RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5845
(87 letters)
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 109 bits (274), Expect = 7e-30
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
T G +ID+EQ KILE IESGK +GA+L GG R GDKG+++QPTVF++V DDM+IA+
Sbjct: 325 KTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFSDVTDDMRIAK 384
Query: 86 EE 87
EE
Sbjct: 385 EE 386
Score = 46.2 bits (110), Expect = 2e-07
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+AAVFTKD+DK + LRAGT+W
Sbjct: 415 AAAVFTKDIDKAITFSNALRAGTVW 439
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 103 bits (258), Expect = 2e-27
Identities = 38/77 (49%), Positives = 50/77 (64%)
Query: 11 KDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
K + V T G ++ K Q DKIL +IESGK +GA L+ GG R G KG+++Q
Sbjct: 306 KARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQ 365
Query: 71 PTVFANVRDDMKIAREE 87
PTVF +V+DDMKIA+EE
Sbjct: 366 PTVFTDVKDDMKIAKEE 382
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFTKD++K V++ L+AGT+W
Sbjct: 411 AAGVFTKDINKALRVSRALKAGTVW 435
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 91.8 bits (228), Expect = 2e-23
Identities = 37/64 (57%), Positives = 50/64 (78%)
Query: 24 RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
R G G ++DKEQ +KIL +IE GK +GA L+ GG R G KG+Y+QPT+F++V+DDMKI
Sbjct: 319 RKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMKI 378
Query: 84 AREE 87
AR+E
Sbjct: 379 ARDE 382
Score = 37.9 bits (88), Expect = 2e-04
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VF+K++D N +++ L+AGT+W
Sbjct: 411 AAGVFSKNIDTANTLSRALKAGTVW 435
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 91.8 bits (228), Expect = 2e-23
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 24 RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
+ G G +ID EQ +KIL +I+SG GA L GG R G KG+Y+QPTVF+NV+DDM I
Sbjct: 373 KKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDMLI 432
Query: 84 AREE 87
A++E
Sbjct: 433 AQDE 436
Score = 36.3 bits (84), Expect = 6e-04
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT++LD N +++ LR GT+W
Sbjct: 465 AAGVFTQNLDTANTLSRALRVGTVW 489
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 88.4 bits (220), Expect = 3e-22
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 20 TQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYV 69
+ +R G T +G + DK+L +IE GK++GA+L+ GG R G +V
Sbjct: 308 VERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFV 367
Query: 70 QPTVFANVRDDMKIAREE 87
PTVF + DDM I REE
Sbjct: 368 APTVFTDCTDDMTIVREE 385
Score = 29.5 bits (67), Expect = 0.17
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT DL + + V L AG W
Sbjct: 414 AAGVFTADLSRAHRVIHQLEAGICW 438
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 88.0 bits (219), Expect = 3e-22
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 13 LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
++ + G L T G I K+Q +++L +IE K +GA+L+ GG +KG++V+
Sbjct: 290 VEAAKSLKVGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVE 349
Query: 71 PTVFANVRDDMKIAREE 87
PTV A+V DM+IA+EE
Sbjct: 350 PTVLADVTPDMRIAQEE 366
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT DL++ V + L AG +W
Sbjct: 395 AAGVFTNDLERALRVARRLEAGMVW 419
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 83.4 bits (207), Expect = 1e-20
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFANVRDDMKIAREE 87
+ + DK+L +IESGK++GA+LVAGG R GF+V+PTVF V DM+IAREE
Sbjct: 312 VSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVTPDMRIAREE 368
Score = 32.2 bits (74), Expect = 0.020
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A+V+T DL + + V + LRAGT+W
Sbjct: 398 ASVWTSDLSRAHRVARRLRAGTVW 421
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 82.6 bits (204), Expect = 3e-20
Identities = 31/58 (53%), Positives = 46/58 (79%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G ++DK+Q +KIL +IE GK +GA L+ GG GDKG+Y++PT+F +V +DMKIA++E
Sbjct: 342 GPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDMKIAQDE 399
Score = 32.9 bits (75), Expect = 0.009
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A + TKDLD N V++ +RAGTIW
Sbjct: 428 AAGIVTKDLDVANTVSRSIRAGTIW 452
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 81.5 bits (202), Expect = 6e-20
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AG-DKGFYVQPTVFANVRDDMKIA 84
T G Q +++ +I G+++GA+LV GGGR AG D+G++V+PT+FA+V +DM+IA
Sbjct: 316 TQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDNDMRIA 375
Query: 85 REE 87
+EE
Sbjct: 376 QEE 378
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 81.1 bits (201), Expect = 9e-20
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFAN 76
V L G G + + Q++K L +IE +S+GA+LV GG R D+G+Y+ P +FA
Sbjct: 307 VGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEGYYLAPALFAG 366
Query: 77 VRDDMKIAREE 87
V +DM+IAREE
Sbjct: 367 VTNDMRIAREE 377
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 81.1 bits (201), Expect = 1e-19
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--GDKGFYVQPTVFANVRDDMKI 83
GT+ G I Q D++ +I G+ +GA+LV GGGR DKGFYV+PT+FA+V +DM+I
Sbjct: 302 GTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDNDMRI 361
Query: 84 AREE 87
A+EE
Sbjct: 362 AQEE 365
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 77.4 bits (191), Expect = 2e-18
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 25 AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANVRDD 80
T G + ++Q D+++ +I+S K +GA+LV GGGR A + GFYV+PTVFA+V
Sbjct: 294 PATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTPG 353
Query: 81 MKIAREE 87
M+IAREE
Sbjct: 354 MRIAREE 360
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 77.2 bits (190), Expect = 2e-18
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 11 KDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
K+ K V T G ++ + Q ++I+ +IESGK++GA + GG R G++G++++
Sbjct: 309 KEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIE 368
Query: 71 PTVFANVRDDMKIAREE 87
PT+F +V +DMKI +EE
Sbjct: 369 PTIFTDVTEDMKIVKEE 385
Score = 30.2 bits (68), Expect = 0.091
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+AAVFT +++ V L+AGT+W
Sbjct: 414 AAAVFTNNINNAIRVANALKAGTVW 438
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 76.9 bits (190), Expect = 3e-18
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 15 KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTV 73
K V L T G I Q+D++L +IE K++GA+L+ GG R G KG++V PTV
Sbjct: 264 KALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTV 323
Query: 74 FANVRDDMKIAREE 87
+V DM IA+EE
Sbjct: 324 LTDVDPDMPIAQEE 337
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT+DL++ V + L AGT+W
Sbjct: 366 AAGVFTRDLERALRVAERLEAGTVW 390
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 76.6 bits (189), Expect = 4e-18
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 13 LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKG 66
+++ + G L T+ G ++ K+Q++KIL +++ GK +GA+++ GG R DKG
Sbjct: 304 VERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKG 363
Query: 67 FYVQPTVFANVRDDMKIAREE 87
++ +PT+ +DM+I +EE
Sbjct: 364 YFYEPTLIKGGNNDMRIFQEE 384
Score = 27.3 bits (61), Expect = 1.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
V+T+D+++ V +G++ G +W
Sbjct: 414 GGVWTRDINRALRVARGIQTGRVW 437
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 75.6 bits (187), Expect = 8e-18
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGG-GR-AG-DKGFYVQPTVFANVRDDMKIAREE 87
Q D++ +I+ G +GA+LVAGG GR G ++G++V+PTVFA+V DM IAREE
Sbjct: 316 ASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTPDMTIAREE 373
Score = 28.6 bits (65), Expect = 0.36
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ V++ D ++ V + LRAG +
Sbjct: 402 AGYVWSADPERARAVARRLRAGQVH 426
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 75.6 bits (186), Expect = 1e-17
Identities = 26/61 (42%), Positives = 45/61 (73%)
Query: 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
T G + + Q D++L++++ G+ +GA+L+ GG R G +GF+V+PT+FA V +M+IA+E
Sbjct: 297 TQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMRIAQE 356
Query: 87 E 87
E
Sbjct: 357 E 357
Score = 28.9 bits (65), Expect = 0.23
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A V+T+DL + + V L+AGT+W
Sbjct: 387 AGVWTRDLGRAHRVAAALKAGTVW 410
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 74.8 bits (184), Expect = 2e-17
Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANV 77
T G I DK+L +IE GK++GA L GGGR GF+V+PTVFA+
Sbjct: 308 PFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQNGFFVEPTVFADC 367
Query: 78 RDDMKIAREE 87
DDM I REE
Sbjct: 368 TDDMTIVREE 377
Score = 33.2 bits (76), Expect = 0.007
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ VFT DL + + V L AGT+W
Sbjct: 406 AGGVFTADLGRAHRVADQLEAGTVW 430
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 74.3 bits (183), Expect = 2e-17
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANV 77
GL A T G + E +K+L +I+ GK +GA+LV GG R KG++V+PT+F +V
Sbjct: 309 GLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDELAKGYFVEPTIFDDV 368
Query: 78 RDDMKIAREE 87
M+I +EE
Sbjct: 369 DRTMRIVQEE 378
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ AV+TKD+ + N V + LRAGT+W
Sbjct: 407 AGAVWTKDIARANRVARRLRAGTVW 431
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 73.6 bits (181), Expect = 5e-17
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 9 FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDK 65
F + + + V T+ G ++ K Q D++L +IE GK +GA+LV GG K
Sbjct: 307 FVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGK 366
Query: 66 GFYVQPTVFANVRDDMKIAREE 87
G+++ PT+F +V DM+I +EE
Sbjct: 367 GYFIPPTIFTDVPQDMRIVKEE 388
Score = 31.6 bits (72), Expect = 0.025
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AAVFTKD+ + + V + L AG +W
Sbjct: 418 AAVFTKDIRRAHRVARELEAGMVW 441
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 72.4 bits (178), Expect = 1e-16
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTVFANVRDDMKIAREE 87
G I++ Q+ KI +++++G+++GA L+ GG R A G + QPT+F +V DM IAREE
Sbjct: 302 GAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDMAIAREE 360
Score = 34.2 bits (79), Expect = 0.003
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
SA V++KD+D V + +RAGT+W
Sbjct: 389 SAGVWSKDIDTALTVARRIRAGTVW 413
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 72.0 bits (177), Expect = 2e-16
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Query: 20 TQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFY 68
T+ +R G T G I +E ++K+L +IES K +GA+++ GG R + GFY
Sbjct: 282 TKKIRIGDPLDEDTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFY 341
Query: 69 VQPTVFANVRDDMKIAREE 87
V P V + DDM I REE
Sbjct: 342 VSPCVLTDCTDDMTIVREE 360
Score = 29.6 bits (67), Expect = 0.15
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT+DL + + V L+AGT W
Sbjct: 389 AAGVFTRDLQRAHRVIAQLQAGTCW 413
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 71.7 bits (176), Expect = 2e-16
Identities = 27/65 (41%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Query: 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANVRDDMK 82
T G +++K+Q+DKIL +++ K +GA+++ GG R DKGF+++PT+ NV +DM+
Sbjct: 315 TQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVTNDMR 374
Query: 83 IAREE 87
+A+EE
Sbjct: 375 VAQEE 379
Score = 27.4 bits (61), Expect = 0.85
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 7 AVFTKDLDKTNYVTQGLRAGTIW 29
VFTKD+++ V + + G +W
Sbjct: 410 GVFTKDINRALRVARAVETGRVW 432
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 71.0 bits (175), Expect = 3e-16
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 37 QMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVRDDMKIAREE 87
Q++K+ ++ + +GA+++ GG R G++ +PT+ A+V +DM+IA+EE
Sbjct: 309 QLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVTNDMRIAQEE 363
Score = 31.0 bits (71), Expect = 0.046
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A ++T+DL + + V + + AGT+W
Sbjct: 393 AGIWTRDLARAHRVARAIEAGTVW 416
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 70.5 bits (174), Expect = 5e-16
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
GL GT G I++ ++K+ +E ++GA+++ GG R G G++ +PTV +V DDM
Sbjct: 292 GLDEGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDM 351
Query: 82 KIAREE 87
I EE
Sbjct: 352 LIMNEE 357
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 69.9 bits (172), Expect = 8e-16
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--GDKGFYVQPTVFANVRD 79
L GT+ G I++ ++K L IE KSQG ++ GG R G+ G YV+PT+ V D
Sbjct: 311 PLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIVTGVTD 370
Query: 80 DMKIAREE 87
D +I +EE
Sbjct: 371 DARIVQEE 378
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 69.8 bits (171), Expect = 1e-15
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 10 TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGF 67
K++ ++ + +G R G + + + Q +K+L+FI + KS+GA ++ GG R KGF
Sbjct: 318 AKNIKISDPLEEGCRLGPV----VSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGF 373
Query: 68 YVQPTVFANVRDDMKIAREE 87
+++PT+ +V M+I REE
Sbjct: 374 FIEPTIITDVTTSMQIWREE 393
Score = 28.2 bits (63), Expect = 0.41
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AV + DL++ V++ +AG +W
Sbjct: 423 GAVISNDLERCERVSEAFQAGIVW 446
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 69.6 bits (171), Expect = 1e-15
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I++ DKI+ +IE GK +G +LV GG KG+++QPT+FA+V +I +EE
Sbjct: 362 INQASFDKIMSYIEIGKEEG-RLVLGGEGDDSKGYFIQPTIFADVDPKARIMQEE 415
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 68.9 bits (169), Expect = 2e-15
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G I +EQ+D++ +IE ++GA+L+AGG R G G++V+PT+ V DM+IAREE
Sbjct: 316 GPLISEEQLDRVEGYIEDAVAEGARLLAGGKRPG--GYFVEPTILEGVTPDMRIAREE 371
Score = 30.7 bits (70), Expect = 0.053
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+AA+FT+DL + V + L AG +
Sbjct: 400 AAAIFTRDLARAFRVARRLEAGMVG 424
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 68.1 bits (167), Expect = 4e-15
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFAN 76
V L G G + + Q +K+L FI GK +GA+L+ GG R +KG+++ PTVFA+
Sbjct: 292 VGDPLEEGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFAD 351
Query: 77 VRDDMKIAREE 87
V D +I REE
Sbjct: 352 VPTDSRIWREE 362
Score = 28.5 bits (64), Expect = 0.31
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AAV ++D ++ + V + L AG +W
Sbjct: 392 AAVISRDAERCDRVAEALEAGIVW 415
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 67.4 bits (165), Expect = 7e-15
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKGFYVQPTVF 74
V GL T G I++ Q++K+L + E GK +GA L+ GG R +KG++V+PTVF
Sbjct: 307 VGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTVF 366
Query: 75 ANVRDDMKIAREE 87
+V DM+IA+EE
Sbjct: 367 TDVTPDMRIAQEE 379
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 67.2 bits (165), Expect = 8e-15
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVRDDMKIAREE 87
I KE ++K+L ++E +++GA ++ GGGR + G++V+PTV + +D ++A+EE
Sbjct: 303 ISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDNDSRVAQEE 361
Score = 30.6 bits (70), Expect = 0.056
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A V+T+DL + + V + L AGT+W
Sbjct: 390 AAYVWTRDLGRAHRVARRLEAGTVW 414
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 64.9 bits (159), Expect = 5e-14
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 15 KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
K V GL GT G +K Q DK+ E +E K++GA+++AGG G+++ PT+
Sbjct: 280 KAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIV 339
Query: 75 ANVRDDMKIAREE 87
+ + +I EE
Sbjct: 340 DDPPEGSRIVDEE 352
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 63.8 bits (156), Expect = 1e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGD---KGFYVQPTVFANVRDDMKIAREE 87
I +Q+D++ F+ +++GA++VAGG A G++V PT+ +V D ++A+EE
Sbjct: 302 ISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDSRLAQEE 359
Score = 26.0 bits (58), Expect = 2.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTI 28
A V+T+D D+ V + LRAG +
Sbjct: 389 AGVWTRDGDRALRVARRLRAGQV 411
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 63.7 bits (155), Expect = 1e-13
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L T G + K +DK++E+ E G +GA LV GG + GF+ +PTVF +V D M
Sbjct: 324 LDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDVEDHMF 383
Query: 83 IAREE 87
IA+EE
Sbjct: 384 IAKEE 388
Score = 30.2 bits (68), Expect = 0.096
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
++ VFTKD++K YV+ L AGT++
Sbjct: 419 ASGVFTKDINKALYVSDKLEAGTVF 443
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 63.8 bits (156), Expect = 1e-13
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGFYVQPTVFANVRDDMKIAREE 87
IDK D+I +IE GKS+G +L+ GG +G++VQPT+FA+V D ++A+EE
Sbjct: 358 IDKGARDRIRRYIEIGKSEG-RLLLGGEVLELAAEGYFVQPTIFADVPPDHRLAQEE 413
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 63.7 bits (156), Expect = 1e-13
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
T+ G I++ Q+D++ +E + GA+L+ GG +G + QPTV ++V DM
Sbjct: 275 RDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTY---EGLFYQPTVLSDVTPDMP 331
Query: 83 IAREE 87
I REE
Sbjct: 332 IFREE 336
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 60.4 bits (147), Expect = 2e-12
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 25 AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-GDKGFYVQPTVFANVRDDMKI 83
A T G +++ +DK+ E +E GA L+ GG R G+KG++ +PTV NVR DM+I
Sbjct: 311 AATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDMEI 370
Query: 84 AREE 87
+EE
Sbjct: 371 VQEE 374
Score = 25.7 bits (57), Expect = 3.9
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
++ ++T++L+ T L G +
Sbjct: 403 TSYIYTENLNTAMRATNELEFGETY 427
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 59.6 bits (145), Expect = 4e-12
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
T+ G I++ Q+D +L+ IE +GA L+ GG G+ ++PTV ++V +DM+IAR
Sbjct: 310 DTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEAEGN---VLEPTVLSDVTNDMEIAR 366
Query: 86 EE 87
EE
Sbjct: 367 EE 368
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 58.3 bits (142), Expect = 1e-11
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-----AGDKGFYVQPTV 73
V G G G I ++I IESG +GA+LV G R + G +V PT+
Sbjct: 307 VGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDG-RGVKVPGYENGNFVGPTI 365
Query: 74 FANVRDDMKIAREE 87
NV DMKI +EE
Sbjct: 366 LDNVTPDMKIYKEE 379
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 57.9 bits (140), Expect = 1e-11
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDK--GFYVQPTVFANVRDDMKI 83
GT+ G I Q D++ +++ ++G + GGGR D+ GF+V+PTV A + ++ ++
Sbjct: 321 GTVCGPVISARQRDRVQSYLDLAVAEGGRFACGGGRPADRDRGFFVEPTVIAGLDNNARV 380
Query: 84 AREE 87
AREE
Sbjct: 381 AREE 384
Score = 24.7 bits (54), Expect = 7.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTI 28
S VF D ++ V +R GT+
Sbjct: 413 SGTVFGADPERAAAVAARVRTGTV 436
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 57.1 bits (138), Expect = 3e-11
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 13 LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-----GDK 65
L++ + QG L T+ G + EQ++KIL +I+ GK +GA+++ GG R
Sbjct: 304 LERVKAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGG 363
Query: 66 GFYVQPTVFANVRDDMKIAREE 87
G+YV T + M+I +EE
Sbjct: 364 GYYVPTTFKGG--NKMRIFQEE 383
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 57.0 bits (138), Expect = 3e-11
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 25 AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIA 84
T+ G I Q+++I +E ++GA+L+ GG G+ + QPTV +V DM+I
Sbjct: 297 PDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKYDGN---FYQPTVLTDVTPDMRIF 353
Query: 85 REE 87
REE
Sbjct: 354 REE 356
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 56.2 bits (136), Expect = 6e-11
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
V T G Q +++ F+E A+++ GG RA G++ +PTV A V
Sbjct: 289 VGDPDDEDTEMGPLNSAAQRERVAGFVE-RAPAHARVLTGGRRAEGPGYFYEPTVVAGVA 347
Query: 79 DDMKIAREE 87
D +I +EE
Sbjct: 348 QDDEIVQEE 356
Score = 26.1 bits (58), Expect = 2.2
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+++V+T+D+ + ++ L GT+W
Sbjct: 385 ASSVWTRDVGRAMRLSARLDFGTVW 409
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 55.9 bits (135), Expect = 7e-11
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
V G G G I++ + K+ ++ S+GA+++ GG R G + +PTV +V
Sbjct: 332 VGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPTVLGDVT 391
Query: 79 DDMKIAREE 87
+DM I REE
Sbjct: 392 EDMLIFREE 400
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 55.7 bits (135), Expect = 9e-11
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIWGRKIDKE--------QMDKILEFIESGKSQGAQLVA 57
+V+ + + + + LR G D + Q+D + ++ ++GA+ +
Sbjct: 270 ESVYDEFVARLVAKARALRPG--ADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALT 327
Query: 58 GGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
GG R+ G + +PTV +V DM + REE
Sbjct: 328 GGARSNGGGPFYEPTVLTDVPHDMDVMREE 357
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTI 28
SA+VF++DL + + + L AG +
Sbjct: 386 SASVFSRDLARAEAIARRLEAGAV 409
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 55.0 bits (133), Expect = 2e-10
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 21 QGLRAGTIWGRKID------KEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQ 70
Q LR G +D + D++ E + +GA+L+AGG R +G Y
Sbjct: 291 QALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFP 350
Query: 71 PTVFANVRDDMKIAREE 87
PT+ +V DMKIA+EE
Sbjct: 351 PTLLVDVTPDMKIAQEE 367
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 54.9 bits (132), Expect = 2e-10
Identities = 24/55 (43%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID++ +KI+E+IE GK++G +LV+GG KG+++ PT+FA+V ++A+EE
Sbjct: 359 IDQKSFNKIMEYIEIGKAEG-RLVSGGCGDDSKGYFIGPTIFADVDRKARLAQEE 412
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 54.7 bits (132), Expect = 2e-10
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 15 KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
K V GL G G I+++ ++K+ + I +GA++V GG R G + +PTV
Sbjct: 286 KKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVL 345
Query: 75 ANVRDDMKIAREE 87
+NV DM +++EE
Sbjct: 346 SNVTADMLVSKEE 358
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 53.0 bits (128), Expect = 9e-10
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 33 IDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I D++ F+E K+ G ++V GG KG+Y +PT+ A R D +I + E
Sbjct: 323 ISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDDEIVQRE 378
Score = 24.9 bits (55), Expect = 6.7
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
++V+T+D+ + + V+ L+ G W
Sbjct: 408 SSVWTRDVGRAHRVSARLQYGCTW 431
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 52.6 bits (127), Expect = 1e-09
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L T G I + + ++I E++E GA+L+ GG R G ++PTV +V DMK
Sbjct: 297 LDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKRDGA---ILEPTVLTDVPPDMK 353
Query: 83 IAREE 87
+ EE
Sbjct: 354 VVCEE 358
Score = 26.4 bits (59), Expect = 1.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTI 28
A VFT DL K + L G +
Sbjct: 388 AGVFTNDLQKALKAARELEVGGV 410
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 52.8 bits (128), Expect = 1e-09
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 35 KEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
K+ D++ E +E + GA L+ GG R G + PTV +V M EE
Sbjct: 283 KDLRDELHEQVEEAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGMPAYDEE 335
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 52.0 bits (125), Expect = 2e-09
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGG----GRAGDKGFYVQPTVFANVRDD 80
G I I ++Q K+ +I+ G S GA ++ GG GF+VQPT+F+ V ++
Sbjct: 300 GAI----ISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGVDNE 355
Query: 81 MKIAREE 87
++AREE
Sbjct: 356 WRLAREE 362
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 51.4 bits (124), Expect = 2e-09
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID + D + I+ ++GA ++ GGGR G + PT+ V DM++A EE
Sbjct: 325 IDPKSADFVEGLIDDAVAKGATVLNGGGREGGN--LIYPTLLDPVTPDMRLAWEE 377
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 51.1 bits (122), Expect = 4e-09
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
+ GL G G ID++ + K+ E I +GA++V GG G + QPT+ +V
Sbjct: 318 IGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVP 377
Query: 79 DDMKIAREE 87
+ K+A+EE
Sbjct: 378 ANAKVAKEE 386
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 51.0 bits (122), Expect = 4e-09
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-------KGFYVQPTVFA 75
L T G I E + K+L ++E+ + +GA ++ GG RA +G YV PTVF
Sbjct: 311 LDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFT 370
Query: 76 NVRDDMKIAREE 87
+ M+IA+EE
Sbjct: 371 GADNHMRIAQEE 382
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 50.5 bits (121), Expect = 7e-09
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G I+ ++++ + + +GA++ GG KG+Y PT+ +VR +M I EE
Sbjct: 255 GPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEE 312
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 49.0 bits (117), Expect = 2e-08
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
+ ++G ++ DK+ +++ +++G ++V GG +G++VQPT+ D
Sbjct: 316 PMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADS 375
Query: 82 KIAREE 87
++ REE
Sbjct: 376 RLMREE 381
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 49.1 bits (118), Expect = 2e-08
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L GT+ G K +D L IE KSQG ++ GG G YV+PT+ D
Sbjct: 311 LDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTI-VEGLSDAP 369
Query: 83 IAREE 87
I +EE
Sbjct: 370 IVKEE 374
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 47.0 bits (112), Expect = 1e-07
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-----RAGDKGFYVQPTVFANVRDD 80
T G I E DK+L + +GA +V GGG A G +VQPT++ + D
Sbjct: 319 ATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGLPDS 378
Query: 81 MKIAREE 87
++ EE
Sbjct: 379 ARVVTEE 385
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 46.6 bits (111), Expect = 1e-07
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G +D Q+ +I E +E G+++GA + G KG + PT+F NV +IA+EE
Sbjct: 329 GAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASRIAQEE 386
Score = 27.4 bits (61), Expect = 1.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIWG 30
+A+V++++L V L+AG +W
Sbjct: 415 AASVWSENLSLALEVALSLKAGVVWI 440
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 46.4 bits (110), Expect = 2e-07
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
GT G ID EQ K+L +IE GK++G QLV GG R +G++V PTV V +IA+
Sbjct: 339 GTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKRLEGEGYFVAPTVVEEVPPKARIAQ 397
Query: 86 EE 87
EE
Sbjct: 398 EE 399
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 46.1 bits (110), Expect = 2e-07
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I+ Q+D++ ++ + GA+L AGG G + +PTV + V+ M EE
Sbjct: 296 INARQLDRVHAIVDDSVAAGARLEAGGTY---DGLFYRPTVLSGVKPGMPAFDEE 347
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 45.3 bits (108), Expect = 4e-07
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 33 IDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID++ D+I +I+ KS A+++AGG G++V+PTV K+ EE
Sbjct: 361 IDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKHKLMTEE 416
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 45.3 bits (108), Expect = 4e-07
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVFANVRDDMKIAREE 87
+ D++ E ++ S+GA+LV GG G + PT+ NV DM I EE
Sbjct: 282 VSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDIYSEE 337
Score = 24.8 bits (55), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAG 26
SAAVFT+DL + V + + +G
Sbjct: 366 SAAVFTRDLARALAVAKRIESG 387
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 44.6 bits (106), Expect = 6e-07
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L T G I E ++++ + +G +++ GG D+G + PTV N DM
Sbjct: 299 LDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGG--KRDEGSFFPPTVLENDTPDMI 356
Query: 83 IAREE 87
+ +EE
Sbjct: 357 VMKEE 361
Score = 25.4 bits (56), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTI 28
A+VFT D+++ V + L AG +
Sbjct: 391 ASVFTNDINRALKVARELEAGGV 413
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 44.9 bits (107), Expect = 6e-07
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKG--FYVQPTVFANVRDDMKIAREE 87
I + Q++ + ++ ++GA ++AGG D G FY +PTV V DM++AREE
Sbjct: 338 ISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFY-EPTVLTGVTPDMELAREE 393
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 43.4 bits (103), Expect = 2e-06
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
T G I + + +++ ++ GA+L+ GG R G ++PT+ +V DM+
Sbjct: 296 KDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGKR---DGALLEPTILEDVPPDME 352
Query: 83 IAREE 87
+ EE
Sbjct: 353 VNCEE 357
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 43.4 bits (103), Expect = 2e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTVFANVRDDMKIAREE 87
R ++ D++ ++ ++GA++ GG A + Y+ PTV NV DMKI +EE
Sbjct: 281 ARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAAQR--YIAPTVLTNVTPDMKIMQEE 337
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 42.7 bits (101), Expect = 4e-06
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKG--FYVQPTVFANVRD 79
L G G I + Q+D++ ++ ++GA ++AGG D G FY +PTV V +
Sbjct: 291 ALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFY-EPTVLTGVTE 349
Query: 80 DMKIAREE 87
DM++ EE
Sbjct: 350 DMELFAEE 357
Score = 24.6 bits (54), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTI 28
A+V+T+D + + LRAGT+
Sbjct: 387 ASVWTRDGARGRRIAARLRAGTV 409
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 42.2 bits (99), Expect = 6e-06
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGF----YVQPTVFANV 77
G G G I + D++ I G ++GA+++ G G+ +V PT+ V
Sbjct: 309 GDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGYEEGNWVGPTLLERV 368
Query: 78 RDDMKIAREE 87
MK +EE
Sbjct: 369 PPTMKAYQEE 378
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 41.8 bits (99), Expect = 7e-06
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR---AGDKGFYVQPTVFANVRD 79
L T G + D + I ++GA+ + G G Y+ PTV NV
Sbjct: 291 LDPSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDH 350
Query: 80 DMKIAREE 87
M++ REE
Sbjct: 351 SMRVMREE 358
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 41.0 bits (96), Expect = 1e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L T G ID D + FI G+S+G L+ GR + PT+F +V +
Sbjct: 335 LDPATTMGTLIDCAHADSVHSFIREGESKGQLLL--DGRNAGLAAAIGPTIFVDVDPNAS 392
Query: 83 IAREE 87
++REE
Sbjct: 393 LSREE 397
Score = 24.9 bits (54), Expect = 7.8
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AAV+T+DL + + +++ L+AG+++
Sbjct: 427 AAVWTRDLSRAHRMSRRLKAGSVF 450
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 40.9 bits (96), Expect = 2e-05
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
T G I ++D++ E++ + GA+L+ GG R D + PTV + D K
Sbjct: 298 TDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRLSDTTY--APTVLLDPPRDAK 355
Query: 83 IAREE 87
++ +E
Sbjct: 356 VSTQE 360
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 39.2 bits (92), Expect = 5e-05
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD---KGFYVQPTVFA 75
V GL + G ID+ +D++ +E + GA++V GG + KG +++PT+
Sbjct: 290 VGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLE 349
Query: 76 NVRDDMKIAREE 87
D I +EE
Sbjct: 350 VDDPDADIVQEE 361
Score = 36.2 bits (84), Expect = 7e-04
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A+V+T+DL + V + +RAGT+W
Sbjct: 390 AASVWTRDLARAMRVARAIRAGTVW 414
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 39.3 bits (92), Expect = 5e-05
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 39 DKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
D++ + ++ + GA ++ GG R G++ PTV ++ DM++ EE
Sbjct: 314 DEVEKQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMRLYTEE 362
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 39.4 bits (93), Expect = 6e-05
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
GR I++ D++ ++ GK V GG+ + Y+ PT+ +V D + +EE
Sbjct: 279 GRIINERHFDRLASLLDDGK------VVIGGQVDKEERYIAPTILDDVSPDSPLMQEE 330
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
GR I+++ D++ +++GK + GG + Y++PT+ NV D + +EE
Sbjct: 279 GRIINEKHFDRLAGLLDNGK------IVFGGNTDRETLYIEPTILDNVTWDDPVMQEE 330
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 38.6 bits (90), Expect = 1e-04
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGKSQGA--QLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
GT G ID++ KI+++IE KS + ++AGG G++V+PTV + +
Sbjct: 353 GTFMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGGKYDDSVGYFVEPTVVESKDPQEPL 412
Query: 84 AREE 87
+EE
Sbjct: 413 MKEE 416
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
GR I+ ++ + + GK VA GG+ +K Y+ PTV +V+ + +EE
Sbjct: 279 GRIINDRHFQRLKKLLSGGK------VAIGGQTDEKERYIAPTVLTDVKPSDPVMQEE 330
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 37.7 bits (87), Expect = 2e-04
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 37 QMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
++++++ +E K+ G +++ GG + G+Y PT+ A + D I ++E
Sbjct: 326 HLERVMKAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDDAIVQKE 377
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 36.5 bits (85), Expect = 5e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
+ R +++ ++ E I+ + V GG + YV PT+ N D + +EE
Sbjct: 287 YSRIVNEFHTKRLAELIKDHGGK----VVYGGEVDIENKYVAPTIIVNPDLDSPLMQEE 341
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 36.4 bits (84), Expect = 5e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 39 DKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
D++ +E+ ++GA+L+ GG + G Y PTV ANV +M REE
Sbjct: 317 DELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEMTAFREE 365
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 36.3 bits (84), Expect = 6e-04
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L T G I +E +++ ++E GA+L+ GG R G +PTV +V D K
Sbjct: 297 LDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGER---DGALFKPTVLEDVPRDTK 353
Query: 83 IAREE 87
++ EE
Sbjct: 354 LSTEE 358
Score = 26.6 bits (59), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 6 AAVFTKDLDKTNYVTQGLRAG 26
A +FT+DL+ + L G
Sbjct: 388 AGIFTRDLNVAFKAAEKLEVG 408
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 36.3 bits (83), Expect = 7e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVF 74
VT G G I K+ ++I I+SG GA+L+ G +KG ++ PT+
Sbjct: 419 VTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTIL 478
Query: 75 ANVRDDMKIAREE 87
+ V DM+ +EE
Sbjct: 479 SGVTPDMECYKEE 491
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 36.2 bits (84), Expect = 7e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
T G ID+E +I +E +QGA+++ G R +G PTV +V D ++ E
Sbjct: 298 TDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQR---QGALYAPTVLDHVPPDAELVTE 354
Query: 87 E 87
E
Sbjct: 355 E 355
Score = 25.4 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTI 28
S+ V T DLD + + L GT+
Sbjct: 384 SSGVCTNDLDTIKRLVERLDVGTV 407
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 35.2 bits (81), Expect = 0.001
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
L GT+ G E + IE KSQG +++ GG +G +VQPT+ + D
Sbjct: 333 LEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTI-VEISPDAD 391
Query: 83 IAREE 87
+ +EE
Sbjct: 392 VVKEE 396
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A VFT+DL++ V + LRAGT++
Sbjct: 301 TAGVFTRDLNRALRVAERLRAGTVY 325
Score = 29.9 bits (68), Expect = 0.12
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 72 TVFANVRDDMKIAREE 87
TV +V DM IA+EE
Sbjct: 257 TVLVDVDPDMPIAQEE 272
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 34.0 bits (79), Expect = 0.004
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLV--AGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I++ ++ +E +++GA+++ G + PT+ NV DDM++ +EE
Sbjct: 282 INERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDDMRVMQEE 338
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 30.6 bits (69), Expect = 0.072
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G ID+ + +QGA+L+ G R G Y PTV V M + REE
Sbjct: 320 GTVIDEAAAILFEARVNEAIAQGARLLLGNVRDG--ALY-APTVLDRVDPSMTLVREE 374
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 30.1 bits (68), Expect = 0.083
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 44 FIES----GKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
FIE K +GA R G+ + P + NVR DM+IA EE
Sbjct: 347 FIEGLVMDAKEKGATFCQEWKREGN---LIWPLLLDNVRPDMRIAWEE 391
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and
similar proteins (class 1 nitrilases). Nitrilases
(nitrile aminohydrolases, EC:3.5.5.1) hydrolyze
nitriles (RCN) to ammonia and the corresponding
carboxylic acid. Most nitrilases prefer aromatic
nitriles, some prefer arylacetonitriles and others
aliphatic nitriles. This group includes the nitrilase
cyanide dihydratase (CDH), which hydrolyzes inorganic
cyanide (HCN) to produce formate. It also includes
cyanide hydratase (CH), which hydrolyzes HCN to
formamide. This group includes four Arabidopsis
thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a
strong substrate preference for phenylpropionitrile
(PPN) and other nitriles which may originate from the
breakdown of glucosinolates. The product of PPN
hydrolysis, phenylacetic acid has auxin activity.
AthNIT1-3 can also convert indoacetonitrile to
indole-3-acetic acid (IAA, auxin), but with a lower
affinity and velocity. From their expression patterns,
it has been speculated that NIT3 may produce IAA during
the early stages of germination, and that NIT3 may
produce IAA during embryo development and maturation.
AthNIT4 has a strong substrate specificity for the
nitrile, beta-cyano-L-alanine (Ala(CN)), an
intermediate of cyanide detoxification. AthNIT4 has
both a nitrilase activity and a nitrile hydratase
(NHase) activity, which generate aspartic acid and
asparagine respectively from Ala(CN). NHase catalyzes
the hydration of nitriles to their corresponding
amides. This subgroup belongs to a larger nitrilase
superfamily comprised of belong to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 1.
Length = 297
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 25 AGTIWGRKIDKEQ-MDKILEFIESGKSQGAQLVA 57
A ++ +D ++K IE + GAQLV
Sbjct: 8 AAPVF---LDLAATVEKACRLIEEAAANGAQLVV 38
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 28.0 bits (62), Expect = 0.55
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 30 GRKIDKEQMDKILEFIESGKSQG---AQLVAGGGRAGDKGFYVQPTVF 74
G ID E +L IE AQL RA G +V PT+F
Sbjct: 346 GPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPTLF 393
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 27.9 bits (63), Expect = 0.55
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 33 IDKEQMDKILEFIESGKSQG---AQLVAGGGRAGDKGFYVQPTVF 74
ID E I IE+ ++ G QL +KG +V PT+
Sbjct: 865 IDAEAQANIEAHIEAMRAAGRLVHQLPL--PAETEKGTFVAPTLI 907
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 27.0 bits (60), Expect = 1.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 34 DKEQMDKILEFIESGKSQGAQLV----AGGGRAG 63
D E +DKI++FIE S+G ++V G GR+G
Sbjct: 87 DLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSG 120
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD 80
R ++ +++ +++ K ++V GG F + PT+ ++V D
Sbjct: 287 TRIVNPRHFNRLKSLLDTTK---GKVVIGGEMDEATRF-IPPTIVSDVSWD 333
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT,
glutaminase) domain of glutamine-dependent NAD
synthetases (class 7 and 8 nitrilases).
Glutamine-dependent NAD synthetases are bifunctional
enzymes, which have an N-terminal GAT domain and a
C-terminal NAD+ synthetase domain. The GAT domain is a
glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine
to L-glutamate and ammonia. The ammonia is used by the
NAD+ synthetase domain in the ATP-dependent amidation
of nicotinic acid adenine dinucleotide. Glutamine
aminotransferases are categorized depending on their
active site residues into different unrelated classes.
This class of GAT domain belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to classes 7 and 8. Members of
this superfamily generally form homomeric complexes,
the basic building block of which is a homodimer.
Mycobacterium tuberculosis glutamine-dependent NAD+
synthetase forms a homooctamer.
Length = 261
Score = 25.9 bits (58), Expect = 2.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 39 DKILEFIESGKSQGAQLV 56
+KILE I K+QGA LV
Sbjct: 19 EKILEAIREAKAQGADLV 36
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 25.8 bits (57), Expect = 2.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 42 LEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
L + S ++V GG R Y++PT+ + D I EE
Sbjct: 292 LSRLLDDPSVADKIVHGGERDEKN-LYIEPTILLDPPLDSSIMTEE 336
>gnl|CDD|219867 pfam08495, FIST, FIST N domain. The FIST N domain is a novel
sensory domain, which is present in signal transduction
proteins from Bacteria, Archaea and Eukarya. Chromosomal
proximity of FIST-encoding genes to those coding for
proteins involved in amino acid metabolism and transport
suggest that FIST domains bind small ligands, such as
amino acids.
Length = 196
Score = 25.3 bits (56), Expect = 3.7
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 21 QGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAG-----------GGRAGDKGFYV 69
G AG + + L + +L+ G GG AGD +
Sbjct: 79 DGAEAGRELVEALPSDGNRFALVLSDGLSGNEEELLEGLDSAGPDVPIFGGSAGDGLRFE 138
Query: 70 QPTVFAN 76
Q VF N
Sbjct: 139 QTFVFDN 145
>gnl|CDD|235045 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.
Length = 310
Score = 25.3 bits (56), Expect = 4.4
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 59 GGRAGDKGFYVQPTVFANVR 78
GG GD Y++PT ANVR
Sbjct: 216 GGIGGD---YIKPTALANVR 232
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. This family
contains hydrolases that break carbon-nitrogen bonds.
The family includes: Nitrilase EC:3.5.5.1, Aliphatic
amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12,
Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related
proteins generally have a conserved E-K-C catalytic
triad, and are multimeric alpha-beta-beta-alpha
sandwich proteins.
Length = 172
Score = 25.3 bits (56), Expect = 4.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 35 KEQMDKILEFIESGKSQGAQLVA 57
+ + K+LE IE QGA LV
Sbjct: 15 EANLQKLLELIEEAARQGADLVV 37
>gnl|CDD|234096 TIGR03031, cas_csx12, CRISPR-associated protein Cas9/Csx12, subtype
II-B/NMENI. Members of this family of CRISPR-associated
(cas) protein are found, so far, in CRISPR/cas loci in
Wolinella succinogenes DSM 1740, Legionella pneumophila
str. Paris, and Francisella tularensis, where the last
probably is an example of a degenerate CRISPR locus,
having neither repeats nor a functional Cas1. The
characteristic repeat length is 37 base pairs and period
is about 72. One region of this large protein shows
sequence similarity to pfam01844, HNH endonuclease
[Mobile and extrachromosomal element functions, Other].
Length = 802
Score = 25.3 bits (55), Expect = 5.4
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 31 RKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
+KIDK ++ K L F+ GK L+ +V + RE+
Sbjct: 409 KKIDKFKLKKQLSFLGQGKKLPENLIETLKEMETNFNSSLVSVLIQIASYYNKERED 465
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes.
This superfamily (also known as the C-N hydrolase
superfamily) contains hydrolases that break
carbon-nitrogen bonds; it includes nitrilases, cyanide
dihydratases, aliphatic amidases, N-terminal amidases,
beta-ureidopropionases, biotinidases, pantotheinase,
N-carbamyl-D-amino acid amidohydrolases, the
glutaminase domain of glutamine-dependent NAD+
synthetase, apolipoprotein N-acyltransferases, and
N-carbamoylputrescine amidohydrolases, among others.
These enzymes depend on a Glu-Lys-Cys catalytic triad,
and work through a thiol acylenzyme intermediate.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer. These oligomers include dimers, tetramers,
hexamers, octamers, tetradecamers, octadecamers, as
well as variable length helical arrangements and
homo-oligomeric spirals. These proteins have roles in
vitamin and co-enzyme metabolism, in detoxifying small
molecules, in the synthesis of signaling molecules, and
in the post-translational modification of proteins.
They are used industrially, as biocatalysts in the fine
chemical and pharmaceutical industry, in cyanide
remediation, and in the treatment of toxic effluent.
This superfamily has been classified previously in the
literature, based on global and structure-based
sequence analysis, into thirteen different enzyme
classes (referred to as 1-13). This hierarchy includes
those thirteen classes and a few additional
subfamilies. A putative distant relative, the
plasmid-borne TraB family, has not been included in the
hierarchy.
Length = 253
Score = 25.0 bits (55), Expect = 5.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 34 DKEQ-MDKILEFIESGKSQGAQLV 56
D E + K L I+ QGA L+
Sbjct: 12 DVEANLAKALRLIKEAAEQGADLI 35
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 25.2 bits (56), Expect = 5.7
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVF 74
ID E + IE K + L + G +V PT F
Sbjct: 873 IDAEAKANLDAHIERMKREARLLAQLPLPAGTENGHFVAPTAF 915
>gnl|CDD|226200 COG3675, COG3675, Predicted lipase [Lipid metabolism].
Length = 332
Score = 24.9 bits (54), Expect = 6.3
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVA-GGGRAG 63
A F LD Q R G + ++Q +LE I G G + GG
Sbjct: 131 IEAGFYHLLDNEGMHRQPSRNQDTLGMTVIEKQEQTLLEEIPQGYRIGITGHSSGGAIIC 190
Query: 64 DKGFYVQ-------PTVFA 75
+G Y + V
Sbjct: 191 VRGTYFERKYPRVDNLVVT 209
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional.
Length = 540
Score = 24.7 bits (55), Expect = 6.3
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 38 MDKILEFIESGKSQGAQLVA 57
KIL GA L+
Sbjct: 19 AAKILAAAAEAADAGADLLL 38
>gnl|CDD|130764 TIGR01703, hybrid_clust, hydroxylamine reductase. This model
represents a family of proteins containing an unusual
4Fe-2S-2O hydrid cluster. Earlier reports had proposed a
6Fe-6S prismane cluster. This subfamily is heterogeneous
with respect to the presence or absence of a region of
about 100 amino acids not far from the N-terminus of the
protein. Members have been described as monomeric. The
general function is unknown, although members from E.
coli and several other species have hydroxylamine
reductase activity. Members are found in various
bacteria, in Archaea, and in several parasitic
eukaryotes: Giardia intestinalis, Trichomonas vaginalis,
and Entamoeba histolytica [Cellular processes,
Detoxification, Energy metabolism, Amino acids and
amines].
Length = 522
Score = 24.8 bits (54), Expect = 6.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 7 AVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAG-GGRAGDK 65
F K+L++ +T G TI DKI+E ++ GK + LV G G ++
Sbjct: 334 PGFPKELEEGT-ITTGFGHHTILALA------DKIVELVKEGKIRHFFLVGGCDGPNPER 386
Query: 66 GFY 68
+Y
Sbjct: 387 NYY 389
>gnl|CDD|222523 pfam14069, SpoVIF, Stage VI sporulation protein F. The
sporulation-specific SpoVIF (YjcC) protein of Bacillus
subtilis is essential for the development of
heat-resistant spores. Its expression is governed by
SigK.
Length = 79
Score = 24.2 bits (53), Expect = 6.9
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 24 RAGTIWGRKIDKEQMDKILEFIESGKSQG 52
+ + + + KE+ DKI++ I +
Sbjct: 39 QVAQMANKPVSKEKEDKIVQAIVNNGMPL 67
>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of
this protein family are 6-phospho 3-hexuloisomerase
(PHI), or the PHI domain of a fusion protein. This
enzyme is part of the ribulose monophosphate (RuMP)
pathway, which in one direction removes the toxic
metabolite formaldehyde by assimilation into
fructose-6-phosphate. In the other direction, in
species lacking a complete pentose phosphate pathway,
the RuMP pathway yields ribulose-5-phosphate, necessary
for nucleotide biosynthesis, at the cost of also
yielding formaldehyde. These latter species tend
usually have a formaldehyde-activating enzyme to attach
formaldehyde to the C1 carrier tetrahydromethanopterin.
Length = 179
Score = 24.6 bits (54), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 32 KIDKEQMDKILEFIESGKSQGAQLVAGGGRAG 63
+ID+E++DK+ + I K VAG GR+G
Sbjct: 14 RIDEEELDKLADKIIKAK---RIFVAGAGRSG 42
>gnl|CDD|219027 pfam06434, Aconitase_2_N, Aconitate hydratase 2 N-terminus. This
family represents the N-terminal region of several
bacterial Aconitate hydratase 2 proteins and is found
in conjunction with pfam00330.
Length = 204
Score = 24.4 bits (54), Expect = 9.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 35 KEQMDKILEFIESGKSQGAQLVAGGG 60
K + ILE I K +G L G
Sbjct: 36 KSRRPGILEQIAELKKKGHPLAYVGD 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,415,899
Number of extensions: 350706
Number of successful extensions: 710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 167
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)