BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5848
(1753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ EV + ++ + + + G++L+ + FLSGMP++ LG+ND V
Sbjct: 3 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL 62
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
G+ + LE V+FH CV+ +E RTI F PPD + ELM +R+
Sbjct: 63 FDNTGRGKSKSV--------ELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRL 112
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ EV + ++ + + + G++L+ + FLSGMP++ LG+ND V
Sbjct: 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL 219
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
G+ + + LE V+FH CV+ +E RTI F PPD + ELM +R+
Sbjct: 220 FDNTGRGK--------SKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRL 269
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At 2.5
A Resolution
Length = 314
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 41 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 100
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 101 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 157
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 48 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 107
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 108 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 164
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90 With
The Clathrin Adaptor Ap-2
Length = 299
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 26 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 85
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 86 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 142
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 12 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 71
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 72 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 128
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt
Length = 288
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 131/320 (40%), Gaps = 63/320 (19%)
Query: 1394 ALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGK 1453
+ Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND + K
Sbjct: 18 GIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK 77
Query: 1454 EVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPR 1513
+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R +
Sbjct: 78 QGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRT--TK 134
Query: 1514 NRELPLQLKAVMCVTG-NKVELRADI---LVPGFVSRKLGQIPCEDIMVRFPIPECWIYL 1569
+ LP ++ ++ G K+E++ I P +++K I VR P P
Sbjct: 135 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQK--------IEVRIPTP------ 180
Query: 1570 FRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629
T V+ I G++KY+ +IVW++
Sbjct: 181 ----------------LNTSGVQVI----------------CMKGKAKYKASENAIVWKI 208
Query: 1630 PRLP--KEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSV 1687
R+ KE Q S L + D+ I V F +V + V
Sbjct: 209 KRMAGMKESQISAEIE------LLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 262
Query: 1688 SISNSDSDVPPEKYVRHLAR 1707
++ SD DV K+VR++ R
Sbjct: 263 KLNYSDHDVI--KWVRYIGR 280
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 162 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 221
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 222 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 278
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ EV + ++ + + + G++L+ + FLSG P++ LG+ND V
Sbjct: 3 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDKVL 62
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
G+ + LE V+FH CV+ +E RTI F PPD + EL +R+
Sbjct: 63 FDNTGRGKSKSV--------ELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELXSYRL 112
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 1401 EVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHD 1460
E+ + ++ + + + G +L R+ +LSGMP+ + G+ND + K+ G D
Sbjct: 122 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 181
Query: 1461 IIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 182 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYR 228
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLV- 1449
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 162 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 221
Query: 1450 --RQGK------------EVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFK 1495
+QGK +++ D+ ++ I ++ FH CV+ +++ R+I F
Sbjct: 222 IEKQGKGTADETSKSMEQKLISEEDL----GKQSIAIDDCTFHQCVRLSKFDSERSISFI 277
Query: 1496 PPDACYIELMRFR 1508
PPD + ELMR+R
Sbjct: 278 PPDGEF-ELMRYR 289
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su
Terminal Domain, In Complex With A Sorting Peptide From
The Precursor Protein (App)
Length = 301
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 1388 PVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVND 1447
PV R+ + EV + V+ + V GS+LK + + FL ++ +G+ +
Sbjct: 21 PVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTE 80
Query: 1448 LVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRF 1507
GK + + IR++ V FHS V DE+E R ++ +PP + +MR+
Sbjct: 81 EFSVGKSELRGYG-------PGIRVDEVSFHSSVNLDEFESHRILRLQPPQG-ELTVMRY 132
Query: 1508 RVRPPRNRELPLQL 1521
++ LP +L
Sbjct: 133 QLSDDLPSPLPFRL 146
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGS-ILKQIARVRLFFLGFLSGMPDIELGVNDLV 1449
R + Y E V+EI +++GS + +I V + LSGMPD+ L +
Sbjct: 11 RRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIK-LSGMPDLSLSFMN-- 67
Query: 1450 RQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
P + L+ V FH C++ +E R + F PPD + L+ +RV
Sbjct: 68 -------------PRL------LDDVSFHPCIRFKRWESERVLSFIPPDGNF-RLISYRV 107
Query: 1510 RPPRNRELPLQLKAVMCVTGNKVELRADILV 1540
+P+ +K + N R DI +
Sbjct: 108 SSQNLVAIPVYVKHNISFKENSSCGRFDITI 138
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase
Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid Aminotransferase
Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase
Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid Aminotransferase
Inactivated By D-Cycloserine
Length = 282
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate
Length = 277
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With
Pyridoxal-5'-Phosphate
Length = 282
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase
Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid Aminotransferase
Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase
In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid Aminotransferase
In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 953 ATAEPIQ----HTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTI 1003
A+AE I+ +T D+F L + KNE T + T G P A FPE T+
Sbjct: 53 ASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTV 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,599,778
Number of Sequences: 62578
Number of extensions: 1966296
Number of successful extensions: 2962
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2929
Number of HSP's gapped (non-prelim): 32
length of query: 1753
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1641
effective length of database: 7,964,601
effective search space: 13069910241
effective search space used: 13069910241
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)