RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5847
(170 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 130 bits (327), Expect = 5e-37
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 2 YDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIP 61
+EI VL + PTYD + ++ L V+ ETLRL+P A + R ++++ + IP
Sbjct: 305 QEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIP 362
Query: 62 IGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 121
G V Y +HRDP++W+ P F P+RF +P Y PF SGPRNC+G ++ +
Sbjct: 363 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 422
Query: 122 LQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+ MK L +L+ + P + + ++ G L+ +++ESR
Sbjct: 423 MNMKLALIRVLQNFSFKPCKE--TQIPLKLSLGGLLQPEKPVVLKVESR 469
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 124 bits (310), Expect = 1e-34
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IGRHITREIQADKYT 59
V EI ++G + + P++D ++ V+ E LR P+ I + + Y+
Sbjct: 297 VQKEIDLIMGPNGK--PSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYS 354
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKY 119
IP G TV +Y +H D ++W +P F P+RFL S A +PFS G R+C+G
Sbjct: 355 IPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHL 414
Query: 120 GMLQMKTTLSTLLRRYRV-LPGDKCRSVEDVRFEFGVTLR 158
++M + LL+R+ + P + V D++ G+TL+
Sbjct: 415 ARMEMFLFFTALLQRFHLHFPHEL---VPDLKPRLGMTLQ 451
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 117 bits (292), Expect = 5e-32
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 4/171 (2%)
Query: 1 VYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT-REIQADKYT 59
V EI QV+G P D ++ VI E RL P H ++ Q Y
Sbjct: 297 VQKEIEQVIGSHRP--PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYV 354
Query: 60 IPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKY 119
IP V + DPR++ P+ F P FL + + + ++PFS G R C+G
Sbjct: 355 IPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGI 414
Query: 120 GMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
++ +T+L+ + + ++ E GV + IR +R
Sbjct: 415 ARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGN-VPPSYQIRFLAR 464
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 103 bits (256), Expect = 5e-27
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 7 QVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHIT-REIQADKYTIPIGAT 65
+V+G + P + V+ E R P H +I+ Y IP G T
Sbjct: 304 RVIGRNRS--PCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTT 361
Query: 66 VAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMK 125
+ + + D + + NP F P FL + + ++PFS+G R CVG +++
Sbjct: 362 ILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELF 421
Query: 126 TTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLR 158
L+++L+ + + ++++ G
Sbjct: 422 LFLTSILQNFNLKSLVDPKNLDTTPVVNGFASV 454
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 97.5 bits (241), Expect = 6e-25
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 14 ETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQ-ADKYTIPIGATVAAFIYQ 72
+ VP+Y Q+++L + V+ E LRL+P AP + + +Y + G + I Q
Sbjct: 298 DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQ 357
Query: 73 IHRDPRHWS-NPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTL 131
+HRD W + F+P+RF S +A+ PF +G R C+G ++ + + L +
Sbjct: 358 LHRDKTIWGDDVEEFRPERFENP--SAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMM 415
Query: 132 LRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
L+ + ++ + +TL+ G ++ +S+
Sbjct: 416 LKHFDFEDHTN----YELDIKETLTLK-PEGFVVKAKSK 449
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 89.2 bits (219), Expect = 5e-22
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 48 HITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFL-PSEISRRNPNAYLP 106
E + + I G VAA +R P + +PH F P R+ P + N ++P
Sbjct: 323 VAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIP 382
Query: 107 FSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIR 166
F +G CVG+ + ++Q+K S LLR Y + ++L +R
Sbjct: 383 FGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQP--PESYRNDHSKMVVQLAQPAAVR 440
Query: 167 LESR 170
R
Sbjct: 441 YRRR 444
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 86.0 bits (211), Expect = 6e-21
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 39 YPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISR 98
R + + I G + +RD +SNP F RF
Sbjct: 311 TAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF------- 363
Query: 99 RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLR 158
PN +L F G C+G L+MK LL + + + R +
Sbjct: 364 --PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSV-----ELSGPPRLVATNFVG 416
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 85.5 bits (210), Expect = 1e-20
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 11/149 (7%)
Query: 26 HLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHC 85
++E R YP P +G + ++ + G +V +Y + DPR W +P
Sbjct: 269 REREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDE 328
Query: 86 FQPDRFLPSEISRRNPNAYLPFSSG----PRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 141
F+P+RF N +P G C G + MK +L L+ + +
Sbjct: 329 FRPERFAE---REENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPE 385
Query: 142 KCRSVEDVRFEFGVTLRLLAGNDIRLESR 170
+ R +G + R
Sbjct: 386 QSLHYSLARM----PSLPESGFVMSGIRR 410
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 83.7 bits (205), Expect = 4e-20
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 69 FIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 128
+ H+ + F+P+RFL Y PF G R C+G + +L+ L
Sbjct: 293 VLSPYVTQRLHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGRDFALLEGPIVL 350
Query: 129 STLLRRYRVLPGDKCRSVEDV--RFEFGVTLRL 159
RR+R+ P R + V R E G+ R
Sbjct: 351 RAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARP 383
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 82.9 bits (203), Expect = 7e-20
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 36 LRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSE 95
LR R E++ IP +TV +RDP+ + +PH F R
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD---- 335
Query: 96 ISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGV 155
+L F G C+G L+ + L L R+ L +DV + +
Sbjct: 336 -----TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGI--DADDVVWRRSL 388
Query: 156 TLRLLAGNDIRLE 168
LR + +RL+
Sbjct: 389 LLRGIDHLPVRLD 401
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 82.2 bits (201), Expect = 1e-19
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 47 RHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLP 106
+T D TI G + A +R P + F R +L
Sbjct: 290 YAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRT---------VKEHLA 340
Query: 107 FSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIR 166
F G C+G+ +++ L +L R+ L E++ + +
Sbjct: 341 FGHGVHFCLGAPLARMEVTLALESLFGRFPDL--RLADPAEELPPVPSLISNGHQRLPVL 398
Query: 167 LES 169
L +
Sbjct: 399 LHA 401
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 78.3 bits (191), Expect = 3e-18
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 47 RHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLP 106
R ++ + + A +RD + NP F +R P P L
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWP-------PQDPLG 340
Query: 107 FSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLR 158
F G C+ ++ T STL +++ L + + +
Sbjct: 341 FGFGDHRCIAEHLAKAELTTVFSTLYQKFPDL--KVAVPLGKINYTPLNRDV 390
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 76.7 bits (187), Expect = 1e-17
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
Query: 38 LYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEIS 97
L R ++ I G +V + +RDP + R
Sbjct: 276 LTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTR------- 328
Query: 98 RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTL 157
P ++ F G +C+G+ L+++T + L RR+ L +D F
Sbjct: 329 --EPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPAL--RLADPAQDTEFRLTTPA 384
Query: 158 R 158
Sbjct: 385 Y 385
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 76.4 bits (186), Expect = 1e-17
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 9/131 (6%)
Query: 37 RLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEI 96
P + ++ R ++ IP G + + RD R DRF +
Sbjct: 278 FSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHG----PTADRFDLT-- 331
Query: 97 SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVT 156
R + N ++ F GP C G+ ++ L L R+ L D ++R + VT
Sbjct: 332 -RTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHL--DLAVPAAELRNKPVVT 388
Query: 157 LRLLAGNDIRL 167
L +RL
Sbjct: 389 QNDLFELPVRL 399
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 74.5 bits (181), Expect = 7e-17
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 11/148 (7%)
Query: 11 DDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFI 70
PE E+ + A + R +++ I G V
Sbjct: 252 SRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSY 311
Query: 71 YQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLST 130
+RDP + +P +R +PN ++ F GP C G L+ + +
Sbjct: 312 LAANRDPEVFPDPDRIDFER---------SPNPHVSFGFGPHYCPGGMLARLESELLVDA 362
Query: 131 LLRRYRVLPGDKCRSVEDVRFEFGVTLR 158
+L R L + EDV F+ G +R
Sbjct: 363 VLDRVPGL--KLAVAPEDVPFKKGALIR 388
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 74.5 bits (181), Expect = 8e-17
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 58 YTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNPNAYLPFSSGPRNCVGS 117
+I G V I RD +S P F R +A L + GP C G
Sbjct: 303 ASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYGRGPHVCPGV 353
Query: 118 KYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLAGNDIRLE 168
L+ + + T+ RR+ + + E F + R + ++ L+
Sbjct: 354 SLARLEAEIAVGTIFRRFPEM-----KLKETPVFGYHPAFRNIESLNVILK 399
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 72.9 bits (177), Expect = 3e-16
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 31 VIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDR 90
++E LR P R +++ I G V +I +RD + +P F PDR
Sbjct: 243 AVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDR 302
Query: 91 FLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVE 147
PN +L F SG C+G+ L+ + L +++RV K ++
Sbjct: 303 ---------TPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIVKKEKID 350
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 72.6 bits (176), Expect = 3e-16
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 39 YPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISR 98
P R ++ TI G V +I +RD + + F PDR
Sbjct: 251 SPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDR-------- 302
Query: 99 RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLR 158
NPN +L F SG C+G+ L+ + + +R+R + + D L
Sbjct: 303 -NPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIE------ILDTEKVPNEVLN 355
Query: 159 LLAGNDIRLES 169
+RL+S
Sbjct: 356 GYKRLVVRLKS 366
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 71.7 bits (174), Expect = 7e-16
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 31 VIKETLRLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDR 90
V + L P R +++ D I G V I +RD +P +R
Sbjct: 279 VNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANR 338
Query: 91 FLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRY 135
+ + F G CVG+ ++ TL RR+
Sbjct: 339 A---------AVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRF 374
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 71.3 bits (173), Expect = 8e-16
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 42 APIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEISRRNP 101
A + R T +IQ + G V + + DP H+ NP + DR NP
Sbjct: 280 ADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRP--------NP 331
Query: 102 NAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFGVTLRLLA 161
++L F G C GS G + + LL++ + D ++ + + R+
Sbjct: 332 TSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGV--DLAVPIDQLVWRTRFQRRIPE 389
Query: 162 G 162
Sbjct: 390 R 390
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 67.4 bits (163), Expect = 2e-14
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 12/111 (10%)
Query: 37 RLYPAAPIIGRHITREIQADKYTIPIGATVAAFIYQIHRDPRHWSNPHCFQPDRFLPSEI 96
+ GR +T + + + G + D R + P R
Sbjct: 279 LRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR------ 332
Query: 97 SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRY---RVLPGDKCR 144
++ F G C+G ++ TL L R + PG + +
Sbjct: 333 ---QKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQ 380
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 25.8 bits (57), Expect = 1.0
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 52 EIQADKYTIPIGATVAAFIYQIHRD 76
+ + + G+T +++H D
Sbjct: 18 NVLPHVFLMKKGSTPRDLAFKVHTD 42
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296
{Legionella pneumophila [TaxId: 446]}
Length = 271
Score = 24.8 bits (54), Expect = 5.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 34 ETLRLYPAAPIIGRHITRE 52
TL YP +P + R
Sbjct: 85 STLSYYPGSPYFAINQLRS 103
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb
(Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 174
Score = 24.7 bits (53), Expect = 5.9
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 6 VQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIG 46
+ ++GD +P + L + PA ++G
Sbjct: 100 IVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLG 140
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Length = 116
Score = 23.9 bits (52), Expect = 6.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 43 PIIGRHITR----EIQADKYTIPIGATVAAFIYQIHR 75
P+I ++ +I KY +P TVA F++ I +
Sbjct: 30 PVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRK 66
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 25.0 bits (53), Expect = 6.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 2 YDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLY 39
Y + G D TY +++ LH +ET Y
Sbjct: 596 YAAFGRGHGHDLAPFDTYHEVRGLHWPVVEGEETRWRY 633
>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 198
Score = 24.1 bits (52), Expect = 9.1
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 82 NPHCFQPDRFLPSEISRRNPNAYLPF 107
+P + ++F+ E S A L
Sbjct: 135 DPKEYA-NQFM-WEYSTNYGQAPLSL 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.430
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,115
Number of extensions: 31224
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 31
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)