RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5845
(87 letters)
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 108 bits (272), Expect = 1e-29
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
+ T G ++D+ Q KIL +I +GK +GA+L+ GGG A D+G+++QPTVF +V+D M
Sbjct: 334 PFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGM 393
Query: 82 KIAREE 87
IA+EE
Sbjct: 394 TIAKEE 399
Score = 43.3 bits (103), Expect = 1e-06
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AAVFTKDLDK NY++Q L+AGT+W
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVW 452
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 108 bits (271), Expect = 1e-29
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
L T G + + + K++E+ + G +GA LV GG + GF+ QPTVF +V D M
Sbjct: 354 PLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHM 413
Query: 82 KIAREE 87
IA+EE
Sbjct: 414 YIAKEE 419
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
++ VFT+D++K YV+ L+AGT++
Sbjct: 450 ASGVFTRDINKALYVSDKLQAGTVF 474
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 108 bits (271), Expect = 2e-29
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
L G G +IDKEQ +KIL+ IESGK +GA+L GGG G+KG+++QPTVF++V DDM
Sbjct: 335 PLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDM 394
Query: 82 KIAREE 87
+IA+EE
Sbjct: 395 RIAKEE 400
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A +FT D+DK V+ L++GT+W
Sbjct: 430 AGIFTNDIDKAITVSSALQSGTVW 453
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 102 bits (257), Expect = 1e-27
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDD 80
L T G I + +K+ ++ +G + GA+L+ GG R G + G Y PTVFA V D
Sbjct: 336 PLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPD 395
Query: 81 MKIAREE 87
M IAREE
Sbjct: 396 MSIAREE 402
Score = 41.8 bits (99), Expect = 5e-06
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
SA+V++ +L+ + +RAG W
Sbjct: 431 SASVWSTNLETALQTIRRIRAGRCW 455
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 102 bits (257), Expect = 1e-27
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANV 77
T +G + M+ +L +IESGK+Q A+L+ GG R D KG YV PTVF +
Sbjct: 318 PQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDC 377
Query: 78 RDDMKIAREE 87
RDDM I REE
Sbjct: 378 RDDMTIVREE 387
Score = 42.1 bits (100), Expect = 3e-06
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A V T+DL + + L AG W
Sbjct: 417 AGVVTQDLARAHRAIHRLEAGICW 440
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 101 bits (255), Expect = 3e-27
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG---RAGDKGFYVQPTVFANVR 78
L T G + K Q +K+L +IE GK++GA L+ GGG +G YVQPTVFA+V
Sbjct: 324 PLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVT 383
Query: 79 DDMKIAREE 87
DDM IAREE
Sbjct: 384 DDMTIAREE 392
Score = 42.2 bits (100), Expect = 3e-06
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
VFT DL + + V GL AGT+W
Sbjct: 422 GGVFTADLARAHRVVDGLEAGTLW 445
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 101 bits (254), Expect = 3e-27
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRD 79
L G G + + Q +KIL+F+ + KS+GA ++ GG R KGF+++PT+ +V
Sbjct: 326 PLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTT 385
Query: 80 DMKIAREE 87
+M+I REE
Sbjct: 386 NMQIWREE 393
Score = 43.3 bits (103), Expect = 1e-06
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AAV + DL++ VT+ +AG +W
Sbjct: 423 AAVISNDLERCERVTKAFKAGIVW 446
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 101 bits (253), Expect = 5e-27
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFA 75
L T G I K Q+DK+L F+ K +GA+++ GG G+++ P V
Sbjct: 329 PLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLD 388
Query: 76 NVRDDMKIAREE 87
N RDDM +EE
Sbjct: 389 NCRDDMTCVKEE 400
Score = 42.2 bits (100), Expect = 3e-06
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
+ VFT+D+ + + V L AGT +
Sbjct: 430 SGVFTRDISRAHRVAANLEAGTCY 453
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 100 bits (251), Expect = 1e-26
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANV 77
G A T G I E +KI +++ K++GA + GG R G + +PTV N
Sbjct: 345 GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNC 404
Query: 78 RDDMKIAREE 87
M+I +EE
Sbjct: 405 DTSMRIVQEE 414
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
AVF+KD+ K V L+ GT+W
Sbjct: 444 GAVFSKDIGKAQRVANKLKLGTVW 467
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 99.5 bits (249), Expect = 2e-26
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDD 80
T G ++++ + +E K+ G +++ GG + G+Y PT+ A D
Sbjct: 333 PDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQD 392
Query: 81 MKIAREE 87
I ++E
Sbjct: 393 DAIVQKE 399
Score = 40.2 bits (95), Expect = 2e-05
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
++V+TKD+ + + V+ L+ G W
Sbjct: 429 SSVWTKDVGRAHRVSARLQYGCTW 452
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 98.0 bits (245), Expect = 5e-26
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDD 80
G I + Q D++ F+E Q ++ GG D+GF+ QPTV A +
Sbjct: 335 DDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQE 394
Query: 81 MKIAREE 87
+I R E
Sbjct: 395 DEIVRRE 401
Score = 40.2 bits (95), Expect = 1e-05
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
++V+TKD+ K L+ G W
Sbjct: 431 SSVWTKDISKAMRAASRLQYGCTW 454
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 98.0 bits (245), Expect = 7e-26
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRD 79
G I ++Q ++ +I G +GA+LV GGGR D GF++QPTVFA+V +
Sbjct: 320 PSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDN 379
Query: 80 DMKIAREE 87
M IA+EE
Sbjct: 380 KMTIAQEE 387
Score = 37.1 bits (87), Expect = 2e-04
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ +V+T D+ K ++Q +R GT
Sbjct: 416 AGSVWTTDVPKGIKISQQIRTGTYG 440
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 94.1 bits (235), Expect = 1e-24
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREE 87
I K+Q D++ +I G +GA+L GG +KG++ +PT+F NV + M IA+EE
Sbjct: 325 ISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEE 382
Score = 37.1 bits (87), Expect = 2e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ V KD + + V + + AGT+
Sbjct: 411 AGYVIGKDKETLHKVARSIEAGTVE 435
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 94.2 bits (235), Expect = 1e-24
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREE 87
+ KEQ DKI + I+SG +GA LV GG ++G+YV+PTVFA+V+ M+I REE
Sbjct: 346 VSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREE 403
Score = 37.2 bits (87), Expect = 2e-04
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ + ++D K + +R+G +
Sbjct: 432 TNYIQSQDRSKCRRIAAQVRSGMVE 456
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 93.1 bits (232), Expect = 4e-24
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID++ +KI+ +IE GK +G +L+ GG GF++QPT+ A++ + I +EE
Sbjct: 364 IDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEE 417
Score = 37.6 bits (88), Expect = 1e-04
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ AV T++ + G ++
Sbjct: 446 TGAVITRNRAHIEQAKREFHVGNLY 470
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 91.5 bits (228), Expect = 1e-23
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--------DKGFYVQPTV 73
L T G I E + ++L ++E+GK +GA+L+ GG RA +G Y+ PTV
Sbjct: 337 PLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTV 396
Query: 74 FANVRDDMKIAREE 87
F + MKIA+EE
Sbjct: 397 FVG-ENHMKIAQEE 409
Score = 41.0 bits (97), Expect = 8e-06
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
A VFT+DL++ + + L AG ++
Sbjct: 439 AYVFTRDLERAHRLALELEAGMVY 462
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 90.3 bits (225), Expect = 4e-23
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
+ EQ K+L +IE GK++G LV GG R +G+++ PTVF V +IA+EE
Sbjct: 364 VSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEE 417
Score = 35.2 bits (82), Expect = 8e-04
Identities = 2/25 (8%), Positives = 11/25 (44%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ V+++ + + + G ++
Sbjct: 446 TGGVYSRKREHLEWARREFHVGNLY 470
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 84.2 bits (209), Expect = 5e-21
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
GT+ G I+ Q+ + E IE K +GA + G +G V P VF++V DM
Sbjct: 326 PSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI---EGRLVHPHVFSDVTSDM 382
Query: 82 KIAREE 87
+IAREE
Sbjct: 383 EIAREE 388
Score = 34.1 bits (79), Expect = 0.002
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
SAAV++KD+D+ + +G +
Sbjct: 417 SAAVWSKDIDRAAQFALQIDSGMVH 441
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 77.2 bits (191), Expect = 1e-18
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
++G K+ + L +E K +G +V GG G YV+PT+ + D
Sbjct: 335 PWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDA 394
Query: 82 KIAREE 87
IA E
Sbjct: 395 SIAHTE 400
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 74.5 bits (184), Expect = 1e-17
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I + +L+ E +GAQ + + D + P + +V + EE
Sbjct: 327 ISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGIL-DVSAVAERPDEE 380
Score = 30.2 bits (69), Expect = 0.051
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+A + + ++ RAG +
Sbjct: 409 AAGLLSDSRERFEQFLVESRAGIVN 433
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 73.4 bits (181), Expect = 3e-17
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID++ I I+ GA L++G R +G + PT+ +V M++A EE
Sbjct: 335 IDEKSAAFIQGLIDDALENGATLLSGNKR---QGNLLSPTLLDDVTPAMRVAWEE 386
Score = 29.8 bits (68), Expect = 0.062
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
A++FTKD D+ + + L GT+
Sbjct: 415 QASIFTKDTDRAINIGKHLEVGTVH 439
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 72.7 bits (179), Expect = 6e-17
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRA-----GDKGFYVQPTVF--ANVRDDMKIAR 85
+ +EQ + +L I + + + + V P +F + + +
Sbjct: 342 VSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHD 401
Query: 86 EE 87
E
Sbjct: 402 VE 403
Score = 31.9 bits (73), Expect = 0.012
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
A++++ D + L
Sbjct: 440 VASIYSNDDAHLGRLALELADSHGR 464
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 71.8 bits (177), Expect = 1e-16
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANVR 78
G I +D+++ IE +G +++AGG R G YVQPT A+
Sbjct: 329 PRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLG--PTYVQPTFVEAPADRV 386
Query: 79 DDMKIAREE 87
DM + + E
Sbjct: 387 KDMVLYKRE 395
Score = 31.4 bits (72), Expect = 0.019
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW---GRKIDKEQM 38
AAVF +D+ K + L G I+ +
Sbjct: 425 AAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYY 460
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 70.6 bits (174), Expect = 3e-16
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
I+ ++++ + + +GA++ GG KG+Y PT+ +VR +M I EE
Sbjct: 329 INAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEE 383
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 70.1 bits (172), Expect = 5e-16
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
D + M I E+ E GK +G ++ +G++V T+ ++ + +IA+EE
Sbjct: 858 ADDKAMKSIKEYAEIGKREGH-VLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEE 911
Score = 26.5 bits (59), Expect = 1.1
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ +F++ + + R G ++
Sbjct: 940 TGGIFSRSPEHLAKARREFRVGNLY 964
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 69.1 bits (170), Expect = 1e-15
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
L T G I E + + + +E +G +L+ GG R PT+ V D
Sbjct: 307 PLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKR---DKALFYPTIL-EVDRDN 362
Query: 82 KIAREE 87
+ + E
Sbjct: 363 ILCKTE 368
Score = 30.6 bits (70), Expect = 0.033
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIW 29
+A+FT D++K+ + L G +
Sbjct: 397 SAIFTNDINKSLKFAENLEFGGVV 420
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 68.8 bits (169), Expect = 1e-15
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
T+ G I++ Q++K LE IE K+ G +L G R G + P VF ++
Sbjct: 319 QTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR---VGNVLTPYVFVGADNNS 375
Query: 82 KIAREE 87
KIA+ E
Sbjct: 376 KIAQTE 381
Score = 24.1 bits (53), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAG 26
S+AVFT DL+K + +G
Sbjct: 410 SSAVFTSDLEKGEKFALQIDSG 431
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 67.9 bits (167), Expect = 2e-15
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID + D + I +GA + R +G + P +F V DM++A EE
Sbjct: 326 IDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMRLAWEE 377
Score = 26.3 bits (59), Expect = 1.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTI 28
A++FT D + + + L GT+
Sbjct: 406 QASIFTNDFPRAFGIAEQLEVGTV 429
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 65.6 bits (161), Expect = 2e-14
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 6 AAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDK 65
F + + K V G GT G I+++ ++K+ + + S+GA +V GG R
Sbjct: 309 VKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLG 368
Query: 66 GFYVQPTVFANVRDDMKIAREE 87
+ +PT+ NV DM EE
Sbjct: 369 KNFFEPTLLCNVTQDMLCTHEE 390
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 65.2 bits (160), Expect = 2e-14
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
G +G G I++ + K+ I ++GA L+ GG R + +PTV V+ DM
Sbjct: 323 GTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDM 382
Query: 82 KIAREE 87
+A+EE
Sbjct: 383 DVAKEE 388
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 65.2 bits (160), Expect = 3e-14
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
GL G G ID++ + K+ E I +GA++V GG G + QPT+ +V +
Sbjct: 320 GLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANA 379
Query: 82 KIAREE 87
K+++EE
Sbjct: 380 KVSKEE 385
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 64.1 bits (157), Expect = 6e-14
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
G G + G I+++ + K+ IE S+GA+L+ GG G G + +P + V DM
Sbjct: 343 GTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDM 400
Query: 82 KIAREE 87
+A+EE
Sbjct: 401 LVAKEE 406
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 63.7 bits (156), Expect = 8e-14
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANV 77
+ A + G K ++ ++D I + QGA + GG + G + +PTV +V
Sbjct: 323 PMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDV 382
Query: 78 RDDMKIAREE 87
+ D + EE
Sbjct: 383 KQDNIVVHEE 392
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 63.7 bits (156), Expect = 9e-14
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDD 80
G+ G G I+K+ DK+ ++ +GA LVAG A G + PTV V +
Sbjct: 322 GMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDRE 381
Query: 81 MKIAREE 87
M +EE
Sbjct: 382 MCCYQEE 388
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 63.4 bits (155), Expect = 1e-13
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVFANV 77
+ GL G G I ++ + L +IE G +GA+LV G D G++V PT+F NV
Sbjct: 312 IGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNV 371
Query: 78 RDDMKIAREE 87
+M I ++E
Sbjct: 372 TTEMTIWKDE 381
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 61.4 bits (150), Expect = 6e-13
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
L G + D++ + +++ ++GA+L+ GG + +G Y TV A+V DM
Sbjct: 300 PLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDM 359
Query: 82 KIAREE 87
R+E
Sbjct: 360 TAFRQE 365
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 61.0 bits (149), Expect = 7e-13
Identities = 12/66 (18%), Positives = 27/66 (40%)
Query: 22 GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
L A T ++ +K+ ++ GA++ KG + +PT+ ++ D
Sbjct: 297 PLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDN 356
Query: 82 KIAREE 87
+ +E
Sbjct: 357 PVFDKE 362
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 58.8 bits (143), Expect = 4e-12
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG----GRAGDKGFYVQPTVF 74
+ G + KE +I I+SG QGA+LV G + + G ++ +F
Sbjct: 334 IGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLF 393
Query: 75 ANVRDDMKIAREE 87
+V DM I + E
Sbjct: 394 DDVTPDMDIYKTE 406
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 55.7 bits (135), Expect = 6e-11
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 33 IDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID + +I +++E +S ++AGG G+YV+P + + I +EE
Sbjct: 392 IDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEE 447
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 50.1 bits (120), Expect = 5e-09
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID E ++ I K++ +L G +G +V P +F + EE
Sbjct: 837 IDVEAKQRLDAHIARMKTEA-RLHFAG--PAPEGCFVAPHIFELT--EAGQLTEE 886
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 43.8 bits (104), Expect = 9e-07
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 10/70 (14%)
Query: 21 QGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANV 77
+ T+ I ++ + G G + V +F +
Sbjct: 315 RQQSPSTLLTPGIRDSYQSQV---VSRGSDDGIDVTFSQAE----SPCVASALFVTSSEN 367
Query: 78 RDDMKIAREE 87
EE
Sbjct: 368 WRKHPAWEEE 377
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 43.1 bits (102), Expect = 2e-06
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 33 IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
ID KI+ + ++ A G + + V D A E+
Sbjct: 288 IDGALNAKIVGQPATAIAEMA-----GVKVPADTKVLIGEGLGKVSYDDAFAHEK 337
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 41.8 bits (99), Expect = 4e-06
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
+GR I +++ IE K VA GG Y+ PT+ +V + +EE
Sbjct: 298 YGRIISARHFQRVMGLIEGQK------VAYGGTGDAATRYIAPTILTDVDPQSPVMQEE 350
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 34.3 bits (79), Expect = 0.002
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
G+ + + Q+ +++ +E+ + Q V G +A + TV V + + EE
Sbjct: 304 TGKLVTERQVQRLVSLLEATQGQ----VLVGSQADVSKRALSATVVDGVEWNDPLMSEE 358
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.003
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 7 AVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFI--ESGK--------SQGAQLV 56
AV +L ++NY + G + +E + ++E + +G + Q V
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRV-AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 57 AGGGRAG-DKGFYVQPTVFANVRDDMKI 83
A G D NV + +K+
Sbjct: 1855 AAGDLRALDT--------VTNVLNFIKL 1874
Score = 30.0 bits (67), Expect = 0.069
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 19/69 (27%)
Query: 2 HWTSAAVFTKDLDKT---------NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG 52
H AA ++ D T NY + A + R DK+ + + G
Sbjct: 102 H-ALAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSALFRAVGEGN--- 153
Query: 53 AQLVA--GG 59
AQLVA GG
Sbjct: 154 AQLVAIFGG 162
Score = 28.1 bits (62), Expect = 0.29
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 51 QGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
QG+Q G G Y +V +
Sbjct: 1624 QGSQEQ-GMGMD----LYKTSKAAQDVWNRAD 1650
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 31.6 bits (72), Expect = 0.017
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 9/70 (12%)
Query: 21 QGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD 80
+ T+ I K D F + + + G P +F
Sbjct: 349 AKVAPQTMLTDGIAKAYRDGQARFATRN---AVKPLLATESS---GRDASPNLFETTGAQ 402
Query: 81 M---KIAREE 87
EE
Sbjct: 403 FLADHALGEE 412
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 27.3 bits (61), Expect = 0.55
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 14 DKTNYVTQGLRAGT--IWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQP 71
D++ GLR G + R+ ++ ++++FI+ G + G ++ + + D +
Sbjct: 401 DRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQD----FKS 456
Query: 72 TVFANVRDDMKIAR 85
+ + ++A
Sbjct: 457 FLLKDSETSQRLAN 470
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 34 DKEQMDKILEFIESGKSQGAQL----VAGGGRAG 63
+Q+D+ ++ ++ ++G + G GR G
Sbjct: 71 APDQIDRFVQIVDEANARGEAVGVHCALGFGRTG 104
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 25.9 bits (57), Expect = 1.7
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 39 DKILEFIESGKSQGAQLVA 57
KI+ ++ GA +
Sbjct: 26 AKIVAAAQAAHDAGAHFLI 44
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.79A {Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 25.7 bits (57), Expect = 2.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 39 DKILEFIESGKSQGAQLVAG 58
IL+ IE K+ +++
Sbjct: 25 KNILDAIEEAKNANVEILCL 44
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 25.7 bits (57), Expect = 2.1
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 14 DKTNYVTQGLRAGT--IWGRKIDKEQMDKILEFIESGKSQGAQLVAG-GGRAGDKGFYVQ 70
DK+ GLR GT + R + ++ K+ FI G Q+ G RA K F +
Sbjct: 391 DKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEK 450
Query: 71 PTVFANVRDDMKIAREE 87
+ ++ R+E
Sbjct: 451 LAGDEKHQRAVRALRQE 467
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 25.8 bits (57), Expect = 2.1
Identities = 1/25 (4%), Positives = 7/25 (28%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ + ++D + +
Sbjct: 374 TLIIHSEDKEIIREFALKKPVSRLL 398
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 25.8 bits (57), Expect = 2.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 39 DKILEFIESGKSQGAQLVA 57
+ IL + QGA LVA
Sbjct: 24 EAILRWTRHSAEQGAHLVA 42
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase;
1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 25.2 bits (56), Expect = 2.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 27 TIWGRKIDKEQMDKI 41
IWG + D E + I
Sbjct: 27 RIWGTEFDTEILKSI 41
>3sdb_A Glutamine-dependent NAD(+) synthetase;
glutamine-amidotransferase, glutaminase,
glutamine-dependent synthetase, ligase; 2.00A
{Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 25.1 bits (55), Expect = 3.2
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 39 DKILEFIESGKSQGAQLVAG 58
+L+ + GA L
Sbjct: 32 ASVLDMARACHDDGAALAVF 51
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 24.8 bits (54), Expect = 4.1
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 34 DKEQM-DKILEFIESGKSQGAQLV 56
+E + +K+ I++ G +V
Sbjct: 93 QREAIWNKVKTMIKAAAEAGCNIV 116
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor
binding domains, glyco hydrolase, growth factor,
secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Length = 508
Score = 24.9 bits (54), Expect = 4.2
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 31 RKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
R D + + + + + +VAG G + + + I ++
Sbjct: 268 RSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEA---LMIPAKD 321
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 24.6 bits (54), Expect = 5.3
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 34 DKEQM-DKILEFIESGKSQGAQLV 56
+EQ+ ++L+ + S+GA +
Sbjct: 19 TREQVVVRLLDMLTKAASRGANFI 42
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 24.1 bits (53), Expect = 6.8
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 34 DKEQM-DKILEFIESGKSQGAQLV 56
+ ++ K + I+ QGAQLV
Sbjct: 15 EPDKNYSKAEKLIKEASKQGAQLV 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 24.2 bits (52), Expect = 6.9
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 32 KIDKEQMDKILEFIES 47
+D + KI E +++
Sbjct: 233 HLDNLKRKKIEETVKT 248
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 23.8 bits (52), Expect = 8.5
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 31 RKIDKEQMDKILEFIESGKS 50
+ I + +D ++ E
Sbjct: 4 KVIAQAHIDHFTKWFERADK 23
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 24.0 bits (53), Expect = 8.6
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD 64
G +I +E+ ++I + + + + +
Sbjct: 113 GIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKR 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,325,519
Number of extensions: 66355
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 101
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)