFAYTRHEPVG 107
D GK SY +V + L L +A+ Y EP+G
Sbjct: 45 ALASDLGKNEWTSYYEEVAHVLEELDTTIKELPDWAEDEPVAKTRQTQQDDLYIHSEPLG 104
Query: 108 VCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVNI 167
V I WN+P + + A+A GN ++LKP+E + A + + + +
Sbjct: 105 VVLVIGAWNYPFNLTIQPMVGAVAAGNAVILKPSEVSGHMADLLA--TLIPQYMDQNLYL 162
Query: 168 VPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFADA 227
V G + D + +TGST VGK+V + A +L TLELGGKSP + D
Sbjct: 163 VVKGGVPETTELLKERFDHIMYTGSTAVGKIVMA-AAAKHLTPVTLELGGKSPCYVDKDC 221
Query: 228 DLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVEQ 287
DLD A +G F N GQ C A +I ++ V + + K G+ + +
Sbjct: 222 DLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDF-YGEDAKQSRDY 280
Query: 288 GPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREEIF 347
G I+ ++ I++ K VA GG Y+ PT+ +V + +EEIF
Sbjct: 281 GRIINDRHFQRVKGLIDNQK------VAHGGTWDQSSRYIAPTILVDVDPQSPVMQEEIF 334
Query: 348 GPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
GPV ++ S+EE I+ N + LA VF+ + + +G +
Sbjct: 335 GPVMPIVCVRSLEEAIQFINQREKPLALYVFSNNEKVIKKMIAETSSGGV 384
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 190 bits (482), Expect = 1e-55
Identities = 107/352 (30%), Positives = 165/352 (46%), Gaps = 10/352 (2%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTI-----PINGDFFAYTRHEPV 106
+ ++ GKP + + +V+ ++ LR KI G I + R EP+
Sbjct: 98 VLVMNAGKPKSAAVG-EVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPL 156
Query: 107 GVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGIPEGVVN 166
GV I P+N+PL KI + GN +V+KP+ PL A + +AG P +
Sbjct: 157 GVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIA 216
Query: 167 IVPGYGDAGAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGKSPNIIFAD 226
++ G +V V V+FTGSTEVG+ V + +K+ +ELGG P I+ D
Sbjct: 217 LLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVG---GVKQYVMELGGGDPAIVLED 273
Query: 227 ADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNVE 286
ADLD A + G++ GQ C A + +Y + V +R VGDP D V+
Sbjct: 274 ADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPRDPTVD 333
Query: 287 QGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQP-TVFANVRDDMKIAREE 345
GP I +D+++ IE +G +++AGG R G A+ DM + + E
Sbjct: 334 VGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTLVEAPADRVKDMVLYKRE 393
Query: 346 IFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTL 397
+F PV + +++ IE AN YGL AAVF +D+ K + L G +
Sbjct: 394 VFAPVASAVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAI 445
Score = 26.5 bits (57), Expect = 7.9
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 31 KPKIEHTQLFINNEFVNAQSSLETLD 56
K + ++ E+ + +E
Sbjct: 11 KGGVPVYPSYLAGEWGGSGQEIEVKS 36
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 110 bits (275), Expect = 3e-27
Identities = 43/358 (12%), Positives = 91/358 (25%), Gaps = 56/358 (15%)
Query: 52 LETLDNGKPYNMSYS-----------VDVEYSLRTLRYYAGFADKIHGKTIPINGDFFAY 100
+D K ++ ++ G D + +
Sbjct: 46 ANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACETVIGLKDPVGEVIDSWVREDGLR 105
Query: 101 TRHEPVGVCGQIIPWNFPLLMLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAGI 160
V + I + + AL +GNTI+L+ + A+ + I EA
Sbjct: 106 IARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALK 165
Query: 161 PEGVVNIVPGYGDA--GAALVQHPGVDKVAFTGSTEVGKLVQQGSGASNLKRTTLELGGK 218
+ + + + +++ + + G + N LE G
Sbjct: 166 ETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLIS-FVRDNATVPVLETGVG 224
Query: 219 SPNIIFADADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVG 278
+ +I ++ C A + V + I EF+ E ++ V
Sbjct: 225 NCHIFVDESADLKKAVPVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVE 284
Query: 279 DPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD 338
+K + P V DD
Sbjct: 285 VRGC---------------------------------------EKTREIVPDVVPATEDD 305
Query: 339 MKIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGT 396
E + + +++E IE G + ++ T++ + A
Sbjct: 306 W---PTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAA 360
Score = 57.4 bits (137), Expect = 1e-09
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 396 TLIRFSSIEEVIERANNSDYGLAAAVFTKDLDKTNYVTQGLRAGTVW 442
+ +++E IE G + ++ T++ + A V+
Sbjct: 316 AIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVY 362
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 88.2 bits (217), Expect = 2e-19
Identities = 54/370 (14%), Positives = 108/370 (29%), Gaps = 33/370 (8%)
Query: 52 LETLDNGKPYNMSYSVDVEYSLRTLRYYAGFADKIHGKTIPIN---------GDFFAYTR 102
L+ P + ++ + LR +A + ++ +
Sbjct: 71 RAHLETALPEVRL-TGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQ 129
Query: 103 HEPVGVCGQIIPWNFPLL--MLAWKIAPALATGNTIVLKPAEQTPLTALAVGALIAEAG- 159
+G NFPL A ALA G +++K P T+ V I +A
Sbjct: 130 QIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALK 189
Query: 160 ---IPEGVVNIVPGYGDAGAALVQHPG-VDKVAFTGSTEVGKLVQQGSGASNLKRTTLEL 215
+P+ + ++ G A + + V FTGS G+ + +
Sbjct: 190 QEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGE 249
Query: 216 GGKSPNIIFADADLDAAVE---GAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERA 272
G + + A + + GQ C F +T + + +
Sbjct: 250 LGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSL 309
Query: 273 KRRTVGDPFDLNVEQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 332
R+ + + + I+ SQ
Sbjct: 310 IRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQAESPCVASA---------LFVTS 360
Query: 333 ANVRDDMKIAREEIFGPVQQLIRFSSIEEVIERANNSDYGLAAAVFT--KDLDKTNYVTQ 390
+ EEIFGP ++ ++ +++ + L A + +D + + +
Sbjct: 361 SENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIP 420
Query: 391 GLR--AGTLI 398
L AG L+
Sbjct: 421 RLEEIAGRLV 430
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 30.2 bits (68), Expect = 0.11
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 262 DEFVARSGERAKRRTVGDPFDL----NVEQGPQIDKEQMDKILEFIESGKSQ 309
+E + RA PF + + E P + + I IE G+S
Sbjct: 37 NEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESS 88
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 292 DKEQ-MDKILEFIESGKSQGAQLV-----AGGGRAGDKGFYVQPTVFANVRDDMKIAREE 345
+EQ + ++L+ + S+GA + A + F + + E
Sbjct: 19 TREQVVVRLLDMLTKAASRGANFIVFPELALTT-------FFPRWHFTDEAELDSFYETE 71
Query: 346 IFGPVQQLIR 355
+ GPV + +
Sbjct: 72 MPGPVVRPLF 81
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 26.7 bits (59), Expect = 1.5
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 262 DEFVARSGERAKRRTVGDPFDL----NVEQGPQIDKEQMDKILEFIESGKSQ 309
D++ A +A + P I K +KI+E +ESG +
Sbjct: 21 DKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLR 72
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 26.2 bits (58), Expect = 3.4
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 173 DAGA-ALVQHPGVDKVAFTGSTEVGKLVQQG---SGASNLKRTTLELGGKSPNIIFADAD 228
D GA + + V VG V G + T + +GG + A
Sbjct: 24 DGGADHITGYGNVT------PDNVGAYVDGTIYTRGGKEKQSTAIFVGGGD---MAAGER 74
Query: 229 LDAAVEGAHFGLF 241
+ AV+ FG F
Sbjct: 75 VFEAVKKRFFGPF 87
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio
cholerae [TaxId: 666]}
Length = 173
Score = 27.0 bits (60), Expect = 3.7
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 14/108 (12%)
Query: 226 DADLDAAVEGAHFGLFFNMGQCCCAGSRTFVQDTIYDEFVARSGERAKRRTVGDPFDLNV 285
A+ +E G+ N + ++ +RS V +
Sbjct: 69 GAEYYVGLEA---GIEENKTFAWM------IVESDQQRGESRSACLMLPPLVLERLRQAK 119
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFA 333
E G + MD++ + GA + Y Q + A
Sbjct: 120 ELG-----DVMDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILA 162
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId:
562]}
Length = 106
Score = 25.9 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 286 EQGPQIDKEQMDKILEFIESGKSQGAQ 312
G I Q+D L+ GK + AQ
Sbjct: 62 RHGFDILVGQIDDALKLANEGKVKEAQ 88
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.1 bits (55), Expect = 6.2
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 262 DEFVARSGERAKRRTVGDPFDL----NVEQGPQIDKEQMDKILEFIESGKSQ 309
+ +A P + ++ P + + +KI EF+ +GK +
Sbjct: 23 AIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLR 74
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 26.6 bits (57), Expect = 6.4
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 264 FVARSGERAKRRTVGDPFDLNVEQGPQIDKEQMDKILEFIES 305
GE DL + + K Q + +ES
Sbjct: 295 AGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLVES 336
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 25.6 bits (56), Expect = 6.9
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 291 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK--IAREEIFG 348
+ + Q+ K+L+F+ +G L+A + + + P ++ + I E++F
Sbjct: 58 VKEHQVRKLLDFLSMFTMKGVPLIAIKFKQVHEWRVLVPEKAEDIIVTIDNSIPIEDLFK 117
Query: 349 PVQQLI 354
+++ I
Sbjct: 118 ILEKRI 123
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 25.8 bits (56), Expect = 7.2
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 242 FNMGQCCCAGSRTFVQDTIY-----DEFVARSGERAKRRTVGDPFDLNVEQGPQIDKEQM 296
++ C +QD + + +R V D F L + Q Q +
Sbjct: 94 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 153
Query: 297 DKILE 301
+ +
Sbjct: 154 EMAIS 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,588,481
Number of extensions: 73990
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 40
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)