RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5845
(87 letters)
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 79.7 bits (196), Expect = 7e-20
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15 KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
K+ V + T G ++D+ Q KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 321 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 380
Query: 75 ANVRDDMKIAREE 87
+V+D M IA+EE
Sbjct: 381 GDVQDGMTIAKEE 393
Score = 32.7 bits (74), Expect = 0.003
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+AAVFTKDLDK NY++Q L+AGT+W
Sbjct: 422 AAAVFTKDLDKANYLSQALQAGTVW 446
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 75.8 bits (186), Expect = 1e-18
Identities = 38/70 (54%), Positives = 52/70 (74%)
Query: 18 YVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANV 77
+ L G G +IDKEQ +KIL+ IESGK +GA+L GGG G+KG+++QPTVF++V
Sbjct: 324 VLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDV 383
Query: 78 RDDMKIAREE 87
DDM+IA+EE
Sbjct: 384 TDDMRIAKEE 393
Score = 31.9 bits (72), Expect = 0.006
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
SA +FT D+DK V+ L++GT+W
Sbjct: 422 SAGIFTNDIDKAITVSSALQSGTVW 446
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 67.2 bits (163), Expect = 2e-15
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
G + EQ K+L +IE GK++G LV GG R +G+++ PTVF V +
Sbjct: 354 AEENPDLGPVVSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKAR 412
Query: 83 IAREE 87
IA+EE
Sbjct: 413 IAQEE 417
Score = 32.2 bits (72), Expect = 0.004
Identities = 2/25 (8%), Positives = 11/25 (44%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ V+++ + + + G ++
Sbjct: 446 TGGVYSRKREHLEWARREFHVGNLY 470
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 66.7 bits (162), Expect = 3e-15
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 27 TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFANVRDD 80
T G I K Q+DK+L F+ K +GA+++ GG G+++ P V N RDD
Sbjct: 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDD 393
Query: 81 MKIAREE 87
M +EE
Sbjct: 394 MTCVKEE 400
Score = 31.6 bits (71), Expect = 0.006
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
++ VFT+D+ + + V L AGT +
Sbjct: 429 ASGVFTRDISRAHRVAANLEAGTCY 453
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 40.6 bits (94), Expect = 5e-06
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 15 KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTV 73
T T G ++++ + +E K+ G V GG + G+Y PT+
Sbjct: 305 ATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTL 364
Query: 74 FANVRDDMKIAREE 87
A D I ++E
Sbjct: 365 LAGALQDDAIVQKE 378
Score = 31.7 bits (71), Expect = 0.006
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+++V+TKD+ + + V+ L+ G W
Sbjct: 407 ASSVWTKDVGRAHRVSARLQYGCTW 431
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 35.7 bits (81), Expect = 2e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 56 VAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
VA GG Y+ PT+ +V + +EE
Sbjct: 301 VAHGGTWDQSSRYIAPTILVDVDPQSPVMQEE 332
Score = 30.7 bits (68), Expect = 0.014
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
+ VF+ + + +G +
Sbjct: 361 ALYVFSNNEKVIKKMIAETSSGGVT 385
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 32.2 bits (72), Expect = 0.005
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
A++FT D + + + L GT+
Sbjct: 405 QASIFTNDFPRAFGIAEQLEVGTVH 429
Score = 31.4 bits (70), Expect = 0.007
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
ID + D + I +GA + R +G + P +F V DM++A E
Sbjct: 321 ITPLIDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMRLAWE 375
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 31.9 bits (71), Expect = 0.005
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
AAVF +D+ K + L G I+
Sbjct: 422 DAAVFGRDVVKIRRAVRLLEVGAIY 446
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 28.5 bits (62), Expect = 0.076
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 5 SAAVFTKDLDKTNYVTQGLRAGTIW 29
S ++ T++ + A ++
Sbjct: 338 SESILTENYSNAKKFVSEIDAAAVY 362
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 27.0 bits (58), Expect = 0.29
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 25 AGTIWGRKIDKEQMDKILEFIESGKSQGAQLV 56
G I + ++ + ++L+ + S+GA +
Sbjct: 11 QGPIARAETREQVVVRLLDMLTKAASRGANFI 42
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 271
Score = 25.1 bits (53), Expect = 1.4
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 34 DKEQ-MDKILEFIESGKSQGAQLV 56
D E+ IE + ++V
Sbjct: 18 DLEKNFQAAKNMIERAGEKKCEMV 41
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 174
Score = 24.9 bits (53), Expect = 1.6
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGK 49
G + G K+ + +++ + GK
Sbjct: 151 GVVEGSGSPKKFIPELVRLYQQGK 174
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 24.8 bits (54), Expect = 1.6
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 29 WGRKIDKEQMDKILEFIESGK 49
W + D + L +++G
Sbjct: 221 WAPRFDYILSQQALVAVDNGA 241
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 24.4 bits (53), Expect = 1.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 32 KIDKEQMDKILEFIESGKSQGAQLVA 57
K+ + Q+ K+L+F+ +G L+A
Sbjct: 57 KVKEHQVRKLLDFLSMFTMKGVPLIA 82
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 24.2 bits (51), Expect = 2.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 35 KEQMDKILEFIESGKSQGAQLV 56
+ K + I+ +GA+LV
Sbjct: 17 DKNYSKAEKLIKEASKEGAKLV 38
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 24.2 bits (51), Expect = 2.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGK 49
GT +G E + K++ S K
Sbjct: 153 GTAFGGWKSVESVPKLVSEYMSKK 176
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 24.0 bits (52), Expect = 3.3
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 1 MHWTSAAVFTKDLDKTNYVTQGLRAG 26
M A L + V L G
Sbjct: 174 MQEALAKTLDDSLSVADLVALTLETG 199
Score = 22.8 bits (49), Expect = 8.7
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 29 WGRKIDKEQMDKILEFIESGKSQGAQLVAG-GGRAGDKGFYV 69
+ DK+++ ++SG + ++AG GRA + +Y
Sbjct: 369 FAHNQVLALADKVIDAVKSGAIKKFVVMAGCDGRAKSRSYYT 410
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 24.0 bits (52), Expect = 3.4
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 36 EQMDKILEFIESGKSQGAQLVAG-GGRAGDKGFY 68
DK++E ++SG + ++AG GR + +Y
Sbjct: 383 ALADKVVEAVKSGAIKRFVVMAGCDGRQKSRSYY 416
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 23.3 bits (50), Expect = 4.9
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAG--GGRAGDKGFYV 69
+ + + +++ + +G QG L G + YV
Sbjct: 395 AKVNADDPLKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYV 436
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 23.1 bits (48), Expect = 5.6
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 26 GTIWGRKIDKEQMDKILEFIESGK 49
G+++G K+ + K+++ K
Sbjct: 152 GSMFGGFKGKDGVPKMVKAYLDKK 175
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl
transferase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 22.5 bits (48), Expect = 6.1
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 33 IDKEQMDKILEFIESGKSQ 51
+ + I IE G+S
Sbjct: 70 LGDKVKSIIEGIIEDGESS 88
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 23.3 bits (50), Expect = 6.6
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 30 GRKIDKEQMDKILEFIESGKSQGAQLVAG--GGRAGDKGFYV 69
+ + + + + I G+ G L+ G + ++
Sbjct: 440 ATQNAQNPIRVLNQAILDGELAGVALICGCNNLKGFQDNSHL 481
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 23.0 bits (49), Expect = 6.8
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 32 KIDKEQMDKILEFIES 47
+D E K++ I+
Sbjct: 205 DMDAETAPKLMRLIDM 220
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 22.8 bits (49), Expect = 7.2
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 29 WGRKIDKEQMDKILEFIES 47
+ + E++ +IL+ I++
Sbjct: 105 LEGRFEDEELQQILDDIQT 123
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 22.0 bits (47), Expect = 8.9
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 19 VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ 51
+ G A + G + + +KI EF+ +GK +
Sbjct: 44 IKSGAEAKKLPG--VGTKIAEKIDEFLATGKLR 74
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 72
Score = 22.0 bits (47), Expect = 9.4
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 17 NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGK 49
+ Q + G + KI EQ+ ++L+ + K
Sbjct: 41 LQLIQLAQMGRV-RSKITDEQLKELLKRVAGKK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,170
Number of extensions: 11413
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 40
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)