Query psy5845
Match_columns 87
No_of_seqs 161 out of 1244
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 19:30:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2450|consensus 99.8 1.9E-20 4.2E-25 129.8 8.0 85 3-87 315-400 (501)
2 PRK11241 gabD succinate-semial 99.8 2.1E-19 4.5E-24 126.1 10.1 85 3-87 302-386 (482)
3 cd07140 ALDH_F1L_FTFDH 10-form 99.8 1.8E-19 3.9E-24 126.5 9.7 85 3-87 304-388 (486)
4 TIGR01780 SSADH succinate-semi 99.8 3.4E-19 7.5E-24 123.9 9.8 85 3-87 274-358 (448)
5 PLN02766 coniferyl-aldehyde de 99.8 8.8E-19 1.9E-23 123.4 10.1 85 3-87 315-399 (501)
6 cd07123 ALDH_F4-17_P5CDH Delta 99.8 1.1E-18 2.4E-23 123.4 9.9 85 3-87 331-416 (522)
7 cd07141 ALDH_F1AB_F2_RALDH1 NA 99.8 1.9E-18 4.2E-23 121.0 10.0 85 3-87 302-386 (481)
8 PLN02419 methylmalonate-semial 99.8 1.9E-18 4.2E-23 123.7 9.8 85 3-87 403-491 (604)
9 cd07113 ALDH_PADH_NahF Escheri 99.8 2.3E-18 5.1E-23 120.5 10.0 85 3-87 297-381 (477)
10 KOG2451|consensus 99.8 1.4E-18 3E-23 118.0 8.5 85 3-87 318-403 (503)
11 PRK09406 gabD1 succinic semial 99.8 2.4E-18 5.3E-23 120.0 9.7 85 3-87 278-362 (457)
12 PRK10090 aldehyde dehydrogenas 99.8 2.6E-18 5.7E-23 118.6 9.7 85 3-87 227-312 (409)
13 TIGR01236 D1pyr5carbox1 delta- 99.8 2.6E-18 5.6E-23 121.8 9.8 85 3-87 331-417 (533)
14 TIGR03374 ABALDH 1-pyrroline d 99.8 3.7E-18 8.1E-23 119.5 9.9 85 3-87 292-377 (472)
15 PLN02278 succinic semialdehyde 99.8 4.7E-18 1E-22 119.6 10.0 85 3-87 316-400 (498)
16 TIGR03216 OH_muco_semi_DH 2-hy 99.8 5.9E-18 1.3E-22 118.6 9.8 85 3-87 296-385 (481)
17 PLN02466 aldehyde dehydrogenas 99.8 7.2E-18 1.6E-22 119.7 10.1 85 3-87 352-436 (538)
18 cd07106 ALDH_AldA-AAD23400 Str 99.8 7.1E-18 1.5E-22 117.2 9.8 85 3-87 268-352 (446)
19 cd07559 ALDH_ACDHII_AcoD-like 99.8 9.8E-18 2.1E-22 117.6 9.9 85 3-87 296-384 (480)
20 cd07085 ALDH_F6_MMSDH Methylma 99.8 9.3E-18 2E-22 117.5 9.8 85 3-87 291-379 (478)
21 cd07130 ALDH_F7_AASADH NAD+-de 99.7 1.2E-17 2.6E-22 117.0 9.8 84 3-87 291-374 (474)
22 PLN02174 aldehyde dehydrogenas 99.7 1.1E-17 2.5E-22 117.4 9.7 82 3-87 266-347 (484)
23 PRK13968 putative succinate se 99.7 1.3E-17 2.7E-22 116.6 9.9 85 3-87 281-365 (462)
24 cd07099 ALDH_DDALDH Methylomon 99.7 1.2E-17 2.7E-22 116.1 9.7 85 3-87 273-357 (453)
25 TIGR02278 PaaN-DH phenylacetic 99.7 9.1E-18 2E-22 121.4 9.4 84 3-87 305-389 (663)
26 cd07142 ALDH_F2BC Arabidosis a 99.7 1.2E-17 2.6E-22 117.0 9.7 85 3-87 298-382 (476)
27 cd07100 ALDH_SSADH1_GabD1 Myco 99.7 1.3E-17 2.7E-22 115.6 9.6 85 3-87 251-335 (429)
28 PRK13473 gamma-aminobutyraldeh 99.7 1.4E-17 3E-22 116.5 9.8 85 3-87 293-378 (475)
29 cd07097 ALDH_KGSADH-YcbD Bacil 99.7 1.5E-17 3.3E-22 116.3 10.0 85 3-87 291-377 (473)
30 cd07117 ALDH_StaphAldA1 Unchar 99.7 1.4E-17 3E-22 116.7 9.8 85 3-87 291-379 (475)
31 PLN02315 aldehyde dehydrogenas 99.7 1.5E-17 3.2E-22 117.4 9.9 84 3-87 313-396 (508)
32 PRK13252 betaine aldehyde dehy 99.7 1.4E-17 3E-22 116.9 9.5 85 3-87 297-385 (488)
33 cd07107 ALDH_PhdK-like Nocardi 99.7 1.6E-17 3.5E-22 115.7 9.7 85 3-87 272-360 (456)
34 cd07091 ALDH_F1-2_Ald2-like AL 99.7 2E-17 4.2E-22 115.8 9.6 85 3-87 298-382 (476)
35 COG1012 PutA NAD-dependent ald 99.7 1.8E-17 3.9E-22 116.1 9.4 82 3-87 289-371 (472)
36 cd07086 ALDH_F7_AASADH-like NA 99.7 2.2E-17 4.7E-22 115.7 9.7 85 3-87 292-378 (478)
37 cd07143 ALDH_AldA_AN0554 Asper 99.7 2.6E-17 5.6E-22 115.5 9.9 85 3-87 301-385 (481)
38 cd07088 ALDH_LactADH-AldA Esch 99.7 2.5E-17 5.5E-22 114.9 9.8 85 3-87 289-374 (468)
39 cd07110 ALDH_F10_BADH Arabidop 99.7 2.1E-17 4.6E-22 115.1 9.3 85 3-87 276-362 (456)
40 TIGR03250 PhnAcAld_DH putative 99.7 2.3E-17 5E-22 115.5 9.4 82 3-87 293-374 (472)
41 cd07148 ALDH_RL0313 Uncharacte 99.7 2.8E-17 6E-22 114.6 9.6 83 3-87 278-360 (455)
42 TIGR02299 HpaE 5-carboxymethyl 99.7 3.2E-17 7E-22 115.0 9.8 85 3-87 291-382 (488)
43 cd07115 ALDH_HMSADH_HapE Pseud 99.7 3.6E-17 7.8E-22 113.9 9.8 85 3-87 273-357 (453)
44 cd07089 ALDH_CddD-AldA-like Rh 99.7 3.6E-17 7.9E-22 114.1 9.8 85 3-87 279-365 (459)
45 cd07101 ALDH_SSADH2_GabD2 Myco 99.7 3.7E-17 8.1E-22 113.8 9.8 85 3-87 272-357 (454)
46 cd07118 ALDH_SNDH Gluconobacte 99.7 3.8E-17 8.1E-22 113.9 9.8 85 3-87 275-360 (454)
47 PRK09407 gabD2 succinic semial 99.7 3.7E-17 8.1E-22 115.7 9.9 85 3-87 308-393 (524)
48 cd07119 ALDH_BADH-GbsA Bacillu 99.7 3.8E-17 8.3E-22 114.5 9.8 85 3-87 290-378 (482)
49 PLN02467 betaine aldehyde dehy 99.7 4.4E-17 9.6E-22 114.9 10.0 85 3-87 307-393 (503)
50 cd07114 ALDH_DhaS Uncharacteri 99.7 5.6E-17 1.2E-21 113.0 9.8 85 3-87 275-363 (457)
51 cd07120 ALDH_PsfA-ACA09737 Pse 99.7 5.4E-17 1.2E-21 113.2 9.5 85 3-87 274-361 (455)
52 cd07139 ALDH_AldA-Rv0768 Mycob 99.7 5.8E-17 1.3E-21 113.3 9.7 85 3-87 292-378 (471)
53 cd07092 ALDH_ABALDH-YdcW Esche 99.7 6.8E-17 1.5E-21 112.3 9.8 84 3-87 273-356 (450)
54 cd07145 ALDH_LactADH_F420-Bios 99.7 5.3E-17 1.1E-21 113.1 9.2 83 3-87 279-361 (456)
55 cd07112 ALDH_GABALDH-PuuC Esch 99.7 7.1E-17 1.5E-21 112.7 9.9 85 3-87 282-368 (462)
56 cd07111 ALDH_F16 Aldehyde dehy 99.7 8.1E-17 1.7E-21 113.0 10.0 85 3-87 302-386 (480)
57 cd07108 ALDH_MGR_2402 Magnetos 99.7 8.2E-17 1.8E-21 112.2 9.7 85 3-87 273-362 (457)
58 cd07095 ALDH_SGSD_AstD N-succi 99.7 8.4E-17 1.8E-21 111.6 9.6 85 2-87 253-337 (431)
59 TIGR01804 BADH glycine betaine 99.7 1.1E-16 2.3E-21 111.9 9.9 85 3-87 289-377 (467)
60 cd07090 ALDH_F9_TMBADH NAD+-de 99.7 9.6E-17 2.1E-21 111.8 9.5 85 3-87 271-360 (457)
61 cd07144 ALDH_ALD2-YMR170C Sacc 99.7 1.1E-16 2.5E-21 112.2 9.8 85 3-87 300-388 (484)
62 PF00171 Aldedh: Aldehyde dehy 99.7 7.6E-17 1.6E-21 112.5 8.8 85 3-87 282-369 (462)
63 cd07098 ALDH_F15-22 Aldehyde d 99.7 1.2E-16 2.5E-21 111.6 9.7 85 3-87 279-367 (465)
64 cd07124 ALDH_PutA-P5CDH-RocA D 99.7 9.8E-17 2.1E-21 113.3 9.4 84 3-87 328-413 (512)
65 cd07138 ALDH_CddD_SSP0762 Rhod 99.7 1E-16 2.2E-21 112.0 9.4 85 3-87 286-373 (466)
66 cd07131 ALDH_AldH-CAJ73105 Unc 99.7 1.3E-16 2.8E-21 111.7 9.9 85 3-87 291-379 (478)
67 cd07103 ALDH_F5_SSADH_GabD Mit 99.7 1.2E-16 2.5E-21 111.1 9.6 85 3-87 273-357 (451)
68 cd07083 ALDH_P5CDH ALDH subfam 99.7 1.4E-16 3E-21 112.2 9.9 84 3-87 316-399 (500)
69 cd07102 ALDH_EDX86601 Uncharac 99.7 1.4E-16 3.1E-21 110.7 9.8 85 3-87 271-358 (452)
70 cd07151 ALDH_HBenzADH NADP+-de 99.7 1.2E-16 2.7E-21 111.6 9.5 82 3-87 287-368 (465)
71 PRK09457 astD succinylglutamic 99.7 1.3E-16 2.9E-21 112.0 9.6 83 4-87 292-375 (487)
72 cd07094 ALDH_F21_LactADH-like 99.7 1.6E-16 3.5E-21 110.6 9.6 82 3-87 277-358 (453)
73 cd07150 ALDH_VaniDH_like Pseud 99.7 1.7E-16 3.6E-21 110.4 9.4 82 3-87 275-356 (451)
74 TIGR01237 D1pyr5carbox2 delta- 99.7 1.7E-16 3.7E-21 112.1 9.6 84 3-87 329-412 (511)
75 TIGR01722 MMSDH methylmalonic 99.7 1.9E-16 4.1E-21 111.0 9.6 84 4-87 291-378 (477)
76 cd07116 ALDH_ACDHII-AcoD Ralst 99.7 1.8E-16 3.9E-21 111.1 9.5 84 3-87 296-383 (479)
77 PRK11563 bifunctional aldehyde 99.7 1.4E-16 3.1E-21 115.5 9.0 84 3-87 309-401 (675)
78 cd07152 ALDH_BenzADH NAD-depen 99.7 2E-16 4.3E-21 109.9 9.3 82 3-87 266-347 (443)
79 cd07146 ALDH_PhpJ Streptomyces 99.7 2.1E-16 4.5E-21 110.2 9.4 82 3-87 274-355 (451)
80 cd07128 ALDH_MaoC-N N-terminal 99.7 2.4E-16 5.3E-21 111.4 9.2 84 3-87 305-397 (513)
81 cd07147 ALDH_F21_RNP123 Aldehy 99.7 2.9E-16 6.3E-21 109.3 9.4 82 3-87 276-357 (452)
82 PRK09847 gamma-glutamyl-gamma- 99.7 4.4E-16 9.6E-21 109.6 9.7 83 3-87 315-397 (494)
83 cd07109 ALDH_AAS00426 Uncharac 99.7 4.3E-16 9.2E-21 108.5 9.4 84 3-87 273-359 (454)
84 cd07137 ALDH_F3FHI Plant aldeh 99.7 4.2E-16 9.2E-21 108.2 9.3 82 3-87 255-336 (432)
85 PLN02203 aldehyde dehydrogenas 99.7 4.5E-16 9.8E-21 109.4 9.5 82 3-87 265-346 (484)
86 PRK03137 1-pyrroline-5-carboxy 99.7 5E-16 1.1E-20 109.7 9.6 83 3-87 333-415 (514)
87 cd07134 ALDH_AlkH-like Pseudom 99.7 5.9E-16 1.3E-20 107.5 9.5 84 3-87 253-337 (433)
88 cd07104 ALDH_BenzADH-like ALDH 99.7 5.9E-16 1.3E-20 107.0 9.3 82 3-87 255-336 (431)
89 cd07093 ALDH_F8_HMSADH Human a 99.7 9.3E-16 2E-20 106.8 9.7 85 3-87 273-361 (455)
90 cd07082 ALDH_F11_NP-GAPDH NADP 99.7 1E-15 2.2E-20 107.1 9.8 83 3-87 295-377 (473)
91 TIGR03240 arg_catab_astD succi 99.7 9.8E-16 2.1E-20 107.6 9.5 84 3-87 289-373 (484)
92 KOG2454|consensus 99.6 1.7E-16 3.8E-21 108.2 4.9 85 3-87 347-435 (583)
93 cd07149 ALDH_y4uC Uncharacteri 99.6 1.3E-15 2.7E-20 105.9 9.3 82 3-87 277-358 (453)
94 PLN00412 NADP-dependent glycer 99.6 1.2E-15 2.7E-20 107.4 9.4 81 3-87 311-391 (496)
95 cd07133 ALDH_CALDH_CalB Conife 99.6 2.3E-15 5E-20 104.6 9.6 83 3-87 254-338 (434)
96 cd07135 ALDH_F14-YMR110C Sacch 99.6 1.6E-15 3.4E-20 105.5 8.4 80 3-87 261-340 (436)
97 PRK11903 aldehyde dehydrogenas 99.6 2.6E-15 5.7E-20 106.4 9.2 84 3-87 309-400 (521)
98 cd07125 ALDH_PutA-P5CDH Delta( 99.6 6.2E-15 1.3E-19 104.3 9.4 82 3-87 326-407 (518)
99 cd07078 ALDH NAD(P)+ dependent 99.6 9.3E-15 2E-19 100.9 10.0 85 3-87 252-337 (432)
100 KOG2455|consensus 99.6 4.8E-15 1E-19 102.1 7.3 86 2-87 357-444 (561)
101 cd07105 ALDH_SaliADH Salicylal 99.6 1.2E-14 2.6E-19 100.8 9.2 80 3-87 257-337 (432)
102 PTZ00381 aldehyde dehydrogenas 99.6 1.7E-14 3.8E-19 101.7 8.8 80 3-87 262-341 (493)
103 TIGR01238 D1pyr5carbox3 delta- 99.6 2.6E-14 5.7E-19 100.9 9.2 83 3-87 319-404 (500)
104 KOG2452|consensus 99.6 1.2E-14 2.6E-19 101.6 7.0 84 4-87 700-783 (881)
105 cd07136 ALDH_YwdH-P39616 Bacil 99.5 2.1E-14 4.6E-19 100.3 7.8 78 3-87 253-330 (449)
106 PRK11904 bifunctional proline 99.5 7.1E-14 1.5E-18 105.1 9.0 82 3-87 843-926 (1038)
107 KOG2453|consensus 99.5 7.2E-14 1.6E-18 94.2 8.0 84 3-87 312-395 (507)
108 PRK11809 putA trifunctional tr 99.5 1.7E-13 3.8E-18 104.6 9.2 83 3-87 930-1015(1318)
109 cd07132 ALDH_F3AB Aldehyde deh 99.5 2.1E-13 4.6E-18 95.0 8.7 78 3-87 253-330 (443)
110 PRK11905 bifunctional proline 99.5 3.2E-13 7E-18 102.8 8.9 83 3-87 835-918 (1208)
111 KOG2456|consensus 99.5 4.6E-14 1E-18 96.5 3.9 77 5-87 255-335 (477)
112 cd07127 ALDH_PAD-PaaZ Phenylac 99.4 9E-13 2E-17 94.0 8.5 79 3-87 361-443 (549)
113 cd07087 ALDH_F3-13-14_CALDH-li 99.4 1.4E-12 3E-17 90.5 8.1 78 3-87 253-330 (426)
114 TIGR02288 PaaN_2 phenylacetic 99.4 2.8E-12 6.1E-17 91.5 8.1 79 3-87 361-443 (551)
115 cd07126 ALDH_F12_P5CDH Delta(1 99.4 5.1E-12 1.1E-16 89.2 8.8 78 4-87 297-386 (489)
116 cd07084 ALDH_KGSADH-like ALDH 99.2 7.6E-11 1.6E-15 82.3 6.6 76 3-87 256-341 (442)
117 cd07129 ALDH_KGSADH Alpha-Keto 99.1 3.5E-10 7.5E-15 79.3 7.8 74 3-87 273-350 (454)
118 cd07081 ALDH_F20_ACDH_EutE-lik 98.7 2.7E-08 5.8E-13 69.7 4.5 58 30-87 263-327 (439)
119 TIGR02518 EutH_ACDH acetaldehy 98.6 6.1E-08 1.3E-12 68.7 4.9 58 3-60 260-325 (488)
120 cd07121 ALDH_EutE Ethanolamine 98.4 2.6E-07 5.6E-12 64.6 3.5 73 4-87 250-330 (429)
121 COG4230 Delta 1-pyrroline-5-ca 98.3 2.1E-06 4.6E-11 61.7 6.2 68 8-75 400-468 (769)
122 PRK15398 aldehyde dehydrogenas 98.2 1.7E-06 3.8E-11 61.1 4.6 73 4-87 282-360 (465)
123 cd07122 ALDH_F20_ACDH Coenzyme 97.8 6.8E-06 1.5E-10 57.8 1.5 57 3-59 251-315 (436)
124 KOG2449|consensus 97.6 0.00011 2.5E-09 44.3 4.1 71 8-87 13-84 (157)
125 PRK13805 bifunctional acetalde 97.5 8.1E-05 1.8E-09 56.2 3.2 71 5-86 262-342 (862)
126 cd07079 ALDH_F18-19_ProA-GPR G 87.2 0.66 1.4E-05 32.6 2.8 48 32-87 258-306 (406)
127 PLN02418 delta-1-pyrroline-5-c 87.2 0.97 2.1E-05 34.2 3.8 45 32-87 551-597 (718)
128 TIGR01092 P5CS delta l-pyrroli 74.0 3.9 8.5E-05 31.0 3.0 47 32-87 543-591 (715)
129 PF08846 DUF1816: Domain of un 71.5 5.9 0.00013 21.1 2.5 29 29-57 25-54 (68)
130 COG0422 ThiC Thiamine biosynth 70.8 32 0.0007 24.6 6.6 57 2-59 205-264 (432)
131 cd07077 ALDH-like NAD(P)+-depe 65.1 8.1 0.00017 27.0 2.9 45 32-87 249-294 (397)
132 KOG2450|consensus 61.2 5 0.00011 29.3 1.3 52 33-85 79-130 (501)
133 PLN02444 HMP-P synthase 57.9 63 0.0014 24.5 6.3 57 2-59 362-421 (642)
134 PRK09284 thiamine biosynthesis 54.9 76 0.0017 23.9 6.3 57 2-59 357-416 (607)
135 TIGR01358 DAHP_synth_II 3-deox 53.4 44 0.00095 24.3 4.9 35 28-62 32-66 (443)
136 TIGR02117 chp_urease_rgn conse 53.1 38 0.00083 21.9 4.3 20 32-51 127-146 (208)
137 TIGR02530 flg_new flagellar op 52.3 28 0.0006 19.9 3.1 23 32-54 31-53 (96)
138 PLN02291 phospho-2-dehydro-3-d 50.6 54 0.0012 24.0 5.0 35 28-62 51-85 (474)
139 COG1105 FruK Fructose-1-phosph 49.7 35 0.00076 23.5 3.9 33 28-60 106-138 (310)
140 PRK13352 thiamine biosynthesis 49.4 1E+02 0.0022 22.4 6.4 57 2-59 207-266 (431)
141 TIGR00190 thiC thiamine biosyn 48.4 1E+02 0.0022 22.3 6.4 57 2-59 204-263 (423)
142 PRK04946 hypothetical protein; 46.7 44 0.00095 21.2 3.7 45 14-58 84-132 (181)
143 PF11464 Rbsn: Rabenosyn Rab b 46.7 35 0.00076 16.4 2.8 17 36-52 3-19 (42)
144 PRK00197 proA gamma-glutamyl p 45.8 20 0.00043 25.3 2.3 48 32-87 264-312 (417)
145 cd00674 LysRS_core_class_I cat 44.3 1.1E+02 0.0023 21.5 5.6 46 1-46 1-52 (353)
146 PF01964 ThiC: ThiC family; I 40.5 75 0.0016 22.9 4.4 57 2-59 203-262 (420)
147 cd07570 GAT_Gln-NAD-synth Glut 39.6 54 0.0012 21.1 3.5 25 35-59 15-39 (261)
148 KOG0079|consensus 38.1 86 0.0019 19.8 3.9 56 5-62 65-123 (198)
149 cd07574 nitrilase_Rim1_like Un 38.1 58 0.0013 21.2 3.5 25 35-59 17-41 (280)
150 PF09601 DUF2459: Protein of u 37.8 1E+02 0.0022 19.3 4.6 26 32-57 97-125 (173)
151 KOG0805|consensus 35.9 69 0.0015 21.8 3.5 24 34-57 32-55 (337)
152 PF01474 DAHP_synth_2: Class-I 35.3 62 0.0013 23.5 3.4 35 28-62 33-67 (439)
153 TIGR03381 agmatine_aguB N-carb 35.0 71 0.0015 20.7 3.5 26 35-60 15-40 (279)
154 cd07569 DCase N-carbamyl-D-ami 34.9 69 0.0015 21.3 3.5 26 35-60 21-46 (302)
155 PF11294 DUF3095: Protein of u 34.9 1.3E+02 0.0029 21.4 4.9 54 3-61 282-335 (373)
156 cd07585 nitrilase_7 Uncharacte 34.7 72 0.0016 20.5 3.5 27 34-60 14-40 (261)
157 PRK00750 lysK lysyl-tRNA synth 34.5 1.3E+02 0.0028 22.1 5.0 47 1-47 5-57 (510)
158 cd07576 R-amidase_like Pseudom 34.5 72 0.0016 20.3 3.5 26 35-60 15-40 (254)
159 PF01383 CpcD: CpcD/allophycoc 33.8 70 0.0015 16.1 3.1 19 38-56 33-51 (56)
160 PF00795 CN_hydrolase: Carbon- 33.3 72 0.0016 19.2 3.2 24 35-58 17-40 (186)
161 PLN02747 N-carbamolyputrescine 32.9 82 0.0018 20.9 3.6 26 35-60 21-46 (296)
162 cd07586 nitrilase_8 Uncharacte 32.7 78 0.0017 20.4 3.4 25 35-59 15-39 (269)
163 cd07581 nitrilase_3 Uncharacte 32.5 83 0.0018 20.1 3.5 25 35-59 13-37 (255)
164 cd07578 nitrilase_1_R1 First n 32.0 82 0.0018 20.3 3.4 24 35-58 16-39 (258)
165 cd07572 nit Nit1, Nit 2, and r 31.7 87 0.0019 20.1 3.5 26 35-60 14-39 (265)
166 cd07197 nitrilase Nitrilase su 31.6 88 0.0019 19.7 3.5 26 34-59 13-38 (253)
167 cd07579 nitrilase_1_R2 Second 31.4 87 0.0019 20.7 3.5 23 35-57 14-36 (279)
168 cd08577 PI-PLCc_GDPD_SF_unchar 31.3 1.2E+02 0.0025 19.8 4.0 25 33-57 179-203 (228)
169 cd07587 ML_beta-AS mammalian-l 31.2 83 0.0018 21.9 3.5 26 35-60 86-111 (363)
170 PTZ00293 thymidine kinase; Pro 31.1 56 0.0012 21.2 2.5 31 31-61 81-112 (211)
171 PF07508 Recombinase: Recombin 30.9 53 0.0011 17.8 2.1 19 28-46 82-100 (102)
172 PF10096 DUF2334: Uncharacteri 30.9 99 0.0021 20.2 3.7 35 26-60 42-76 (243)
173 COG0388 Predicted amidohydrola 30.3 92 0.002 20.3 3.5 27 35-61 18-44 (274)
174 KOG0086|consensus 30.0 93 0.002 19.7 3.2 45 4-50 65-109 (214)
175 PF01234 NNMT_PNMT_TEMT: NNMT/ 28.7 57 0.0012 21.8 2.3 59 2-61 123-201 (256)
176 PLN02798 nitrilase 28.7 1E+02 0.0022 20.3 3.5 26 35-60 25-50 (286)
177 cd03143 A4_beta-galactosidase_ 28.3 1.2E+02 0.0026 17.9 3.5 26 31-60 63-88 (154)
178 PRK01217 hypothetical protein; 28.2 47 0.001 19.4 1.6 48 10-61 42-89 (114)
179 cd00311 TIM Triosephosphate is 28.2 1.6E+02 0.0034 19.5 4.2 32 30-61 170-208 (242)
180 PLN02504 nitrilase 28.0 1.1E+02 0.0025 21.1 3.7 25 35-59 40-64 (346)
181 cd07568 ML_beta-AS_like mammal 28.0 1.1E+02 0.0024 20.0 3.6 25 35-59 26-50 (287)
182 PF06506 PrpR_N: Propionate ca 27.9 75 0.0016 19.5 2.6 23 39-61 112-134 (176)
183 cd07584 nitrilase_6 Uncharacte 27.8 1.1E+02 0.0024 19.6 3.5 23 35-57 15-37 (258)
184 cd07583 nitrilase_5 Uncharacte 27.5 1.1E+02 0.0025 19.5 3.5 25 35-59 15-39 (253)
185 cd06534 ALDH-SF NAD(P)+-depend 27.5 1.7E+02 0.0037 20.0 4.5 16 72-87 257-272 (367)
186 cd07564 nitrilases_CHs Nitrila 27.5 1.1E+02 0.0024 20.3 3.5 24 35-58 16-39 (297)
187 cd07567 biotinidase_like bioti 26.7 1.1E+02 0.0025 20.7 3.5 25 35-59 23-47 (299)
188 PF08863 YolD: YolD-like prote 26.5 1.1E+02 0.0025 16.3 3.7 28 30-57 20-47 (92)
189 PRK14566 triosephosphate isome 25.9 1.6E+02 0.0035 19.8 4.0 32 30-61 183-221 (260)
190 cd00454 Trunc_globin Truncated 25.5 1.3E+02 0.0029 16.7 5.4 49 3-51 38-91 (116)
191 cd07573 CPA N-carbamoylputresc 25.1 1.4E+02 0.0029 19.5 3.6 26 35-60 15-40 (284)
192 PRK02877 hypothetical protein; 24.9 60 0.0013 18.7 1.6 34 27-60 48-81 (106)
193 PRK14567 triosephosphate isome 24.7 2E+02 0.0043 19.3 4.2 32 30-61 173-211 (253)
194 PRK13713 conjugal transfer pro 24.6 1.2E+02 0.0027 17.9 2.9 22 33-54 1-22 (118)
195 PRK00042 tpiA triosephosphate 24.5 2E+02 0.0044 19.1 4.3 32 30-61 174-212 (250)
196 PLN02561 triosephosphate isome 24.3 1.7E+02 0.0037 19.6 3.9 32 30-61 174-213 (253)
197 COG5470 Uncharacterized conser 24.2 1.5E+02 0.0033 16.9 5.0 38 32-69 12-51 (96)
198 TIGR00467 lysS_arch lysyl-tRNA 24.2 2.9E+02 0.0062 20.6 5.3 46 1-46 1-51 (515)
199 PF09673 TrbC_Ftype: Type-F co 24.0 1.3E+02 0.0028 17.3 3.0 23 39-61 11-33 (113)
200 KOG3181|consensus 24.0 67 0.0015 20.9 1.9 33 29-61 110-142 (244)
201 KOG2303|consensus 24.0 93 0.002 23.4 2.7 27 35-61 20-46 (706)
202 TIGR03768 RPA4764 metallophosp 23.8 1.6E+02 0.0035 21.8 3.9 52 4-57 81-132 (492)
203 cd07571 ALP_N-acyl_transferase 23.6 93 0.002 20.4 2.6 23 35-57 22-44 (270)
204 KOG1367|consensus 23.3 1.6E+02 0.0034 20.9 3.6 28 31-58 254-281 (416)
205 PRK00967 hypothetical protein; 22.8 68 0.0015 18.4 1.6 48 10-61 35-82 (105)
206 PF13580 SIS_2: SIS domain; PD 22.8 1.3E+02 0.0027 17.7 2.8 26 34-59 17-42 (138)
207 COG3607 Predicted lactoylgluta 22.8 1.6E+02 0.0035 17.8 3.2 23 34-56 78-100 (133)
208 PF08532 Glyco_hydro_42M: Beta 22.4 89 0.0019 19.7 2.2 26 31-60 67-92 (207)
209 PF15595 Imm31: Immunity prote 22.2 1.7E+02 0.0037 16.8 4.5 49 2-50 41-92 (107)
210 COG2047 Uncharacterized protei 22.1 41 0.00089 22.4 0.6 22 66-87 52-73 (258)
211 COG1151 6Fe-6S prismane cluste 21.9 1.5E+02 0.0033 22.4 3.5 50 8-57 223-281 (576)
212 PRK12855 hypothetical protein; 21.8 74 0.0016 18.3 1.6 35 27-61 48-82 (103)
213 COG1435 Tdk Thymidine kinase [ 21.6 1.2E+02 0.0027 19.6 2.7 31 31-61 86-119 (201)
214 PF12932 Sec16: Vesicle coat t 21.4 1.1E+02 0.0024 17.6 2.4 25 27-51 58-83 (118)
215 PF04898 Glu_syn_central: Glut 21.3 1.7E+02 0.0037 20.0 3.5 24 34-57 137-160 (287)
216 PF08625 Utp13: Utp13 specific 21.1 1E+02 0.0022 18.6 2.2 15 34-48 116-130 (141)
217 PF07368 DUF1487: Protein of u 21.1 2.5E+02 0.0055 18.4 4.3 43 32-79 64-106 (215)
218 TIGR01125 MiaB-like tRNA modif 21.1 1.3E+02 0.0029 21.2 3.1 29 33-61 47-75 (430)
219 cd07580 nitrilase_2 Uncharacte 21.1 1.8E+02 0.0038 18.9 3.5 25 35-59 15-39 (268)
220 COG0436 Aspartate/tyrosine/aro 21.0 2.6E+02 0.0056 19.7 4.5 48 4-57 154-201 (393)
221 COG3960 Glyoxylate carboligase 20.9 2.1E+02 0.0045 20.6 3.9 55 28-84 183-251 (592)
222 PRK12856 hypothetical protein; 20.8 79 0.0017 18.2 1.6 48 10-61 35-82 (103)
223 COG1862 YajC Preprotein transl 20.4 1.7E+02 0.0037 16.6 2.9 27 33-60 26-55 (97)
224 KOG0238|consensus 20.4 1.5E+02 0.0032 22.5 3.1 34 26-59 44-77 (670)
225 PF08044 DUF1707: Domain of un 20.3 1.4E+02 0.0029 14.9 3.0 20 33-52 3-22 (53)
226 PRK09121 5-methyltetrahydropte 20.2 2E+02 0.0044 19.9 3.7 45 4-48 286-331 (339)
227 COG5583 Uncharacterized small 20.0 1E+02 0.0022 15.6 1.7 18 4-21 8-25 (54)
No 1
>KOG2450|consensus
Probab=99.83 E-value=1.9e-20 Score=129.83 Aligned_cols=85 Identities=46% Similarity=0.701 Sum_probs=79.3
Q ss_pred hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|++|-+++++.+++ +++|||+++++..||+||+.|++||++|++.++++||++++||......|+||.|||+.|+.++|
T Consensus 315 ydefv~~~v~~a~~~~kvGdP~~~~~~qG~~i~~~q~ekI~~yi~~~k~eGa~l~~gG~~~g~~Gyfi~Ptv~~~v~~~m 394 (501)
T KOG2450|consen 315 YDEFVEKFVAAAKKKLKVGDPFDEGTEQGPQISKTQYEKILGYIESGKKEGATLLCGGVRLGDKGYFIKPTVFTNVTDDM 394 (501)
T ss_pred HHHHHHHHHHHHhcccccCCCCCcccccccccCHHHHHHHHHHHHHHHhcCCEEEecCcccCCCceEECCeeccCCChhh
Confidence 57888899988855 99999999999999999999999999999999999999999997655689999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.|++||
T Consensus 395 ~i~~EE 400 (501)
T KOG2450|consen 395 RIAKEE 400 (501)
T ss_pred hhhHhh
Confidence 999998
No 2
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=99.81 E-value=2.1e-19 Score=126.07 Aligned_cols=85 Identities=28% Similarity=0.425 Sum_probs=78.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++|||||+.|++++.+++++++++|+++++||......|+|+.|||+.+++++|.
T Consensus 302 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~GG~~~~~~g~f~~Ptvl~~v~~~~~ 381 (482)
T PRK11241 302 YDRFAEKLQQAVSKLHIGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVPANAK 381 (482)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCCCCCeEEeeEEEECCCCCCh
Confidence 58899999999999999999999999999999999999999999999999999999865423689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 382 i~~eE 386 (482)
T PRK11241 382 VAKEE 386 (482)
T ss_pred hhhCc
Confidence 99998
No 3
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=99.81 E-value=1.8e-19 Score=126.48 Aligned_cols=85 Identities=34% Similarity=0.504 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+++++||||||.+|++++.++|++++++|+++++||...+..|+|++|||+.++++++.
T Consensus 304 ~~~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~ 383 (486)
T cd07140 304 HDEFVRRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDVEDHMF 383 (486)
T ss_pred HHHHHHHHHHHHHhCCccCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeECCEEEeCCCCCCh
Confidence 58899999999999999999999999999999999999999999999999999999865334689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 384 i~~eE 388 (486)
T cd07140 384 IAKEE 388 (486)
T ss_pred hhhCC
Confidence 99998
No 4
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=99.80 E-value=3.4e-19 Score=123.87 Aligned_cols=85 Identities=32% Similarity=0.474 Sum_probs=79.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||||++.|++++.+++++++++|+++++||......|+|++|||+.+++++++
T Consensus 274 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~il~gg~~~~~~g~~~~Ptvl~~~~~~~~ 353 (448)
T TIGR01780 274 YDEFAKKLAEAVKKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVLSNVTQDML 353 (448)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeeEcCEEEecCCCCCh
Confidence 68899999999999999999999999999999999999999999999999999999965434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 354 i~~eE 358 (448)
T TIGR01780 354 VAKEE 358 (448)
T ss_pred HhhCC
Confidence 99998
No 5
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=99.79 E-value=8.8e-19 Score=123.39 Aligned_cols=85 Identities=39% Similarity=0.684 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++|||||+++++++.++|++++.+|+++++||......|+|++|||+.+++++|+
T Consensus 315 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~ 394 (501)
T PLN02766 315 YDEFVKKLVEKAKDWVVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDMK 394 (501)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence 68899999999999999999999999999999999999999999999999999999875434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 395 i~~eE 399 (501)
T PLN02766 395 IAQDE 399 (501)
T ss_pred hhhCC
Confidence 99998
No 6
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=99.79 E-value=1.1e-18 Score=123.40 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
+++|.++|++.++++++|+|.++++++|||||+++++++.++++++.++ |+++++||..+...|+|++|||+.+++++|
T Consensus 331 ~d~f~~~l~~~~~~l~~G~p~d~~t~~Gpli~~~~~~~v~~~v~~a~~~~Ga~vl~gg~~~~~~g~f~~PTvl~~v~~~~ 410 (522)
T cd07123 331 WPEVKERLLEELKEIKMGDPDDFSNFMGAVIDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKH 410 (522)
T ss_pred HHHHHHHHHHHHhhCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEeCCCcCCCCCceEcCEEEeCCCCCC
Confidence 5889999999999999999999999999999999999999999999999 999999986543358999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 411 ~i~~eE 416 (522)
T cd07123 411 KLMTEE 416 (522)
T ss_pred hhhhcC
Confidence 999998
No 7
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=99.78 E-value=1.9e-18 Score=121.04 Aligned_cols=85 Identities=47% Similarity=0.740 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||||++.|++++.+++++++++|+++++||...+..|+|+.|||+.+++++++
T Consensus 302 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 381 (481)
T cd07141 302 YDEFVKRSVERAKKRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFSDVTDDMR 381 (481)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999999976434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 382 ~~~eE 386 (481)
T cd07141 382 IAKEE 386 (481)
T ss_pred hhhcc
Confidence 99998
No 8
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=99.78 E-value=1.9e-18 Score=123.70 Aligned_cols=85 Identities=29% Similarity=0.371 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc----CCCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~----~~~g~~i~Ptii~~v~ 78 (87)
+++|.++|++.++++++|+|.+++++|||||++.|++++..++++|+++|+++++||... ...|+|++|||+.+++
T Consensus 403 ~d~f~e~l~~~~~~l~vG~p~d~~t~~GPlis~~~~~~v~~~i~~A~~~GAkvl~GG~~~~~~~~~~G~f~~PTVL~~v~ 482 (604)
T PLN02419 403 AKSWEDKLVERAKALKVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTILSGVT 482 (604)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhcCCEEEeCCccccCCCCCCCeEEeeEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999999998642 1358999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++|.+++||
T Consensus 483 ~d~~i~~eE 491 (604)
T PLN02419 483 PDMECYKEE 491 (604)
T ss_pred CCCHHHcCC
Confidence 999999998
No 9
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=99.78 E-value=2.3e-18 Score=120.53 Aligned_cols=85 Identities=21% Similarity=0.457 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.|||||++.|++++.++|++++++|+++++||......|+|+.|||+.++++++.
T Consensus 297 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~v~~~~~ 376 (477)
T cd07113 297 FDELVTKLKQALSSFQVGSPMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADSR 376 (477)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeEeCEEEecCCCCCh
Confidence 58899999999999999999999999999999999999999999999999999999875433589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 377 ~~~eE 381 (477)
T cd07113 377 LMREE 381 (477)
T ss_pred HHhCC
Confidence 99998
No 10
>KOG2451|consensus
Probab=99.78 E-value=1.4e-18 Score=117.99 Aligned_cols=85 Identities=28% Similarity=0.441 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc-ccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~-~~~~~g~~i~Ptii~~v~~~~ 81 (87)
||.|..+|.++++++++|+++++++..|||||+.+.+++..+++||+.+|+++++||+ ..+...+|+.||||.|++++|
T Consensus 318 yD~Fv~~l~e~vkkl~vGdG~~~~tt~GpLIne~av~Kve~~v~DAvsKga~ii~GGk~~~~lg~~fyePTvl~~V~~~m 397 (503)
T KOG2451|consen 318 YDKFVSKLAEAVKKLKVGDGLDPGTTQGPLINEKAVEKVEKHVEDAVSKGAKIILGGKERSELGPTFYEPTVLSNVTQNM 397 (503)
T ss_pred HHHHHHHHHHHHHheeccCCCCCCCccCCccCHHHHHHHHHHHHHHHhcCCeEEeCCeEccccCCccccceEeecCCccc
Confidence 6889999999999999999999999999999999999999999999999999999998 333456999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.+.+||
T Consensus 398 ~~s~eE 403 (503)
T KOG2451|consen 398 LVSSEE 403 (503)
T ss_pred eeeccc
Confidence 999887
No 11
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.77 E-value=2.4e-18 Score=120.01 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||+||+.+++++.++++++.++|+++++||...+..|+|++|||+.+++++|.
T Consensus 278 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~ 357 (457)
T PRK09406 278 YDAFAEKFVARMAALRVGDPTDPDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMR 357 (457)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCceEccEEeecCCCCCH
Confidence 58899999999999999999999999999999999999999999999999999999976434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 358 ~~~eE 362 (457)
T PRK09406 358 LYTEE 362 (457)
T ss_pred HhhCC
Confidence 99998
No 12
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=99.77 E-value=2.6e-18 Score=118.55 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCC-CCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRA-GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~-~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.+. ++++||||++.+++++.+++++++++|+++++||......|+|++|||+.++++++
T Consensus 227 ~~~f~~~l~~~~~~~~~G~p~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~ 306 (409)
T PRK10090 227 YDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEM 306 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcccCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEecEEEeCCCCCC
Confidence 58899999999999999999887 88999999999999999999999999999999997653458999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
+++++|
T Consensus 307 ~i~~eE 312 (409)
T PRK10090 307 SIMHEE 312 (409)
T ss_pred HHHhCC
Confidence 999998
No 13
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=99.77 E-value=2.6e-18 Score=121.79 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC--CeEEeCCcccCCCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG--AQLVAGGGRAGDKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G--a~i~~gg~~~~~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.++++++||||++.|++++.++++++.++| +++++||......|+|++||||.+++++
T Consensus 331 ~d~f~~~l~~~~~~l~~G~p~d~~t~~Gpli~~~~~~~v~~~i~~a~~~Ga~a~vl~GG~~~~~~G~~~~PTvl~~~~~d 410 (533)
T TIGR01236 331 WPRFKDELLAELAEVKVGDPDDFSNFMGAVIDERSFVKNVKYIERAKGDPAELTILYGGKYDDSEGYFVEPTVILSKDPT 410 (533)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCcccccCCHHHHHHHHHHHHHHHhcCCceEEEeCCCcCCCCCeEEeeEEEecCCCC
Confidence 68899999999999999999999999999999999999999999999987 7999998754345899999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
|++++||
T Consensus 411 ~~i~~eE 417 (533)
T TIGR01236 411 DPLMVEE 417 (533)
T ss_pred Chhhccc
Confidence 9999998
No 14
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=99.77 E-value=3.7e-18 Score=119.50 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC-CeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G-a~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.++++++||||+..+++++.++|++++++| +++++||......|+|+.|||+.+++++|
T Consensus 292 ~~~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~v~~~~ 371 (472)
T TIGR03374 292 YDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDD 371 (472)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCccCCCCCeEEeeEEEeCCCCCC
Confidence 58899999999999999999999999999999999999999999999999 79999987543458999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
++++||
T Consensus 372 ~i~~eE 377 (472)
T TIGR03374 372 AIVQKE 377 (472)
T ss_pred hhhhCC
Confidence 999998
No 15
>PLN02278 succinic semialdehyde dehydrogenase
Probab=99.76 E-value=4.7e-18 Score=119.65 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++..+|++++++|+++++||.....+|+|++|||+.+++++++
T Consensus 316 ~~~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl~~v~~~~~ 395 (498)
T PLN02278 316 YDKFAEAFSKAVQKLVVGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPTVLGDVTEDML 395 (498)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCceEeeEEEecCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999999875433589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 396 ~~~~E 400 (498)
T PLN02278 396 IFREE 400 (498)
T ss_pred hhhCC
Confidence 99998
No 16
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=99.76 E-value=5.9e-18 Score=118.62 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-----CCCceEeeEEEeeC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFYVQPTVFANV 77 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-----~~g~~i~Ptii~~v 77 (87)
|++|.++|++.++++++|+|.++++.|||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.++
T Consensus 296 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~g~~~~PTvl~~v 375 (481)
T TIGR03216 296 FDRFVAALKARAESLKIGVPDDPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGL 375 (481)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcccccccCCCCceEccEEEeCC
Confidence 5789999999999999999999999999999999999999999999999999999986431 25899999999999
Q ss_pred CCCCcchhcC
Q psy5845 78 RDDMKIAREE 87 (87)
Q Consensus 78 ~~~~~i~~eE 87 (87)
+++++++++|
T Consensus 376 ~~~~~i~~eE 385 (481)
T TIGR03216 376 PDSARVVTEE 385 (481)
T ss_pred CCCCHHHhCC
Confidence 9999999998
No 17
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=99.76 E-value=7.2e-18 Score=119.67 Aligned_cols=85 Identities=44% Similarity=0.695 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.+.++++|+|.+.++++||+|++.+++++.+++++++++|+++++||...+..|+|++|||+.++++++.
T Consensus 352 ~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~g~~i~Ptvl~~v~~d~~ 431 (538)
T PLN02466 352 YDEFVEKAKARALKRVVGDPFKKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDML 431 (538)
T ss_pred HHHHHHHHHHHHHhccCCCCccCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCceEEEEEEEecCCCCCc
Confidence 57788888888889999999999999999999999999999999999999999999876434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 432 i~~eE 436 (538)
T PLN02466 432 IAQDE 436 (538)
T ss_pred hhcCC
Confidence 99998
No 18
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=99.76 E-value=7.1e-18 Score=117.17 Aligned_cols=85 Identities=31% Similarity=0.520 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++++||+|++.+++++.++++++..+|+++++||......|+|++|||+.++++++.
T Consensus 268 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~ 347 (446)
T cd07106 268 YDEFCEALVALAKAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIVDDPPEGSR 347 (446)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeeEcCEEEeCCCCCCH
Confidence 68899999999999999999999999999999999999999999999999999999976434589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 348 i~~~E 352 (446)
T cd07106 348 IVDEE 352 (446)
T ss_pred HHhcC
Confidence 99998
No 19
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=99.75 E-value=9.8e-18 Score=117.55 Aligned_cols=85 Identities=31% Similarity=0.562 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++||||++++++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 296 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 375 (480)
T cd07559 296 YDEFIERAVERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKGYFYEPTLIKGGN 375 (480)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCcEECeEEEeCCC
Confidence 5889999999999999999999999999999999999999999999999999999986532 358999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 376 ~~~~~~~eE 384 (480)
T cd07559 376 NDMRIFQEE 384 (480)
T ss_pred CCCcHHhcC
Confidence 999999998
No 20
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=99.75 E-value=9.3e-18 Score=117.51 Aligned_cols=85 Identities=33% Similarity=0.395 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||.... .+|+|+.|||+.+++
T Consensus 291 ~~~f~~~L~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~ 370 (478)
T cd07085 291 ADEWIPKLVERAKKLKVGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPGYENGNFVGPTILDNVT 370 (478)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCcCCCCeEEcCEEEecCC
Confidence 6889999999999999999999999999999999999999999999999999999986421 358999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 371 ~~~~~~~eE 379 (478)
T cd07085 371 PDMKIYKEE 379 (478)
T ss_pred CCChhhhCc
Confidence 999999988
No 21
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=99.75 E-value=1.2e-17 Score=116.95 Aligned_cols=84 Identities=31% Similarity=0.418 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++++||||++.+++++.+++++++++|+++++||...+..|+|++|||+.++++ |.
T Consensus 291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~~~~-~~ 369 (474)
T cd07130 291 YDEVLERLKKAYKQVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTIVEGLSD-AP 369 (474)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEccEEEecCCC-CH
Confidence 58899999999999999999998899999999999999999999999999999999975434689999999998876 99
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 370 i~~eE 374 (474)
T cd07130 370 IVKEE 374 (474)
T ss_pred HHhCC
Confidence 99998
No 22
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=99.75 E-value=1.1e-17 Score=117.43 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=74.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.++++++|+|.+ ++++|||||+.|++++.++|+++ .+|+++++||..+ ..|+|++|||+.+++++|.
T Consensus 266 ~d~f~~~l~~~~~~~~~G~p~~-~~~~Gpli~~~~~~~v~~~i~~a-~~ga~~~~GG~~~-~~g~~~~PTvl~~v~~~~~ 342 (484)
T PLN02174 266 APKVIDAMKKELETFYGKNPME-SKDMSRIVNSTHFDRLSKLLDEK-EVSDKIVYGGEKD-RENLKIAPTILLDVPLDSL 342 (484)
T ss_pred HHHHHHHHHHHHHhhcCCCCcc-cCCcCCCCCHHHHHHHHHHHHHH-HcCCEEEECCCcC-CCCCEEEEEEEecCCCCCh
Confidence 4788899999999999999977 78999999999999999999998 7899999998654 4689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 343 i~~eE 347 (484)
T PLN02174 343 IMSEE 347 (484)
T ss_pred hhcCC
Confidence 99998
No 23
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=99.75 E-value=1.3e-17 Score=116.59 Aligned_cols=85 Identities=24% Similarity=0.269 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+||+++..+++++..++++++.+|+++++||......|+|++|||+.++++++.
T Consensus 281 ~~~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~v~~~~~ 360 (462)
T PRK13968 281 ASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEMT 360 (462)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCceEECCEEEeCCCCCCh
Confidence 68899999999999999999999999999999999999999999999999999999875433589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 361 ~~~eE 365 (462)
T PRK13968 361 AFREE 365 (462)
T ss_pred HHhCC
Confidence 99998
No 24
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=99.75 E-value=1.2e-17 Score=116.07 Aligned_cols=85 Identities=21% Similarity=0.326 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||......|+|++|||+.++++++.
T Consensus 273 ~d~f~~~l~~~~~~l~~G~~~~~~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptil~~~~~~~~ 352 (453)
T cd07099 273 YDEFVARLVAKARALRPGADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGARSNGGGPFYEPTVLTDVPHDMD 352 (453)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCcCCCCCeEEecEEEecCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999875423689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 353 ~~~~E 357 (453)
T cd07099 353 VMREE 357 (453)
T ss_pred HHhCC
Confidence 99988
No 25
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.75 E-value=9.1e-18 Score=121.43 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=77.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC-
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM- 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~- 81 (87)
|++|.++|++.++++++|+|.+.++++|||||+.+++++.+++++++++|+++++||..+ ..|+|++|||+.++++++
T Consensus 305 ~d~f~~~l~~~~~~l~vG~p~~~~t~~Gpli~~~~~~~i~~~i~~a~~~Ga~vl~GG~~~-~~g~~~~PTvl~~~~~~~~ 383 (663)
T TIGR02278 305 LEAVLKALQARLAKVVLGDPREEGVDMGPLVSLEQRADVEAAVAALLAAGAEVRLGGPGR-LDGAFFPPTLLLAEDPWAG 383 (663)
T ss_pred HHHHHHHHHHHHHhccCCCccccCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCcC-CCCeeEccEEEeeCCcchh
Confidence 588999999999999999999999999999999999999999999999999999998654 358999999999988875
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 384 ~i~~eE 389 (663)
T TIGR02278 384 AVHATE 389 (663)
T ss_pred hHHhcc
Confidence 789887
No 26
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=99.75 E-value=1.2e-17 Score=116.97 Aligned_cols=85 Identities=46% Similarity=0.792 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||......|+|+.|||+.+++++++
T Consensus 298 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 377 (476)
T cd07142 298 YDEFVEKAKARALKRVVGDPFRKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMK 377 (476)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCcCcCHHHHHHHHHHHHHHHhCCCEEEecCCcCCCCCeeEccEEeecCCCCCh
Confidence 57888899999999999999999999999999999999999999999999999999876434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 378 i~~eE 382 (476)
T cd07142 378 IARDE 382 (476)
T ss_pred hhhCC
Confidence 99998
No 27
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=99.75 E-value=1.3e-17 Score=115.57 Aligned_cols=85 Identities=25% Similarity=0.291 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||++++.+++++.+++++++++|+++++||......|+|++|||+.+++++++
T Consensus 251 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptv~~~~~~~~~ 330 (429)
T cd07100 251 YDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLRDELHEQVEEAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGMP 330 (429)
T ss_pred HHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEcCEEeecCCCCCH
Confidence 57889999999999999999999999999999999999999999999999999999875433589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 331 ~~~eE 335 (429)
T cd07100 331 AYDEE 335 (429)
T ss_pred HHhCC
Confidence 99998
No 28
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.74 E-value=1.4e-17 Score=116.54 Aligned_cols=85 Identities=27% Similarity=0.408 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC-CeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G-a~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.++++++||||++.+++++.++++++.++| +++++||......|+|++|||+.++++++
T Consensus 293 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~ 372 (475)
T PRK13473 293 YDDLVAKLAAAVATLKVGDPDDEDTELGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDD 372 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcCCCCceeEcCEEEecCCCCC
Confidence 58899999999999999999999999999999999999999999999999 99999997643358999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 373 ~~~~eE 378 (475)
T PRK13473 373 EIVQRE 378 (475)
T ss_pred hhhhCC
Confidence 999998
No 29
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=99.74 E-value=1.5e-17 Score=116.35 Aligned_cols=85 Identities=38% Similarity=0.585 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.++++++|||+++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++++
T Consensus 291 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~ 370 (473)
T cd07097 291 HDRFVEALVERTKALKVGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEGYYLAPALFAGVTND 370 (473)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEeccCCCC
Confidence 5889999999999999999999999999999999999999999999999999999986532 25789999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 371 ~~~~~eE 377 (473)
T cd07097 371 MRIAREE 377 (473)
T ss_pred ChhhhCC
Confidence 9999998
No 30
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=99.74 E-value=1.4e-17 Score=116.68 Aligned_cols=85 Identities=35% Similarity=0.643 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 370 (475)
T cd07117 291 YDEFVAKLKEKFENVKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVT 370 (475)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcccCcCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCeEEeeEEeecCC
Confidence 5889999999999999999999999999999999999999999999999999999986532 258999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++++++++|
T Consensus 371 ~~~~i~~eE 379 (475)
T cd07117 371 NDMRVAQEE 379 (475)
T ss_pred CCChhhhCC
Confidence 999999998
No 31
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=99.74 E-value=1.5e-17 Score=117.44 Aligned_cols=84 Identities=26% Similarity=0.373 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||||+..+++++.+++++++++|+++++||...+..|+|++|||+ +++++|.
T Consensus 313 ~d~f~~~l~~~~~~l~vG~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl-~v~~~~~ 391 (508)
T PLN02315 313 YDDVLEQLLTVYKQVKIGDPLEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTIV-EISPDAD 391 (508)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEecEEE-ecCCCCh
Confidence 688999999999999999999999999999999999999999999999999999998754346899999999 6999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 392 i~~eE 396 (508)
T PLN02315 392 VVKEE 396 (508)
T ss_pred HHhCC
Confidence 99998
No 32
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=99.74 E-value=1.4e-17 Score=116.90 Aligned_cols=85 Identities=33% Similarity=0.518 Sum_probs=78.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++|||||+.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 297 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~v~ 376 (488)
T PRK13252 297 KAAFEARLLERVERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFVAPTVFTDCT 376 (488)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCeEEccEEeccCC
Confidence 5889999999999999999999999999999999999999999999999999999986421 258999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++++++++|
T Consensus 377 ~~~~i~~eE 385 (488)
T PRK13252 377 DDMTIVREE 385 (488)
T ss_pred CCChHhhCC
Confidence 999999998
No 33
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=99.74 E-value=1.6e-17 Score=115.70 Aligned_cols=85 Identities=38% Similarity=0.642 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++|||+++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 272 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~ 351 (456)
T cd07107 272 YDEVLARVVERVAAIKVGDPTDPATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVT 351 (456)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEECCC
Confidence 5889999999999999999999999999999999999999999999999999999986431 358999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++++++||
T Consensus 352 ~~~~i~~eE 360 (456)
T cd07107 352 PGMRIAREE 360 (456)
T ss_pred CCChhhhCC
Confidence 999999998
No 34
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=99.74 E-value=2e-17 Score=115.80 Aligned_cols=85 Identities=45% Similarity=0.738 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||+++..+++++.++++++.++|+++++||..+...|+|++|||+.++++++.
T Consensus 298 ~~~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~vl~gg~~~~~~~~~~~Ptvl~~v~~~~~ 377 (476)
T cd07091 298 YDEFVEKFKARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQPTVFTDVKDDMK 377 (476)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceECcEEecCCCCCCh
Confidence 57889999999999999999999999999999999999999999999999999999876534689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 378 ~~~eE 382 (476)
T cd07091 378 IAKEE 382 (476)
T ss_pred hhhCC
Confidence 99998
No 35
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=99.74 E-value=1.8e-17 Score=116.15 Aligned_cols=82 Identities=35% Similarity=0.556 Sum_probs=74.6
Q ss_pred hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|+.|.++|+++ ++ +++||+.++.+++|||||+.|++++.++|++++++|++++.||... . |+|++|||+.+++++|
T Consensus 289 ~d~f~~~l~~~-~~~l~~Gd~~d~~t~~Gpli~~~~~~~v~~~i~~a~~~G~~~~~Gg~~~-~-g~~~~PTv~~~v~~~~ 365 (472)
T COG1012 289 YDEFVERLVAR-AASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGKRP-G-GYFVEPTILEGVTPDM 365 (472)
T ss_pred HHHHHHHHHHH-HhcCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCEEEeCCcCC-C-CeEECCEEEecCCCCC
Confidence 57888999988 65 8899877889999999999999999999999999999999988733 3 9999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.+++||
T Consensus 366 ~i~~eE 371 (472)
T COG1012 366 RIAREE 371 (472)
T ss_pred hhhhcc
Confidence 999998
No 36
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=99.74 E-value=2.2e-17 Score=115.72 Aligned_cols=85 Identities=33% Similarity=0.482 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC--CCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~--~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||..... .|+|++|||+.+++++
T Consensus 292 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~ 371 (478)
T cd07086 292 YDEFLERLVKAYKQVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIVTGVTDD 371 (478)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEecCCCCC
Confidence 58899999999999999999999999999999999999999999999999999999875422 5889999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 372 ~~~~~eE 378 (478)
T cd07086 372 ARIVQEE 378 (478)
T ss_pred ChhhcCC
Confidence 9999998
No 37
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=99.73 E-value=2.6e-17 Score=115.50 Aligned_cols=85 Identities=34% Similarity=0.646 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.++++++|+|.+++++|||+|++.+++++.++|++++++|+++++||......|+|+.|||+.++++++.
T Consensus 301 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 380 (481)
T cd07143 301 YDKFVKRFKEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIEPTIFTDVTEDMK 380 (481)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCceEEeeEEEecCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999999876434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 381 ~~~eE 385 (481)
T cd07143 381 IVKEE 385 (481)
T ss_pred hhhcC
Confidence 99998
No 38
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=99.73 E-value=2.5e-17 Score=114.94 Aligned_cols=85 Identities=33% Similarity=0.520 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.++++++
T Consensus 289 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~vl~gg~~~~~~~g~~~~Ptvl~~~~~~~ 368 (468)
T cd07088 289 YDEFMEKLVEKMKAVKVGDPFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDM 368 (468)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceeEcCEEEecCCCCC
Confidence 5789999999999999999999899999999999999999999999999999999987542 358999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 369 ~~~~~E 374 (468)
T cd07088 369 EIVQEE 374 (468)
T ss_pred chhhCC
Confidence 999998
No 39
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=99.73 E-value=2.1e-17 Score=115.09 Aligned_cols=85 Identities=35% Similarity=0.570 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||.... ..++|+.|||+.+++++
T Consensus 276 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~~v~~a~~~Ga~~~~gg~~~~~~~~~~~~~Ptvl~~v~~~ 355 (456)
T cd07110 276 ADAFLERLATAAEAIRVGDPLEEGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTD 355 (456)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcccccCCCCcCCCEEEecCCCC
Confidence 6889999999999999999999999999999999999999999999999999999987542 35889999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 356 ~~i~~~E 362 (456)
T cd07110 356 SRIWREE 362 (456)
T ss_pred ChHhhCC
Confidence 9999998
No 40
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=99.73 E-value=2.3e-17 Score=115.47 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+|||+++++++++.+++++++++|+++++||.. .|+|++||||.+++++|+
T Consensus 293 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~PTvl~~v~~~~~ 369 (472)
T TIGR03250 293 ADRFTELLVEKTRAWRYGDPMDPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLGNVR---DGALYAPTVLDRVDPSMT 369 (472)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCc---CCEEEcCEEEeCCCCCCh
Confidence 57889999999999999999999999999999999999999999999999999999864 488999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 370 i~~eE 374 (472)
T TIGR03250 370 LVREE 374 (472)
T ss_pred HHhCC
Confidence 99998
No 41
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.73 E-value=2.8e-17 Score=114.61 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=77.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+|||+++.+++++.+++++++++|+++++||... .++|++|||+.+++++++
T Consensus 278 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~--~~~~~~Ptvl~~~~~~~~ 355 (455)
T cd07148 278 ADDFAQRLAAAAEKLVVGDPTDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRL--SDTTYAPTVLLDPPRDAK 355 (455)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccC--CCCeEcCEEEeCCCCCCH
Confidence 578999999999999999999999999999999999999999999999999999998764 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 356 ~~~eE 360 (455)
T cd07148 356 VSTQE 360 (455)
T ss_pred HHhCC
Confidence 99998
No 42
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=99.73 E-value=3.2e-17 Score=115.04 Aligned_cols=85 Identities=32% Similarity=0.468 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-------CCCceEeeEEEe
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-------DKGFYVQPTVFA 75 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-------~~g~~i~Ptii~ 75 (87)
|++|.++|++.++++++|+|.++++.+|||||+.+++++.+++++++++|+++++||.... ..|+|++|||+.
T Consensus 291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~~~g~~~~Ptvl~ 370 (488)
T TIGR02299 291 AEDFVEKLVERVRAIRVGHPLDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFT 370 (488)
T ss_pred HHHHHHHHHHHHhhCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCcccccccCCCCeEEccEEEe
Confidence 6889999999999999999999999999999999999999999999999999999986531 248899999999
Q ss_pred eCCCCCcchhcC
Q psy5845 76 NVRDDMKIAREE 87 (87)
Q Consensus 76 ~v~~~~~i~~eE 87 (87)
++++++.++++|
T Consensus 371 ~~~~~~~i~~eE 382 (488)
T TIGR02299 371 GADNHMRIAQEE 382 (488)
T ss_pred cCCCCCchhhCC
Confidence 999999999998
No 43
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=99.73 E-value=3.6e-17 Score=113.85 Aligned_cols=85 Identities=33% Similarity=0.640 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||..+...|+|++|||+.+++++++
T Consensus 273 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 352 (453)
T cd07115 273 YDEFLERFTSLARSLRPGDPLDPKTQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMR 352 (453)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceECCEEEecCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999999875433688999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 353 ~~~eE 357 (453)
T cd07115 353 IAQEE 357 (453)
T ss_pred HhhCC
Confidence 99998
No 44
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=99.73 E-value=3.6e-17 Score=114.11 Aligned_cols=85 Identities=40% Similarity=0.666 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.+.++.+||+|+..+++++.+++++++++|+++++||.... ..|+|++|||+.+++++
T Consensus 279 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gp~i~~~~~~~v~~~i~~a~~~Ga~~l~gg~~~~~~~~g~~~~Ptvl~~~~~~ 358 (459)
T cd07089 279 YDEVVEALAAAFEALPVGDPADPGTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDND 358 (459)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEECCEEEEcCCCC
Confidence 5889999999999999999999999999999999999999999999999999999987542 26899999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
++++++|
T Consensus 359 ~~~~~eE 365 (459)
T cd07089 359 MRIAQEE 365 (459)
T ss_pred CHHHhCC
Confidence 9999998
No 45
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=99.73 E-value=3.7e-17 Score=113.84 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.+.++++|||+|+++++|+..++++++++|+++++||.... ..++|++|||+.++++++
T Consensus 272 ~d~f~~~L~~~~~~~~~G~~~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~vl~gg~~~~~~~~~~~~Ptvl~~v~~~~ 351 (454)
T cd07101 272 YDEFVRRFVARTRALRLGAALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFYEPTVLTGVTEDM 351 (454)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCCeEEcCEEEeCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999986432 257999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 352 ~~~~eE 357 (454)
T cd07101 352 ELFAEE 357 (454)
T ss_pred HHHhCC
Confidence 999998
No 46
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=99.73 E-value=3.8e-17 Score=113.92 Aligned_cols=85 Identities=33% Similarity=0.538 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.+.++++||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++.++
T Consensus 275 ~d~f~~~L~~~~~~l~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~g~~~~Ptvl~~~~~~~ 354 (454)
T cd07118 275 ADAFVAAVVARSRKVRVGDPLDPETKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDM 354 (454)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCeEEeCEEEeCCCCCC
Confidence 5789999999999999999999899999999999999999999999999999999997643 358999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 355 ~~~~eE 360 (454)
T cd07118 355 AIAREE 360 (454)
T ss_pred HHHhCC
Confidence 999998
No 47
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.73 E-value=3.7e-17 Score=115.69 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++|+|.++++.+|||||+.+++++..++++++++|+++++||.... ..|+|+.|||+.++++++
T Consensus 308 ~d~f~~~L~~~~~~l~~G~~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~~g~~~~Ptvl~~v~~~~ 387 (524)
T PRK09407 308 YDEFVRAFVAAVRAMRLGAGYDYSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFYEPTVLTGVTPDM 387 (524)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCceEeCEEEeCCCCCC
Confidence 6889999999999999999999999999999999999999999999999999999986432 247999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 388 ~i~~eE 393 (524)
T PRK09407 388 ELAREE 393 (524)
T ss_pred hHHhCC
Confidence 999998
No 48
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=99.73 E-value=3.8e-17 Score=114.49 Aligned_cols=85 Identities=35% Similarity=0.597 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 290 ~d~f~~~l~~~~~~~~~G~~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 369 (482)
T cd07119 290 HDKFVAALAERAKKIKLGNGLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDELAKGYFVEPTIFDDVD 369 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceECCEEEecCC
Confidence 5789999999999999999999999999999999999999999999999999999986532 258999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 370 ~~~~i~~eE 378 (482)
T cd07119 370 RTMRIVQEE 378 (482)
T ss_pred CCChHhhCC
Confidence 999999998
No 49
>PLN02467 betaine aldehyde dehydrogenase
Probab=99.72 E-value=4.4e-17 Score=114.89 Aligned_cols=85 Identities=32% Similarity=0.540 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.++++.+|||+++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++++
T Consensus 307 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~ 386 (503)
T PLN02467 307 ASEFLEKLVKWAKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGFFIEPTIITDVTTS 386 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCCCeEEeeEEEeCCCCC
Confidence 6889999999999999999999999999999999999999999999999999999986532 25899999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 387 ~~i~~eE 393 (503)
T PLN02467 387 MQIWREE 393 (503)
T ss_pred ChHhhCC
Confidence 9999998
No 50
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=99.72 E-value=5.6e-17 Score=113.01 Aligned_cols=85 Identities=26% Similarity=0.498 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.+.++++|||+++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 275 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~ 354 (457)
T cd07114 275 YDEFVERLVARARAIRVGDPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVT 354 (457)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCCEECCEEEeCCC
Confidence 5789999999999999999999999999999999999999999999999999999986542 247999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 355 ~~~~~~~~E 363 (457)
T cd07114 355 NDMRIAQEE 363 (457)
T ss_pred CCChhhhcC
Confidence 999999988
No 51
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=99.72 E-value=5.4e-17 Score=113.24 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.++++
T Consensus 274 ~~~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~~~~~g~~~~~~~~~g~~~~Ptvl~~~~~ 353 (455)
T cd07120 274 ADEVRDRLAARLAAVKVGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDP 353 (455)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCcCCccCHHHHHHHHHHHHHHHHCCCEEEeCCccCcccCCCCceECCEEEecCCC
Confidence 6889999999999999999999999999999999999999999999999999999775322 2589999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++.++++|
T Consensus 354 d~~i~~~E 361 (455)
T cd07120 354 DADIVQEE 361 (455)
T ss_pred CChhhhCc
Confidence 99999988
No 52
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=99.72 E-value=5.8e-17 Score=113.25 Aligned_cols=85 Identities=34% Similarity=0.596 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.+.++++|||+++.+++++.+++++++++|+++++||.... ..++|++|||+.+++++
T Consensus 292 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~~~~~Ptvl~~v~~~ 371 (471)
T cd07139 292 YDEVVEALAAAVAALKVGDPLDPATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDND 371 (471)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEEecCCCc
Confidence 5889999999999999999999999999999999999999999999999999999986532 25889999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
++++++|
T Consensus 372 ~~~~~eE 378 (471)
T cd07139 372 MRIAQEE 378 (471)
T ss_pred chHHhCc
Confidence 9999998
No 53
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=99.72 E-value=6.8e-17 Score=112.31 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=77.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++++||++++.+++++.++++++. +|+++++||......|+|++|||+.+++.++.
T Consensus 273 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~i~~~i~~a~-~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 351 (450)
T cd07092 273 YDEFVAALVEAVSAIRVGDPDDEDTEMGPLNSAAQRERVAGFVERAP-AHARVLTGGRRAEGPGYFYEPTVVAGVAQDDE 351 (450)
T ss_pred HHHHHHHHHHHHhhCCcCCCCCCCCccCcccCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCCCccEEeeEEEEcCCCCCh
Confidence 58899999999999999999999999999999999999999999998 99999999875434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 352 ~~~~E 356 (450)
T cd07092 352 IVQEE 356 (450)
T ss_pred HHhCC
Confidence 99998
No 54
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=99.72 E-value=5.3e-17 Score=113.10 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|+++++||..+ .|+|++|||+.+++++++
T Consensus 279 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~vl~gg~~~--~g~~~~Ptvl~~~~~~~~ 356 (456)
T cd07145 279 YDKFLKLLVEKVKKLKVGDPLDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGKRD--EGSFFPPTVLENDTPDMI 356 (456)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCC--CCeEECCEeecCCCCCCh
Confidence 578899999999999999999999999999999999999999999999999999998654 389999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 357 i~~~E 361 (456)
T cd07145 357 VMKEE 361 (456)
T ss_pred HhhCC
Confidence 99988
No 55
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=99.71 E-value=7.1e-17 Score=112.74 Aligned_cols=85 Identities=40% Similarity=0.562 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.+++++|||++|+.+++++.++|++++++|+++++||.... ..|+|+.|||+.+++++
T Consensus 282 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~ 361 (462)
T cd07112 282 KDEFLEKVVAAAREWKPGDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVTPD 361 (462)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEecCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999986531 25889999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
++++++|
T Consensus 362 ~~~~~eE 368 (462)
T cd07112 362 MRIAREE 368 (462)
T ss_pred ChHHhCC
Confidence 9999998
No 56
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=99.71 E-value=8.1e-17 Score=113.04 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|++++.||......|+|+.|||+.++++++.
T Consensus 302 ~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~ 381 (480)
T cd07111 302 AEELIRKLKERMSHLRVGDPLDKAIDMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASR 381 (480)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence 68899999999999999999999999999999999999999999999999999998864324689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 382 i~~eE 386 (480)
T cd07111 382 IAQEE 386 (480)
T ss_pred hhcCC
Confidence 99988
No 57
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=99.71 E-value=8.2e-17 Score=112.18 Aligned_cols=85 Identities=31% Similarity=0.479 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccC----CCCceEeeEEEeeC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGGGRAG----DKGFYVQPTVFANV 77 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~----~~g~~i~Ptii~~v 77 (87)
|++|.++|++.++++++|+|.+.++++||||++.+++++.++++++++ +|+++++||..+. ..|+|++|||+.++
T Consensus 273 ~~~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~~ga~vl~gG~~~~~~~~~~g~~~~Ptvl~~~ 352 (457)
T cd07108 273 YDAFLEKLVAKLSKLKIGDPLDEATDIGAIISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGV 352 (457)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCcCccCCCCCceEECCEEEecC
Confidence 578999999999999999999999999999999999999999999998 9999999986531 35899999999999
Q ss_pred CCCCcchhcC
Q psy5845 78 RDDMKIAREE 87 (87)
Q Consensus 78 ~~~~~i~~eE 87 (87)
++++.+++||
T Consensus 353 ~~~~~~~~eE 362 (457)
T cd07108 353 DNEWRLAREE 362 (457)
T ss_pred CCCChhhhcC
Confidence 9999999998
No 58
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=99.71 E-value=8.4e-17 Score=111.63 Aligned_cols=85 Identities=13% Similarity=0.040 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
-+++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||...+..|+|++|||+ ++++++
T Consensus 253 i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~v~~a~~~ga~~l~gg~~~~~~g~~~~Ptv~-~v~~~~ 331 (431)
T cd07095 253 VGDAFLERLVEAAKRLRIGAPDAEPPFMGPLIIAAAAARYLLAQQDLLALGGEPLLAMERLVAGTAFLSPGII-DVTDAA 331 (431)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCEEEeCCCcCCCCCeEEcCEEE-ecCCCC
Confidence 3688999999999999999999888999999999999999999999999999999998654346899999999 699999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 332 ~i~~eE 337 (431)
T cd07095 332 DVPDEE 337 (431)
T ss_pred hHHhCC
Confidence 999998
No 59
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=99.71 E-value=1.1e-16 Score=111.87 Aligned_cols=85 Identities=36% Similarity=0.579 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 289 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~~~ 368 (467)
T TIGR01804 289 KEKFEARLVERTKRIKLGDGFDEATEMGPLISAEHRDKVESYIEKGKEEGATLACGGKRPEREGLQNGFFIEPTVFTDCT 368 (467)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCccCccCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCeEEeeEEEeCCC
Confidence 5789999999999999999999999999999999999999999999999999999986432 248999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++++++||
T Consensus 369 ~~~~~~~eE 377 (467)
T TIGR01804 369 DDMTIVREE 377 (467)
T ss_pred CCChHHhCC
Confidence 999999988
No 60
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=99.71 E-value=9.6e-17 Score=111.83 Aligned_cols=85 Identities=35% Similarity=0.560 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-----CCCceEeeEEEeeC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFYVQPTVFANV 77 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-----~~g~~i~Ptii~~v 77 (87)
|++|.++|++.++++++|+|.++++++||+||+.+++++.+++++++++|+++++||.... ..|+|++|||+.++
T Consensus 271 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~g~~~~Ptvl~~~ 350 (457)
T cd07090 271 KDEFTERLVERTKKIRIGDPLDEDTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDC 350 (457)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEECCCcCcccccCCCCeeECCEEEecC
Confidence 5889999999999999999998899999999999999999999999999999999986531 25889999999999
Q ss_pred CCCCcchhcC
Q psy5845 78 RDDMKIAREE 87 (87)
Q Consensus 78 ~~~~~i~~eE 87 (87)
++++.++++|
T Consensus 351 ~~~~~~~~~E 360 (457)
T cd07090 351 TDDMTIVREE 360 (457)
T ss_pred CCCChHHhCC
Confidence 9999999987
No 61
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=99.70 E-value=1.1e-16 Score=112.20 Aligned_cols=85 Identities=35% Similarity=0.620 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.+++ +++|+|.+++++|||+|++++++++.+++++++++|+++++||.... ..|+|++|||+.+++
T Consensus 300 ~d~f~~~l~~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~v~ 379 (484)
T cd07144 300 YDKFVEKFVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGKGYFIPPTIFTDVP 379 (484)
T ss_pred HHHHHHHHHHHHHhhCCcCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCcccCCCCceECCEEEeCCC
Confidence 57888899999885 88999999999999999999999999999999999999999987542 258999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.+++||
T Consensus 380 ~~~~~~~eE 388 (484)
T cd07144 380 QDMRIVKEE 388 (484)
T ss_pred CCCchhhCC
Confidence 999999998
No 62
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=99.70 E-value=7.6e-17 Score=112.48 Aligned_cols=85 Identities=29% Similarity=0.448 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCC---cccCCCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg---~~~~~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.++++++||+++..+++++.+++++++.+|+++++|| ......|+|++|||+.++++
T Consensus 282 ~~~f~~~l~~~~~~l~~g~~~~~~~~~gpl~~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~~~~ 361 (462)
T PF00171_consen 282 YDEFVEALKERVAKLRVGDPLDESTDVGPLISKAQRERVKALIEDAVAEGAKVLCGGEPQEADPENGFFIPPTVLEDVPP 361 (462)
T ss_dssp HHHHHHHHHHHHHTSEBSSTTSTTCSBCHCSSHHHHHHHHHHHHHHHHTTSEEEEETSSSSBCSSSSTEEEEEEEESEHT
T ss_pred cchhhhhhhhccccccccCCccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999999999999989999999999999999999999999999999988 23335789999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
+|+++++|
T Consensus 362 ~~~~~~~E 369 (462)
T PF00171_consen 362 DMPIMQEE 369 (462)
T ss_dssp TSHHHHSC
T ss_pred cccccccc
Confidence 99999988
No 63
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=99.70 E-value=1.2e-16 Score=111.61 Aligned_cols=85 Identities=29% Similarity=0.438 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|+++++++++|+|.++++++|||+++.+++++.+++++++.+|+++++||.... ..|+|+.|||+.+++
T Consensus 279 ~d~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 358 (465)
T cd07098 279 YDKLLEILTDRVQALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFPPTLLVDVT 358 (465)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCcCcCCCCcEEcCEEEeCCC
Confidence 6889999999999999999999999999999999999999999999999999999885421 258999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++++++++|
T Consensus 359 ~~~~~~~~E 367 (465)
T cd07098 359 PDMKIAQEE 367 (465)
T ss_pred CCCHHHhCC
Confidence 999999987
No 64
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=99.70 E-value=9.8e-17 Score=113.27 Aligned_cols=84 Identities=33% Similarity=0.471 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+|.++++.+|||+++.+++++.++|+++++ |+++++||.... ..|+|+.|||+.+++++
T Consensus 328 ~~~f~~~l~~~~~~~~~g~p~d~~~~~Gpli~~~~~~~v~~~i~~a~~-g~~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~ 406 (512)
T cd07124 328 YDEFLERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKS-EGRLLLGGEVLELAAEGYFVQPTIFADVPPD 406 (512)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcccCCcCHHHHHHHHHHHHHHHh-CCEEEecCccCCCCCCCceEcCEEEecCCCC
Confidence 578899999999999999999999999999999999999999999988 899999987642 26899999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.+++||
T Consensus 407 ~~i~~eE 413 (512)
T cd07124 407 HRLAQEE 413 (512)
T ss_pred ChHHhCC
Confidence 9999998
No 65
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=99.70 E-value=1e-16 Score=112.00 Aligned_cols=85 Identities=35% Similarity=0.583 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.+.++++||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.++++
T Consensus 286 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~v~~a~~~Ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~ 365 (466)
T cd07138 286 YAEAEEIAAAAAEAYVVGDPRDPATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTP 365 (466)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCcCCCCceECCEEecCCCC
Confidence 6889999999999999999999999999999999999999999999999999999986321 2589999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++++++||
T Consensus 366 ~~~i~~eE 373 (466)
T cd07138 366 DMTIAREE 373 (466)
T ss_pred CChHHhCC
Confidence 99999998
No 66
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=99.70 E-value=1.3e-16 Score=111.73 Aligned_cols=85 Identities=39% Similarity=0.611 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.++++++||++++.+++++.+++++|+++|+++++||.... ..|+|++|||+.+++
T Consensus 291 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 370 (478)
T cd07131 291 YDEFLKRFVERAKRLRVGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTVFTDVT 370 (478)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCcCCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEeCCC
Confidence 5789999999999999999999999999999999999999999999999999999986432 258899999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++++++++|
T Consensus 371 ~~~~~~~~E 379 (478)
T cd07131 371 PDMRIAQEE 379 (478)
T ss_pred CCChHhhCC
Confidence 999999988
No 67
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=99.70 E-value=1.2e-16 Score=111.08 Aligned_cols=85 Identities=32% Similarity=0.511 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||+++..+++++.+++++++++|+++++||......|+|++|||+.++++++.
T Consensus 273 ~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~g~~~~Ptil~~~~~~~~ 352 (451)
T cd07103 273 YDEFVEKLVERVKKLKVGNGLDEGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDML 352 (451)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCcCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCcEECCEEeeCCCCcCH
Confidence 68899999999999999999999999999999999999999999999999999999875433689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 353 ~~~~E 357 (451)
T cd07103 353 IMNEE 357 (451)
T ss_pred HHhCC
Confidence 99988
No 68
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=99.70 E-value=1.4e-16 Score=112.23 Aligned_cols=84 Identities=37% Similarity=0.511 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.++++++++.| ++++||......|+|+.|||+.++++++.
T Consensus 316 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~g-~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~ 394 (500)
T cd07083 316 YEPVLERLLKRAERLSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKRLEGEGYFVAPTVVEEVPPKAR 394 (500)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-EEEeCCCcCCCCCeEEccEEEeCCCCCCh
Confidence 68899999999999999999999999999999999999999999998876 89999876434589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 395 ~~~eE 399 (500)
T cd07083 395 IAQEE 399 (500)
T ss_pred HhhCC
Confidence 99998
No 69
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=99.70 E-value=1.4e-16 Score=110.71 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc---CCCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA---GDKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~---~~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.+.++.+||+|+..+++++.+++++++++|+++++||... +..|+|++|||+.++++
T Consensus 271 ~~~f~~~L~~~~~~l~vg~p~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~vl~gg~~~~~~~~~g~~~~Ptvl~~~~~ 350 (452)
T cd07102 271 YDAFVEAFVAVVKGYKLGDPLDPSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDH 350 (452)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCCceEcCEEEecCCC
Confidence 688999999999999999999999999999999999999999999999999999998642 13589999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
+|+++++|
T Consensus 351 ~~~i~~~E 358 (452)
T cd07102 351 SMRVMREE 358 (452)
T ss_pred CChhhhcC
Confidence 99999998
No 70
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=99.70 E-value=1.2e-16 Score=111.57 Aligned_cols=82 Identities=32% Similarity=0.435 Sum_probs=76.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+||+|++.+++++.+++++++++|+++++||.. .|+|++|||+.++++++.
T Consensus 287 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~ 363 (465)
T cd07151 287 YDEFVEKFVERVKALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEA---EGNVLEPTVLSDVTNDME 363 (465)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHhCCCEEEecCCc---CCEEEccEEEeCCCCCCc
Confidence 57889999999999999999988999999999999999999999999999999999863 588999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 364 ~~~eE 368 (465)
T cd07151 364 IAREE 368 (465)
T ss_pred hhhCc
Confidence 99998
No 71
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=99.70 E-value=1.3e-16 Score=112.02 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=75.1
Q ss_pred hHHHHHHHHhhccccccCCC-CCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 4 TSAAVFTKDLDKTNYVTQGL-RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~-~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
++|.++|++.++++++|+|. ++++++||||+..+++++.+++++++++|+++++||...+.+|+|++|||+ ++++++.
T Consensus 292 d~f~~~l~~~~~~~~vG~p~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl-~v~~~~~ 370 (487)
T PRK09457 292 DAFLARLVAVAKRLTVGRWDAEPQPFMGAVISEQAAQGLVAAQAQLLALGGKSLLEMTQLQAGTGLLTPGII-DVTGVAE 370 (487)
T ss_pred HHHHHHHHHHHhcCcCCCCCcCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccCCCCeeEecEEe-ccCCCCh
Confidence 88999999999999999986 678899999999999999999999999999999987643345799999999 7999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 371 i~~eE 375 (487)
T PRK09457 371 LPDEE 375 (487)
T ss_pred HHhCC
Confidence 99998
No 72
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=99.70 E-value=1.6e-16 Score=110.56 Aligned_cols=82 Identities=28% Similarity=0.384 Sum_probs=76.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.++++++|+|.+.++.+||+++..+++++.+++++++++|+++++||.. .++|++|||+.++++++.
T Consensus 277 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~ 353 (453)
T cd07094 277 YDEFIEAFVAAVKKLKVGDPLDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGER---DGALFKPTVLEDVPRDTK 353 (453)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCccC---CCeEEeCEEEeCCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999998864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 354 i~~~E 358 (453)
T cd07094 354 LSTEE 358 (453)
T ss_pred hhhCC
Confidence 99998
No 73
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=99.69 E-value=1.7e-16 Score=110.38 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=76.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++++||+++..+++++.+++++++++|+++++||.. .|+|++|||+.++++++.
T Consensus 275 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~ 351 (451)
T cd07150 275 YDEFVKKFVARASKLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKY---DGNFYQPTVLTDVTPDMR 351 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCcc---CCcEEcCEEEeCCCCCCH
Confidence 68899999999999999999998999999999999999999999999999999999864 488999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 352 ~~~~E 356 (451)
T cd07150 352 IFREE 356 (451)
T ss_pred HHhCC
Confidence 99998
No 74
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=99.69 E-value=1.7e-16 Score=112.07 Aligned_cols=84 Identities=30% Similarity=0.505 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++| ++++||......|+|++|||+.+++++|.
T Consensus 329 ~d~f~~~L~~~~~~l~~g~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~g-~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~ 407 (511)
T TIGR01237 329 YDAVVERFVEATRSLNVGPTDDPSTQVGPVIDQKSQAKIQEYIEQGKAEG-ELAIGGCDAPSEGYFIGPTIFKDVDRHAR 407 (511)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCC-cEEECCccCCCCCeEEcCEEEeCCCCCCh
Confidence 67899999999999999999999999999999999999999999999888 78888865433589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 408 i~~eE 412 (511)
T TIGR01237 408 LAQEE 412 (511)
T ss_pred HhhCC
Confidence 99998
No 75
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=99.69 E-value=1.9e-16 Score=110.99 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc--C--CCCceEeeEEEeeCCC
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--G--DKGFYVQPTVFANVRD 79 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~--~--~~g~~i~Ptii~~v~~ 79 (87)
++|.++|++.++++++|+|.+++++|||||+.++++++.+++++++++|+++++||... . ..|+|+.|||+.++++
T Consensus 291 ~~f~~~l~~~~~~~~~G~~~~~~~~~Gp~i~~~~~~~~~~~i~~a~~~Ga~il~gg~~~~~~~~~~g~~~~Ptvl~~~~~ 370 (477)
T TIGR01722 291 DEWVPEIRERAEKIRIGPGDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGYEEGNWVGPTLLERVPP 370 (477)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeEECCEEeeCCCC
Confidence 67889999999999999999999999999999999999999999999999999998642 1 2589999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++.++++|
T Consensus 371 ~~~~~~eE 378 (477)
T TIGR01722 371 TMKAYQEE 378 (477)
T ss_pred CChhhhCC
Confidence 99999988
No 76
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=99.69 E-value=1.8e-16 Score=111.12 Aligned_cols=84 Identities=31% Similarity=0.431 Sum_probs=76.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++++|+|.+.++.+||++++.|++++.+++++++++|+++++||.... ..|+|+.|||+.+++
T Consensus 296 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~ 375 (479)
T cd07116 296 YDRFMERALERVKAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGGGYYVPTTFKGGN 375 (479)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeeecCeEEccCC
Confidence 5788999999999999999999999999999999999999999999999999999986531 258899999999875
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++.+++||
T Consensus 376 -~~~~~~eE 383 (479)
T cd07116 376 -KMRIFQEE 383 (479)
T ss_pred -CChhhhcC
Confidence 89999998
No 77
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.69 E-value=1.4e-16 Score=115.46 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=75.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-------CCCCceEeeEEEe
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-------GDKGFYVQPTVFA 75 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-------~~~g~~i~Ptii~ 75 (87)
|++|.++|++.++++++|+|.+.++++|||||+.|++++.++|++|+++ +++++||... ...|+|++|||+.
T Consensus 309 ~d~f~~~l~~~~~~l~vG~p~d~~t~~GPli~~~~~~~i~~~i~~a~~~-a~vl~Gg~~~~~~~~~~~~~g~f~~PTvl~ 387 (675)
T PRK11563 309 VDAVIEALRARLAKVVVGDPRLEGVRMGALASLEQREDVREKVAALLAA-AEIVFGGPDSFEVVGADAEKGAFFPPTLLY 387 (675)
T ss_pred HHHHHHHHHHHHhcCccCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhC-CEEEECCcccccccCCCCCCCeeECCEEEe
Confidence 6889999999999999999999999999999999999999999999998 9999998521 1258999999999
Q ss_pred eCCC--CCcchhcC
Q psy5845 76 NVRD--DMKIAREE 87 (87)
Q Consensus 76 ~v~~--~~~i~~eE 87 (87)
++++ ++.++++|
T Consensus 388 ~v~~~~~~~i~~eE 401 (675)
T PRK11563 388 CDDPLEAPAVHDVE 401 (675)
T ss_pred ccCchhhhhHhhcc
Confidence 9998 57899987
No 78
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=99.69 E-value=2e-16 Score=109.93 Aligned_cols=82 Identities=24% Similarity=0.343 Sum_probs=76.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||.. .|+|++|||+.+++++++
T Consensus 266 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~ 342 (443)
T cd07152 266 ADAYTAKLAAKAKHLPVGDPATGQVALGPLINARQLDRVHAIVDDSVAAGARLEAGGTY---DGLFYRPTVLSGVKPGMP 342 (443)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHhCCCEEEeccCc---CCEEEcCEEEecCCCCCh
Confidence 57889999999999999999988999999999999999999999999999999999864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 343 ~~~eE 347 (443)
T cd07152 343 AFDEE 347 (443)
T ss_pred hhhcc
Confidence 99998
No 79
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=99.69 E-value=2.1e-16 Score=110.16 Aligned_cols=82 Identities=26% Similarity=0.305 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+|||+++.+++++.+++++++++|+++++||.. .|+|++|||+.++++++.
T Consensus 274 ~d~f~~~l~~~~~~l~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~ 350 (451)
T cd07146 274 ADEFVDLLVEKSAALVVGDPMDPATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQR---QGALYAPTVLDHVPPDAE 350 (451)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCc---CCEEEcCEEeecCCCCCH
Confidence 57899999999999999999988999999999999999999999999999999999864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 351 ~~~eE 355 (451)
T cd07146 351 LVTEE 355 (451)
T ss_pred HHhCC
Confidence 99998
No 80
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=99.68 E-value=2.4e-16 Score=111.42 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=75.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-------CCCCceEeeEEEe
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-------GDKGFYVQPTVFA 75 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-------~~~g~~i~Ptii~ 75 (87)
|++|.++|++.++++++|+|.++++++|||||+.+++++.++|+++++. +++++||... ...|+|++|||+.
T Consensus 305 ~d~f~~~l~~~~~~l~~G~p~~~~~~lGpli~~~~~~~i~~~i~~a~~~-A~vl~GG~~~~~~~~~~~~~g~~~~PTvl~ 383 (513)
T cd07128 305 VDAVIEALKARLAKVVVGDPRLEGVRMGPLVSREQREDVRAAVATLLAE-AEVVFGGPDRFEVVGADAEKGAFFPPTLLL 383 (513)
T ss_pred HHHHHHHHHHHHHhcccCCCccCCCCcCCCCCHHHHHHHHHHHHHHHhC-CEEEECCCccccccCCCCCCCEEECCEEEe
Confidence 6889999999999999999999999999999999999999999999987 9999998642 1258999999999
Q ss_pred eCCC--CCcchhcC
Q psy5845 76 NVRD--DMKIAREE 87 (87)
Q Consensus 76 ~v~~--~~~i~~eE 87 (87)
++++ ++.++++|
T Consensus 384 ~v~~~~~~~i~~eE 397 (513)
T cd07128 384 CDDPDAATAVHDVE 397 (513)
T ss_pred ccCCcccchHHhCC
Confidence 8886 48899987
No 81
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=99.68 E-value=2.9e-16 Score=109.25 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=76.6
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+|||+++.+++++.+++++++++|+++++||.. .|+|++|||+.+++++++
T Consensus 276 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~---~g~~~~Ptvl~~~~~~~~ 352 (452)
T cd07147 276 YDEFKSRLVARVKALKTGDPKDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGKR---DGALLEPTILEDVPPDME 352 (452)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCc---CCEEEcCEEEeCCCCCCh
Confidence 57899999999999999999998999999999999999999999999999999999864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 353 ~~~~E 357 (452)
T cd07147 353 VNCEE 357 (452)
T ss_pred HHhCc
Confidence 99988
No 82
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.67 E-value=4.4e-16 Score=109.62 Aligned_cols=83 Identities=28% Similarity=0.385 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.++++.+||||++.+++++.+++++++++| ++++||... ..+.|++|||+.+++++++
T Consensus 315 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~G-~i~~gg~~~-~~~~~~~Ptvl~~v~~~~~ 392 (494)
T PRK09847 315 ADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKG-QLLLDGRNA-GLAAAIGPTIFVDVDPNAS 392 (494)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCC-eEEECCccC-CCCceEeeEEEeCCCCCCh
Confidence 57889999999999999999999999999999999999999999999999 999988654 3578999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 393 ~~~eE 397 (494)
T PRK09847 393 LSREE 397 (494)
T ss_pred HHhCc
Confidence 99998
No 83
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=99.67 E-value=4.3e-16 Score=108.54 Aligned_cols=84 Identities=29% Similarity=0.485 Sum_probs=75.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.+ ++++||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.++++
T Consensus 273 ~~~f~~~l~~~~~~~~~G~p~~-~~~~gpli~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~ 351 (454)
T cd07109 273 YDEVLERLVERFRALRVGPGLE-DPDLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPP 351 (454)
T ss_pred HHHHHHHHHHHHHhCCCCCCcc-cCcCCCccCHHHHHHHHHHHHHHHhCCCEEEeCCCcCcccCCCCcEECcEEEecCCC
Confidence 5889999999999999999875 68999999999999999999999999999999886432 2589999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++.++++|
T Consensus 352 ~~~~~~eE 359 (454)
T cd07109 352 DSRLAQEE 359 (454)
T ss_pred CChhhhCC
Confidence 99999998
No 84
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=99.67 E-value=4.2e-16 Score=108.23 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=73.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|. .++++|||+|+.+++++.+++++++. |+++++||..+ ..|+|+.|||+.+++++++
T Consensus 255 ~d~f~~~l~~~~~~~~~g~p~-~~~~~gpli~~~~~~~v~~~i~~a~~-ga~~l~gg~~~-~~g~~~~Ptvl~~~~~~~~ 331 (432)
T cd07137 255 APTLIDALKNTLEKFFGENPK-ESKDLSRIVNSHHFQRLSRLLDDPSV-ADKIVHGGERD-EKNLYIEPTILLDPPLDSS 331 (432)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-ccCCcCCcCCHHHHHHHHHHHHHHHh-CCeEEeCCCcC-CCCCEEeeEEEecCCCcch
Confidence 478889999999999999984 58899999999999999999999998 89999998653 3689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 332 ~~~eE 336 (432)
T cd07137 332 IMTEE 336 (432)
T ss_pred hhhcc
Confidence 99998
No 85
>PLN02203 aldehyde dehydrogenase
Probab=99.67 E-value=4.5e-16 Score=109.43 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=73.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+. +.|||+||++|++++.++++++++. +++++||..+ ..|+|++|||+.+++++|.
T Consensus 265 ~d~f~~~L~~~~~~~~~G~p~~~-~~~Gpli~~~~~~~v~~~i~~a~~~-~~~~~gg~~~-~~g~~i~PTvl~~v~~d~~ 341 (484)
T PLN02203 265 APILIELLKSTIKKFFGENPRES-KSMARILNKKHFQRLSNLLKDPRVA-ASIVHGGSID-EKKLFIEPTILLNPPLDSD 341 (484)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcC-CCcCCCCCHHHHHHHHHHHHHHHhC-CeEEeCCCcC-CCCCEEeeEEEecCCCCCH
Confidence 57888999999999999999875 6899999999999999999999876 7888888653 4689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+++||
T Consensus 342 i~~eE 346 (484)
T PLN02203 342 IMTEE 346 (484)
T ss_pred HHhcC
Confidence 99998
No 86
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=99.67 E-value=5e-16 Score=109.75 Aligned_cols=83 Identities=33% Similarity=0.549 Sum_probs=75.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+++ ++||+|++.+++++.++++++.+. +++++||..+...|+|++|||+.+++++++
T Consensus 333 ~d~f~~~l~~~~~~l~~g~p~~~~-~~Gpli~~~~~~~v~~~v~~a~~~-~~vl~Gg~~~~~~g~~~~Ptvl~~v~~~~~ 410 (514)
T PRK03137 333 YDEVLEKVVELTKELTVGNPEDNA-YMGPVINQASFDKIMSYIEIGKEE-GRLVLGGEGDDSKGYFIQPTIFADVDPKAR 410 (514)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcc-CcCCCCCHHHHHHHHHHHHHHHhC-CEEEeCCCcCCCCceEEeeEEEeCCCCCCH
Confidence 588999999999999999999887 999999999999999999999887 699999875434689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 411 ~~~eE 415 (514)
T PRK03137 411 IMQEE 415 (514)
T ss_pred HHhCC
Confidence 99988
No 87
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=99.67 E-value=5.9e-16 Score=107.49 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++.++.|+| .+.++++||++++.+++++.+++++++++|+++++||..+ ..++|+.|||+.++++++
T Consensus 253 ~d~f~~~L~~~~~~~~~~~~~~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~~-~~g~~~~Ptvl~~~~~~~ 331 (433)
T cd07134 253 KDAFVEHLKAEIEKFYGKDAARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFD-AAQRYIAPTVLTNVTPDM 331 (433)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcCCCCccCCcCCHHHHHHHHHHHHHHHhCCCEEEeCCCcC-CCCCEEeeEEEeCCCCcc
Confidence 57889999999999877776 6778899999999999999999999999999999998764 458999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 332 ~~~~eE 337 (433)
T cd07134 332 KIMQEE 337 (433)
T ss_pred HHHhcc
Confidence 999988
No 88
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=99.66 E-value=5.9e-16 Score=107.04 Aligned_cols=82 Identities=30% Similarity=0.454 Sum_probs=76.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||.. .|+|++|||+.+++++++
T Consensus 255 ~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~i~~~i~~a~~~G~~~~~gg~~---~g~~~~Ptvl~~~~~~~~ 331 (431)
T cd07104 255 YDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTY---EGLFYQPTVLSDVTPDMP 331 (431)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCccCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCC---CCceECCEEeecCCCCCh
Confidence 57889999999999999999988899999999999999999999999999999998864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 332 ~~~eE 336 (431)
T cd07104 332 IFREE 336 (431)
T ss_pred hhhCc
Confidence 99988
No 89
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=99.66 E-value=9.3e-16 Score=106.76 Aligned_cols=85 Identities=31% Similarity=0.556 Sum_probs=77.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
+++|.++|++.++++++|+|.++++++||+++..+++++.+++++++++|+++++||.... ..++|++|||+.+++
T Consensus 273 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~~~~~~~Ptvl~~~~ 352 (455)
T cd07093 273 YDEFLERFVERAKALKVGDPLDPDTEVGPLISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLD 352 (455)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEecCC
Confidence 4789999999999999999999999999999999999999999999999999999986542 248899999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
++++++++|
T Consensus 353 ~~~~~~~~E 361 (455)
T cd07093 353 NDSRVAQEE 361 (455)
T ss_pred CCChHHhCC
Confidence 999999987
No 90
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=99.66 E-value=1e-15 Score=107.08 Aligned_cols=83 Identities=27% Similarity=0.335 Sum_probs=77.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|.+.++++++|+|.++++.+||+|+..+++++.++++++..+|+++++||... .|+|+.|||+.+++++++
T Consensus 295 ~d~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~~~~a~~~ga~~~~gg~~~--~g~~~~Ptvl~~~~~~~~ 372 (473)
T cd07082 295 ADELVELLKEEVAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGRE--GGNLIYPTLLDPVTPDMR 372 (473)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccC--CCeEEeeEEEecCCCCCH
Confidence 578899999999999999999888999999999999999999999999999999998764 489999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 373 ~~~eE 377 (473)
T cd07082 373 LAWEE 377 (473)
T ss_pred HHhCc
Confidence 99987
No 91
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=99.65 E-value=9.8e-16 Score=107.58 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=74.7
Q ss_pred hhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~ 81 (87)
+++|.++|++.++++++|+| .+.++++|||++.++++++.+++++++++|+++++||...+..++|++|||+ +++.++
T Consensus 289 ~d~f~~~l~~~~~~~~~g~~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~i~PTvl-~v~~~~ 367 (484)
T TIGR03240 289 GDAFLARLVEVAERLTVGAWDAEPQPFMGAVISLQAAQRLLAAQAKLLALGGKSLLAMRQLDPGAALLTPGII-DVTGVA 367 (484)
T ss_pred HHHHHHHHHHHHHhcccCCCCcCCCCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCEEEcCEEE-ccCCCC
Confidence 48899999999999999996 4677899999999999999999999999999999987643345789999999 689999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 368 ~i~~eE 373 (484)
T TIGR03240 368 ELPDEE 373 (484)
T ss_pred HHHhCC
Confidence 999998
No 92
>KOG2454|consensus
Probab=99.65 E-value=1.7e-16 Score=108.21 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~ 78 (87)
|+++..+|...++.++.|.+.....+||+|+++.+|+.+.+++++|+++||++++||.+.. +.|.|++||++.|++
T Consensus 347 Yd~~i~~l~~rv~s~r~G~~~~~~vDMGAm~s~nrfdhLesLv~DAv~KGArl~~gGsrF~Hpkyp~g~YF~PTlLvdvt 426 (583)
T KOG2454|consen 347 YDAFIGQLTKRVKSVRAGPPLTGRVDMGAMCSQNRFDHLESLVNDAVDKGARLAVGGSRFGHPKYPVGQYFPPTLLVDVT 426 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCccchhhhhhccchHHHHHHHHHHHhhcchhhhcccccCCCCCCcccccCCeEEEecC
Confidence 6888999999999999998888899999999999999999999999999999999987432 578999999999999
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
.+|.|+|||
T Consensus 427 ~eMKIaqeE 435 (583)
T KOG2454|consen 427 HEMKIAQEE 435 (583)
T ss_pred chhhhHhhh
Confidence 999999998
No 93
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.65 E-value=1.3e-15 Score=105.94 Aligned_cols=82 Identities=30% Similarity=0.418 Sum_probs=76.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++.+++|+|.++++.+|||+++.+++++.++++++..+|+++++||.. .++|+.|||+.++++++.
T Consensus 277 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpl~~~~~~~~~~~~i~~a~~~ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~ 353 (453)
T cd07149 277 YDEFLERFVAATKKLVVGDPLDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKR---DGAILEPTVLTDVPPDMK 353 (453)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCC---CCeEEcCEEEeCCCCCCH
Confidence 57899999999999999999998999999999999999999999999999999998864 478999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 354 ~~~~E 358 (453)
T cd07149 354 VVCEE 358 (453)
T ss_pred HHhCC
Confidence 99987
No 94
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=1.2e-15 Score=107.41 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+ ++++||++++.+++++.+++++++++|+++++||. ..|+|+.|||+.+++++++
T Consensus 311 ~d~f~~~l~~~~~~~~~g~p~~-~~~~gp~i~~~~~~~v~~~i~~a~~~Ga~~l~~~~---~~g~~~~Ptvl~~v~~~~~ 386 (496)
T PLN00412 311 ADALVEKVNAKVAKLTVGPPED-DCDITPVVSESSANFIEGLVMDAKEKGATFCQEWK---REGNLIWPLLLDNVRPDMR 386 (496)
T ss_pred HHHHHHHHHHHHHhCccCCCcc-cCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEecCC---CCCeEEecEEEeCCCCCCH
Confidence 5788899999999999999876 78999999999999999999999999999998764 2589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 387 i~~eE 391 (496)
T PLN00412 387 IAWEE 391 (496)
T ss_pred HHhCc
Confidence 99998
No 95
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=99.64 E-value=2.3e-15 Score=104.57 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=73.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|++|.++|++.++++++|+ ..++++||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++++
T Consensus 254 ~~~f~~~l~~~~~~~~~g~--~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~ 331 (434)
T cd07133 254 LEEFVAAAKAAVAKMYPTL--ADNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDD 331 (434)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCcCCCCCcEEeeEEEeCCCCC
Confidence 5789999999999998885 3577899999999999999999999999999999886532 35899999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 332 ~~i~~eE 338 (434)
T cd07133 332 MRVMQEE 338 (434)
T ss_pred Ccccccc
Confidence 9999998
No 96
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=99.63 E-value=1.6e-15 Score=105.51 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+| ++++.+||+|++.+++++.++++++ |+++++||... ..|+|++|||+.++++++.
T Consensus 261 ~d~f~~~l~~~~~~~~~g~p-~~~~~~gpli~~~~~~~i~~~v~~a---g~~v~~gg~~~-~~g~~~~Ptvl~~~~~~~~ 335 (436)
T cd07135 261 YDEFVEELKKVLDEFYPGGA-NASPDYTRIVNPRHFNRLKSLLDTT---KGKVVIGGEMD-EATRFIPPTIVSDVSWDDS 335 (436)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCCCcCCCCCHHHHHHHHHHHHhc---CCeEEECCCcC-CCCCEEccEEEecCCCccH
Confidence 57899999999999999999 8889999999999999999999876 78999998764 3689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 336 ~~~~E 340 (436)
T cd07135 336 LMSEE 340 (436)
T ss_pred HHhcc
Confidence 99988
No 97
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=99.63 E-value=2.6e-15 Score=106.38 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=72.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc------CCCCceEeeEEEee
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA------GDKGFYVQPTVFAN 76 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~------~~~g~~i~Ptii~~ 76 (87)
|++|.++|++.++++++|+|.++++++|||||+.+++++.++|+.+ .+|+++++||... ...|+|++|||+.+
T Consensus 309 ~d~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~~-~~ga~vl~gg~~~~~~~~~~~~g~~~~PTvl~~ 387 (521)
T PRK11903 309 YDAVAEALAARLAKTTVGNPRNDGVRMGPLVSRAQLAAVRAGLAAL-RAQAEVLFDGGGFALVDADPAVAACVGPTLLGA 387 (521)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCcCccCCCCCHHHHHHHHHHHHHH-hcCCEEEECCccCCCCCCCCCCCeEEcCEEEec
Confidence 6889999999999999999999999999999999999999999864 5799999998642 12489999999986
Q ss_pred CCC--CCcchhcC
Q psy5845 77 VRD--DMKIAREE 87 (87)
Q Consensus 77 v~~--~~~i~~eE 87 (87)
++. ++.++++|
T Consensus 388 ~~~~~~~~i~~eE 400 (521)
T PRK11903 388 SDPDAATAVHDVE 400 (521)
T ss_pred cCCCccchHHhCc
Confidence 554 46888887
No 98
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=99.60 E-value=6.2e-15 Score=104.33 Aligned_cols=82 Identities=20% Similarity=0.108 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.++++++|+|.+.++.|||++++.+++++.++++++.. ++++++||..+...|+|+.|||+.++ ++.
T Consensus 326 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~-~~~vl~gg~~~~~~g~~~~Ptvl~~v--~~~ 402 (518)
T cd07125 326 AERFIEMLKGAMASLKVGDPWDLSTDVGPLIDKPAGKLLRAHTELMRG-EAWLIAPAPLDDGNGYFVAPGIIEIV--GIF 402 (518)
T ss_pred HHHHHHHHHHHHhcCCccCCCCCCCCcCCCcCHHHHHHHHHHHHHHHh-CCEEEeCCCcCCCCCeEEccEEEeec--CCh
Confidence 578999999999999999999999999999999999999999999987 57888888654226899999999988 899
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 403 i~~eE 407 (518)
T cd07125 403 DLTTE 407 (518)
T ss_pred HhhCc
Confidence 99988
No 99
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=99.60 E-value=9.3e-15 Score=100.92 Aligned_cols=85 Identities=36% Similarity=0.550 Sum_probs=77.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC-CCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~-~g~~i~Ptii~~v~~~~ 81 (87)
+++|.++|++.++++++|+|.+.++++||+++..+++++.++++++.++|+++++||..+.. .|+|++|||+.++++++
T Consensus 252 ~~~~~~~L~~~l~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~gg~~~~~~~g~~~~Ptv~~~~~~~~ 331 (432)
T cd07078 252 YDEFVERLVERVKALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTVLTDVDPDM 331 (432)
T ss_pred HHHHHHHHHHHHHccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCcEEccEEEecCCCCC
Confidence 47899999999999999999999999999999999999999999999999999998876422 48999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
+++++|
T Consensus 332 ~~~~~E 337 (432)
T cd07078 332 PIAQEE 337 (432)
T ss_pred hhhhCC
Confidence 999987
No 100
>KOG2455|consensus
Probab=99.59 E-value=4.8e-15 Score=102.15 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRD 79 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~~ 79 (87)
.|+.+.+.|.+..+++++|+| .+..+++|++|+.+.|+|+..+|+.|+.. -..|++||.+++..|+|+.|||+..-++
T Consensus 357 ~wp~i~e~l~~~~~q~~igd~~~d~~~f~gavIh~~sF~rl~k~le~ak~~~~leiL~GGk~DdS~G~FV~PTiv~~kdP 436 (561)
T KOG2455|consen 357 LWPQIREELVEEHSQLKIGDPVIDFSTFIGAVIHDKSFARLKKVLEHAKKDPELEILAGGKCDDSTGYFVEPTIVLSKDP 436 (561)
T ss_pred hcHHHHHHHHHHHhhcccCCccccccchhhhhccHHHHHHHHHHHHhhccCccceeeecCcccCCCCeeecceEEEccCC
Confidence 489999999999999999997 67789999999999999999999999753 3678999999888999999999999999
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
.+++|.||
T Consensus 437 ~~pim~ee 444 (561)
T KOG2455|consen 437 KDPIMTEE 444 (561)
T ss_pred Ccchhhhh
Confidence 99999987
No 101
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=99.59 E-value=1.2e-14 Score=100.84 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=72.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|++|.++|++.++++++| ++++||++++.+++++.+++++++++|+++++||..+. ..++|+.|||+.++++++
T Consensus 257 ~~~f~~~l~~~~~~~~~g-----~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~~~gg~~~~~~~~~~~~Ptvl~~~~~~~ 331 (432)
T cd07105 257 ADEFVEKLKAAAEKLFAG-----PVVLGSLVSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDM 331 (432)
T ss_pred HHHHHHHHHHHHHhhcCC-----CCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCeEEeeEEEecCCCCC
Confidence 578899999999999887 46899999999999999999999999999999987542 358999999999999999
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 332 ~~~~eE 337 (432)
T cd07105 332 DIYSEE 337 (432)
T ss_pred HHHhCC
Confidence 999998
No 102
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=101.66 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.+++++ |++.+.++++|||||.+|++|+.++++ ++|+++++||..+ ..++|++|||+.+++++++
T Consensus 262 ~d~f~~~l~~~~~~~~-g~~~~~~~~~gpli~~~~~~ri~~~i~---~~ga~~~~gG~~~-~~~~~i~Ptvl~~v~~~~~ 336 (493)
T PTZ00381 262 KDKFIEALKEAIKEFF-GEDPKKSEDYSRIVNEFHTKRLAELIK---DHGGKVVYGGEVD-IENKYVAPTIIVNPDLDSP 336 (493)
T ss_pred HHHHHHHHHHHHHHHh-CCCCccCCCcCCCCCHHHHHHHHHHHH---hCCCcEEECCCcC-CCCCeEeeEEEecCCCCCh
Confidence 5788889999999985 666677889999999999999999996 3689999998764 4688999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+|+||
T Consensus 337 i~~eE 341 (493)
T PTZ00381 337 LMQEE 341 (493)
T ss_pred HHhcc
Confidence 99998
No 103
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=99.56 E-value=2.6e-14 Score=100.90 Aligned_cols=83 Identities=24% Similarity=0.196 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc---ccCCCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG---RAGDKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~---~~~~~g~~i~Ptii~~v~~ 79 (87)
|++|.++|++.++++++|+|.+.+++|||++++.+++++.++++++++.|++++.++. .....|+|++|||+.+ .
T Consensus 319 ~d~f~~~L~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~l~~~~~~~~~~~~~g~f~~PTvl~~--~ 396 (500)
T TIGR01238 319 ADRVLTMIQGAMQELKVGVPHLLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPTLFEL--D 396 (500)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCeeEcCEEEcc--C
Confidence 5789999999999999999999999999999999999999999999999998874322 1113589999999974 5
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++.++++|
T Consensus 397 ~~~~~~eE 404 (500)
T TIGR01238 397 DIAELSEE 404 (500)
T ss_pred CchHhhCC
Confidence 78889887
No 104
>KOG2452|consensus
Probab=99.56 E-value=1.2e-14 Score=101.58 Aligned_cols=84 Identities=31% Similarity=0.476 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcc
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i 83 (87)
++|-.++++.++++++|+|++.+++-||....+|+.++..|++.+.+.||++++||......|+|++|||++|+.+++-+
T Consensus 700 d~fv~~~vee~~~~~ig~pldr~t~hgpqnh~ahl~kl~ey~~~~v~~ga~~~~gg~~~~r~g~~f~pti~s~i~d~~f~ 779 (881)
T KOG2452|consen 700 DEFVRRVVEEVRKMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQHGVKEGATLVCGGNQVPRPGFFFEPTVFTDVEDHMFI 779 (881)
T ss_pred HHHHHHHHHHHHhhccCCcccccccCCchhHHHHHHHHHHHHHHHhccCcEEEECCccCCCCCcccCCeeecccchhhhh
Confidence 67888999999999999999999999999999999999999999999999999999887678999999999999999988
Q ss_pred hhcC
Q psy5845 84 AREE 87 (87)
Q Consensus 84 ~~eE 87 (87)
.+||
T Consensus 780 a~ee 783 (881)
T KOG2452|consen 780 AKEE 783 (881)
T ss_pred hhcc
Confidence 8886
No 105
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=99.55 E-value=2.1e-14 Score=100.25 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=69.5
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.+++++.|+|.+ ++++||+||+.+++++.+++++ +++++||..+ ..|+|+.|||+.++++++.
T Consensus 253 ~d~f~~~L~~~~~~~~~g~p~~-~~~~gpli~~~~~~~i~~~i~~-----a~~~~gG~~~-~~g~~~~Ptvl~~v~~~~~ 325 (449)
T cd07136 253 KEKFIKELKEEIKKFYGEDPLE-SPDYGRIINEKHFDRLAGLLDN-----GKIVFGGNTD-RETLYIEPTILDNVTWDDP 325 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC-CCCccCcCCHHHHHHHHHHHhc-----ceEEECCCcC-CCCCEEeeEEEecCCCcCh
Confidence 5789999999999999898886 7899999999999999999975 3788998754 3689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 326 ~~~eE 330 (449)
T cd07136 326 VMQEE 330 (449)
T ss_pred HHhcc
Confidence 99998
No 106
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.52 E-value=7.1e-14 Score=105.14 Aligned_cols=82 Identities=24% Similarity=0.185 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD 80 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~ 80 (87)
|+.|.++|+++++++++|+|.+.++++||+|++.+++++.++|+++++ |+++++||..++ ..|+|+.|||+.. .+
T Consensus 843 ~d~fl~~L~~~~~~l~vGdp~d~~t~~GPvI~~~a~~~l~~~I~~a~~-ga~vl~gg~~~~~~~~G~fv~PTvi~~--~~ 919 (1038)
T PRK11904 843 ADRVIEMLKGAMAELKVGDPRLLSTDVGPVIDAEAKANLDAHIERMKR-EARLLAQLPLPAGTENGHFVAPTAFEI--DS 919 (1038)
T ss_pred HHHHHHHHHHHHHhccCCCcccccCCccCCCCHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCCceEEeeEEEcc--CC
Confidence 688999999999999999999999999999999999999999999876 899999987542 2589999999963 46
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+.++++|
T Consensus 920 ~~~~~eE 926 (1038)
T PRK11904 920 ISQLERE 926 (1038)
T ss_pred cHHhCCC
Confidence 7788887
No 107
>KOG2453|consensus
Probab=99.52 E-value=7.2e-14 Score=94.17 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|+.+.++|+.+.+.+++|+|++.++.+|||-++++..+...-++.+++.|+++++||+..+.+|+|+.|||++ +..|++
T Consensus 312 yd~vlerlkkayaq~~ignpld~ntl~gplht~qav~~f~~~veeak~~ggki~yggkv~er~gnfveptivt-l~hda~ 390 (507)
T KOG2453|consen 312 YDQVLERLKKAYAQFEIGNPLDSNTLIGPLHTQQAVGKFKASVEEAKASGGKIEYGGKVLERDGNFVEPTIVT-LKHDAP 390 (507)
T ss_pred HHHHHHHHHHHHHheecCCcCCCCceeccccCHHHHHHHHHHHHHHHhcCCeEEECCEeeccCCCcccceEEE-ecCCcc
Confidence 5889999999999999999999999999999999999999999999999999999999776789999999997 888888
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
+..+|
T Consensus 391 vv~~e 395 (507)
T KOG2453|consen 391 VVLRE 395 (507)
T ss_pred hhhhh
Confidence 87765
No 108
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.49 E-value=1.7e-13 Score=104.65 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD 79 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~ 79 (87)
|+.|.+.|+++++++++|+|.+.++++||+|++.+++++.++|++++++|++++.|+.... ..|+|++||||.. .
T Consensus 930 ad~fl~~L~~a~~~l~vGdP~~~~tdvGPvId~~a~~~i~~~I~~a~~~G~~v~~g~~~~~~~~~~G~fv~PTIi~~--~ 1007 (1318)
T PRK11809 930 ADRTLKMLRGAMAECRMGNPDRLSTDIGPVIDAEAKANIERHIQAMRAKGRPVFQAARENSEDWQSGTFVPPTLIEL--D 1007 (1318)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCCCCCeEEeeEEEec--c
Confidence 5788899999999999999999999999999999999999999999999999988764321 3589999999974 4
Q ss_pred CCcchhcC
Q psy5845 80 DMKIAREE 87 (87)
Q Consensus 80 ~~~i~~eE 87 (87)
++.++++|
T Consensus 1008 ~~~~l~eE 1015 (1318)
T PRK11809 1008 SFDELKRE 1015 (1318)
T ss_pred chhhhcCc
Confidence 56778777
No 109
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=99.49 E-value=2.1e-13 Score=95.04 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=67.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
+++|.++|++.+++++.|++ +.++++||++++++++++.++++ ++++++||..+ ..++|++|||+.+++++++
T Consensus 253 ~d~f~~~l~~~~~~~~~g~~-~~~~~~gpli~~~~~~~v~~~i~-----~a~~~~gg~~~-~~~~~~~Ptvl~~v~~~~~ 325 (443)
T cd07132 253 QEKFVEALKKTLKEFYGEDP-KESPDYGRIINDRHFQRLKKLLS-----GGKVAIGGQTD-EKERYIAPTVLTDVKPSDP 325 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CcccccCCcCCHHHHHHHHHHHh-----CCEEEeCCccC-CCCCEEeeEEEeCCCCCCh
Confidence 47788889888989887877 67889999999999999999987 35888988754 3689999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 326 ~~~eE 330 (443)
T cd07132 326 VMQEE 330 (443)
T ss_pred HHhcc
Confidence 99998
No 110
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.46 E-value=3.2e-13 Score=102.79 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM 81 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~ 81 (87)
|+.|.++|+++++++++|+|.+.++++||+|++.+++++.++|++++++|+.++.|+.... ..|+|+.|||+. + +++
T Consensus 835 ~d~f~e~L~~~~~~l~vGdP~d~~t~~GPvId~~a~~~i~~~I~~a~~~G~~l~~g~~~~~~~~G~fv~PTVl~-~-~~~ 912 (1208)
T PRK11905 835 ADRVLTMLKGAMDELRIGDPWRLSTDVGPVIDAEAQANIEAHIEAMRAAGRLVHQLPLPAETEKGTFVAPTLIE-I-DSI 912 (1208)
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCccCccCHHHHHHHHHHHHHHHHCCCEEEEccCCCCCCCCeEEeeEEEe-c-CCh
Confidence 6889999999999999999999999999999999999999999999999998877653221 368999999997 3 467
Q ss_pred cchhcC
Q psy5845 82 KIAREE 87 (87)
Q Consensus 82 ~i~~eE 87 (87)
.++++|
T Consensus 913 ~~~~eE 918 (1208)
T PRK11905 913 SDLERE 918 (1208)
T ss_pred HHhcCC
Confidence 788887
No 111
>KOG2456|consensus
Probab=99.46 E-value=4.6e-14 Score=96.53 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=63.3
Q ss_pred HHHHHHH----HhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCC
Q psy5845 5 SAAVFTK----DLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD 80 (87)
Q Consensus 5 ~~~~~l~----~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~ 80 (87)
+++.+|. ..++++ +|+....+.+++++||+.||+|+.++++.- .+++.||..+ ...+||+|||+.||+++
T Consensus 255 ~~~~kli~alk~~l~eF-YG~n~~eS~d~sRiIn~~hf~Rl~~ll~~~----~kv~~Gg~~d-~~d~~I~PTIL~DV~~~ 328 (477)
T KOG2456|consen 255 SIQPKLIDALKSTLKEF-YGENPKESKDLSRIINQRHFQRLSALLDET----GKVAIGGESD-ESDRYIAPTILLDVPED 328 (477)
T ss_pred hhhHHHHHHHHHHHHHH-hCCCccccccHHHHhhHHHHHHHHHHhcCC----CceecCCccc-hhhcccCCeEEecCCCC
Confidence 4455554 445566 576667789999999999999999998732 6899999876 56789999999999999
Q ss_pred CcchhcC
Q psy5845 81 MKIAREE 87 (87)
Q Consensus 81 ~~i~~eE 87 (87)
+++|+||
T Consensus 329 ~p~M~eE 335 (477)
T KOG2456|consen 329 SPVMQEE 335 (477)
T ss_pred Chhhhhh
Confidence 9999998
No 112
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=99.43 E-value=9e-13 Score=94.04 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=65.7
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCC-ceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKG-FYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g-~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++ +|+|.+..+++|||||+.+++|+.+ +++.|+ +++||..+. ..| +|+.|||+.+++
T Consensus 361 ~d~f~~~L~~~~~~l-~Gdp~~~~~~~Gpli~~~~~~ri~~----a~~~g~-vl~gg~~~~~~~~~g~~~~~Ptvl~~~~ 434 (549)
T cd07127 361 FDEVAADLAAAIDGL-LADPARAAALLGAIQSPDTLARIAE----ARQLGE-VLLASEAVAHPEFPDARVRTPLLLKLDA 434 (549)
T ss_pred HHHHHHHHHHHHHHh-cCCccccccccCCcCCHHHHHHHHH----HHhCCC-EEEcCCcCCCcCCCCceEEeCEEEEeCC
Confidence 899999999999999 8999888899999999999999865 445565 777775431 134 567999999888
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 435 ~d~~i~~eE 443 (549)
T cd07127 435 SDEAAYAEE 443 (549)
T ss_pred CCCHHHcCC
Confidence 899999998
No 113
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=99.40 E-value=1.4e-12 Score=90.52 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~ 82 (87)
|++|.++|++.+++++.|+| ++++.+||++++.+++++.++++++ ++++||..+ ..|+|+.|||+.+++++++
T Consensus 253 ~d~f~~~L~~~~~~l~~~~~-~~~~~~gpli~~~~~~~~~~~i~~a-----~v~~gg~~~-~~g~~~~Ptvl~~~~~~~~ 325 (426)
T cd07087 253 KDELIEELKKAIKEFYGEDP-KESPDYGRIINERHFDRLASLLDDG-----KVVIGGQVD-KEERYIAPTILDDVSPDSP 325 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCC-ccCCCcCCCCCHHHHHHHHHHHhcc-----eEEeCCccC-CCCCEEeeEEEecCCCCCH
Confidence 57889999999999975555 4688999999999999999999754 788888654 3589999999999999999
Q ss_pred chhcC
Q psy5845 83 IAREE 87 (87)
Q Consensus 83 i~~eE 87 (87)
++++|
T Consensus 326 ~~~eE 330 (426)
T cd07087 326 LMQEE 330 (426)
T ss_pred HHhcc
Confidence 99987
No 114
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=99.37 E-value=2.8e-12 Score=91.54 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=63.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc---CCCC-ceEeeEEEeeCC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA---GDKG-FYVQPTVFANVR 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~---~~~g-~~i~Ptii~~v~ 78 (87)
|++|.++|++.++++ +|+|.+.++++|||||+.+++|+ +++.+.| ++++||... ...| +|++|||+....
T Consensus 361 ~def~~~L~~~~~~l-vGdp~~~~~~~Gplis~~~~~ri----~~a~~~G-~v~~gG~~~~~~~~~g~~~~~Ptvl~~~~ 434 (551)
T TIGR02288 361 YDEVAADLATAIDGL-LGDPARATAVLGAIQSPDTLARI----AEARALG-EVLLASTKIEHPEFPGARVRTPLLLKCDA 434 (551)
T ss_pred HHHHHHHHHHHHHHh-cCCcccccccccCcCCHHHHHHH----HHHHhCC-CEEEcCccCCCCCCCCCEEeccEEEEcCC
Confidence 799999999999999 89998888999999999999996 5566678 566666432 1134 689999995333
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
.+|.+++||
T Consensus 435 ~d~~i~~eE 443 (551)
T TIGR02288 435 ADEAAYMQE 443 (551)
T ss_pred CCCHHHhCC
Confidence 489999998
No 115
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=99.36 E-value=5.1e-12 Score=89.22 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=65.5
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccCC----CC-ceEeeEEEee-
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGGGRAGD----KG-FYVQPTVFAN- 76 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~~----~g-~~i~Ptii~~- 76 (87)
++|.++|++.++++++|+ +++||+||.. .+++.++++++++ +|+++++||..+.. .+ .|++|||+.+
T Consensus 297 d~f~~~l~~~~~~~~~g~-----~~~Gpli~~~-~~~v~~~i~~a~~~~Ga~~l~GG~~~~~~~~~~~~~~~~PTvl~~~ 370 (489)
T cd07126 297 AGILDKLKALAEQRKLED-----LTIGPVLTWT-TERILDHVDKLLAIPGAKVLFGGKPLTNHSIPSIYGAYEPTAVFVP 370 (489)
T ss_pred HHHHHHHHHHHHhcccCC-----CcCCCCcCHH-HHHHHHHHHHHHhCCCCEEEeCCcccccccccCCcceecCeEEEec
Confidence 789999999999998764 4799999998 9999999999997 89999999975422 23 3899999952
Q ss_pred -----CCCCCcchhcC
Q psy5845 77 -----VRDDMKIAREE 87 (87)
Q Consensus 77 -----v~~~~~i~~eE 87 (87)
++++|.+++||
T Consensus 371 ~~~~~~~~~~~i~~eE 386 (489)
T cd07126 371 LEEIAIEENFELVTTE 386 (489)
T ss_pred cccccCCCCCHHHhCC
Confidence 56799999998
No 116
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=99.18 E-value=7.6e-11 Score=82.34 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccC------CCCceEeeEEEe
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAG------DKGFYVQPTVFA 75 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~------~~g~~i~Ptii~ 75 (87)
+++|.++|++.++++++| ++.+||++++.. ..+++++.+. |+++++||.... ..|+|++|||+.
T Consensus 256 ~~~f~~~l~~~~~~~~~g-----~~~~gpl~~~~~----~~~i~~a~~~gga~~~~gg~~~~~~~~~~~~g~~~~Ptvl~ 326 (442)
T cd07084 256 KTPLVEKLKALLARRKLE-----DLLLGPVQTFTT----LAMIAHMENLLGSVLLFSGKELKNHSIPSIYGACVASALFV 326 (442)
T ss_pred HHHHHHHHHHHHHhcccC-----ccccChhhhHHH----HHHHHHHHhcCCcEEEeCCcccccCCCCCcCCcccCCeEEE
Confidence 478999999999999988 578999987654 4556666667 589999986421 248999999999
Q ss_pred eCCCCC---cchhcC
Q psy5845 76 NVRDDM---KIAREE 87 (87)
Q Consensus 76 ~v~~~~---~i~~eE 87 (87)
++++++ .++++|
T Consensus 327 ~~~~~~~~~~i~~eE 341 (442)
T cd07084 327 PIDEILKTYELVTEE 341 (442)
T ss_pred ecCcccccchHHhee
Confidence 999987 999987
No 117
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=99.12 E-value=3.5e-10 Score=79.25 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCC---
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVR--- 78 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~--- 78 (87)
|++|.++|++.++++++| |+++..+.+++.++++++.++ |+++++||... ..++|++|||+.+.+
T Consensus 273 ~d~f~~~l~~~~~~~~~g----------~~~~~~~~~~~~~~i~~a~~~~ga~~l~gg~~~-~~g~~~~Ptvl~~~~~~~ 341 (454)
T cd07129 273 GDAFIAALAEALAAAPAQ----------TMLTPGIAEAYRQGVEALAAAPGVRVLAGGAAA-EGGNQAAPTLFKVDAAAF 341 (454)
T ss_pred HHHHHHHHHHHHhccCCC----------CCcChHHHHHHHHHHHHHHhcCCcEEEeCCCcC-CCCCccCCEEEEccCCcc
Confidence 688999999999988754 555666667777778888888 99999999754 468999999998655
Q ss_pred CCCcchhcC
Q psy5845 79 DDMKIAREE 87 (87)
Q Consensus 79 ~~~~i~~eE 87 (87)
+++.++++|
T Consensus 342 ~~~~i~~~E 350 (454)
T cd07129 342 LADPALQEE 350 (454)
T ss_pred ccchhhccc
Confidence 689999988
No 118
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=98.68 E-value=2.7e-08 Score=69.72 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHCCCeEEeCCc-c-cCCCCceEeeE---EEeeCC--CCCcchhcC
Q psy5845 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGG-R-AGDKGFYVQPT---VFANVR--DDMKIAREE 87 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~-~-~~~~g~~i~Pt---ii~~v~--~~~~i~~eE 87 (87)
||+++..+++++.++++++.++|++++.|+. . ....|+|++|| ++.+++ .+|.+++||
T Consensus 263 gpli~~~~~~~v~~~i~~a~~~Ga~~~gg~~~~~~~~~G~~~~pt~~~i~~~~~~~~~~~i~~eE 327 (439)
T cd07081 263 AYKLTAEELQQVQPVILKNGDVNRDIVGQDAYKIAAAAGLKVPQETRILIGEVTSLAEHEPFAHE 327 (439)
T ss_pred CccCCHHHHHHHHHHHHhcCCcCCcccCCCHHHHHHHcCCccCCCceEEEEecCCCCCCchhhhC
Confidence 8999999999999999999999997754332 1 11258899998 999988 999999998
No 119
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=98.62 E-value=6.1e-08 Score=68.74 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=51.7
Q ss_pred hhHHHHHHHHh-------hccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 3 WTSAAVFTKDL-------DKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 3 ~~~~~~~l~~~-------~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
|++|.++|++. .+.+++|+| .++++.+||+++.++++++.++++.++.+|+++++||.
T Consensus 260 ~d~f~~~L~~~g~~~~~~~~~~~vg~~~~~~~~~~gp~i~~~~~~~i~~~i~~av~~gakll~gg~ 325 (488)
T TIGR02518 260 KDAVVEELKKQGGYFLTAEEAEKLGKFILRPNGTMNPQIVGKSPQVIANLAGLTVPEDAKVLIGEQ 325 (488)
T ss_pred HHHHHHHHHHhhhhhcCHHHHHhhcccccCCCCCcCcccccchHHHHHHHhccccCCCCEEEEeCC
Confidence 46788888887 888899996 56788999999999999999999999999999999885
No 120
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=98.41 E-value=2.6e-07 Score=64.62 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC--CCeEEeCCccc---CCCCceEe---eEEEe
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ--GAQLVAGGGRA---GDKGFYVQ---PTVFA 75 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~--Ga~i~~gg~~~---~~~g~~i~---Ptii~ 75 (87)
++++++|++.+... + ..+++.++++++.++++++.+. |++++.||... ...|+|++ |||+.
T Consensus 250 ~~i~d~f~~~L~~~--~---------~~~i~~~~~~~v~~~i~~a~~~~~ga~~~~gg~~~~~~~~~G~~~~~~~ptil~ 318 (429)
T cd07121 250 DSVADYLIAAMQRN--G---------AYVLNDEQAEQLLEVVLLTNKGATPNKKWVGKDASKILKAAGIEVPADIRLIIV 318 (429)
T ss_pred HHHHHHHHHHHHHC--C---------CEEcCHHHHHHHHHhhcccCCCccccccccCcCHHHHHHHcCCCCCCCCeEEEE
Confidence 34556666655443 1 1489999999999999998864 68999887531 12477877 59999
Q ss_pred eCCCCCcchhcC
Q psy5845 76 NVRDDMKIAREE 87 (87)
Q Consensus 76 ~v~~~~~i~~eE 87 (87)
+++++|+++++|
T Consensus 319 ~v~~~~~i~~eE 330 (429)
T cd07121 319 ETDKDHPFVVEE 330 (429)
T ss_pred ecCCCCCccccc
Confidence 999999999988
No 121
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=98.31 E-value=2.1e-06 Score=61.75 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEe
Q psy5845 8 VFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFA 75 (87)
Q Consensus 8 ~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~ 75 (87)
.-|+.++.++++|+|..-.++.||+|+..+...+.++|+..+..|-.+..-..... ..|.|++||+|.
T Consensus 400 ~mLKGAm~el~~G~p~~l~tDVGPVIdaEAk~~i~~Hi~~mr~~gr~v~q~~~~~~~q~GtFv~Ptl~E 468 (769)
T COG4230 400 TMLKGAMAELRVGNPDRLTTDVGPVIDAEAKANIEKHIQTMRSKGRLVHQAAAPNSLQKGTFVAPTLIE 468 (769)
T ss_pred HHHHHHHHHhccCCccceeccccccccHHHHHHHHHHHHHHHhcccchhhccCCCccCCceeeCceeEE
Confidence 33667778999999998899999999999999999999998887654432221111 369999999995
No 122
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=98.24 E-value=1.7e-06 Score=61.10 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc---cCCCCceE---eeEEEeeC
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR---AGDKGFYV---QPTVFANV 77 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~---~~~~g~~i---~Ptii~~v 77 (87)
++++++|.+.+.+. + ++++++.+++++.++++++.+++++++.|+.. ....|+++ +|||+.++
T Consensus 282 ~si~d~f~~~l~~~--~---------~~li~~~~~~~v~~~l~~~~~~~~~~~~g~~~~~i~~~~G~~~~~~~~tvl~~v 350 (465)
T PRK15398 282 DSVADELMRLMEKN--G---------AVLLTAEQAEKLQKVVLKNGGTVNKKWVGKDAAKILEAAGINVPKDTRLLIVET 350 (465)
T ss_pred HHHHHHHHHHHHHc--C---------CccCCHHHHHHHHHHHhhcccccchhhhCCCHHHHHHhCCCCCCCCCCEEEecC
Confidence 45666666666553 1 26999999999999998654456677776542 11235555 48999999
Q ss_pred CCCCcchhcC
Q psy5845 78 RDDMKIAREE 87 (87)
Q Consensus 78 ~~~~~i~~eE 87 (87)
++++++++||
T Consensus 351 ~~d~~i~~eE 360 (465)
T PRK15398 351 DANHPFVVTE 360 (465)
T ss_pred CCCCchhccc
Confidence 9999999998
No 123
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=97.85 E-value=6.8e-06 Score=57.76 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhhccc-------cccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 3 WTSAAVFTKDLDKTN-------YVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~-------~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
|++|.++|++....+ ++|++ .+.++.+||+++..+.+++..++..+..+|+++++++
T Consensus 251 ~d~f~~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~ga~vl~~~ 315 (436)
T cd07122 251 YDEVRAELKRRGAYFLNEEEKEKLEKALFDDGGTLNPDIVGKSAQKIAELAGIEVPEDTKVLVAE 315 (436)
T ss_pred HHHHHHHHHHhcceecCHHHHHHHHHHhhcCCCCcCccccCcCHHHHHHHcCCCCCCCCeEEEEe
Confidence 578888888888877 77876 3557789999999999998888887777888887765
No 124
>KOG2449|consensus
Probab=97.62 E-value=0.00011 Score=44.33 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHH-HCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhc
Q psy5845 8 VFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGK-SQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86 (87)
Q Consensus 8 ~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~-~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~e 86 (87)
..+++.++.+++-+...++++. .+...||..+++.-. ..|..+...|. ..++|+.|||+. |+++|.+++|
T Consensus 13 ~~lve~ak~l~v~~g~kp~tD~-----~a~~~ri~~liqS~~~~~~r~~yl~~y---a~~~f~~~tiLs-vtP~ms~yke 83 (157)
T KOG2449|consen 13 PTLVEDAKVLKVNAGEKPQTDK-----YAPKVRIDKLIQSEDPLDGRFIYLPGY---AEGNFVGPTILS-VTPNMSCYKE 83 (157)
T ss_pred HHHHHhhhheEeccCCCCCccc-----hhHHHHHHHHhcCcCccCCceEEeecc---ccCCcccceEEE-ecCCcceeHh
Confidence 6789999999988777777776 667788888887421 22333333332 468899999998 9999999988
Q ss_pred C
Q psy5845 87 E 87 (87)
Q Consensus 87 E 87 (87)
|
T Consensus 84 e 84 (157)
T KOG2449|consen 84 E 84 (157)
T ss_pred h
Confidence 6
No 125
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=97.52 E-value=8.1e-05 Score=56.15 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=50.0
Q ss_pred HHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeE-EeCCccc---CCCCceEeeEE------E
Q psy5845 5 SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQL-VAGGGRA---GDKGFYVQPTV------F 74 (87)
Q Consensus 5 ~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i-~~gg~~~---~~~g~~i~Pti------i 74 (87)
+++++|++.+.+. | +++++..|++|+.++++++...|++. +.||... ...|+|++||+ +
T Consensus 262 ~i~d~f~~~l~~~--g---------~~l~~~~~~~~v~~~i~~a~~~~~~~~~~g~~~~~~~~~~G~~~~p~~~~~i~~l 330 (862)
T PRK13805 262 EIYDEVKEEFASH--G---------AYFLNKKELKKLEKFIFGKENGALNADIVGQSAYKIAEMAGFKVPEDTKILIAEV 330 (862)
T ss_pred hhHHHHHHHHHHh--C---------CeeCCHHHHHHHHHHHhhccCCCcCccccCCCHHHHHHHcCCCCCCCCeEEEEec
Confidence 4555666555443 1 58999999999999999886555433 4455321 12478889987 7
Q ss_pred eeCCCCCcchhc
Q psy5845 75 ANVRDDMKIARE 86 (87)
Q Consensus 75 ~~v~~~~~i~~e 86 (87)
.++++++++++|
T Consensus 331 ~~v~~~~~~~~E 342 (862)
T PRK13805 331 KGVGESEPLSHE 342 (862)
T ss_pred CCCCCCCcchhc
Confidence 789999999885
No 126
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=87.24 E-value=0.66 Score=32.56 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHH-HHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845 32 KIDKEQMDKILEFIE-SGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 32 li~~~~~~rv~~~l~-~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE 87 (87)
++.+.-++++...+. ...+.|++++ +|... ..|++|| ++++|.++++|
T Consensus 258 ~V~~si~d~f~~~l~~~~~~~ga~~~-~g~~~---~~~~~pt----v~~d~~i~~eE 306 (406)
T cd07079 258 LVHRDIAEEFLPKLAEALREAGVELR-GDEET---LAILPGA----KPATEEDWGTE 306 (406)
T ss_pred EEeHHHHHHHHHHHHHHHHHCCCEEe-cCHHH---HHhcccc----cCCCcchhhhh
Confidence 567777888766554 4456788865 44321 1388888 78899999987
No 127
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=87.21 E-value=0.97 Score=34.19 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=31.7
Q ss_pred cCCHHHHH--HHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845 32 KIDKEQMD--KILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 32 li~~~~~~--rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE 87 (87)
++.+.-++ ++..++++|+++|+++ +||... .| ++. + ++|.+++||
T Consensus 551 lVh~~i~d~G~~~~~i~~a~~~Ga~l-~Gg~~~--~g------~l~-~-~~~~i~~eE 597 (718)
T PLN02418 551 LVHKDLVQNGGLNDLLVALRSAGVTL-YGGPRA--SK------LLN-I-PEAQSFHHE 597 (718)
T ss_pred EEeccccccccHHHHHHHHHHCCCEE-ECCccc--cC------eeC-C-CCchhhhCC
Confidence 34444444 4899999999999999 677543 23 233 3 679999988
No 128
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=74.03 E-value=3.9 Score=30.99 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=30.5
Q ss_pred cCCHHHHH--HHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845 32 KIDKEQMD--KILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 32 li~~~~~~--rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE 87 (87)
++.+.-++ .+.++++++.++|++++ ||... .+ |+. + .++++.+++||
T Consensus 543 lV~~~i~d~~~~~~~v~~~~~~Ga~l~-Gg~~~--~~-~~~---~--~~~~~~i~~eE 591 (715)
T TIGR01092 543 LVHKDLLRNGLLDDLIDMLRTEGVTIH-GGPRF--AA-YLT---F--NISETKSFRTE 591 (715)
T ss_pred EEehhhccchhHHHHHHHHHHCCCEEE-CCcch--hh-eec---c--CCCCchhhhcc
Confidence 33444444 37788888888999984 77543 22 432 1 25689999988
No 129
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=71.51 E-value=5.9 Score=21.13 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=22.8
Q ss_pred ccccCCHHHH-HHHHHHHHHHHHCCCeEEe
Q psy5845 29 WGRKIDKEQM-DKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 29 ~gpli~~~~~-~rv~~~l~~a~~~Ga~i~~ 57 (87)
+||..+++.. .....|++|..++|++.+.
T Consensus 25 FGPF~s~~eA~~~~~gyieDL~~Ega~~I~ 54 (68)
T PF08846_consen 25 FGPFDSREEAEAALPGYIEDLESEGAQGIS 54 (68)
T ss_pred eCCcCCHHHHHHHhccHHHHHHhhCcceEE
Confidence 7999987766 4556799999999987653
No 130
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=70.79 E-value=32 Score=24.64 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+.+.+++.--.+.+||.+.+++ +.--.+..|+..+ -.+.+.|.+.|.++..-|
T Consensus 205 ~fd~lleI~k~yDvtlSLGDglRPG~-i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEG 264 (432)
T COG0422 205 HFDELLEIFKEYDVTLSLGDGLRPGC-IADANDEAQFAELITLGELTKRAWEAGVQVMVEG 264 (432)
T ss_pred hHHHHHHHHHHhCeeeeccCCCCCCc-ccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 67888888888888888999876653 3445567787555 456778889999988744
No 131
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=65.11 E-value=8.1 Score=26.96 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845 32 KIDKEQMDKILEFIESGKS-QGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE 87 (87)
++.+.-++.+...+..... +|++++.||. ++|+.|| +++.++++|
T Consensus 249 ~V~~~i~d~~~~~l~~~~~~~G~~~~~g~~-----~~~~~pt------~~~~~~~~E 294 (397)
T cd07077 249 YVVDDVLDPLYEEFKLKLVVEGLKVPQETK-----PLSKETT------PSFDDEALE 294 (397)
T ss_pred EEehhhhHHHHHHHHHHHHhcCcCcCCCce-----eeEEecc------CCCChhhhh
Confidence 4556666555554444433 4888776652 3577775 466666665
No 132
>KOG2450|consensus
Probab=61.23 E-value=5 Score=29.31 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchh
Q psy5845 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85 (87)
Q Consensus 33 i~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~ 85 (87)
.+..+..+++..+.+..+++...+...... +.|.++.++...|++...++.+
T Consensus 79 ~~~~~R~~~L~~~Adlie~~~~~lA~~E~~-d~GKp~~~a~~~Dl~~~~~~~r 130 (501)
T KOG2450|consen 79 RDAAERGRLLRKLADLIEQDADVLAALEVL-DNGKPYPEALVSDLPPAIDCFR 130 (501)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHhhhccc-ccCCcchhhhhcCchhhhhHHH
Confidence 367788888888888888888887766654 4677888888778776665544
No 133
>PLN02444 HMP-P synthase
Probab=57.87 E-value=63 Score=24.46 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+.+.+++.--.+.+||.+.+++ +---.++.|+..+ -.+.+.|.++|.++..-|
T Consensus 362 ~FD~ileI~k~YDVtlSLGDGLRPG~-iaDA~D~AQ~~EL~tLGELtkrA~e~gVQVMIEG 421 (642)
T PLN02444 362 HWDDILDICNQYDIALSIGDGLRPGS-IYDANDTAQFAELLTQGELTRRAWEKDVQVMNEG 421 (642)
T ss_pred HHHHHHHHHHHhCeeeeccCCcCCCc-cccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 67888888888777888899876654 2334567777555 446677889999988744
No 134
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=54.90 E-value=76 Score=23.93 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+-+.+++.--.+.+||.+.+++ +---.+++|+..+ -.+.+.|.++|.++..-|
T Consensus 357 ~FD~ileI~k~YDVtlSLGDGLRPG~-iaDA~D~AQ~~EL~tLGELt~rA~e~gVQVMIEG 416 (607)
T PRK09284 357 HFEEICEIMAAYDVSFSLGDGLRPGS-IADANDEAQFAELETLGELTKIAWEHDVQVMIEG 416 (607)
T ss_pred HHHHHHHHHHHhCeeeeccCCcCCCc-cccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 56777777887777888899876653 2334567777555 446677889999988844
No 135
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=53.39 E-value=44 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.5
Q ss_pred CccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc
Q psy5845 28 IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA 62 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~ 62 (87)
.+.||++....++++..+.++..-.|=++.||.+.
T Consensus 32 ~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCA 66 (443)
T TIGR01358 32 SLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCA 66 (443)
T ss_pred cCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCcccc
Confidence 47899999999999999987754346666788764
No 136
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=53.07 E-value=38 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHHHHC
Q psy5845 32 KIDKEQMDKILEFIESGKSQ 51 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~~~ 51 (87)
.+|+.|+.++..+|+...+.
T Consensus 127 ~vs~~qy~~L~~~I~~sf~~ 146 (208)
T TIGR02117 127 LVSENQYNRLMDFISASFVR 146 (208)
T ss_pred EcCHHHHHHHHHHHHHhcCc
Confidence 68999999999999987543
No 137
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=52.31 E-value=28 Score=19.86 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHHHHHCCCe
Q psy5845 32 KIDKEQMDKILEFIESGKSQGAQ 54 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~~~Ga~ 54 (87)
-++..+++++.+-++.|..+|++
T Consensus 31 ~l~~~~~~~i~~av~~A~~KG~k 53 (96)
T TIGR02530 31 SINPDDWKKLLEAVEEAESKGVK 53 (96)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999975
No 138
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=50.59 E-value=54 Score=24.02 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=27.8
Q ss_pred CccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc
Q psy5845 28 IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA 62 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~ 62 (87)
.+.||++....++++..+.++..-.|=++.||.+.
T Consensus 51 ~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCA 85 (474)
T PLN02291 51 AFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCA 85 (474)
T ss_pred cCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchh
Confidence 47899999999999999988754446667788754
No 139
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=49.70 E-value=35 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=24.3
Q ss_pred CccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 28 IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
.-||.|++.+++.+...+.....+..-++..|.
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCC
Confidence 358899999998888888875556665666553
No 140
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=49.37 E-value=1e+02 Score=22.43 Aligned_cols=57 Identities=25% Similarity=0.440 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+.+.+++.--.+.+||.+.+++ +---.++.|+..+ -.+.+.|.+.|.++..-|
T Consensus 207 ~fD~lLeI~~~yDVtlSLGDglRPG~-i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEG 266 (431)
T PRK13352 207 HFDYLLEILKEYDVTLSLGDGLRPGC-IADATDRAQIQELITLGELVKRAREAGVQVMVEG 266 (431)
T ss_pred HHHHHHHHHHHhCeeeeccCCcCCCc-cccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 56777777777777788898876543 2233466777554 446678889999988744
No 141
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=48.39 E-value=1e+02 Score=22.30 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+.+.+++.--.+.+||.+.+++ +---.++.|+..+ -.+.+.|.+.|.++..-|
T Consensus 204 ~fD~lLeI~~~yDVtlSLGDglRPG~-i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEG 263 (423)
T TIGR00190 204 NFDYILEIAKEYDVTLSLGDGLRPGC-IADATDRAQISELITLGELVERAREADVQCMVEG 263 (423)
T ss_pred HHHHHHHHHHHhCeeeeccCCcCCCc-cccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 46777777777777788898776543 2233456666544 446678889999988744
No 142
>PRK04946 hypothetical protein; Provisional
Probab=46.70 E-value=44 Score=21.19 Aligned_cols=45 Identities=7% Similarity=-0.087 Sum_probs=30.9
Q ss_pred hccccccC-CCCCCCCccccCCHHHHHHHHHHHHHHHHCCCe---EEeC
Q psy5845 14 DKTNYVTQ-GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQ---LVAG 58 (87)
Q Consensus 14 ~~~~~~g~-~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~---i~~g 58 (87)
+++++.|. +.+..-++=-+..+.+.+.+..+|.+|...|-+ |+.|
T Consensus 84 ~k~Lr~G~~~~~~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHG 132 (181)
T PRK04946 84 LKKLRRGDYSPELFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHG 132 (181)
T ss_pred HHHhhCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34555554 233344566678889999999999999987754 4545
No 143
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=46.66 E-value=35 Score=16.41 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHCC
Q psy5845 36 EQMDKILEFIESGKSQG 52 (87)
Q Consensus 36 ~~~~rv~~~l~~a~~~G 52 (87)
.|...|.+||++|++.|
T Consensus 3 eQi~~I~~~I~qAk~~~ 19 (42)
T PF11464_consen 3 EQINIIESYIKQAKAAR 19 (42)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46678899999998754
No 144
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=45.84 E-value=20 Score=25.34 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHH-HHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845 32 KIDKEQMDKILEFI-ESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 32 li~~~~~~rv~~~l-~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE 87 (87)
++.+.-++.+...+ +.+.+.++.++ |+... .+ |+ |||+ +.++.++++|
T Consensus 264 ~V~~~i~d~f~~~l~~~~~~~~~~~~-~~~~~--~~-~~-PTi~---~~~~~i~~eE 312 (417)
T PRK00197 264 LVHEAIAEEFLPKLAEALAEAGVELR-GDEAA--LA-LL-PDVV---PATEEDWDTE 312 (417)
T ss_pred EEEHHHhHHHHHHHHHHHHHCCCeEe-cCHHH--HH-hh-cccc---cCCcchhhhh
Confidence 55666677766644 34455566665 33221 23 33 9998 3578899887
No 145
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=44.33 E-value=1.1e+02 Score=21.54 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=29.1
Q ss_pred CCh-hHHHHHHHHhhc---cccc--cCCCCCCCCccccCCHHHHHHHHHHHH
Q psy5845 1 MHW-TSAAVFTKDLDK---TNYV--TQGLRAGTIWGRKIDKEQMDKILEFIE 46 (87)
Q Consensus 1 ~~~-~~~~~~l~~~~~---~~~~--g~~~~~~~~~gpli~~~~~~rv~~~l~ 46 (87)
||| +..|.++.+... .+.+ |-+......+|.+..--..+-+..++.
T Consensus 1 ~~W~~~~A~~~~~~~~~~~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr 52 (353)
T cd00674 1 MHWADVIAEKIIEERKGKEKYVVASGISPSGHIHIGNFREVITADLVARALR 52 (353)
T ss_pred CCchHHHHHHHHHhccCCCeEEEecCCCCCCCcccCccHHHHHHHHHHHHHH
Confidence 899 667777776543 2333 333344567888877777777766665
No 146
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=40.54 E-value=75 Score=22.94 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHH---HHHHHHHHHCCCeEEeCC
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKI---LEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv---~~~l~~a~~~Ga~i~~gg 59 (87)
||+.+.+.+++.--.+.+||.+.+++- ---.++.|+..+ ..+.++|.+.|.++..-|
T Consensus 203 ~fD~lLeI~k~yDVtLSLGDglRPG~i-~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVEG 262 (420)
T PF01964_consen 203 HFDRLLEIAKEYDVTLSLGDGLRPGCI-ADATDRAQIQELIILGELVKRAREAGVQVMVEG 262 (420)
T ss_dssp THHHHHHHHTTTT-EEEE--TT--SSG-GGTT-HHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred hHHHHHHHHHHhCeeEecccccCCCCc-CCCCcHHHHHHHHHHHHHHHHHHHCCCeEEeeC
Confidence 456666666666667788988766542 234467777554 456778889999888743
No 147
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=39.57 E-value=54 Score=21.11 Aligned_cols=25 Identities=44% Similarity=0.512 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+...+++.+++++|.++|+.+++=.
T Consensus 15 ~~N~~~~~~~i~~A~~~gadlvvfP 39 (261)
T cd07570 15 EGNAEKILEAIREAKAQGADLVVFP 39 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 6778999999999999999998643
No 148
>KOG0079|consensus
Probab=38.15 E-value=86 Score=19.75 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC---CeEEeCCccc
Q psy5845 5 SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG---AQLVAGGGRA 62 (87)
Q Consensus 5 ~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G---a~i~~gg~~~ 62 (87)
+..++|...+..++-|.. .-...=-+.|...|..+..|++++.... .+++.|.+.+
T Consensus 65 AGqErFrtitstyyrgth--gv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d 123 (198)
T KOG0079|consen 65 AGQERFRTITSTYYRGTH--GVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKND 123 (198)
T ss_pred ccHHHHHHHHHHHccCCc--eEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCC
Confidence 456778888888765421 1111224779999999999999987654 2445555544
No 149
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=38.08 E-value=58 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+...+++..+++.|.+.|+.+++=.
T Consensus 17 ~~n~~~i~~~i~~A~~~gadlivfP 41 (280)
T cd07574 17 EEFAAKVEYWVAEAAGYGADLLVFP 41 (280)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEECc
Confidence 5567899999999999999988643
No 150
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=37.79 E-value=1e+02 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHHHHC---CCeEEe
Q psy5845 32 KIDKEQMDKILEFIESGKSQ---GAQLVA 57 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~~~---Ga~i~~ 57 (87)
.+|+.+++++..+|+...+. |..+..
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i 125 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPI 125 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEe
Confidence 68999999999999987643 444444
No 151
>KOG0805|consensus
Probab=35.90 E-value=69 Score=21.82 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
..+-++++..++.++..+|++++.
T Consensus 32 tpaTL~K~~~~~~Eaa~~Ga~LV~ 55 (337)
T KOG0805|consen 32 TPATLDKAEKYIVEAASKGAELVL 55 (337)
T ss_pred CHHHHHHHHHHHHHHhcCCceEEE
Confidence 466789999999999999999985
No 152
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=35.30 E-value=62 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=25.2
Q ss_pred CccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc
Q psy5845 28 IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA 62 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~ 62 (87)
.+.||++....++++..+.++..-.+-++.||.+.
T Consensus 33 ~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCA 67 (439)
T PF01474_consen 33 SLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCA 67 (439)
T ss_dssp TS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcc
Confidence 47899999999999999998754446677788754
No 153
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=35.05 E-value=71 Score=20.74 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++..++++|.++|+.+++=.+
T Consensus 15 ~~Nl~~~~~~i~~A~~~gadlivfPE 40 (279)
T TIGR03381 15 ETNIARAERLVREAAARGAQIILLPE 40 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEccc
Confidence 56779999999999999998886443
No 154
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=34.95 E-value=69 Score=21.34 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+..++++.++++.|.++|+.+++-.+
T Consensus 21 ~~n~~~i~~~i~~A~~~gadlivfPE 46 (302)
T cd07569 21 ESVVARLIALLEEAASRGAQLVVFPE 46 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEccc
Confidence 55679999999999999999987444
No 155
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=34.86 E-value=1.3e+02 Score=21.36 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
|..-...+++...-.++.+. -.|.==.+..+.+++..+|+++.+.| ++.+|=..
T Consensus 282 ~~~Y~~~~~~nsDfrK~Dd~----Lrmvid~t~~~~~~l~~~L~~~~~~G-~~~YGlH~ 335 (373)
T PF11294_consen 282 PKRYRREVVENSDFRKFDDG----LRMVIDCTPEQRDALEARLEQAEAAG-KLRYGLHR 335 (373)
T ss_pred HHHHHHHHHhhcchhhcCCc----eeEEEeCCHHHHHHHHHHHHHHHHCC-ceEEeeec
Confidence 33344455555555555433 24544568999999999999998875 57777543
No 156
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.67 E-value=72 Score=20.51 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
-...++++..++++|.++|+.+++=++
T Consensus 14 ~~~n~~~i~~~i~~a~~~gadliv~PE 40 (261)
T cd07585 14 KARNLAVIARWTRKAAAQGAELVCFPE 40 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 356679999999999999998886443
No 157
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=34.52 E-value=1.3e+02 Score=22.12 Aligned_cols=47 Identities=13% Similarity=0.033 Sum_probs=28.8
Q ss_pred CCh-hHHHHHHHHhhcc---c--cccCCCCCCCCccccCCHHHHHHHHHHHHH
Q psy5845 1 MHW-TSAAVFTKDLDKT---N--YVTQGLRAGTIWGRKIDKEQMDKILEFIES 47 (87)
Q Consensus 1 ~~~-~~~~~~l~~~~~~---~--~~g~~~~~~~~~gpli~~~~~~rv~~~l~~ 47 (87)
||| +..|.++.+.... + ..|-+.+....+|.+..--..+-+..++..
T Consensus 5 ~~W~~~~A~~~~~r~~~~~~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~ 57 (510)
T PRK00750 5 KHWADEEAEKIIKRLGKKPPVVVETGIGPSGLPHIGNFREVARTDMVRRALRD 57 (510)
T ss_pred ccChHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccccccchhhHHHHHHHHHH
Confidence 799 6677777765443 2 223333445678888766666666666654
No 158
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=34.51 E-value=72 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++..++++|.++|+.+++-.+
T Consensus 15 ~~n~~~i~~~i~~a~~~ga~lvv~PE 40 (254)
T cd07576 15 AANLARLDEAAARAAAAGADLLVFPE 40 (254)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEccC
Confidence 45678999999999999999886443
No 159
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=33.76 E-value=70 Score=16.14 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHCCCeEE
Q psy5845 38 MDKILEFIESGKSQGAQLV 56 (87)
Q Consensus 38 ~~rv~~~l~~a~~~Ga~i~ 56 (87)
|+++...++.-.+.|++|+
T Consensus 33 y~~ls~~~q~I~r~GGkIv 51 (56)
T PF01383_consen 33 YSQLSQEMQRINRQGGKIV 51 (56)
T ss_dssp HHHHHHHHHHHHHCT-EEE
T ss_pred HHHhHHHHHHHHHCCCEEE
Confidence 4677777777778899886
No 160
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=33.33 E-value=72 Score=19.17 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAG 58 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~g 58 (87)
...++++..++++|.++|+.++.=
T Consensus 17 ~~n~~~i~~~~~~a~~~~~dlvv~ 40 (186)
T PF00795_consen 17 EENLKKILSLIEEAARQGADLVVF 40 (186)
T ss_dssp HHHHHHHHHHHHHHHHTTESEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEc
Confidence 456789999999999989988763
No 161
>PLN02747 N-carbamolyputrescine amidase
Probab=32.88 E-value=82 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++..+++.|...|+.+++=++
T Consensus 21 ~~N~~~i~~~i~~A~~~gadlvvfPE 46 (296)
T PLN02747 21 AANVDKAERLVREAHAKGANIILIQE 46 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEccc
Confidence 56779999999999999999987443
No 162
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.71 E-value=78 Score=20.44 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+..++++.+++++|.++|+.+++=.
T Consensus 15 ~~n~~~~~~~i~~A~~~ga~liv~P 39 (269)
T cd07586 15 EENLEKHLEIIETARERGADLVVFP 39 (269)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEec
Confidence 5677999999999999999888643
No 163
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.48 E-value=83 Score=20.11 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
...++++.+++++|.++|+.+++=+
T Consensus 13 ~~n~~~~~~~i~~a~~~g~dlivfP 37 (255)
T cd07581 13 EENLEKVRRLLAEAAAAGADLVVFP 37 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEECc
Confidence 5677999999999999999988643
No 164
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.01 E-value=82 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAG 58 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~g 58 (87)
+..++++.+++++|.++|+.+++=
T Consensus 16 ~~n~~~~~~~i~~A~~~gadlivf 39 (258)
T cd07578 16 ERNIERLLALCEEAARAGARLIVT 39 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEc
Confidence 567799999999999999988863
No 165
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=31.72 E-value=87 Score=20.11 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++.++++.|.++|+.+++=++
T Consensus 14 ~~n~~~~~~~i~~A~~~g~dlivfPE 39 (265)
T cd07572 14 EANLARAKELIEEAAAQGAKLVVLPE 39 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCc
Confidence 67779999999999999999886433
No 166
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=31.58 E-value=88 Score=19.73 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
.+...+++..+++.|.+.|+.+++=.
T Consensus 13 ~~~n~~~~~~~i~~a~~~g~dlvvfP 38 (253)
T cd07197 13 VEANLAKALRLIKEAAEQGADLIVLP 38 (253)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcC
Confidence 35677999999999999999888643
No 167
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=31.38 E-value=87 Score=20.74 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
+..++++.++++.|.++|+.+++
T Consensus 14 ~~Nl~~~~~~i~~A~~~gadlvv 36 (279)
T cd07579 14 AGNLATIDRLAAEAKATGAELVV 36 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEE
Confidence 56779999999999888998875
No 168
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=31.27 E-value=1.2e+02 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 33 IDKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 33 i~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
.+..|.++++++++.+.+.|-++.+
T Consensus 179 ~~~~q~~~l~~~v~~a~~~Gl~vr~ 203 (228)
T cd08577 179 TPEDEKEKLKSIIDKAHARGKKVRF 203 (228)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5677999999999999998877765
No 169
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=31.18 E-value=83 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+..++++..+++.|.+.|+.+++=..
T Consensus 86 ~~nl~ki~~~i~~Aa~~gadLivfPE 111 (363)
T cd07587 86 EAIHDRIKKIIEAAAMAGVNIICFQE 111 (363)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEccc
Confidence 56779999999999999999886433
No 170
>PTZ00293 thymidine kinase; Provisional
Probab=31.15 E-value=56 Score=21.23 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred ccCCHHHH-HHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 31 RKIDKEQM-DKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 31 pli~~~~~-~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
=+|++.|| ..+..+++.+...|-.+++.|-.
T Consensus 81 I~IDEaQFf~~i~~~~~~l~~~g~~VivaGLd 112 (211)
T PTZ00293 81 IAIDEGQFFPDLVEFSEAAANLGKIVIVAALD 112 (211)
T ss_pred EEEEchHhhHhHHHHHHHHHHCCCeEEEEecC
Confidence 36778887 56777777777788888776643
No 171
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=30.94 E-value=53 Score=17.83 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=16.2
Q ss_pred CccccCCHHHHHHHHHHHH
Q psy5845 28 IWGRKIDKEQMDKILEFIE 46 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~ 46 (87)
..-++|+...|+++...++
T Consensus 82 ~~~~IIs~~~f~~vq~~l~ 100 (102)
T PF07508_consen 82 YHPPIISEEEFERVQKKLD 100 (102)
T ss_pred CCCCccCHHHHHHHHHHHh
Confidence 4569999999999988775
No 172
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=30.87 E-value=99 Score=20.25 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 26 ~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
++..+.-++-.+..++..+|+.++++|+.|+..|-
T Consensus 42 d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGY 76 (243)
T PF10096_consen 42 DPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGY 76 (243)
T ss_pred CCCCcccccchhhHHHHHHHHHHHhcCCEEEEEec
Confidence 33444434455556666777777789999988764
No 173
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=30.34 E-value=92 Score=20.27 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
...++++.+++.+|.+.|++++.-.+.
T Consensus 18 ~~N~~~~~~~i~~a~~~ga~LvvfPEl 44 (274)
T COG0388 18 AENLARILRLIREAAARGADLVVFPEL 44 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEECCcc
Confidence 677899999999999999999875543
No 174
>KOG0086|consensus
Probab=30.01 E-value=93 Score=19.69 Aligned_cols=45 Identities=4% Similarity=0.156 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS 50 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~ 50 (87)
.+..++|....++++-|... ....=-+.|+..|+.+..|+.+++.
T Consensus 65 TAGQErFRSVtRsYYRGAAG--AlLVYD~TsrdsfnaLtnWL~DaR~ 109 (214)
T KOG0086|consen 65 TAGQERFRSVTRSYYRGAAG--ALLVYDITSRDSFNALTNWLTDART 109 (214)
T ss_pred cccHHHHHHHHHHHhccccc--eEEEEeccchhhHHHHHHHHHHHHh
Confidence 35567888888887766421 1223347799999999999999874
No 175
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=28.75 E-value=57 Score=21.82 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHhhccccccCCCCCCCCccc--------------------cCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGR--------------------KIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gp--------------------li~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
.|.+..+++..+++++...|...+++ +++ --+...|.+..+-+...++.|+.++..|-.
T Consensus 123 ~~~e~e~~lR~~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 123 KWEEKEEKLRRAVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp GHHHHHHHHHHHEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhhhHHHHHHHhhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 37778889999988765444322221 111 126777888877777788889988876643
No 176
>PLN02798 nitrilase
Probab=28.74 E-value=1e+02 Score=20.32 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++..+++.|.+.|+.+++=++
T Consensus 25 ~~N~~~~~~~i~~A~~~gadlvvfPE 50 (286)
T PLN02798 25 AANFATCSRLAKEAAAAGAKLLFLPE 50 (286)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEcCC
Confidence 66779999999999999998886433
No 177
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=28.34 E-value=1.2e+02 Score=17.87 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 31 RKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 31 pli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
.+++....+++.++++ .|+.++.|..
T Consensus 63 ~~~~~~~~~~l~~~v~----~GG~li~~~~ 88 (154)
T cd03143 63 YLLSDATAAALRAYVE----NGGTLVAGPR 88 (154)
T ss_pred hcCCHHHHHHHHHHHH----CCCEEEEecC
Confidence 3566777777777765 6888888754
No 178
>PRK01217 hypothetical protein; Provisional
Probab=28.20 E-value=47 Score=19.45 Aligned_cols=48 Identities=10% Similarity=-0.021 Sum_probs=34.5
Q ss_pred HHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 10 TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 10 l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+.+.++.+. |. ....|..++++...+-+.++.++|.+.||.-+.|=..
T Consensus 42 ~~a~lr~~~-GG---e~~~Y~~~l~~aR~eA~~rm~~~A~~lGAnAVVgvrf 89 (114)
T PRK01217 42 IVAGLRSLA-GG---EIKEYVEMAEQARNQALERMIDHAKELGANAVINVRF 89 (114)
T ss_pred HHHHHHHhh-Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 444555553 32 1235778888888888999999999999998887543
No 179
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=28.16 E-value=1.6e+02 Score=19.47 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=23.6
Q ss_pred cccCCHHHHHHHHHHHHHHHH-------CCCeEEeCCcc
Q psy5845 30 GRKIDKEQMDKILEFIESGKS-------QGAQLVAGGGR 61 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~-------~Ga~i~~gg~~ 61 (87)
|...+..+.+.+...+.+... ..-+|++||..
T Consensus 170 G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV 208 (242)
T cd00311 170 GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSV 208 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCC
Confidence 556788888888888877654 24689999864
No 180
>PLN02504 nitrilase
Probab=27.99 E-value=1.1e+02 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+..++++..++..|.+.|+.+++=.
T Consensus 40 ~~nl~~~~~li~eAa~~gadLIVfP 64 (346)
T PLN02504 40 PATLDKAERLIAEAAAYGSQLVVFP 64 (346)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeC
Confidence 5677999999999999999988643
No 181
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=27.98 E-value=1.1e+02 Score=20.02 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
++.++++..++++|.++|+.+++=.
T Consensus 26 ~~nl~~~~~~i~~A~~~gadlvvfP 50 (287)
T cd07568 26 EAMIQKHVTMIREAAEAGAQIVCLQ 50 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEcc
Confidence 4667899999999999999888643
No 182
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.86 E-value=75 Score=19.51 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 39 DKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 39 ~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+.+...+.++++.|..++.||..
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH
T ss_pred HHHHHHHHHHHHcCCcEEECCHH
Confidence 55677788899999999999853
No 183
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=27.84 E-value=1.1e+02 Score=19.62 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
+..++++..++++|.+.|+.+++
T Consensus 15 ~~n~~~~~~~i~~a~~~ga~liv 37 (258)
T cd07584 15 KANLKKAAELCKEAAAEGADLIC 37 (258)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 66789999999999989998886
No 184
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=27.52 E-value=1.1e+02 Score=19.49 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+..++++.++++.|.+.|+.+++=.
T Consensus 15 ~~n~~~i~~~i~~A~~~g~dlvv~P 39 (253)
T cd07583 15 EANIERVESLIEEAAAAGADLIVLP 39 (253)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEcC
Confidence 4677999999999999999988643
No 185
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=27.48 E-value=1.7e+02 Score=19.96 Aligned_cols=16 Identities=56% Similarity=0.752 Sum_probs=12.2
Q ss_pred EEEeeCCCCCcchhcC
Q psy5845 72 TVFANVRDDMKIAREE 87 (87)
Q Consensus 72 tii~~v~~~~~i~~eE 87 (87)
||+.+++++++++++|
T Consensus 257 tl~~~~~~~~~~~~~E 272 (367)
T cd06534 257 TVLVDVDPDMPIAQEE 272 (367)
T ss_pred eeeeCCCCCCccccCC
Confidence 7777777778887776
No 186
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=27.46 E-value=1.1e+02 Score=20.31 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAG 58 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~g 58 (87)
+..++++..+++.|.++|+.+++=
T Consensus 16 ~~nl~~~~~~i~~A~~~ga~lvvf 39 (297)
T cd07564 16 AATVEKACRLIEEAAANGAQLVVF 39 (297)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEe
Confidence 567799999999999999988763
No 187
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=26.71 E-value=1.1e+02 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+..++++..++++|.+.|+.+++=.
T Consensus 23 ~~Nl~~i~~~i~~A~~~gadLIVfP 47 (299)
T cd07567 23 EKNLDIYEEIIKSAAKQGADIIVFP 47 (299)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 5678999999999999999888633
No 188
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=26.51 E-value=1.1e+02 Score=16.27 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 30 GRKIDKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
=|..++.+.+.+...|..|...+..+..
T Consensus 20 kp~Lde~~leei~~~l~~a~~~~~~v~i 47 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQENQPVTI 47 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3778999999999999999877765543
No 189
>PRK14566 triosephosphate isomerase; Provisional
Probab=25.94 E-value=1.6e+02 Score=19.77 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=24.0
Q ss_pred cccCCHHHHHHHHHHHHHHHH-------CCCeEEeCCcc
Q psy5845 30 GRKIDKEQMDKILEFIESGKS-------QGAQLVAGGGR 61 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~-------~Ga~i~~gg~~ 61 (87)
|...+..+.+++..+|.+... ...+|++||..
T Consensus 183 G~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV 221 (260)
T PRK14566 183 GKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSV 221 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCC
Confidence 566788999999888887542 24589999964
No 190
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=25.48 E-value=1.3e+02 Score=16.72 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhhccccccCCCCCCCCc-----cccCCHHHHHHHHHHHHHHHHC
Q psy5845 3 WTSAAVFTKDLDKTNYVTQGLRAGTIW-----GRKIDKEQMDKILEFIESGKSQ 51 (87)
Q Consensus 3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~-----gpli~~~~~~rv~~~l~~a~~~ 51 (87)
|+....++.+-+..+.-|.+...+..+ +-=|+..+|+++...+..+.++
T Consensus 38 ~~~~~~~~~~fl~~~~gg~~~y~g~~~~~~H~~~~I~~~~f~~~l~~l~~al~~ 91 (116)
T cd00454 38 LEEHRAKLADFLTQVLGGPGLYRGHPMLRRHLPFPITEEEFDAWLELLRDALDE 91 (116)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCChhhhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 556666666666655323222222122 3358889999998888887754
No 191
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=25.08 E-value=1.4e+02 Score=19.50 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
+...+++.+++++|.+.|+.+++=++
T Consensus 15 ~~n~~~~~~~i~~A~~~gadlivfPE 40 (284)
T cd07573 15 EANLAKAEELVREAAAQGAQIVCLQE 40 (284)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEccc
Confidence 47889999999999999998876443
No 192
>PRK02877 hypothetical protein; Provisional
Probab=24.86 E-value=60 Score=18.73 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 27 ~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
..|..++++..-+-+.++.++|.+.||.-+.|=.
T Consensus 48 ~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVIgvr 81 (106)
T PRK02877 48 GAYEKELRKAREIAFEELGEQARALGADAVVGID 81 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3577888988889999999999999998887744
No 193
>PRK14567 triosephosphate isomerase; Provisional
Probab=24.69 E-value=2e+02 Score=19.28 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHHHHHHHH-------CCCeEEeCCcc
Q psy5845 30 GRKIDKEQMDKILEFIESGKS-------QGAQLVAGGGR 61 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~-------~Ga~i~~gg~~ 61 (87)
|...+..+.+++..+|.+... ...+|++||..
T Consensus 173 G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV 211 (253)
T PRK14567 173 GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL 211 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC
Confidence 567788999888888876442 35689999864
No 194
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=24.57 E-value=1.2e+02 Score=17.92 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCe
Q psy5845 33 IDKEQMDKILEFIESGKSQGAQ 54 (87)
Q Consensus 33 i~~~~~~rv~~~l~~a~~~Ga~ 54 (87)
+|..-+++|..+++.-+++||+
T Consensus 1 vs~~v~e~I~~iVe~RrqEGA~ 22 (118)
T PRK13713 1 ISNEVYEKINAIVEERRQEGAR 22 (118)
T ss_pred CchHHHHHHHHHHHHHHHcCCC
Confidence 3566788999999988888884
No 195
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=24.54 E-value=2e+02 Score=19.07 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=24.2
Q ss_pred cccCCHHHHHHHHHHHHHHHH-------CCCeEEeCCcc
Q psy5845 30 GRKIDKEQMDKILEFIESGKS-------QGAQLVAGGGR 61 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~-------~Ga~i~~gg~~ 61 (87)
|...+..+.+.+..+|..... ..-+|++||..
T Consensus 174 G~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV 212 (250)
T PRK00042 174 GKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSV 212 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCC
Confidence 566789999999888887654 23589999864
No 196
>PLN02561 triosephosphate isomerase
Probab=24.34 E-value=1.7e+02 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHHHHHHHH--------CCCeEEeCCcc
Q psy5845 30 GRKIDKEQMDKILEFIESGKS--------QGAQLVAGGGR 61 (87)
Q Consensus 30 gpli~~~~~~rv~~~l~~a~~--------~Ga~i~~gg~~ 61 (87)
|...+..+.+.+...+.+... ...+|++||..
T Consensus 174 G~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV 213 (253)
T PLN02561 174 GKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSV 213 (253)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCc
Confidence 667789999999888876332 34689999864
No 197
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.24 E-value=1.5e+02 Score=16.91 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHHHH-HCCCeEEe-CCcccCCCCceE
Q psy5845 32 KIDKEQMDKILEFIESGK-SQGAQLVA-GGGRAGDKGFYV 69 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~-~~Ga~i~~-gg~~~~~~g~~i 69 (87)
+.+..++..-...+..+. ..|++.+. ||....-+|.+.
T Consensus 12 v~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ 51 (96)
T COG5470 12 VRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWR 51 (96)
T ss_pred ecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCC
Confidence 345566655555555554 45898887 454433345443
No 198
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=24.21 E-value=2.9e+02 Score=20.56 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=25.3
Q ss_pred CCh-hHHHHHHHHhhc--cccc--cCCCCCCCCccccCCHHHHHHHHHHHH
Q psy5845 1 MHW-TSAAVFTKDLDK--TNYV--TQGLRAGTIWGRKIDKEQMDKILEFIE 46 (87)
Q Consensus 1 ~~~-~~~~~~l~~~~~--~~~~--g~~~~~~~~~gpli~~~~~~rv~~~l~ 46 (87)
||| +..|.+|.+... .+.+ |-+......+|.+..--..+-+..++.
T Consensus 1 ~hW~~~~A~~l~~r~~~~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r 51 (515)
T TIGR00467 1 MHWADVIAEKLKKEKPKNLYTVASGITPSGHIHIGNFREVITADAIARALR 51 (515)
T ss_pred CCCcHHHHHHHHhhccCCeEEEecCCCCCCCccccchhhhhHHHHHHHHHH
Confidence 899 667777776421 2222 322333456777766555555555554
No 199
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.05 E-value=1.3e+02 Score=17.28 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 39 DKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 39 ~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
..+++++.++.+.|+.+++.|-.
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~ 33 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFP 33 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCC
Confidence 45677788888889999886643
No 200
>KOG3181|consensus
Probab=24.03 E-value=67 Score=20.92 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=24.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 29 ~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+|-+.-+++..-+..++-.+.++|+.++..|+.
T Consensus 110 lgGlavRRA~ygvlr~vmesgAkGceviVSGKL 142 (244)
T KOG3181|consen 110 LGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHccCCccEEEEeccc
Confidence 345555566666777888888999999988764
No 201
>KOG2303|consensus
Probab=23.95 E-value=93 Score=23.43 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+..++||.+-|+.|++.||++..|...
T Consensus 20 egN~~rI~~Si~eAk~~gA~~RlGPEL 46 (706)
T KOG2303|consen 20 EGNMQRILKSIEEAKARGARYRLGPEL 46 (706)
T ss_pred cccHHHHHHHHHHHHhcCCeeecCCce
Confidence 445689999999999999999988753
No 202
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=23.84 E-value=1.6e+02 Score=21.81 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
..+...+++.++.+.-++|++-.-..|-..|..+++.++=||.-. .|.+|..
T Consensus 81 ~~v~~AaVqtvNal~~~~p~df~is~GD~~nn~~~nElrWyidvl--dG~~I~p 132 (492)
T TIGR03768 81 TQVLDAAVQTVNDLHKRDRFDFGISLGDACNSTQYNELRWYIDVL--DGKPITP 132 (492)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEeccccccchhHHHHHHHHHHh--cCCeecc
Confidence 356778888888887888888777789999999999999998732 4777765
No 203
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=23.63 E-value=93 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
+...+|+.++++.|.++|+.+++
T Consensus 22 ~~nl~~~~~~i~~a~~~ga~lvv 44 (270)
T cd07571 22 QATLDRYLDLTRELADEKPDLVV 44 (270)
T ss_pred HHHHHHHHHHHhhcccCCCCEEE
Confidence 56778888999888888888875
No 204
>KOG1367|consensus
Probab=23.32 E-value=1.6e+02 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHCCCeEEeC
Q psy5845 31 RKIDKEQMDKILEFIESGKSQGAQLVAG 58 (87)
Q Consensus 31 pli~~~~~~rv~~~l~~a~~~Ga~i~~g 58 (87)
++.++...+.+.+++..|+++|-+|++.
T Consensus 254 Sl~de~g~e~v~~l~~kak~~~v~i~lP 281 (416)
T KOG1367|consen 254 SLFDEEGAEIVKDLMEKAKAKGVRILLP 281 (416)
T ss_pred hhhhhhhHHHHHHHHHHHHHcCcEEEee
Confidence 4677888899999999999999999865
No 205
>PRK00967 hypothetical protein; Provisional
Probab=22.85 E-value=68 Score=18.39 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=34.0
Q ss_pred HHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 10 TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 10 l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+...++.+. |. ....+..++++..-+-+..+.++|.+.||.-+.|=..
T Consensus 35 ~~a~~r~~~-GG---e~~~y~~~l~~aR~eA~~rm~~~A~~~GAnAIIgvr~ 82 (105)
T PRK00967 35 IGAGLKNVV-GG---EIKGYTEMLTEARDIAIDRMKEEAKQKGANAIVGMRF 82 (105)
T ss_pred HHHHHhHhc-CC---chHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 344555553 42 1235777888888888899999999999988877543
No 206
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.84 E-value=1.3e+02 Score=17.69 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
...+.++....+.++..+|.++.+.|
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~G 42 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVCG 42 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 45667888888889999999988743
No 207
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=22.80 E-value=1.6e+02 Score=17.77 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEE
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLV 56 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~ 56 (87)
+....+.+..+++.|++.|++++
T Consensus 78 s~~s~eevd~~v~ka~eaGGk~~ 100 (133)
T COG3607 78 SAGSREEVDELVDKALEAGGKPA 100 (133)
T ss_pred ccCcHHHHHHHHHHHHHcCCCCC
Confidence 45566778888999999898874
No 208
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=22.41 E-value=89 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=13.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845 31 RKIDKEQMDKILEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 31 pli~~~~~~rv~~~l~~a~~~Ga~i~~gg~ 60 (87)
.+++.+..+++.++++ .|+++++++.
T Consensus 67 ~~l~~~~~~~L~~yV~----~GG~li~~~~ 92 (207)
T PF08532_consen 67 YILSPEFAERLRAYVE----NGGTLILTPR 92 (207)
T ss_dssp SC--HHH---HHHHHT-----SS-EEE-TT
T ss_pred EEEChHHHHHHHHHHH----CCCEEEEEcc
Confidence 3678888888888875 6899988754
No 209
>PF15595 Imm31: Immunity protein 31
Probab=22.19 E-value=1.7e+02 Score=16.79 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHhhc-cc--cccCCCCCCCCccccCCHHHHHHHHHHHHHHHH
Q psy5845 2 HWTSAAVFTKDLDK-TN--YVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS 50 (87)
Q Consensus 2 ~~~~~~~~l~~~~~-~~--~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~ 50 (87)
-|++++..+...-. .+ +++-.++.+.....--+...+.++..++..+..
T Consensus 41 ~W~~l~~~~l~~~~p~l~~~i~fDpEagmF~ays~~~eal~~l~~~i~~~~e 92 (107)
T PF15595_consen 41 DWEALARVYLRENAPELLEKIDFDPEAGMFCAYSEDKEALKKLAEIIKEACE 92 (107)
T ss_pred cHHHHHHHHHHHhChhHHHhcCcCCCCCEEEEecCCHHHHHHHHHHHHHHHC
Confidence 48988888775553 22 233233445444545678888888888876643
No 210
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.07 E-value=41 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=15.2
Q ss_pred CceEeeEEEeeCCCCCcchhcC
Q psy5845 66 GFYVQPTVFANVRDDMKIAREE 87 (87)
Q Consensus 66 g~~i~Ptii~~v~~~~~i~~eE 87 (87)
+.|++|.++.|-+..-.+|+.|
T Consensus 52 S~yfPPQV~V~dD~~vel~~ne 73 (258)
T COG2047 52 SPYFPPQVLVNDDSTVELMRNE 73 (258)
T ss_pred ccCCCCeeEecCCceEEeeece
Confidence 4589999997766555556544
No 211
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=21.88 E-value=1.5e+02 Score=22.42 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHhhccccccCCCCCCCC------ccccCCHHHHHHHHHHHHHHHHCC---CeEEe
Q psy5845 8 VFTKDLDKTNYVTQGLRAGTI------WGRKIDKEQMDKILEFIESGKSQG---AQLVA 57 (87)
Q Consensus 8 ~~l~~~~~~~~~g~~~~~~~~------~gpli~~~~~~rv~~~l~~a~~~G---a~i~~ 57 (87)
..+.+.++...+|.|.-.... .+=|||-.++.....++++++..| -+|..
T Consensus 223 m~lld~~~d~~fG~P~pt~v~vg~~~~vnIlitGH~l~~~eeLleqak~aGakgi~Vyt 281 (576)
T COG1151 223 MALLDKANDILFGTPEPTEVNVGDPEYVNILITGHDLADLEELLEQAEGAGAKGINVYT 281 (576)
T ss_pred HHHHHHHhhhhcCCCcceEeccCCCCCceEEeechhhhhhHHHHHHHHhcCCCceEEEE
Confidence 345667777778876432222 344888888888999999999888 45543
No 212
>PRK12855 hypothetical protein; Provisional
Probab=21.78 E-value=74 Score=18.30 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.0
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 27 ~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
..|..+.++...+-+.++.++|++.||.-+.|=..
T Consensus 48 ~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVVgvr~ 82 (103)
T PRK12855 48 GAYESKLKEARDIAMEEMKTLARQKNANAIVGIDV 82 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 35777888888889999999999999988887543
No 213
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.62 E-value=1.2e+02 Score=19.62 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=21.5
Q ss_pred ccCCHHHH--HHHHHHHHHHHHC-CCeEEeCCcc
Q psy5845 31 RKIDKEQM--DKILEFIESGKSQ-GAQLVAGGGR 61 (87)
Q Consensus 31 pli~~~~~--~rv~~~l~~a~~~-Ga~i~~gg~~ 61 (87)
-+|++.|| +++...+++..+. |-.+++-|-.
T Consensus 86 v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~ 119 (201)
T COG1435 86 VLIDEAQFFDEELVYVLNELADRLGIPVICYGLD 119 (201)
T ss_pred EEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccc
Confidence 57888888 6666666665555 8888776654
No 214
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=21.44 E-value=1.1e+02 Score=17.60 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=17.6
Q ss_pred CCccccCC-HHHHHHHHHHHHHHHHC
Q psy5845 27 TIWGRKID-KEQMDKILEFIESGKSQ 51 (87)
Q Consensus 27 ~~~gpli~-~~~~~rv~~~l~~a~~~ 51 (87)
+.-|||+. ..+...|..|+++....
T Consensus 58 ~FPGPL~~~ktkKkdV~kwl~~~i~~ 83 (118)
T PF12932_consen 58 SFPGPLVKGKTKKKDVIKWLEEKIEE 83 (118)
T ss_dssp HS-SSTTSTT--HHHHHHHHHHHHHH
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 45699999 88889999999876543
No 215
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=21.26 E-value=1.7e+02 Score=20.03 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 34 DKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
-+...+++.....+|.+.|+.++.
T Consensus 137 L~~aL~~l~~ea~~Av~~G~~ilI 160 (287)
T PF04898_consen 137 LEEALDRLCEEAEAAVREGANILI 160 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE
Confidence 477789999888999999998875
No 216
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=21.13 E-value=1e+02 Score=18.65 Aligned_cols=15 Identities=0% Similarity=0.317 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHH
Q psy5845 34 DKEQMDKILEFIESG 48 (87)
Q Consensus 34 ~~~~~~rv~~~l~~a 48 (87)
+++||.|+..+++++
T Consensus 116 teRH~~Rl~~L~q~s 130 (141)
T PF08625_consen 116 TERHFQRLDRLLQKS 130 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999999988764
No 217
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=21.11 E-value=2.5e+02 Score=18.40 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCC
Q psy5845 32 KIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRD 79 (87)
Q Consensus 32 li~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~ 79 (87)
+.+...|.|-...++. -+++++.++... .-..-.|.|+.+.+.
T Consensus 64 va~Hpny~rsl~~i~~---l~~~~I~~~~~~--~~~~aSPilV~d~~h 106 (215)
T PF07368_consen 64 VANHPNYLRSLKKIKC---LNAKTIVADFEN--VPPPASPILVCDFTH 106 (215)
T ss_pred hccCcHHHHHHHHHHh---cCCeEEEecccC--CCCCCCCEEEcCCCH
Confidence 4455667777666664 578888774332 112346777776553
No 218
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=21.06 E-value=1.3e+02 Score=21.25 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 33 IDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 33 i~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+...+-.+....+..+++.|.+++.||-.
T Consensus 47 v~~~a~~~~~~~i~~~~~~~~~vvvgGc~ 75 (430)
T TIGR01125 47 FIEDARQESIDTIGELADAGKKVIVTGCL 75 (430)
T ss_pred ccchHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 34445555667777777778999998854
No 219
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.06 E-value=1.8e+02 Score=18.85 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 35 KEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 35 ~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
+..++++.++++.|.++|+.+++=.
T Consensus 15 ~~n~~~~~~~i~~a~~~g~dlvvfP 39 (268)
T cd07580 15 DANLARSIELIREAADAGANLVVLP 39 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcC
Confidence 4677899999999888898887633
No 220
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.04 E-value=2.6e+02 Score=19.68 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEe
Q psy5845 4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVA 57 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~ 57 (87)
+.+.+.+....+-+.+-.|.+ .-|.+.++..++.+.++.. +++.-++.
T Consensus 154 ~~l~~~i~~ktk~i~ln~P~N---PTGav~~~~~l~~i~~~a~---~~~i~ii~ 201 (393)
T COG0436 154 EDLEAAITPKTKAIILNSPNN---PTGAVYSKEELKAIVELAR---EHDIIIIS 201 (393)
T ss_pred HHHHhhcCccceEEEEeCCCC---CcCcCCCHHHHHHHHHHHH---HcCeEEEE
Confidence 555566666666666665543 3699999999988877654 56766664
No 221
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=20.95 E-value=2.1e+02 Score=20.61 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=35.8
Q ss_pred CccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC------------CCCceEeeEEEe--eCCCCCcch
Q psy5845 28 IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------------DKGFYVQPTVFA--NVRDDMKIA 84 (87)
Q Consensus 28 ~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~------------~~g~~i~Ptii~--~v~~~~~i~ 84 (87)
.+-|-..+.|.++...++..|.+ .-+++||...+ -.|..+-||+.- .+++|.++|
T Consensus 183 ~~kpaatr~qaekalaml~~aer--plivagggiinadaa~l~~efael~gvpviptlmgwg~ipddhplm 251 (592)
T COG3960 183 VYKPAATRVQAEKALAMLIQAER--PLIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLM 251 (592)
T ss_pred cCCchhHHHHHHHHHHHHhhccC--cEEEecCceecccHHHHHHHHHHHcCCcccchhccccccCCcchhh
Confidence 35566788899999999987643 45666765321 136677788763 345666655
No 222
>PRK12856 hypothetical protein; Provisional
Probab=20.79 E-value=79 Score=18.16 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc
Q psy5845 10 TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61 (87)
Q Consensus 10 l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~ 61 (87)
+.+.++.+. |. ....+..++++..-+-+.++.++|.+.||.-+.|=..
T Consensus 35 ~~a~lr~iv-GG---~~~~Y~~~l~~aR~~A~~rm~~~A~~lGAnAVvgvr~ 82 (103)
T PRK12856 35 LFASVRDVV-GG---RAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDV 82 (103)
T ss_pred HHHHHHHHh-cC---cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 334555553 42 1235778888888888999999999999988887543
No 223
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.40 E-value=1.7e+02 Score=16.63 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=15.9
Q ss_pred CCHHHHHHH---HHHHHHHHHCCCeEEeCCc
Q psy5845 33 IDKEQMDKI---LEFIESGKSQGAQLVAGGG 60 (87)
Q Consensus 33 i~~~~~~rv---~~~l~~a~~~Ga~i~~gg~ 60 (87)
+.++|..|. .++++ ..++|-++++.|.
T Consensus 26 i~RPQrKr~K~~~~ml~-sL~kGD~VvT~gG 55 (97)
T COG1862 26 IIRPQRKRMKEHQELLN-SLKKGDEVVTIGG 55 (97)
T ss_pred hcCHHHHHHHHHHHHHH-hccCCCEEEEcCC
Confidence 444444444 33443 5678999998653
No 224
>KOG0238|consensus
Probab=20.37 E-value=1.5e+02 Score=22.50 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG 59 (87)
Q Consensus 26 ~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg 59 (87)
...+||-.+.+.|-++...++.|++.||+-+..|
T Consensus 44 av~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPG 77 (670)
T KOG0238|consen 44 AVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPG 77 (670)
T ss_pred eeecCCCchhhhhhhHHHHHHHHHhcCCceecCC
Confidence 3457999999999999999999999999998865
No 225
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=20.27 E-value=1.4e+02 Score=14.89 Aligned_cols=20 Identities=5% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q psy5845 33 IDKEQMDKILEFIESGKSQG 52 (87)
Q Consensus 33 i~~~~~~rv~~~l~~a~~~G 52 (87)
++....+++...+..+.+.|
T Consensus 3 ~sd~dR~~~~~~L~~a~a~G 22 (53)
T PF08044_consen 3 ASDADRERAVDLLRAAFAEG 22 (53)
T ss_pred CcHHHHHHHHHHHHHHHHCC
Confidence 56778888889999888776
No 226
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.19 E-value=2e+02 Score=19.85 Aligned_cols=45 Identities=4% Similarity=-0.197 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhccccccC-CCCCCCCccccCCHHHHHHHHHHHHHH
Q psy5845 4 TSAAVFTKDLDKTNYVTQ-GLRAGTIWGRKIDKEQMDKILEFIESG 48 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~-~~~~~~~~gpli~~~~~~rv~~~l~~a 48 (87)
+.++.++.++++-+.... -..+++-+..+....+++++..+.+-+
T Consensus 286 e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l~~~a 331 (339)
T PRK09121 286 EEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNALSAGA 331 (339)
T ss_pred HHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 567888887776442111 123456677888888999998887633
No 227
>COG5583 Uncharacterized small protein [Function unknown]
Probab=20.03 E-value=1e+02 Score=15.59 Aligned_cols=18 Identities=6% Similarity=-0.269 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhccccccC
Q psy5845 4 TSAAVFTKDLDKTNYVTQ 21 (87)
Q Consensus 4 ~~~~~~l~~~~~~~~~g~ 21 (87)
+.+.+++..+++.+++|.
T Consensus 8 ~~~~ekI~~~Le~lkyGs 25 (54)
T COG5583 8 PEVIEKIKKALEGLKYGS 25 (54)
T ss_pred hHHHHHHHHHHhhcccce
Confidence 456667777777777664
Done!