RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5847
(170 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 154 bits (392), Expect = 1e-45
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IGRHITREIQADKYT 59
+ +EI +V+GD PTYD +Q + L VIKETLRL+P P+ + R +T++ Y
Sbjct: 298 LREEIDEVIGDK--RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYL 355
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKY 119
IP G V +Y +HRDP + NP F P+RFL R A+LPF +GPRNC+G +
Sbjct: 356 IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERL 415
Query: 120 GMLQMKTTLSTLLRRYRVLP 139
++MK L+TLL+ + V
Sbjct: 416 ARMEMKLFLATLLQNFEVEL 435
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 114 bits (286), Expect = 1e-30
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 9 LGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAA 68
L P+ + + LL V++ETLRLYP P+ R T +++ Y IP G V
Sbjct: 263 LLRHPDQLAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLL 322
Query: 69 FIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 128
I +RDP + +P F P+RF NA+LPF GP C+G+ L++K L
Sbjct: 323 SIGAANRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALARLELKVAL 373
Query: 129 STLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+ LLRR+ +L E TL G + + R
Sbjct: 374 AELLRRFPLL-----LLAEPPPLVRRPTLVPRGGERLPVRRR 410
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 102 bits (256), Expect = 4e-26
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTI 60
V E+ +V G + P+ D + +L LL VI E+LRLYP A ++ R +I+ I
Sbjct: 353 VRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHI 409
Query: 61 PIGATVAAFIYQIHRDPRHW-SNPHCFQPDRFLPSEISRRNPNA--YLPFSSGPRNCVGS 117
P G ++ + IH W + + F PDRF R ++PF++GPRNC+G
Sbjct: 410 PKGLSIWIPVLAIHHSEELWGKDANEFNPDRF----AGRPFAPGRHFIPFAAGPRNCIGQ 465
Query: 118 KYGMLQMKTTLSTLLRRYRVLPGDKCR----SVEDVRFEFGVTLRLL 160
+ M++ K L+ L+ ++ D R V ++ ++GV + L
Sbjct: 466 AFAMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLK 512
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 102 bits (255), Expect = 6e-26
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 13/141 (9%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IGRHITREIQADKYT 59
+E+ +VL P PTY+ I+EL LTR I E++RLYP P+ I R ++ Y
Sbjct: 315 AQEELDRVLQGRP---PTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYK 371
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNA------YLPFSSGPRN 113
+ G + +Y IHR P W F P+RF ++ PN Y+PFS GPR
Sbjct: 372 VNAGQDIMISVYNIHRSPEVWERAEEFVPERF---DLDGPVPNETNTDFRYIPFSGGPRK 428
Query: 114 CVGSKYGMLQMKTTLSTLLRR 134
CVG ++ +L+ L+ LL+R
Sbjct: 429 CVGDQFALLEAIVALAVLLQR 449
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 95.0 bits (236), Expect = 3e-23
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 18/142 (12%)
Query: 3 DEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQAD---KYT 59
+E+ VLGD PT + +++L TRVI E+LRLYP P++ I R ++ D Y
Sbjct: 430 EEVDSVLGD---RFPTIEDMKKLKYTTRVINESLRLYPQPPVL---IRRSLENDMLGGYP 483
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPN------AYLPFSSGPRN 113
I G + ++ +HR P+HW + F P+R+ + NPN +YLPF GPR
Sbjct: 484 IKRGEDIFISVWNLHRSPKHWDDAEKFNPERW---PLDGPNPNETNQNFSYLPFGGGPRK 540
Query: 114 CVGSKYGMLQMKTTLSTLLRRY 135
CVG + + + L+RR+
Sbjct: 541 CVGDMFASFENVVATAMLVRRF 562
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 87.1 bits (216), Expect = 2e-20
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IGRHITREIQ-ADKY 58
Y+EI + + Q +IKETLR P +P + R + +I +
Sbjct: 320 AYNEIKSTVNGRNKV--LLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGH 377
Query: 59 TIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSK 118
IP A + Y + R+ +++ NP F P RFL + + +A++PFS GPRNCVG +
Sbjct: 378 FIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQ 433
Query: 119 YGMLQMKTTLSTLLRRYRV--LPGDKCRSVEDVRFEFGVTLR 158
+ ++ S ++ +++ + G K E E+G+TL+
Sbjct: 434 FAQDELYLAFSNIILNFKLKSIDGKKIDETE----EYGLTLK 471
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 85.6 bits (212), Expect = 4e-20
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 2 YDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII-GRHITREIQADKYTI 60
Y EI +V GD E V T + + L L V ETLR Y P++ R + + Y I
Sbjct: 300 YREIREVCGD--ERV-TEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDI 356
Query: 61 PIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYG 120
P G +A IY + D + W NP + P+RFL + + + F +G R C GS
Sbjct: 357 PAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQA 416
Query: 121 MLQMKTTLSTLLRR--YRVLPGD 141
ML ++ L++ +R+ GD
Sbjct: 417 MLIACMAIARLVQEFEWRLREGD 439
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 77.4 bits (191), Expect = 3e-17
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 18 TYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDP 77
T ++++ L++VI ETLRL + + R +++ + YTIP G V A+ Q+H DP
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 78 RHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRV 137
+ NP F P R+ +LPF G R C G+ L++ L L YR+
Sbjct: 403 EVYPNPKEFDPSRWDNYTPK---AGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRL 459
Query: 138 LP 139
Sbjct: 460 ER 461
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 77.2 bits (190), Expect = 4e-17
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 22 IQELHLLTRVIKETLRLYPAAPI-IGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHW 80
+ +L L VIKET RL+P+ P+ + R E + + Y IP GAT+ ++ I RDP W
Sbjct: 353 LPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW 412
Query: 81 SNPHCFQPDRFLP----SEISRRNPNAYL-PFSSGPRNCVGSKYGMLQMKTTLSTLLRRY 135
+P F+PDRFLP + + + + L PF +G R C G +G+ + +TL+ +
Sbjct: 413 PDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAF 472
Query: 136 R-VLPGDKCRSVEDVRFEFGVTLR 158
L + ++ +G+TL+
Sbjct: 473 DWELADGQTPDKLNMEEAYGLTLQ 496
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 76.8 bits (189), Expect = 5e-17
Identities = 41/139 (29%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 2 YDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IGRHITREIQADKYTI 60
++E+ QV+G + V + + +L L + KE+ R +P+ P+ + R T+ + + Y I
Sbjct: 327 HEEMDQVIGRNRRLVES--DLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYI 384
Query: 61 PIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNA----YLPFSSGPRNCVG 116
P ++ I+ I RDP W NP F+P+RFL + ++ +P +PF +G R C G
Sbjct: 385 PKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAG 444
Query: 117 SKYGMLQMKTTLSTLLRRY 135
++ G++ ++ L TL+ +
Sbjct: 445 TRMGIVLVEYILGTLVHSF 463
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 76.3 bits (188), Expect = 8e-17
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 1 VYDEIVQVLGDD-PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT-REIQADKY 58
+ DE+ VLG T P +L L V+KETLRL+ A P++ H+ + + Y
Sbjct: 330 LRDELDTVLGPGNQVTEPD---THKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGY 386
Query: 59 TIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNA---YLPFSSGPRNCV 115
IP + + + + +P W NP F+P+RFL E +LPF G R+C
Sbjct: 387 DIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCP 446
Query: 116 GSKYGMLQMKTTLSTLLRRYRVLP 139
G + + L L++ + +LP
Sbjct: 447 GIILALPILGIVLGRLVQNFELLP 470
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 71.8 bits (176), Expect = 3e-15
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTI 60
V E+ V+G + V D +++L L +KETLRL+P P++ + + Y I
Sbjct: 341 VQQELADVVGLN-RRVEESD-LEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFI 398
Query: 61 PIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEIS--RRNPNAYLPFSSGPRNCVGSK 118
P + V + I RD W +P F+P RFL + + + ++PF SG R+C G +
Sbjct: 399 PKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQ 458
Query: 119 YGMLQMKTTLSTLLRRYR-VLPGDKCRSVEDVRFEFGVT----LRLLAGNDIRLE 168
G+ + ++ LL + LP S D+ FG+T RL+A RL+
Sbjct: 459 LGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRLQ 513
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 71.3 bits (174), Expect = 4e-15
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 4 EIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP-IIGRHITREIQADKYTIPI 62
E+ + + + T T D ++ L ++KETLR+ P P +I R ++ + Y IP
Sbjct: 329 EVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPA 388
Query: 63 GATVAAFIYQIHRDPRHWS-NPHCFQPDRFLPSEISRRNPN-AYLPFSSGPRNCVGSKYG 120
G TV + + RD + W NP F+P+RFL E+ + + ++PF SG R C G + G
Sbjct: 389 GTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLG 448
Query: 121 MLQMKTTLSTLLRRY 135
++ + LL +
Sbjct: 449 AAMLEVPYANLLLNF 463
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 69.0 bits (169), Expect = 3e-14
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 18 TYDQIQELHLLTRVIKETLRLYPAAPIIGRHITR-EIQADKYTIPIGATVAAFIYQIHRD 76
TYD + +L L VI ETLRLYPA P + I ++ D + G V Y + R
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 77 PRHW-SNPHCFQPDRFLPSEISRR-NPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLR- 133
+W + F+P+R++ + + +P + F +GPR C+G LQMK L+ L R
Sbjct: 424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRF 483
Query: 134 -RYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+++++PG V++ L + G + + R
Sbjct: 484 FKFQLVPG------HPVKYRMMTILSMANGLKVTVSRR 515
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 69.2 bits (169), Expect = 3e-14
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITRE-IQADKYT 59
++DEI GDD E V D + ++ L V+ E LR +P A + H E ++ Y
Sbjct: 343 LHDEIKAKTGDDQEEVSEED-VHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYL 401
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPS------EISRRNPNAYLPFSSGPRN 113
IP GATV + ++ RD R W P F P+RFL +++ +PF G R
Sbjct: 402 IPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRI 461
Query: 114 CVGSKYGMLQMKTTLSTLLRRY--RVLPGDKCRSVEDVRF 151
C G ML ++ ++ ++R + + +PGD+ E F
Sbjct: 462 CAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREF 501
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 67.7 bits (165), Expect = 9e-14
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 18 TYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDP 77
T++ +++ L +RVI+ETLR+ R +++ + Y IP G V IH
Sbjct: 319 TWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSA 378
Query: 78 RHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYR 136
+S+P F P RF E++ + PN ++PF +G +C G++ L++ + L +YR
Sbjct: 379 DIFSDPGKFDPSRF---EVAPK-PNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYR 433
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 67.2 bits (164), Expect = 1e-13
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP-IIGRHITREIQADKYT 59
+ +E+ V+G + + L+ L V++ET R++PA P +I R + Y
Sbjct: 333 IQEELDSVVG--RNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYY 390
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISR----RNPN-AYLPFSSGPRNC 114
IP V + + R+ + W + F+P+R P+E SR P+ LPFS+G R C
Sbjct: 391 IPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKC 450
Query: 115 VGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVE-DVRFEFGVTL 157
G+ G+ + L+ L + P D R + D + +G+T+
Sbjct: 451 PGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTM 494
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 64.7 bits (158), Expect = 9e-13
Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 3 DEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITRE-IQADKYTIP 61
+E +V+G + + ++++++E+H L + E++RL+P + + + D +
Sbjct: 332 EEADRVMGPN-QEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVA 390
Query: 62 IGATVAAFIYQIHRDPRHWSNPHC--FQPDRFLPS-EISRRNPNAYLPFSSGPRNCVGSK 118
G V Y + R R W P C F+P+R+L + NP Y F +G R C+G +
Sbjct: 391 KGTRVTYHPYAMGRMERIWG-PDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKE 449
Query: 119 YGMLQMKTTLSTLLRRYRV-LPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+++MK+ ++RR+ + + G R+ RF G+T + G +R+ R
Sbjct: 450 MALMEMKSVAVAVVRRFDIEVVGRSNRA---PRFAPGLTATVRGGLPVRVRER 499
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 63.1 bits (153), Expect = 3e-12
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 3 DEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT-REIQADKYTIP 61
+EI +V+G E I +L+ + +I+E RL+P A H+ + Y IP
Sbjct: 366 EEIDRVVGK--ERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIP 423
Query: 62 IGATVAAFIYQIHRDPRHWSNPHCFQPDRFLP--SEIS-RRNPNAYLPFSSGPRNCVGSK 118
G+ V Y + R+P+ WS+P F+P+R L SE++ N ++ FS+G R C
Sbjct: 424 KGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPA 483
Query: 119 YGMLQMKTTLSTLLRRYR-VLPGDKCR 144
G L+ LL+ ++ L G + R
Sbjct: 484 LGTAITTMMLARLLQGFKWKLAGSETR 510
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 61.0 bits (148), Expect = 2e-11
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 14 ETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQI 73
E+ ++ +++ VI ETLRL + R ++++ Y IP G V I +
Sbjct: 332 ESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAV 391
Query: 74 HRDPRHWSNPHCFQPDRFL-------PSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKT 126
H D + P F P R+ S S N ++PF GPR C GS+ L+M
Sbjct: 392 HLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAV 451
Query: 127 TLSTLLRRYR 136
+ L+ +
Sbjct: 452 FIHHLVLNFN 461
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 60.0 bits (145), Expect = 4e-11
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 31 VIKETLRLYPAAPIIG---RHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQ 87
V+ ETLR+ A IIG R +I+ YTIP G V A +H D ++ + F
Sbjct: 335 VVNETLRV---ANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFN 391
Query: 88 PDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDK 142
P R+ + + N + PF GPR C G + + + L L+ R+ +P ++
Sbjct: 392 PWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQ 446
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 57.8 bits (139), Expect = 2e-10
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 3 DEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADK----Y 58
DE+ V+GD + + + I L L VIKE+LRL P PI+ + RE AD Y
Sbjct: 327 DEVRNVIGD--KGYVSEEDIPNLPYLKAVIKESLRLEPVIPIL---LHRETIADAKIGGY 381
Query: 59 TIPIGATVAAFIYQIHRDPRHW-SNPHCFQPDRFLPSEIS---RRNPNAYLPFSSGPRNC 114
IP + + + RD W NP+ F P+RF+ + LPF SG R C
Sbjct: 382 DIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMC 441
Query: 115 VGSKYGMLQMKTTLSTLLRRY 135
G+ ++ + LL ++
Sbjct: 442 PAMHLGIAMVEIPFANLLYKF 462
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 57.9 bits (140), Expect = 2e-10
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 13 PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQ 72
PE ++ + + VI ET RL + R T++++ + Y IP G + + +
Sbjct: 314 PEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTRE 373
Query: 73 IHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLL 132
I+ DP + +P F P R+L + S + N + F G R C G + G++++ T L +
Sbjct: 374 INYDPFLYPDPMTFNPWRWL--DKSLESHNYFFLFGGGTRLCPGKELGIVEISTFLHYFV 431
Query: 133 RRYR 136
RYR
Sbjct: 432 TRYR 435
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 57.3 bits (138), Expect = 3e-10
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 4 EIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITRE-IQADKYTIPI 62
E+ +V+G D V D I L+ L +ET R++P+A + H+ R+ Y IP
Sbjct: 354 ELDEVVGKD-RLVQESD-IPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPK 411
Query: 63 GATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSE-ISRR-----NPNAYLPFSSGPRNCVG 116
G+ + + R+P+ W +P ++P+R L + I++ ++ FS+G R CVG
Sbjct: 412 GSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVG 471
Query: 117 SKYGMLQMKTTLSTLLRRY 135
K G + M L+ L+ +
Sbjct: 472 VKVGTIMMVMMLARFLQGF 490
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 52.3 bits (125), Expect = 2e-08
Identities = 32/136 (23%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 20 DQIQELHLLTRVIKETLRLYPAAPIIGRHITR-EIQADKYTIPIGATVAAFIYQIHRDPR 78
+ +++L L + E++RLYP P + + ++ + + + + IY + R
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 79 HWSNPHC-FQPDRFLPSEISRRNPNAY--LPFSSGPRNCVGSKYGMLQMKTTLSTLLRRY 135
W F+P+R++ R+ +Y + F+SGPR C+G +LQMK +++ Y
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNY 468
Query: 136 --RVLPGDKCRSVEDV 149
+V+ G K ++ +
Sbjct: 469 DFKVIEGHKIEAIPSI 484
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 50.9 bits (122), Expect = 5e-08
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 30 RVIKETLRLYPAAPIIG--RHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQ 87
VI ETLR+ I G R ++++ Y IP G V A+ +H D ++ NP+ F
Sbjct: 319 NVITETLRM--GNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFN 376
Query: 88 PDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYR 136
P R+ ++ N +++ PF G R C G L+ L L+ R+R
Sbjct: 377 PWRWQEKDM---NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFR 422
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 33.8 bits (78), Expect = 0.030
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 3 DEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQAD----KY 58
+E+ + V T+ ++++ L+ V+ E LR+ P P + + +
Sbjct: 312 EEVRSAVKAGGGGV-TFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAF 370
Query: 59 TIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGP 111
I G + + + RDP+ + P F PDRF+ E + + +S+G
Sbjct: 371 EIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVF--WSNGR 421
>gnl|CDD|152729 pfam12294, DUF3626, Protein of unknown function (DUF3626). This
family of proteins is found in bacteria. Proteins in
this family are typically between 294 and 374 amino
acids in length.
Length = 297
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 40 PAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWS 81
PA P + + I D Y I + A + +P WS
Sbjct: 240 PAMPSLAQRIAINGVIDAYIIGVAA------ADLQHNPSSWS 275
>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine
modification protein; Provisional.
Length = 190
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 143 CRSVEDVRFEFGVTLRLLAG 162
CR+VE+VR +FG ++ G
Sbjct: 148 CRTVEEVRAQFGAAFPVVPG 167
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional.
Length = 190
Score = 27.0 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 132 LRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+R ++LPG E V+ E VT G D+ L SR
Sbjct: 122 VRTVKMLPGVVVEKSESVKDEIIVT-----GADLELVSR 155
>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6.
Length = 200
Score = 26.8 bits (60), Expect = 4.9
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 114 CVGSKYGMLQMKTTLSTLLRRYRV-LPGDKCRSVEDVRFEFGVTL--RLLAGND 164
VG+ G+L TT L+ R LP SVE R E +T L+ ND
Sbjct: 59 TVGNSNGLLVPNTTTDQELQHLRNSLPD----SVEVQRVEERLTALGNLILCND 108
>gnl|CDD|225509 COG2961, ComJ, Protein involved in catabolism of external DNA
[General function prediction only].
Length = 279
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 34 ETLRLYPAAPIIGRHITREIQADKY 58
LR YP +P++ R + RE D+
Sbjct: 91 GGLRYYPGSPLLARQLLRE--QDRL 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.430
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,072,166
Number of extensions: 827623
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 43
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)