Query psy5848
Match_columns 1753
No_of_seqs 460 out of 892
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 19:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2677|consensus 100.0 1E-111 2E-116 986.1 38.1 445 1218-1716 446-893 (922)
2 KOG0938|consensus 100.0 2.2E-76 4.8E-81 658.1 30.3 369 1290-1714 49-446 (446)
3 KOG0937|consensus 100.0 7E-65 1.5E-69 588.0 29.2 363 1289-1714 49-423 (424)
4 KOG2740|consensus 100.0 8.2E-56 1.8E-60 498.6 24.6 323 1316-1713 87-417 (418)
5 PF00928 Adap_comp_sub: Adapto 100.0 1.2E-50 2.5E-55 449.1 27.2 260 1388-1714 1-261 (262)
6 KOG1924|consensus 99.1 2.6E-10 5.6E-15 140.0 12.6 73 811-883 604-708 (1102)
7 KOG1924|consensus 99.1 4.5E-10 9.8E-15 137.9 10.9 26 590-615 421-447 (1102)
8 KOG2635|consensus 98.7 1.1E-06 2.3E-11 104.6 21.4 224 1399-1708 274-502 (512)
9 PHA03247 large tegument protei 98.5 5.3E-06 1.1E-10 112.8 20.1 43 52-94 1727-1782(3151)
10 KOG3671|consensus 98.4 4.3E-06 9.4E-11 100.7 16.1 35 660-694 287-328 (569)
11 PHA03247 large tegument protei 98.4 1.3E-05 2.8E-10 109.2 20.9 11 193-203 1938-1948(3151)
12 PF10291 muHD: Muniscin C-term 98.0 0.00067 1.4E-08 78.2 22.7 210 1403-1687 4-227 (257)
13 KOG3671|consensus 98.0 0.00014 2.9E-09 88.4 16.5 11 534-544 194-204 (569)
14 PF01217 Clat_adaptor_s: Clath 97.9 3.7E-06 8.1E-11 87.5 2.0 78 1285-1362 47-133 (141)
15 KOG1923|consensus 97.0 0.0029 6.4E-08 80.4 10.2 23 827-849 372-394 (830)
16 KOG1830|consensus 96.7 0.027 5.8E-07 68.1 15.0 17 866-882 485-504 (518)
17 KOG1923|consensus 96.4 0.0082 1.8E-07 76.6 8.3 8 842-849 374-381 (830)
18 PRK15319 AIDA autotransporter- 94.4 0.052 1.1E-06 74.9 5.9 20 247-266 1232-1251(2039)
19 KOG1830|consensus 94.3 1.3 2.7E-05 54.5 16.3 11 867-877 481-491 (518)
20 KOG0132|consensus 94.1 0.87 1.9E-05 59.2 15.2 22 60-81 90-111 (894)
21 PRK15319 AIDA autotransporter- 93.1 0.13 2.8E-06 71.4 6.1 8 879-886 1762-1769(2039)
22 KOG4849|consensus 92.0 2.4 5.3E-05 51.1 13.9 13 869-881 364-376 (498)
23 KOG4672|consensus 92.0 1.8 3.8E-05 53.2 12.9 18 841-858 407-424 (487)
24 KOG1922|consensus 91.4 0.83 1.8E-05 60.8 10.6 29 824-852 394-422 (833)
25 PRK15313 autotransport protein 90.6 0.51 1.1E-05 62.7 7.3 53 209-261 138-196 (955)
26 KOG4672|consensus 90.2 1.2 2.7E-05 54.5 9.4 11 1025-1035 472-482 (487)
27 PRK15313 autotransport protein 88.7 0.7 1.5E-05 61.5 6.5 25 576-600 483-507 (955)
28 PHA03378 EBNA-3B; Provisional 88.0 4.1 9E-05 52.6 12.0 19 610-628 588-606 (991)
29 PHA03378 EBNA-3B; Provisional 85.9 39 0.00085 44.4 18.6 15 617-631 582-596 (991)
30 KOG0307|consensus 85.9 22 0.00048 48.7 17.4 29 413-442 473-503 (1049)
31 KOG0566|consensus 84.6 8.1 0.00018 51.9 12.5 17 428-444 670-689 (1080)
32 PRK14950 DNA polymerase III su 82.5 4.1 9E-05 52.6 8.9 10 967-976 571-580 (585)
33 KOG1922|consensus 81.9 5.3 0.00012 53.5 9.9 13 837-849 394-406 (833)
34 KOG0132|consensus 81.1 9 0.00019 50.5 10.8 13 549-561 427-439 (894)
35 KOG1925|consensus 75.3 4.8 0.0001 50.5 5.9 10 842-851 308-317 (817)
36 KOG0566|consensus 75.1 55 0.0012 44.7 15.3 23 534-558 782-804 (1080)
37 KOG3343|consensus 72.7 1.5 3.3E-05 48.1 0.9 48 1315-1362 86-141 (175)
38 KOG1785|consensus 71.8 10 0.00022 46.8 7.3 16 389-404 183-198 (563)
39 KOG4462|consensus 70.9 1.2E+02 0.0027 37.6 15.8 8 553-560 31-38 (437)
40 KOG0307|consensus 70.0 82 0.0018 43.6 15.5 14 313-326 387-400 (1049)
41 KOG4462|consensus 66.7 1.3E+02 0.0028 37.5 14.7 13 644-656 175-187 (437)
42 cd01239 PH_PKD Protein kinase 64.0 18 0.00039 38.5 6.4 52 1219-1281 2-53 (117)
43 COG5178 PRP8 U5 snRNP spliceos 61.8 6.1 0.00013 53.4 3.2 10 1291-1300 541-550 (2365)
44 KOG0260|consensus 59.7 2.7E+02 0.0059 39.5 17.0 30 379-408 1117-1146(1605)
45 PRK09752 adhesin; Provisional 58.5 8.6 0.00019 52.9 3.8 10 55-64 63-72 (1250)
46 KOG0260|consensus 58.0 2.7E+02 0.0058 39.6 16.6 21 62-82 712-732 (1605)
47 COG5178 PRP8 U5 snRNP spliceos 57.9 8.2 0.00018 52.3 3.3 14 1350-1363 728-741 (2365)
48 cd01266 PH_Gab Gab (Grb2-assoc 55.9 40 0.00088 34.3 7.3 57 1220-1279 2-61 (108)
49 PRK09752 adhesin; Provisional 53.3 12 0.00026 51.6 3.9 9 327-335 374-382 (1250)
50 KOG4590|consensus 51.2 55 0.0012 41.3 8.7 19 576-594 6-24 (409)
51 PF15449 Retinal: Retinal prot 50.3 3.9E+02 0.0085 37.7 16.3 29 881-909 1194-1222(1287)
52 KOG0119|consensus 47.9 3.4E+02 0.0074 35.4 14.5 22 430-451 151-173 (554)
53 PF05518 Totivirus_coat: Totiv 45.2 1.8E+02 0.0039 39.4 12.1 10 614-623 530-539 (759)
54 PF15324 TALPID3: Hedgehog sig 42.9 2.4E+02 0.0051 39.5 12.7 26 234-263 569-594 (1252)
55 KOG0162|consensus 41.3 2.5E+02 0.0054 38.0 12.3 13 23-35 66-78 (1106)
56 KOG2893|consensus 39.9 5.3E+02 0.012 30.9 13.5 40 558-597 24-69 (341)
57 cd01230 PH_EFA6 EFA6 Pleckstri 38.8 89 0.0019 33.1 6.8 67 1230-1300 16-84 (117)
58 KOG2391|consensus 38.7 52 0.0011 40.5 5.6 12 871-882 227-238 (365)
59 KOG4590|consensus 37.8 71 0.0015 40.3 6.8 13 597-609 49-61 (409)
60 cd01242 PH_ROK Rok (Rho- assoc 37.1 48 0.001 35.2 4.5 45 1225-1273 5-52 (112)
61 PRK07764 DNA polymerase III su 37.1 2.7E+02 0.0059 38.3 12.5 7 842-848 514-520 (824)
62 KOG0119|consensus 35.1 4.2E+02 0.0091 34.6 12.6 30 429-458 97-126 (554)
63 smart00233 PH Pleckstrin homol 34.6 1.6E+02 0.0035 26.9 7.2 41 1236-1281 14-57 (102)
64 KOG0935|consensus 33.8 18 0.00039 38.6 0.8 43 1316-1358 88-130 (143)
65 KOG2675|consensus 32.6 46 0.001 42.0 4.1 47 547-595 101-151 (480)
66 KOG4307|consensus 32.4 1.4E+02 0.0029 40.0 8.1 19 461-479 17-35 (944)
67 KOG1985|consensus 31.6 8.4E+02 0.018 33.9 14.9 35 1214-1248 528-562 (887)
68 KOG1984|consensus 30.8 1.7E+03 0.037 31.4 17.5 11 1218-1228 656-666 (1007)
69 TIGR01628 PABP-1234 polyadenyl 30.0 1.9E+02 0.004 37.4 9.0 18 426-443 175-192 (562)
70 COG5030 APS2 Clathrin adaptor 29.4 30 0.00064 37.9 1.6 43 1317-1359 88-130 (152)
71 PF15324 TALPID3: Hedgehog sig 28.6 1.8E+03 0.039 31.7 17.3 9 555-563 826-834 (1252)
72 KOG0559|consensus 27.1 1.3E+02 0.0028 37.6 6.4 28 896-926 256-283 (457)
73 KOG0162|consensus 27.1 5.1E+02 0.011 35.3 11.8 9 619-627 900-908 (1106)
74 KOG2893|consensus 26.3 4.2E+02 0.009 31.7 9.9 16 663-678 74-89 (341)
75 TIGR01628 PABP-1234 polyadenyl 26.0 2.1E+02 0.0045 36.9 8.5 9 107-115 43-51 (562)
76 KOG1925|consensus 26.0 73 0.0016 40.8 4.2 8 877-884 305-312 (817)
77 PF00169 PH: PH domain; Inter 25.9 1.8E+02 0.0038 27.4 6.0 61 1235-1300 12-76 (104)
78 PF15410 PH_9: Pleckstrin homo 24.8 1.2E+02 0.0026 31.7 5.0 32 1226-1261 12-43 (119)
79 PRK07764 DNA polymerase III su 24.2 3.7E+02 0.0081 37.1 10.5 9 387-395 136-144 (824)
80 PRK12270 kgd alpha-ketoglutara 24.1 2.5E+02 0.0053 39.5 8.6 78 1432-1513 671-759 (1228)
81 PF04625 DEC-1_N: DEC-1 protei 23.9 1.4E+02 0.0031 36.6 5.8 8 880-887 253-260 (407)
82 PF01213 CAP_N: Adenylate cycl 23.3 27 0.00059 42.5 0.0 11 601-611 139-149 (312)
83 PF01690 PLRV_ORF5: Potato lea 23.2 61 0.0013 41.4 2.9 31 1469-1505 163-199 (465)
84 KOG2422|consensus 22.3 52 0.0011 42.9 2.1 36 27-62 119-157 (665)
85 PF01690 PLRV_ORF5: Potato lea 21.5 70 0.0015 40.9 2.9 9 833-841 43-51 (465)
86 PRK12323 DNA polymerase III su 21.4 6.2E+02 0.013 34.5 11.3 15 614-628 333-347 (700)
87 PLN02983 biotin carboxyl carri 21.4 1.5E+02 0.0033 35.8 5.4 8 842-849 207-214 (274)
88 cd01260 PH_CNK Connector enhan 20.8 2E+02 0.0043 28.3 5.4 54 1236-1299 16-69 (96)
89 PRK14954 DNA polymerase III su 20.0 2.7E+02 0.0058 37.2 7.8 17 899-915 527-543 (620)
No 1
>KOG2677|consensus
Probab=100.00 E-value=9.9e-112 Score=986.07 Aligned_cols=445 Identities=38% Similarity=0.652 Sum_probs=421.3
Q ss_pred CCCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEE
Q psy5848 1218 DGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVK 1297 (1753)
Q Consensus 1218 ~~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVk 1297 (1753)
.++||+||||||+|||||++||||||||||+..| +|||||++|+++|||||+||+||+|||++||+||++|||||||
T Consensus 446 P~~GW~~MlRiPeKKn~MssR~WgPifvkl~~~g---~LqlYyeqglekPf~E~~L~~~~~lSep~lqnydv~GkIHtvk 522 (922)
T KOG2677|consen 446 PRDGWPMMLRIPEKKNIMSSRHWGPIFVKLTDTG---YLQLYYEQGLEKPFREFKLEICHELSEPRLQNYDVNGKIHTVK 522 (922)
T ss_pred CCCCCcceeecchhhhhhhhccccceEEEEcCCc---eEEEeecccccchHHHHhhhhhhccCchhhhccccccceeEEE
Confidence 3899999999999999999999999999999766 9999999999999999999999999999999999999999999
Q ss_pred EeeEEEeecCCCCCCcchhHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccccceeeccCCcccccccccc
Q psy5848 1298 LQFIFYKERPGVRPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFT 1377 (1753)
Q Consensus 1298 l~~v~ykEk~~~~P~~~~~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~LKlGS~~~~dl~sf~ 1377 (1753)
|+||+||||++||| |.++.|++++.+.||+|+++|.++++|+
T Consensus 523 i~~V~YkEK~ky~p--------------------------------------k~~v~H~a~~eq~lKlGstny~dfl~Fi 564 (922)
T KOG2677|consen 523 IDRVTYKEKKKYQP--------------------------------------KPAVAHTAEREQVLKLGSTNYDDFLSFI 564 (922)
T ss_pred EEEEEeehhcccCC--------------------------------------CCccccchhhhhhhhccCCcHHHHHHHH
Confidence 99999999999999 5889999999999999999999999999
Q ss_pred hhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEecccccccccccc
Q psy5848 1378 VCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVG 1457 (1753)
Q Consensus 1378 ~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvG 1457 (1753)
++|++.||+++.-|...-+|..+||.|||+++++++|+++|+++.+.|..+|+|+|||+|.++|+|||||.+++|+++|-
T Consensus 565 ttVed~Lmklpv~s~~k~nY~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~ 644 (922)
T KOG2677|consen 565 TTVEDRLMKLPVLSMDKSNYLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVL 644 (922)
T ss_pred HHHHHHHhcCccccccccccccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEeCcEEEEEEE
Q psy5848 1458 RHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRAD 1537 (1753)
Q Consensus 1458 r~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vsg~kVELri~ 1537 (1753)
|.||||..+.+||+|.+|.||.||+.++|+++|+|.|.|+|||||+|||||+..+.+ +|||.|+..+.+.|++|||+++
T Consensus 645 rkDimp~~t~kwI~~~~~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~~-~lpftlks~~~V~Ga~VEvq~~ 723 (922)
T KOG2677|consen 645 RKDIMPTTTTKWIKLHECRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAEK-TLPFTLKSATSVNGAEVEVQSW 723 (922)
T ss_pred eccccccccccceeeeeeeeecccchhhccccceEEecCcccceeeeeeeeeecCCC-cCceeeeeeeeeccceeehHHH
Confidence 999999999999999999999999999999999999999999999999999998654 8999999999999999999999
Q ss_pred EeccCcccCC---CCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCce
Q psy5848 1538 ILVPGFVSRK---LGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSG 1614 (1753)
Q Consensus 1538 L~vtgf~S~~---~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~G 1614 (1753)
++|...+++. ..+++|+||+||||||..|||+||+|+++|++|+|++++|.++.+++. +..++++|+|++|
T Consensus 724 ~~mat~~qr~rd~~~~vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~gsl~------~~~sepvi~vt~G 797 (922)
T KOG2677|consen 724 LRMATGFQRNRDPLTQVPCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFGSLS------VSGSEPVIRVTLG 797 (922)
T ss_pred HHHHhhhhhccCccccCcccceeEeccCcHHHHHHHHHHhhhccchhhhhhcccccccchh------hccCCceEEEeec
Confidence 9875444432 457999999999999999999999999999999999998866554432 1235799999999
Q ss_pred eEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCC
Q psy5848 1615 QSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDS 1694 (1753)
Q Consensus 1615 tAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~ 1694 (1753)
+|||++++++|||||+||+.++++.|++|+|.|+|+|+|++++|..| ++++.|+|+||..++|.+.||+|.|..
T Consensus 798 ~AKYEhay~siVWrI~RLPdKnsa~~hpHcl~c~lELgSd~evPs~f---~p~~~V~FsmP~t~aS~t~VRSisVE~--- 871 (922)
T KOG2677|consen 798 TAKYEHAYNSIVWRINRLPDKNSASGHPHCLFCHLELGSDREVPSRF---APHVNVEFSMPTTSASKTSVRSISVED--- 871 (922)
T ss_pred chhhHHhhhhheeecccCCccccccCCCeeEEEEEeccccccCchhh---ccccceeeeccccccccceeeeeeccc---
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999965
Q ss_pred CCCCccCeEEEEEcCcEEEEEe
Q psy5848 1695 DVPPEKYVRHLARHEYRVGIEH 1716 (1753)
Q Consensus 1695 ~ykP~KWVRYiTkSgYyV~re~ 1716 (1753)
...+.|||+|.++|.|+|.+..
T Consensus 872 ~~~v~K~V~y~A~Y~yqv~l~~ 893 (922)
T KOG2677|consen 872 KTDVRKWVNYSAHYSYQVALGS 893 (922)
T ss_pred cccHHHHHhhhhheeeeeeecc
Confidence 4589999999999999999874
No 2
>KOG0938|consensus
Probab=100.00 E-value=2.2e-76 Score=658.08 Aligned_cols=369 Identities=22% Similarity=0.343 Sum_probs=302.7
Q ss_pred CCCeEEEEEee----EEEeecCCCCCCcch-------hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccc
Q psy5848 1290 FGKIFTVKLQF----IFYKERPGVRPGQVT-------KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQ 1358 (1753)
Q Consensus 1290 ~gKIHtVkl~~----v~ykEk~~~~P~~~~-------~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Tepn 1358 (1753)
-|..-++|+++ ++...|-+.-- .+ ...++.-|||.++|++|++||++|||||||||||||||+|+++
T Consensus 49 igsttf~~~r~~nl~lvaitksN~Nv--a~v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~ 126 (446)
T KOG0938|consen 49 IGSTTFHHIRSSNLWLVAITKSNANV--AAVFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPN 126 (446)
T ss_pred ecceeEEEEeeccEEEEEEecCCCch--hhHHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChh
Confidence 36667777777 55555555432 22 2356788999999999999999999999999999999999999
Q ss_pred cceeecc-------CCc-c--cccccccchhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEE
Q psy5848 1359 TSQLFKI-------GSH-S--YEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVR 1428 (1753)
Q Consensus 1359 iLq~LKl-------GS~-~--~~dl~sf~~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~Gs 1428 (1753)
+|+.++- |.. . .+...+....-..++...+.||+.|++|++||||+||+|++|++|+++|+|++++|.|+
T Consensus 127 al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~ 206 (446)
T KOG0938|consen 127 ALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGT 206 (446)
T ss_pred HHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccE
Confidence 9998832 221 1 11112222111233445689999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCeEEEEeccccccc-ccc-----ccccccccccccccEEeccccccccccccccccCceEEEeCCCCcee
Q psy5848 1429 LFFLGFLSGMPDIELGVNDLVRQG-KEV-----VGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYI 1502 (1753)
Q Consensus 1429 I~~kSFLSGmPec~LgLND~~l~g-kev-----vGr~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFf 1502 (1753)
|.|+|||||||+|++||||.+.+. ++. .|.....+..+.+.|.|+||.|||||+|++|+++++|+|+||||+|
T Consensus 207 V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~- 285 (446)
T KOG0938|consen 207 VDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEF- 285 (446)
T ss_pred EEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCce-
Confidence 999999999999999999987432 222 2222234556667799999999999999999999999999999999
Q ss_pred eeEeEEecCCCCCCCCeEEEEEEE-EeCcEEEEEEEEeccCcccCCCCCcccceEEEEecCCCcchhhhccccccccccc
Q psy5848 1503 ELMRFRVRPPRNRELPLQLKAVMC-VTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSV 1581 (1753)
Q Consensus 1503 eLMrYRVs~~~n~~LPF~Vkp~v~-vsg~kVELri~L~vtgf~S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SV 1581 (1753)
+||+||++. ++.|||+|.|.++ ++.+++++++.|. +.+ ..++.+.+|++|||+|.++++
T Consensus 286 ELMkYr~~e--nInlPFrV~PiV~el~r~kie~ri~ik--s~f---~~kl~a~~v~~rIPvP~ntv~------------- 345 (446)
T KOG0938|consen 286 ELMKYRVTE--NINLPFRVTPIVTELGRTKIEYRITIK--SLF---PPKLLAKDVVVRIPVPPNTVK------------- 345 (446)
T ss_pred EeEeeeecc--CcccceEeeeheecccceeEEEEEEEe--ccC---CchhhhcceEEEecCCCcccc-------------
Confidence 999999985 7889999999998 5678999999994 222 245789999999999999641
Q ss_pred cccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCC-CCcc
Q psy5848 1582 KSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQ-IPDD 1660 (1753)
Q Consensus 1582 kS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~e-ip~~ 1660 (1753)
..++|+.|+|+|++++++++|+|+|+.|. ++.+|++.++|.+..+ ...|
T Consensus 346 -------------------------~n~~v~~Gkaky~psen~ivWki~kf~G~-----tE~tlsAevels~Tt~nkq~W 395 (446)
T KOG0938|consen 346 -------------------------CNISVSNGKAKYVPSENAIVWKINKFNGL-----TESTLSAEVELSDTTQNKQQW 395 (446)
T ss_pred -------------------------ceeEEecCccccCcccceEEEEecccCCc-----ccceeEEEEEeccCccccccc
Confidence 12568899999999999999999999987 5678999999977653 3333
Q ss_pred cccCCCceEEEEEeCcccccccEEeEEEeecCCCCCCCccCeEEEEEcCcEEEE
Q psy5848 1661 LHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLARHEYRVGI 1714 (1753)
Q Consensus 1661 ~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTkSgYyV~r 1714 (1753)
. .|||+|+|++|||+.|||+||||+|.+..+.|+..|||||+|++|+|-+|
T Consensus 396 t---rPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR 446 (446)
T KOG0938|consen 396 T---RPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR 446 (446)
T ss_pred c---CCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence 2 89999999999999999999999999987899999999999999988654
No 3
>KOG0937|consensus
Probab=100.00 E-value=7e-65 Score=588.04 Aligned_cols=363 Identities=21% Similarity=0.335 Sum_probs=296.7
Q ss_pred cCCCeEEEEEee----EEEeecCCCCCCcch-----hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCccccccccc
Q psy5848 1289 NFGKIFTVKLQF----IFYKERPGVRPGQVT-----KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQT 1359 (1753)
Q Consensus 1289 ~~gKIHtVkl~~----v~ykEk~~~~P~~~~-----~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Tepni 1359 (1753)
.+.+.|+++++| ++.+.+.++.+..+- .++++.+||+.|.|++|++||++|||||||||||||||+|++++
T Consensus 49 ~~~g~~~~~ik~s~lylv~~~~~n~~a~~v~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~i 128 (424)
T KOG0937|consen 49 VHDGSRFIHIKHSNLYLVAGTRPNVSAALVLSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEI 128 (424)
T ss_pred EeCCceEEEEeecceEEEEEeccCCCHHHHHHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHH
Confidence 467899999999 444446666653221 45889999999999999999999999999999999999999999
Q ss_pred ceeecc-CCcccccccccchhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCC
Q psy5848 1360 SQLFKI-GSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGM 1438 (1753)
Q Consensus 1360 Lq~LKl-GS~~~~dl~sf~~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGm 1438 (1753)
|++|+. .+....+.. + ...-+..+.+.||..|++|+|||+|+||+|+|+++++++|.+++++|.|+|+|||||+||
T Consensus 129 L~~yi~~~~~~l~~~~-~--~~p~avtnavsWrs~gi~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGm 205 (424)
T KOG0937|consen 129 LKNYITQKANRLQDAQ-P--RPPLAVTNAVSWRSEGIYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGM 205 (424)
T ss_pred HHHHhcccccceeecC-C--CCCcccccceeecccccccccceEEEEhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCC
Confidence 999964 332222221 1 112233355789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccccccccccccccccccccccccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCC
Q psy5848 1439 PDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELP 1518 (1753)
Q Consensus 1439 Pec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LP 1518 (1753)
|+|+|+||+..+.++. | +.+++..|.|+||+||+||++++|+.+|+|+|+||||+| +||+||++.+ .. |
T Consensus 206 Pelrl~ln~~~~~~~~--~-----~~~~s~~v~ledi~fh~~v~l~~fd~dr~i~FiPPdGeF-~Lm~Y~ls~~--vk-P 274 (424)
T KOG0937|consen 206 PELRLGLNDKVLFDKQ--G-----PRSKSKGVELEDIKFHECVRLSRFDNDRTISFIPPDGEF-ELMRYRLSTH--VK-P 274 (424)
T ss_pred ceeeeecCcccccccc--c-----ccccCcceEeeecccceeechhhccCCceEEecCCCCce-EEEEEEecCC--CC-C
Confidence 9999999999874432 2 234557899999999999999999999999999999999 9999999863 33 5
Q ss_pred e-EEEEEEE-EeCcEEEEEEEEeccCcccCCCCCcccceEEEEecCCCcchhhhccccccccccccccccccCcccccee
Q psy5848 1519 L-QLKAVMC-VTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIER 1596 (1753)
Q Consensus 1519 F-~Vkp~v~-vsg~kVELri~L~vtgf~S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~ 1596 (1753)
+ .+..... .+..++++.|.+. ..|. .+..++||.|+||+|....
T Consensus 275 li~~~~~~~~~~~~ri~i~~K~~-~~fk----~~~~a~~v~I~iP~P~~a~----------------------------- 320 (424)
T KOG0937|consen 275 LIWFYQLIEEHSRSRIEVMVKLR-EQFK----SRSSANNVEICIPVPDDAS----------------------------- 320 (424)
T ss_pred eEEeeeeeeeccceeEEEEEech-hhcC----CccccceEEEEeeCCCccc-----------------------------
Confidence 5 4433333 3467888888874 3333 3478999999999997632
Q ss_pred ecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCc
Q psy5848 1597 FLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPA 1676 (1753)
Q Consensus 1597 ~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~ 1676 (1753)
.+.++.+.|+++|..++++++|+|++++|+ .++.|++++.|++...-+. .....+||+|+|+||+
T Consensus 321 ---------~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg-----~e~~~r~~~~lp~~~~e~~-~~~~~~pi~v~FeIp~ 385 (424)
T KOG0937|consen 321 ---------SPSFKTSLGSAKYDPEKSALRWTIKKFVGG-----KEYSLRARMDLPSEEHEEQ-CTEGLGPIKVKFEIPY 385 (424)
T ss_pred ---------cceEeccCCceeeecccceEEEEeccccCC-----ceEEEEEeecCCccccCCC-CcccCCceEEEEEecc
Confidence 134678899999999999999999999987 4789999999987543221 1234899999999999
Q ss_pred ccccccEEeEEEeecCCCCCCCccCeEEEEEcCcEEEE
Q psy5848 1677 TQVSHTTVRSVSISNSDSDVPPEKYVRHLARHEYRVGI 1714 (1753)
Q Consensus 1677 ~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTkSgYyV~r 1714 (1753)
||+||++||||+|.+...+|++++||||+|++|-|+.|
T Consensus 386 ~T~SgiqVrylki~ep~~~y~s~~WVRy~T~s~~Y~~r 423 (424)
T KOG0937|consen 386 FTVSGIQVRYLKIIEPKSQYQSLPWVRYNTQSGPYEIR 423 (424)
T ss_pred cccCCeEEEEEEecccccCCCccceEEEEccCCceEee
Confidence 99999999999999877889999999999999977765
No 4
>KOG2740|consensus
Probab=100.00 E-value=8.2e-56 Score=498.59 Aligned_cols=323 Identities=18% Similarity=0.258 Sum_probs=268.5
Q ss_pred hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccccceeeccCCcccc-cc------cccchhhhhhhccCC
Q psy5848 1316 KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYE-AM------KQFTVCIEEALFKLP 1388 (1753)
Q Consensus 1316 ~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~LKlGS~~~~-dl------~sf~~tve~aL~slp 1388 (1753)
.+++|++|||.||+.+|++|+++|||||+||+|+|||..||+|+||+++-...... .+ .+...++.....+.+
T Consensus 87 v~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~V 166 (418)
T KOG2740|consen 87 VVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNV 166 (418)
T ss_pred HHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCCCcccccc
Confidence 56889999999999999999999999999999999999999999999954322111 00 011111112223579
Q ss_pred cccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccc
Q psy5848 1389 VHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEE 1468 (1753)
Q Consensus 1389 pWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~ 1468 (1753)
|||+.+++|.+||.||||+|+++++++++|..+.++|.|.|.|+|+|||||++.|.||+..
T Consensus 167 PWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np~------------------- 227 (418)
T KOG2740|consen 167 PWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNPR------------------- 227 (418)
T ss_pred cccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCcc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999754
Q ss_pred cEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEeCcEEEEEEEEeccCcccCCC
Q psy5848 1469 WIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKL 1548 (1753)
Q Consensus 1469 ~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vsg~kVELri~L~vtgf~S~~~ 1548 (1753)
.|+|++||+||++.+|+++++|+||||||+| +||+||++......+|..|++.+.+.++. ++|+.+.+..+. ..
T Consensus 228 --~L~dvsfHpcVr~krwe~~~~lsFIPPDGkF-rLlsy~v~~~~~v~~pvyv~~~i~l~~~~-~~ri~~tvg~~~--~~ 301 (418)
T KOG2740|consen 228 --LLGDVSFHPCVRYKRWESHSVLSFIPPDGKF-RLLSYRVDAQNQVAIPVYVKNSISLDSNH-QGRISLTVGPKK--KM 301 (418)
T ss_pred --ccCCcccccceeecccccccceEEcCCCCcE-EEEEEEEehhhccccceEEeeeeccCCCc-eEEEEEeccccc--cc
Confidence 3899999999999999999999999999999 99999999877788999999999987766 556655432211 12
Q ss_pred CCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEE
Q psy5848 1549 GQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWR 1628 (1753)
Q Consensus 1549 ~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWr 1628 (1753)
+ ...+-+.|.+..|.++.+. ..-.++|+..++...+.+-|.
T Consensus 302 g-K~ie~itVt~~~pn~i~~~--------------------------------------~k~~~~g~~~~~~~~k~l~W~ 342 (418)
T KOG2740|consen 302 G-KTIELITVTVQDPNEIAYA--------------------------------------SKILTHGTFTNSIIMKQLTWT 342 (418)
T ss_pred c-ceeEeEEEEecCccceeee--------------------------------------ecccccceeEeecccceeEEE
Confidence 2 4567778888888874210 012478999999999999999
Q ss_pred eCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCCCCCCccCeEEEEEc
Q psy5848 1629 MPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLARH 1708 (1753)
Q Consensus 1629 I~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTkS 1708 (1753)
++++..+ +.++|++++++......+.. .+.++++|.|.+.++|||+|..|++.+. .|++||||||.|++
T Consensus 343 ~~~i~tg-----~lp~Lkg~~~~e~~~sk~~~----l~t~~Lqykiqg~alsglkVe~Ldm~~~--~~k~yKGvKy~t~a 411 (418)
T KOG2740|consen 343 FGSIATG-----KLPVLKGTINLEPGFSKKVD----LPTLSLQYKIQGQALSGLKVERLDMYGE--PYKPYKGVKYKTKA 411 (418)
T ss_pred eecccCC-----cccccccccccCCCCCcccc----CcccceeeeeeeeeccceEEEeeeecCC--CCccccceEEEEee
Confidence 9998866 56899999999765555444 7899999999999999999999999876 48999999999999
Q ss_pred C-cEEE
Q psy5848 1709 E-YRVG 1713 (1753)
Q Consensus 1709 g-YyV~ 1713 (1753)
| ++|+
T Consensus 412 gnfqvR 417 (418)
T KOG2740|consen 412 GNFQVR 417 (418)
T ss_pred eeEEEe
Confidence 8 6554
No 5
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=100.00 E-value=1.2e-50 Score=449.05 Aligned_cols=260 Identities=27% Similarity=0.511 Sum_probs=208.7
Q ss_pred CcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEecccccccccccccccccccccc
Q psy5848 1388 PVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTE 1467 (1753)
Q Consensus 1388 ppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~ 1467 (1753)
+|||+.+++|++|||||||+|+|+++++++|.++.++|.|+|+|+|||+|||+|+|+||+.... ..
T Consensus 1 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~--------------~~ 66 (262)
T PF00928_consen 1 VPWRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVV--------------SK 66 (262)
T ss_dssp -TTS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCC--------------TS
T ss_pred CCcccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCcccc--------------cc
Confidence 5899999999999999999999999999999999999999999999999999999999988531 24
Q ss_pred ccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEE-eCcEEEEEEEEeccCcccC
Q psy5848 1468 EWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCV-TGNKVELRADILVPGFVSR 1546 (1753)
Q Consensus 1468 ~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~v-sg~kVELri~L~vtgf~S~ 1546 (1753)
.++.|+||+||+||++++|+++|+|+|+||||.| +||+||++. +..+||.|.+.+.. +++++++++.+... .
T Consensus 67 ~~~~l~~~~fH~cV~~~~~~~~~~i~f~PPdg~f-~Ll~Yr~~~--~~~~P~~i~~~~~~~~~~~~~v~i~~~~~--~-- 139 (262)
T PF00928_consen 67 NGIKLDDVSFHPCVDLSKFESDRVISFIPPDGEF-TLLRYRVSS--NSPLPFKITCWVSEKSSGRFEVTIELESN--F-- 139 (262)
T ss_dssp SSBEESEEEEETTEECCCCCSHTEEEE---SEEE-EEEEEEEES--SS--SEEEEEEEEEETTTEEEEEEEEEE---S--
T ss_pred CceeeeceeeccccCccccccccceecCCCCceE-EEEEEEccC--CCCCCcEEEEEeccCCCceEEEEEEeccc--C--
Confidence 5789999999999999999999999999999999 999999986 47899999998886 67889998888421 1
Q ss_pred CCCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEE
Q psy5848 1547 KLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIV 1626 (1753)
Q Consensus 1547 ~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIV 1626 (1753)
.....|+||.|+||+|.++. + ..+.++.|+++|++.+++|+
T Consensus 140 -~~~~~~~~v~I~iplP~~~~---------------~-----------------------~~~~~~~G~~~~~~~~~~l~ 180 (262)
T PF00928_consen 140 -PNKISLENVVIRIPLPPGTS---------------S-----------------------PSIESSDGSAEYDEEENALV 180 (262)
T ss_dssp --TTSEEEEEEEEEE--TTEE---------------E-----------------------EEEEESSSEEEEETGCTEEE
T ss_pred -CCCceeceEEEEeecCCccc---------------c-----------------------ceeeecCceEEEEccCCEEE
Confidence 12478999999999998742 0 22456889999999999999
Q ss_pred EEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCCCCCCccCeEEEE
Q psy5848 1627 WRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLA 1706 (1753)
Q Consensus 1627 WrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiT 1706 (1753)
|+|+++.++ ++++|+|.|++.+....+.. ...++|.|+|++|++++|||+|++|+|.+...+|+|+|||||+|
T Consensus 181 W~I~~~~~~-----~~~~l~~~l~~~~~~~~~~~--~~~~pi~v~F~~~~~~~Sgl~V~~l~v~~~~~~~~~~k~vky~t 253 (262)
T PF00928_consen 181 WKIKKLPGG-----SESTLSGTLEFSSPSSVPSD--WSFFPISVEFTIPGYTLSGLKVRSLDVVNEDENYKPYKWVKYVT 253 (262)
T ss_dssp EEEEEEETS-----EEEEEEEEEEEEEECCSS-S-------EEEEEEESTSETTT-EEEEEEEE-SSCGGGSEEEEEEEE
T ss_pred EEECCccCc-----ccccEEEEEEecCCCccccc--ccceeEEEEEEeCCcccCCCEEEEEEeEecCCCCCCcccEEEEE
Confidence 999999985 57889999999776655431 12779999999999999999999999998556799999999999
Q ss_pred EcCcEEEE
Q psy5848 1707 RHEYRVGI 1714 (1753)
Q Consensus 1707 kSgYyV~r 1714 (1753)
+||.|.+|
T Consensus 254 ~s~~Y~iR 261 (262)
T PF00928_consen 254 KSGSYEIR 261 (262)
T ss_dssp EEEEEEE-
T ss_pred EcCcEEEc
Confidence 99977665
No 6
>KOG1924|consensus
Probab=99.13 E-value=2.6e-10 Score=139.97 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCCCC-C------CCCCCCCCCCCCCCC-ceecccCCC------------------------cccccccC
Q psy5848 811 PKVAPSVPARPAPPK-I------LDNKEPPIIPRDSSD-LTYNTSTPS------------------------SRKASITN 858 (1753)
Q Consensus 811 P~~~p~~p~~p~Pp~-p------~dfl~~pI~P~~~sd-TLWn~~tps------------------------~~e~SEi~ 858 (1753)
++.+|.+|-+=.|+. . .-+.|..|-|++.+. -.|-....+ ..+.++.+
T Consensus 604 ~pmaPvlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekk 683 (1102)
T KOG1924|consen 604 FPMAPVLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKK 683 (1102)
T ss_pred ccccccCCCCCCccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhcccccccccccccccc
Confidence 346677777666644 1 347889999988655 556433221 11233334
Q ss_pred CCCCcccccccccchhHhhhhcccc
Q psy5848 859 PEAPRKYSKENVIDNDVLIQNAINS 883 (1753)
Q Consensus 859 ~e~~RK~~~~n~l~~~ramq~Sl~a 883 (1753)
+-..||..+.-|++.--||.=||..
T Consensus 684 t~~kKk~kel~ilDsKtaQnLsIfl 708 (1102)
T KOG1924|consen 684 TGTKKKVKELRILDSKTAQNLSIFL 708 (1102)
T ss_pred chhhhhhhhheecchHHHHHHHHHH
Confidence 3333445555588877777666653
No 7
>KOG1924|consensus
Probab=99.06 E-value=4.5e-10 Score=137.93 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=15.5
Q ss_pred CCcceEEeCCC-CcccccccCCCCchh
Q psy5848 590 IPKVVAFIEPP-GVNGTEENSRKPSYQ 615 (1753)
Q Consensus 590 ~pK~Va~Ie~~-~~~~~~~~~~dP~~q 615 (1753)
.|+++-+||.. ++-++-.++.||+|-
T Consensus 421 rpqYykLIEecISqIvlHr~~~DPdf~ 447 (1102)
T KOG1924|consen 421 RPQYYKLIEECISQIVLHRTGMDPDFK 447 (1102)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 44444444443 555666778888853
No 8
>KOG2635|consensus
Probab=98.70 E-value=1.1e-06 Score=104.59 Aligned_cols=224 Identities=17% Similarity=0.257 Sum_probs=149.6
Q ss_pred cceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccccEEecccccc
Q psy5848 1399 MEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFH 1478 (1753)
Q Consensus 1399 kNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDcsFH 1478 (1753)
+|-|++-|-|+|++.++++|.+-..++.|.+.++--=----.+.|.|++.. ..+ -+.++|
T Consensus 274 ~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~~-----------------~~g---~q~ktH 333 (512)
T KOG2635|consen 274 EESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANGR-----------------DKG---TQLKTH 333 (512)
T ss_pred cceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCCC-----------------Ccc---eeeeeC
Confidence 444999999999999999999999999997654322222222333333211 011 246899
Q ss_pred ccccccccccCceEEEeCCCCce-----eeeEeEEecCCCCCCCCeEEEEEEEEeCcEEEEEEEEeccCcccCCCCCccc
Q psy5848 1479 SCVQQDEYEKGRTIKFKPPDACY-----IELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPC 1553 (1753)
Q Consensus 1479 qCVdLdeFE~dRvISFIPPDGeF-----feLMrYRVs~~~n~~LPF~Vkp~v~vsg~kVELri~L~vtgf~S~~~~q~~c 1553 (1753)
+-++.+.|.++.+|...+|+--| .-|+++|........+|+.+.+==..+|+.+.+.+.--. . .....
T Consensus 334 PNlDK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g~dV~iEYe~---~----~~~eL 406 (512)
T KOG2635|consen 334 PNLDKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNGYDVNIEYEA---V----LECEL 406 (512)
T ss_pred CCcchhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCCeEEEEEEee---h----hcccc
Confidence 99999999999999999988666 358999987644567899776543334443444333210 0 12456
Q ss_pred ceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCC
Q psy5848 1554 EDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLP 1633 (1753)
Q Consensus 1554 ENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLp 1633 (1753)
.||.|.||+|.++. ++..+.-|.+.|+...+.+.|.|..+.
T Consensus 407 ~dV~i~iPlP~~ia---------------------------------------psv~~~Dge~~~~~~~~~leW~I~~Ia 447 (512)
T KOG2635|consen 407 NDVIITIPLPANIA---------------------------------------PSVGECDGEYRYDERKNVLEWSIGVIA 447 (512)
T ss_pred cceEEEeecccccC---------------------------------------CccceecceEEeccccceeEEEeeeec
Confidence 79999999998731 122344589999999999999999994
Q ss_pred CCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCCCCCCccCeEEEEEc
Q psy5848 1634 KEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLARH 1708 (1753)
Q Consensus 1634 Gkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTkS 1708 (1753)
+| .++.++++-....+.. .-|++|.|+-- .+.+||+|..+--.+. . -=|||.+..
T Consensus 448 -~N--------~SGslEFs~~~~~~~~----fFPl~VsF~s~-~~ftgl~vqkVv~~~~---~---~~~~y~~~t 502 (512)
T KOG2635|consen 448 -KN--------FSGSLEFSCPASDPDG----FFPLSVSFTSD-TVFTGLFVQKVVRNDG---H---APVRYSVET 502 (512)
T ss_pred -cC--------CCCcEEEeecCCCCCc----eeeEEEEEEec-ccccceEEEEEEEcCC---C---CCceeEEEE
Confidence 33 2333443211222333 56999999987 5899999998754322 1 346666665
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=98.45 E-value=5.3e-06 Score=112.82 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=31.1
Q ss_pred CchHHHHHHHHhhhhhH-------------HHhhhhhhhhhhhcccccccCCCCCC
Q psy5848 52 KSDEWQKFKALTAGVDS-------------ILKKTHDDLEQLKQTSYFQRKPPGPS 94 (1753)
Q Consensus 52 ~~~ew~kf~~lt~gvd~-------------~l~ktq~dl~rik~~s~~qr~p~~~~ 94 (1753)
-+|-|..|+.-+.|+|- -||-+-+-..-+.+..-|-|+|.+-.
T Consensus 1727 WDeaW~~F~r~~~~~~~S~e~~~~A~~~a~aLQas~~~V~~Lrad~~Y~RLPak~~ 1782 (3151)
T PHA03247 1727 WDEVWGRFGRVRGGAWKSPEALRAAREQLRALQTATNTVLGLRADAHYERLPAKYQ 1782 (3151)
T ss_pred HHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHhhhcchhhccCCHHHh
Confidence 47999999998877762 24444455556678889999987655
No 10
>KOG3671|consensus
Probab=98.41 E-value=4.3e-06 Score=100.74 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=17.8
Q ss_pred hhhchhhcc---c-cccccccc---cccccCCCCCCCCCCCC
Q psy5848 660 ETKDLILTV---T-GHMEATSS---HLDRCHAARTPSPTPMR 694 (1753)
Q Consensus 660 etqdLil~v---q-G~~~~tSS---qqdr~pp~~~PsPp~p~ 694 (1753)
+|..+|+++ + +++..... ++.+.-..|.|+|++.|
T Consensus 287 ~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP~PsR 328 (569)
T KOG3671|consen 287 DTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPPPPSR 328 (569)
T ss_pred hhccccccchhcCCCCCcccccchhhcccccCCCCCcCCccc
Confidence 667777777 2 44444444 44343334444443444
No 11
>PHA03247 large tegument protein UL36; Provisional
Probab=98.38 E-value=1.3e-05 Score=109.21 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=7.6
Q ss_pred ccccccccccc
Q psy5848 193 DEDIFDTAFVD 203 (1753)
Q Consensus 193 ~~difdt~yvd 203 (1753)
-|=.|-|+|+|
T Consensus 1938 ID~~f~~~yLd 1948 (3151)
T PHA03247 1938 LDLPFATSYLA 1948 (3151)
T ss_pred cccccceeeec
Confidence 33478888887
No 12
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=98.03 E-value=0.00067 Score=78.21 Aligned_cols=210 Identities=17% Similarity=0.281 Sum_probs=109.2
Q ss_pred EEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCC-------CeEEEEeccccccccccccccccccccccccEEeccc
Q psy5848 1403 QITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGM-------PDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGV 1475 (1753)
Q Consensus 1403 FVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGm-------Pec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDc 1475 (1753)
-.-|+|.||+.+.. |.+.++.|.|.|.| +|..|. +.+.|.|++-... +.+. -+-
T Consensus 4 ~asi~E~VnA~Fk~-g~~~~v~v~GEv~l-s~~~~~~~~~~~~~~l~~rl~n~~~l--e~i~---------------pN~ 64 (257)
T PF10291_consen 4 NASITETVNAYFKG-GQLSKVKVTGEVAL-SYPAGISSSLTSPPPLSFRLNNFSRL--EKIA---------------PNP 64 (257)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEE--SSS-----SEEEEEEETGGGE--EEEE---------------E-T
T ss_pred eEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCChhhcccCCCcEEEEEcCcchh--ceee---------------cCH
Confidence 35689999999864 77888999999976 454443 4567777654321 1111 111
Q ss_pred cccccccccccccCceEEEeCCCC-ce--eeeEeEEecCCCC--CCCCeEEEEEEEEeCcEEEEEEEEeccCcccCCCCC
Q psy5848 1476 EFHSCVQQDEYEKGRTIKFKPPDA-CY--IELMRFRVRPPRN--RELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQ 1550 (1753)
Q Consensus 1476 sFHqCVdLdeFE~dRvISFIPPDG-eF--feLMrYRVs~~~n--~~LPF~Vkp~v~vsg~kVELri~L~vtgf~S~~~~q 1550 (1753)
.|=.+.. ..+....|.++-= .. ...|+|++..... ..+|+.|.+..........|+++.... .......
T Consensus 65 ~~v~~~~----~~~~~f~~n~~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~N--p~~~~~~ 138 (257)
T PF10291_consen 65 QFVSSSS----QSDGEFWLNMSALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLN--PDAFASP 138 (257)
T ss_dssp TTE--EE----EETTEEEE-TTTTBT-E-EEEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE---TTT--E-
T ss_pred hHeecCC----CCCCcEEEehHHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeC--hhhcccc
Confidence 1110000 0111233333211 11 1348999987432 678999999999877776666666321 1110112
Q ss_pred cccceEEEEecCCCc-chhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEe
Q psy5848 1551 IPCEDIMVRFPIPEC-WIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629 (1753)
Q Consensus 1551 ~~cENV~IrIPVPk~-~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI 1629 (1753)
..-+||.|.++|... ++ ++. + .=.+.|..+.+.|.|+|
T Consensus 139 ~~L~nv~~~v~l~g~~~t---------------s~~-------------------------s-kP~g~~~~e~~ri~Wrl 177 (257)
T PF10291_consen 139 VPLENVVFSVPLDGGRAT---------------SAQ-------------------------S-KPQGTWNKEKNRITWRL 177 (257)
T ss_dssp EEEEEEEEEEEB-SS-EE---------------EEE-------------------------E-SSS--B-SSS-EEEEE-
T ss_pred ceeeeEEEEEEcCCcccc---------------ccc-------------------------c-CCCccccCCCcEEEEEC
Confidence 567899999998765 21 100 0 01256888999999999
Q ss_pred CCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeC-cccccccEEeEE
Q psy5848 1630 PRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMP-ATQVSHTTVRSV 1687 (1753)
Q Consensus 1630 ~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP-~~TaSGLkVRSL 1687 (1753)
+.+.-.+.+. ...|.|+|.+..... ..++|.|+|++- +.+.||+.|.-+
T Consensus 178 ~el~~~~~~~--~~kL~ARf~~~~~~~-------~p~~v~vkF~~~~~~~~sg~~i~~~ 227 (257)
T PF10291_consen 178 PELSLTSEGE--GGKLIARFMTSGGPS-------RPGGVEVKFEIEGGSTLSGLGISLV 227 (257)
T ss_dssp SSEEEETT-----EEEEEEEEESS-----------SS-EEEEEEE---S-SS----EEE
T ss_pred CcccccCCCC--CceEEEEEECCCCCC-------CCceEEEEEEEcCCCcccCcEEEEe
Confidence 9976332211 167999998854332 156899999999 899999988877
No 13
>KOG3671|consensus
Probab=97.99 E-value=0.00014 Score=88.37 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=6.7
Q ss_pred CCCCchhhhhc
Q psy5848 534 DDPFDTSIVHS 544 (1753)
Q Consensus 534 ~dPfDTS~~~~ 544 (1753)
.++-+||.-..
T Consensus 194 ~n~~~tS~~~t 204 (569)
T KOG3671|consen 194 LNPLITSLTDT 204 (569)
T ss_pred hcccccccccc
Confidence 47777874443
No 14
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=97.93 E-value=3.7e-06 Score=87.50 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=57.9
Q ss_pred cccccCCCeEEEEEee----EEEeecCCCCCCcc-----hhHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCccccc
Q psy5848 1285 QQYDNFGKIFTVKLQF----IFYKERPGVRPGQV-----TKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEH 1355 (1753)
Q Consensus 1285 q~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~-----~~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~T 1355 (1753)
..+=.+++...|..++ ++..-....-+-.+ ..++.|..|||.++|..|+.||+.||++||||+|+|++++|
T Consensus 47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~et 126 (141)
T PF01217_consen 47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILET 126 (141)
T ss_dssp TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--
T ss_pred ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEEC
Confidence 5555677777787775 45555555554221 14588899999999999999999999999999999999999
Q ss_pred cccccee
Q psy5848 1356 APQTSQL 1362 (1753)
Q Consensus 1356 epniLq~ 1362 (1753)
+++.+..
T Consensus 127 d~~~I~~ 133 (141)
T PF01217_consen 127 DPNVILK 133 (141)
T ss_dssp THHHHHH
T ss_pred CHHHHHH
Confidence 9987643
No 15
>KOG1923|consensus
Probab=96.96 E-value=0.0029 Score=80.38 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCceecccCC
Q psy5848 827 LDNKEPPIIPRDSSDLTYNTSTP 849 (1753)
Q Consensus 827 ~dfl~~pI~P~~~sdTLWn~~tp 849 (1753)
+-+.|-++.|-.+..|+|+++.-
T Consensus 372 p~lnW~alKP~qv~~tvf~~~~D 394 (830)
T KOG1923|consen 372 PSLNWLALKPIQVKGTVFHELND 394 (830)
T ss_pred CCccccccCccccccchhhhhhH
Confidence 45778888888877788877653
No 16
>KOG1830|consensus
Probab=96.72 E-value=0.027 Score=68.13 Aligned_cols=17 Identities=0% Similarity=0.261 Sum_probs=11.8
Q ss_pred cccc---ccchhHhhhhccc
Q psy5848 866 SKEN---VIDNDVLIQNAIN 882 (1753)
Q Consensus 866 ~~~n---~l~~~ramq~Sl~ 882 (1753)
..+| ||++-++++-|..
T Consensus 485 v~ndvatiLsRRiaveysds 504 (518)
T KOG1830|consen 485 VENDVATILSRRIAVEYSDS 504 (518)
T ss_pred ccchHHHHHHHHHHHHhccC
Confidence 6666 7788888875544
No 17
>KOG1923|consensus
Probab=96.37 E-value=0.0082 Score=76.58 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=4.0
Q ss_pred ceecccCC
Q psy5848 842 LTYNTSTP 849 (1753)
Q Consensus 842 TLWn~~tp 849 (1753)
+=|-...+
T Consensus 374 lnW~alKP 381 (830)
T KOG1923|consen 374 LNWLALKP 381 (830)
T ss_pred ccccccCc
Confidence 34555555
No 18
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.36 E-value=0.052 Score=74.90 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=10.0
Q ss_pred cCceeeccceeeeecccccC
Q psy5848 247 KRKLISLGCAVDVLAGKVDK 266 (1753)
Q Consensus 247 ~kk~vslg~avevl~gr~~~ 266 (1753)
||-|+-.|+--=+|+|.=.|
T Consensus 1232 g~~l~k~g~g~l~ls~~nty 1251 (2039)
T PRK15319 1232 GKSLTKEGAGTLILSGDNDY 1251 (2039)
T ss_pred cceeeccCcceEEeeccccc
Confidence 45555555555555554443
No 19
>KOG1830|consensus
Probab=94.27 E-value=1.3 Score=54.52 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=6.3
Q ss_pred cccccchhHhh
Q psy5848 867 KENVIDNDVLI 877 (1753)
Q Consensus 867 ~~n~l~~~ram 877 (1753)
+.+.+.++++-
T Consensus 481 kr~~v~ndvat 491 (518)
T KOG1830|consen 481 KREAVENDVAT 491 (518)
T ss_pred hhccccchHHH
Confidence 44566666653
No 20
>KOG0132|consensus
Probab=94.09 E-value=0.87 Score=59.20 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=12.1
Q ss_pred HHHhhhhhHHHhhhhhhhhhhh
Q psy5848 60 KALTAGVDSILKKTHDDLEQLK 81 (1753)
Q Consensus 60 ~~lt~gvd~~l~ktq~dl~rik 81 (1753)
+.+|++.-..++-+|+|+-||=
T Consensus 90 ~n~~~tf~~L~~c~~edks~iI 111 (894)
T KOG0132|consen 90 KNFTGTFQNLYECPQEDKSDII 111 (894)
T ss_pred hhHHHHHHHHHhcCHHHHHHHH
Confidence 4455555555555555555553
No 21
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.07 E-value=0.13 Score=71.35 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=5.2
Q ss_pred hccccccc
Q psy5848 879 NAINSRKS 886 (1753)
Q Consensus 879 ~Sl~ae~q 886 (1753)
+++|.+..
T Consensus 1762 ~s~W~Ri~ 1769 (2039)
T PRK15319 1762 GSVWARFK 1769 (2039)
T ss_pred CCeEEEEe
Confidence 57887733
No 22
>KOG4849|consensus
Probab=92.03 E-value=2.4 Score=51.06 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=8.7
Q ss_pred cccchhHhhhhcc
Q psy5848 869 NVIDNDVLIQNAI 881 (1753)
Q Consensus 869 n~l~~~ramq~Sl 881 (1753)
||+.++|++--|-
T Consensus 364 diM~RNraiSSSA 376 (498)
T KOG4849|consen 364 DIMTRNRAISSSA 376 (498)
T ss_pred HHHhhcchhhHHH
Confidence 5888877775443
No 23
>KOG4672|consensus
Probab=91.96 E-value=1.8 Score=53.18 Aligned_cols=18 Identities=6% Similarity=-0.055 Sum_probs=7.5
Q ss_pred CceecccCCCcccccccC
Q psy5848 841 DLTYNTSTPSSRKASITN 858 (1753)
Q Consensus 841 dTLWn~~tps~~e~SEi~ 858 (1753)
.|+-.--+.++.++.++.
T Consensus 407 a~ieskAtaTisakPqi~ 424 (487)
T KOG4672|consen 407 ATIESKATATISAKPQIR 424 (487)
T ss_pred cccccccccceecchhcc
Confidence 344442333444444444
No 24
>KOG1922|consensus
Probab=91.44 E-value=0.83 Score=60.84 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCCCCCceecccCCCcc
Q psy5848 824 PKILDNKEPPIIPRDSSDLTYNTSTPSSR 852 (1753)
Q Consensus 824 p~p~dfl~~pI~P~~~sdTLWn~~tps~~ 852 (1753)
+.=+++.|+.+.+......+|.....+.-
T Consensus 394 ~~lk~l~wdk~~~~~~~~~~w~~~~~~~~ 422 (833)
T KOG1922|consen 394 NKLKPLHWDKTRGSSKRSMVWSEVDSSSS 422 (833)
T ss_pred CCCCCccccccCCCCccCCCCCccccCCc
Confidence 33578999999998888899998887543
No 25
>PRK15313 autotransport protein MisL; Provisional
Probab=90.60 E-value=0.51 Score=62.74 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=32.6
Q ss_pred ceeEEeccCCCCCcCCCCCCC---CchhhhhcccCc---hhhhhcCceeeccceeeeec
Q psy5848 209 DLHLAYIPDSPIEKDDGPDPF---DTSIVDKVIKPE---SEKERKRKLISLGCAVDVLA 261 (1753)
Q Consensus 209 e~~layvp~sp~~~~~g~dpf---dts~~~~vi~~~---~~~~~~kk~vslg~avevl~ 261 (1753)
.+|=|--||.|+-...|+|-. |-++-|-|=-+. ...-+|+.+|-||.-+.++|
T Consensus 138 ~~~~~~~~~~~~~i~~g~~~~i~~~~~~g~gi~a~~~~~~~~~~~~~~i~~g~~~~i~t 196 (955)
T PRK15313 138 RTHGANTPDNPVFIITGDRTRIYVDGQDGDGINAGYNSLGQGWTGSANIYVGDDLYIKT 196 (955)
T ss_pred EecCCCCCCCceEEEECCCeEEEeccccCcccccCcccccccccccceEEEcCceEEEe
Confidence 467778899999778887532 112223333331 11224677999999888876
No 26
>KOG4672|consensus
Probab=90.20 E-value=1.2 Score=54.46 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=5.2
Q ss_pred CchhHHHHHhh
Q psy5848 1025 NDDLFDAFSAK 1035 (1753)
Q Consensus 1025 ~~~~~~~~~~~ 1035 (1753)
..|++.||...
T Consensus 472 kDDaY~~FMkE 482 (487)
T KOG4672|consen 472 KDDAYNAFMKE 482 (487)
T ss_pred chHHHHHHHHH
Confidence 34555555443
No 27
>PRK15313 autotransport protein MisL; Provisional
Probab=88.75 E-value=0.7 Score=61.51 Aligned_cols=25 Identities=20% Similarity=0.001 Sum_probs=11.9
Q ss_pred cCCCCccccccccCCCcceEEeCCC
Q psy5848 576 AHRPDQLIGTKKHSIPKVVAFIEPP 600 (1753)
Q Consensus 576 ~Sr~~~Lig~~sv~~pK~Va~Ie~~ 600 (1753)
.|..+.|+..+..+--..|.+.+..
T Consensus 483 ~S~tDkLvI~G~tsG~T~v~V~N~G 507 (955)
T PRK15313 483 DSETDRLQVLGNTSGNTFVAVNNIG 507 (955)
T ss_pred CCccceEEEeccCCceEEEEEEeCC
Confidence 4444555554444444455544333
No 28
>PHA03378 EBNA-3B; Provisional
Probab=87.99 E-value=4.1 Score=52.59 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=9.2
Q ss_pred CCCchhhhhhhcccccccC
Q psy5848 610 RKPSYQTTSALFYNLRHYP 628 (1753)
Q Consensus 610 ~dP~~q~t~~~f~~ak~yp 628 (1753)
.-|++-+|.++...--+-+
T Consensus 588 ~~p~~~~~~~~~~h~s~~~ 606 (991)
T PHA03378 588 SAPSYAQTPWPVPHPSQTP 606 (991)
T ss_pred cCccccCCCCCCCCccCCC
Confidence 3455555555555433333
No 29
>PHA03378 EBNA-3B; Provisional
Probab=85.88 E-value=39 Score=44.41 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=7.0
Q ss_pred hhhhcccccccCCCC
Q psy5848 617 TSALFYNLRHYPDAS 631 (1753)
Q Consensus 617 t~~~f~~ak~yp~~s 631 (1753)
|+.+-+-+--|.+.+
T Consensus 582 ts~l~s~~p~~~~~~ 596 (991)
T PHA03378 582 TSQLASSAPSYAQTP 596 (991)
T ss_pred hhhhhccCccccCCC
Confidence 454444444444433
No 30
>KOG0307|consensus
Probab=85.86 E-value=22 Score=48.66 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=16.6
Q ss_pred CccccccccCCCC--CCCCCchhhhcccCCcc
Q psy5848 413 PSVLNIQNDLGDP--EDPFDTSFAEKVLPGKC 442 (1753)
Q Consensus 413 ~~~~~~~~~~~~~--~DPFdTsf~~~v~p~~~ 442 (1753)
+.+++.....+.+ .| ||--..+++|=|.-
T Consensus 473 q~~~~~~~~~~~s~~~d-~d~~Is~alitgd~ 503 (1049)
T KOG0307|consen 473 QFVPEPKGSGNISLDSD-IDGLISEALITGDF 503 (1049)
T ss_pred hhcccCCCCcccCCCCc-HHHHHHHHHHhccH
Confidence 4445544442222 33 77777788887765
No 31
>KOG0566|consensus
Probab=84.64 E-value=8.1 Score=51.91 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.4
Q ss_pred CCCchhh---hcccCCccch
Q psy5848 428 PFDTSFA---EKVLPGKCEL 444 (1753)
Q Consensus 428 PFdTsf~---~~v~p~~~eL 444 (1753)
=++|||- -+++.|.++.
T Consensus 670 ~~~TsfCFv~SHlAAG~snv 689 (1080)
T KOG0566|consen 670 YHATSFCFVCSHLAAGQSNV 689 (1080)
T ss_pred eccccEEEEecccccccchH
Confidence 4678874 7888998844
No 32
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.50 E-value=4.1 Score=52.62 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=6.4
Q ss_pred ccccccCCCC
Q psy5848 967 NLFGTSIGKN 976 (1753)
Q Consensus 967 ~~~~~~~~~~ 976 (1753)
||||..+.+-
T Consensus 571 ~if~~~~~~~ 580 (585)
T PRK14950 571 NIFDAQIISV 580 (585)
T ss_pred HHcCCeEEee
Confidence 7777766543
No 33
>KOG1922|consensus
Probab=81.89 E-value=5.3 Score=53.47 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=10.3
Q ss_pred CCCCCceecccCC
Q psy5848 837 RDSSDLTYNTSTP 849 (1753)
Q Consensus 837 ~~~sdTLWn~~tp 849 (1753)
.....+.|+..-+
T Consensus 394 ~~lk~l~wdk~~~ 406 (833)
T KOG1922|consen 394 NKLKPLHWDKTRG 406 (833)
T ss_pred CCCCCccccccCC
Confidence 5677788988877
No 34
>KOG0132|consensus
Probab=81.14 E-value=9 Score=50.53 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=7.4
Q ss_pred ChhhHHHHHHHHh
Q psy5848 549 GKAELKLLEQDLL 561 (1753)
Q Consensus 549 g~~elk~le~el~ 561 (1753)
|+..++.-|.+|-
T Consensus 427 G~i~k~v~e~dL~ 439 (894)
T KOG0132|consen 427 GGIPKNVTEQDLA 439 (894)
T ss_pred ccccchhhHHHHH
Confidence 6665555555554
No 35
>KOG1925|consensus
Probab=75.30 E-value=4.8 Score=50.52 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=7.5
Q ss_pred ceecccCCCc
Q psy5848 842 LTYNTSTPSS 851 (1753)
Q Consensus 842 TLWn~~tps~ 851 (1753)
++||++.+.+
T Consensus 308 t~W~s~D~~~ 317 (817)
T KOG1925|consen 308 TLWASLDPVS 317 (817)
T ss_pred hhhhccCcce
Confidence 8888888743
No 36
>KOG0566|consensus
Probab=75.11 E-value=55 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCCchhhhhcccCCChhhHHHHHH
Q psy5848 534 DDPFDTSIVHSLTAPGKAELKLLEQ 558 (1753)
Q Consensus 534 ~dPfDTS~~~~~~~pg~~elk~le~ 558 (1753)
.|=+||| +.-..|-=+||=+--.
T Consensus 782 Td~YDTS--eK~R~PAWTDRIL~r~ 804 (1080)
T KOG0566|consen 782 TDDYDTS--EKCRTPAWTDRILWRG 804 (1080)
T ss_pred CCccccc--hhccCccchhhheecc
Confidence 4778998 6556677777644333
No 37
>KOG3343|consensus
Probab=72.73 E-value=1.5 Score=48.10 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=40.0
Q ss_pred hhHHHHHHHhhhh--------hHhhhhcchhhHHHHHhhhhcCCccccccccccee
Q psy5848 1315 TKAERITNKLSQF--------AAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQL 1362 (1753)
Q Consensus 1315 ~~~e~L~dYlG~L--------nEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~ 1362 (1753)
+...+|+..|+.+ ..-.+.+|+++|.-.+|||+|.|+.+.|+++..-.
T Consensus 86 ~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~ 141 (175)
T KOG3343|consen 86 MLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQ 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHH
Confidence 4667888887763 45678899999999999999999999999987643
No 38
>KOG1785|consensus
Probab=71.82 E-value=10 Score=46.79 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.5
Q ss_pred cccccCcccccCCcCC
Q psy5848 389 ESLAKSPLKAHNNFEG 404 (1753)
Q Consensus 389 e~l~~~~~~~~~~f~~ 404 (1753)
++..++..+-|..|..
T Consensus 183 ~~fg~k~ivPW~~F~q 198 (563)
T KOG1785|consen 183 KHFGKKTIVPWKTFRQ 198 (563)
T ss_pred HhcCCcccccHHHHHH
Confidence 5566666777776654
No 39
>KOG4462|consensus
Probab=70.95 E-value=1.2e+02 Score=37.55 Aligned_cols=8 Identities=25% Similarity=0.214 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy5848 553 LKLLEQDL 560 (1753)
Q Consensus 553 lk~le~el 560 (1753)
|-.|...+
T Consensus 31 R~ALL~DI 38 (437)
T KOG4462|consen 31 RNALLGDI 38 (437)
T ss_pred hHHHHHHh
Confidence 33343333
No 40
>KOG0307|consensus
Probab=70.01 E-value=82 Score=43.61 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=9.6
Q ss_pred ccccccccCCCCCC
Q psy5848 313 PVKTLLDEDNENLP 326 (1753)
Q Consensus 313 p~~~lld~d~d~~~ 326 (1753)
+.+.|||.+..+-.
T Consensus 387 ~e~~~l~~~~~l~~ 400 (1049)
T KOG0307|consen 387 TEKSLLDRNTALSL 400 (1049)
T ss_pred chhhhcCchhHHHH
Confidence 56778887766653
No 41
>KOG4462|consensus
Probab=66.67 E-value=1.3e+02 Score=37.45 Aligned_cols=13 Identities=69% Similarity=1.569 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q psy5848 644 TPRRPPPPRPVIP 656 (1753)
Q Consensus 644 kprlv~~~rP~~p 656 (1753)
++..+...|+.++
T Consensus 175 spP~ppppR~~~p 187 (437)
T KOG4462|consen 175 SPPTPPPPRPSIP 187 (437)
T ss_pred CCCCCCCCCCCCC
Confidence 4445555565555
No 42
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=64.03 E-value=18 Score=38.47 Aligned_cols=52 Identities=25% Similarity=0.521 Sum_probs=41.6
Q ss_pred CCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeecc
Q psy5848 1219 GPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSE 1281 (1753)
Q Consensus 1219 ~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~ 1281 (1753)
+.||=|+.-- .+..|+.-|-|| |.+-|-||++.+..++|||++|.--.+|..
T Consensus 2 kEGWmVHyT~-------~d~~rKRhYWrL----DsK~Itlf~~e~~skyyKeIPLsEIl~V~~ 53 (117)
T cd01239 2 KEGWMVHYTS-------SDNRRKKHYWRL----DSKAITLYQEESGSRYYKEIPLAEILSVSS 53 (117)
T ss_pred ccceEEEEec-------CccceeeeEEEe----cCCeEEEEEcCCCCeeeEEeehHHheEEec
Confidence 5789776533 345788888899 456899999999999999999988877763
No 43
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=61.82 E-value=6.1 Score=53.39 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.6
Q ss_pred CCeEEEEEee
Q psy5848 1291 GKIFTVKLQF 1300 (1753)
Q Consensus 1291 gKIHtVkl~~ 1300 (1753)
.++-.+||.+
T Consensus 541 KgLtYLhLDy 550 (2365)
T COG5178 541 KGLTYLHLDY 550 (2365)
T ss_pred cCCeEEEeec
Confidence 3455566665
No 44
>KOG0260|consensus
Probab=59.70 E-value=2.7e+02 Score=39.49 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=16.6
Q ss_pred chhHHHHhhhcccccCcccccCCcCCCCCC
Q psy5848 379 ETDEFAALATESLAKSPLKAHNNFEGIKPQ 408 (1753)
Q Consensus 379 ~~~ef~~~aae~l~~~~~~~~~~f~~~~~~ 408 (1753)
-+.|.|++----|+--.+..|--+-++-=+
T Consensus 1117 k~~e~ak~v~~~le~ttl~~vt~~t~i~yd 1146 (1605)
T KOG0260|consen 1117 KDNEWAKLVQCCLEHTTLKDVTRATEIYYD 1146 (1605)
T ss_pred cchHHHHHHhhhcccccHHhhhccCcceec
Confidence 345555555445555556666666665433
No 45
>PRK09752 adhesin; Provisional
Probab=58.47 E-value=8.6 Score=52.92 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.2
Q ss_pred HHHHHHHHhh
Q psy5848 55 EWQKFKALTA 64 (1753)
Q Consensus 55 ew~kf~~lt~ 64 (1753)
.|--|+..++
T Consensus 63 ~~~~~~~~~~ 72 (1250)
T PRK09752 63 QWLVFSDMTN 72 (1250)
T ss_pred cEEEeccccc
Confidence 4555655553
No 46
>KOG0260|consensus
Probab=57.98 E-value=2.7e+02 Score=39.55 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=13.7
Q ss_pred HhhhhhHHHhhhhhhhhhhhc
Q psy5848 62 LTAGVDSILKKTHDDLEQLKQ 82 (1753)
Q Consensus 62 lt~gvd~~l~ktq~dl~rik~ 82 (1753)
+..-|..||+...++-.++-+
T Consensus 712 fe~~v~~vlndArd~~gssA~ 732 (1605)
T KOG0260|consen 712 FENKVNRVLNDARDKSGSSAQ 732 (1605)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
Confidence 344577777777777766543
No 47
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.86 E-value=8.2 Score=52.32 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=7.1
Q ss_pred Ccccccccccceee
Q psy5848 1350 GLPVEHAPQTSQLF 1363 (1753)
Q Consensus 1350 GyPq~TepniLq~L 1363 (1753)
|+-|.-.--+||.|
T Consensus 728 ~irq~k~rtiLQHl 741 (2365)
T COG5178 728 GIRQTKVRTILQHL 741 (2365)
T ss_pred hhhhhHHHHHHHHH
Confidence 45455554555544
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=55.90 E-value=40 Score=34.31 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCceeeeeccccccccccccceEEEEEEEecC---CcceEEEeccCCCCCCCcccCCCCceee
Q psy5848 1220 PGWEMHLRQPNKKKITGQRFWKKVFVKIVYHG---EKPVVHLYNKADDKDPFQELPLEPCYSV 1279 (1753)
Q Consensus 1220 ~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g---~~~~lql~~ek~~~~Pf~E~~Lq~~~~l 1279 (1753)
.|| +.+.+.+++ ++.+-|++-|.-|...+ +.-.|..|....+.+|-..+.|..+..+
T Consensus 2 eGw--L~K~~~~~~-~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v 61 (108)
T cd01266 2 EGW--LKKSPPYKL-LFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQV 61 (108)
T ss_pred cee--eeeCCcccc-ccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEE
Confidence 366 345566666 55789999999998532 1223666666677999999999996655
No 49
>PRK09752 adhesin; Provisional
Probab=53.34 E-value=12 Score=51.59 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=4.5
Q ss_pred CCCcccccc
Q psy5848 327 DSPVDVADT 335 (1753)
Q Consensus 327 ~~pid~~~~ 335 (1753)
+-|.||.-+
T Consensus 374 ~~~~~~~~~ 382 (1250)
T PRK09752 374 DDPQDCYGL 382 (1250)
T ss_pred CCchhhcee
Confidence 445555543
No 50
>KOG4590|consensus
Probab=51.23 E-value=55 Score=41.30 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=9.3
Q ss_pred cCCCCccccccccCCCcce
Q psy5848 576 AHRPDQLIGTKKHSIPKVV 594 (1753)
Q Consensus 576 ~Sr~~~Lig~~sv~~pK~V 594 (1753)
.++-|...+...-+..++-
T Consensus 6 ~~k~W~p~g~g~~~~s~V~ 24 (409)
T KOG4590|consen 6 SQKGWLPAGGGGAALSKVR 24 (409)
T ss_pred cccccccccccCcccceeE
Confidence 3455555554444444443
No 51
>PF15449 Retinal: Retinal protein
Probab=50.31 E-value=3.9e+02 Score=37.71 Aligned_cols=29 Identities=7% Similarity=0.109 Sum_probs=18.8
Q ss_pred cccccccccccccccCCCceeeeeccccc
Q psy5848 881 INSRKSSQDVVTSRKSSQDIQRITSASQS 909 (1753)
Q Consensus 881 l~ae~q~~~~vt~~~tsp~idmsele~l~ 909 (1753)
+|.+.|......+.|-.|||=.+-.+-+.
T Consensus 1194 ~~~dsqRr~al~AlnPqPFVRRtaSDRrp 1222 (1287)
T PF15449_consen 1194 PRGDSQRRTALCALNPQPFVRRTASDRRP 1222 (1287)
T ss_pred ccccccccccccccCCCcccccccccCCC
Confidence 56667766667777777777665555533
No 52
>KOG0119|consensus
Probab=47.87 E-value=3.4e+02 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=15.0
Q ss_pred Cchhhhccc-CCccchhhHHHhh
Q psy5848 430 DTSFAEKVL-PGKCELKLIENEI 451 (1753)
Q Consensus 430 dTsf~~~v~-p~~~eLk~iE~el 451 (1753)
|-+||-=|+ |-..-||.||+|-
T Consensus 151 d~NFvGLiiGPRG~TqK~lE~et 173 (554)
T KOG0119|consen 151 DINFVGLIIGPRGNTQKRLERET 173 (554)
T ss_pred CcceeEEEecCCccHHHHHHHHh
Confidence 467886666 5444588888874
No 53
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=45.24 E-value=1.8e+02 Score=39.42 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=6.6
Q ss_pred hhhhhhhccc
Q psy5848 614 YQTTSALFYN 623 (1753)
Q Consensus 614 ~q~t~~~f~~ 623 (1753)
|--+|-.|..
T Consensus 530 W~RGQS~~pA 539 (759)
T PF05518_consen 530 WVRGQSPFPA 539 (759)
T ss_pred hhcCCCCCCC
Confidence 6666666665
No 54
>PF15324 TALPID3: Hedgehog signalling target
Probab=42.85 E-value=2.4e+02 Score=39.53 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=12.7
Q ss_pred hhhcccCchhhhhcCceeeccceeeeeccc
Q psy5848 234 VDKVIKPESEKERKRKLISLGCAVDVLAGK 263 (1753)
Q Consensus 234 ~~~vi~~~~~~~~~kk~vslg~avevl~gr 263 (1753)
.=|||.++ ||-|+=|+.---+--.+|
T Consensus 569 rpkvie~V----kGtkvks~rTQT~~~~~~ 594 (1252)
T PF15324_consen 569 RPKVIERV----KGTKVKSIRTQTDFHATK 594 (1252)
T ss_pred ccchhhhc----ccceeecccccccccccc
Confidence 34566554 455555555444433333
No 55
>KOG0162|consensus
Probab=41.33 E-value=2.5e+02 Score=37.96 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHH
Q psy5848 23 EFDAEELAKYRRE 35 (1753)
Q Consensus 23 ~f~~eele~yrre 35 (1753)
.||+.||+-|.-.
T Consensus 66 ~ft~~~~~~YqG~ 78 (1106)
T KOG0162|consen 66 YFTEKEMELYQGA 78 (1106)
T ss_pred cchHHHHHHhhch
Confidence 5666666666543
No 56
>KOG2893|consensus
Probab=39.93 E-value=5.3e+02 Score=30.87 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHhhhccccccc--ccccc-cCCCCcccc---ccccCCCcceEEe
Q psy5848 558 QDLLSETKTNEIK--TEEKV-AHRPDQLIG---TKKHSIPKVVAFI 597 (1753)
Q Consensus 558 ~el~~~~~~~~~~--~~e~~-~Sr~~~Lig---~~sv~~pK~Va~I 597 (1753)
.-|+++|++|-.| |--+. -|-+-+-|- ++.-.|.|+.++|
T Consensus 24 kiliqhqkakhfkchichkkl~sgpglsihcmqvhketid~ip~av 69 (341)
T KOG2893|consen 24 KILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAV 69 (341)
T ss_pred hhhhhhhhhccceeeeehhhhccCCCceeehhhhhhhhhhcccccc
Confidence 3356888888776 33332 333333333 5666677777765
No 57
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.85 E-value=89 Score=33.12 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=35.6
Q ss_pred ccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcc-cCCCCceeecccc-ccccccCCCeEEEEEee
Q psy5848 1230 NKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQE-LPLEPCYSVSEIG-AQQYDNFGKIFTVKLQF 1300 (1753)
Q Consensus 1230 ~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E-~~Lq~~~~lS~~~-lq~yd~~gKIHtVkl~~ 1300 (1753)
.||--.+.|.|++.|+-|.. .+|-+|........=+. -.+....+|..-. --.+|...|-|.++|+.
T Consensus 16 ~kk~~~~~R~Wk~~y~vL~g----~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~ 84 (117)
T cd01230 16 CRKTPFGKRSWKMFYGILRG----LVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRT 84 (117)
T ss_pred CccCCCCCCcceEEEEEEEC----CEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEc
Confidence 45544468999999999862 37888877542111111 1233344444433 22344445555555543
No 58
>KOG2391|consensus
Probab=38.70 E-value=52 Score=40.50 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.1
Q ss_pred cchhHhhhhccc
Q psy5848 871 IDNDVLIQNAIN 882 (1753)
Q Consensus 871 l~~~ramq~Sl~ 882 (1753)
+++..++|.+|.
T Consensus 227 me~~~aeq~slk 238 (365)
T KOG2391|consen 227 MERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 59
>KOG4590|consensus
Probab=37.82 E-value=71 Score=40.35 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=5.1
Q ss_pred eCCCCcccccccC
Q psy5848 597 IEPPGVNGTEENS 609 (1753)
Q Consensus 597 Ie~~~~~~~~~~~ 609 (1753)
|+..-+.++.-|-
T Consensus 49 lnC~I~kGlkYnk 61 (409)
T KOG4590|consen 49 LNCLILKGLKYNK 61 (409)
T ss_pred cccccccCcceee
Confidence 3333344444443
No 60
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.15 E-value=48 Score=35.17 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=29.9
Q ss_pred eeeccccccccccccceEEEEEEEecCCcceEEEeccCCC---CCCCcccCC
Q psy5848 1225 HLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADD---KDPFQELPL 1273 (1753)
Q Consensus 1225 ~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~---~~Pf~E~~L 1273 (1753)
+|++|.+-+.-+.+-|...||=|... =|-+|+...+ ..|+++|.|
T Consensus 5 wlsvP~~~~~~~k~gW~r~yvVv~~~----Kl~lYd~e~~~~~~~p~~vldl 52 (112)
T cd01242 5 WLSLPNRTNKSRKPGWKKQYVVVSSR----KILFYNDEQDKENSTPSMILDI 52 (112)
T ss_pred eEEccCCCCccccCCceEEEEEEeCC----EEEEEecCccccCCCcEEEEEc
Confidence 48888776655556799999999754 3667775333 346765443
No 61
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=37.09 E-value=2.7e+02 Score=38.34 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=3.0
Q ss_pred ceecccC
Q psy5848 842 LTYNTST 848 (1753)
Q Consensus 842 TLWn~~t 848 (1753)
..|....
T Consensus 514 ~~W~~Il 520 (824)
T PRK07764 514 ERWPEIL 520 (824)
T ss_pred HHHHHHH
Confidence 3354444
No 62
>KOG0119|consensus
Probab=35.08 E-value=4.2e+02 Score=34.61 Aligned_cols=30 Identities=20% Similarity=-0.005 Sum_probs=12.9
Q ss_pred CCchhhhcccCCccchhhHHHhhcCCCccc
Q psy5848 429 FDTSFAEKVLPGKCELKLIENEILGKDESE 458 (1753)
Q Consensus 429 FdTsf~~~v~p~~~eLk~iE~ell~~~~df 458 (1753)
|.|.-.-...-.--|+.+|=.|+|+.--.|
T Consensus 97 ~ntRe~R~r~~Le~er~e~I~~~lk~nP~f 126 (554)
T KOG0119|consen 97 LNTREQRARKKLEDERHEIIEEILKLNPGF 126 (554)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 444444333333333333335566654444
No 63
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=34.61 E-value=1.6e+02 Score=26.88 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=28.3
Q ss_pred ccccceEEEEEEEecCCcceEEEeccCCCC---CCCcccCCCCceeecc
Q psy5848 1236 GQRFWKKVFVKIVYHGEKPVVHLYNKADDK---DPFQELPLEPCYSVSE 1281 (1753)
Q Consensus 1236 ~~R~W~pi~vrl~~~g~~~~lql~~ek~~~---~Pf~E~~Lq~~~~lS~ 1281 (1753)
+...|++.|+.|.. .+|.+|..+... .+-..+.|..+ +++.
T Consensus 14 ~~~~~~~~~~~L~~----~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~ 57 (102)
T smart00233 14 KKKSWKKRYFVLFN----STLLYYKSEKAKKDYKPKGSIDLSGI-TVRE 57 (102)
T ss_pred ccCCceEEEEEEEC----CEEEEEeCCCccccCCCceEEECCcC-EEEe
Confidence 56789999999974 489999887663 44444555554 4443
No 64
>KOG0935|consensus
Probab=33.78 E-value=18 Score=38.60 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=39.1
Q ss_pred hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccc
Q psy5848 1316 KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQ 1358 (1753)
Q Consensus 1316 ~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Tepn 1358 (1753)
-+|+|-.|||.+-|-.|-=||--||-++|||+=.|-.+.|+-.
T Consensus 88 FVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~ 130 (143)
T KOG0935|consen 88 FVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKT 130 (143)
T ss_pred HHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHH
Confidence 3589999999999999999999999999999999999988743
No 65
>KOG2675|consensus
Probab=32.57 E-value=46 Score=42.02 Aligned_cols=47 Identities=23% Similarity=0.148 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHhhhccccccc--ccccccCCCCccccccccC--CCcceE
Q psy5848 547 APGKAELKLLEQDLLSETKTNEIK--TEEKVAHRPDQLIGTKKHS--IPKVVA 595 (1753)
Q Consensus 547 ~pg~~elk~le~el~~~~~~~~~~--~~e~~~Sr~~~Lig~~sv~--~pK~Va 595 (1753)
.|+.-++..|.+-+... ..+|. +++.|.|+-+|-+.+-+.+ ..+-||
T Consensus 101 KPds~elad~LkPI~e~--i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVa 151 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEE--IGEINNFKEKNRKSPFFNHLSAVSESIPALGWVA 151 (480)
T ss_pred CCChHHHHHHhhhHHHh--hhHHhhhhhcccCchHHHHHHHHHhhcccceeEe
Confidence 44444444444444433 11222 5677888888888744444 444455
No 66
>KOG4307|consensus
Probab=32.40 E-value=1.4e+02 Score=39.99 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=13.7
Q ss_pred ccccccccCccccccccee
Q psy5848 461 QSERVKFDGKTIKYSGITI 479 (1753)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (1753)
-+++.+|++-+|++-.|||
T Consensus 17 ~DIR~FFSGL~IPdGgVHI 35 (944)
T KOG4307|consen 17 SDIRTFFSGLKIPDGGVHI 35 (944)
T ss_pred hHHHHhhcccccCCCceEE
Confidence 3445568888888888887
No 67
>KOG1985|consensus
Probab=31.57 E-value=8.4e+02 Score=33.86 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.0
Q ss_pred ccccCCCCceeeeeccccccccccccceEEEEEEE
Q psy5848 1214 RIKYDGPGWEMHLRQPNKKKITGQRFWKKVFVKIV 1248 (1753)
Q Consensus 1214 ~~~~~~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~ 1248 (1753)
|-+-++-||+-+|||=--|-+--+.+.|--|+|=.
T Consensus 528 r~Ltr~~~feaVmRiR~S~gl~~~~f~GnFF~RSt 562 (887)
T KOG1985|consen 528 RYLTRKIGFEAVMRIRCSTGLRMSSFFGNFFVRST 562 (887)
T ss_pred HHhhhhhhhheeEEeeccccccccceecccccCcH
Confidence 44446999999999977777767789999999954
No 68
>KOG1984|consensus
Probab=30.79 E-value=1.7e+03 Score=31.36 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=5.5
Q ss_pred CCCCceeeeec
Q psy5848 1218 DGPGWEMHLRQ 1228 (1753)
Q Consensus 1218 ~~~gW~~~lR~ 1228 (1753)
+.-|+..|||.
T Consensus 656 k~~gf~a~mrv 666 (1007)
T KOG1984|consen 656 KKQGFDAVMRV 666 (1007)
T ss_pred cceeeeeEEEE
Confidence 34555555554
No 69
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=30.03 E-value=1.9e+02 Score=37.35 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=10.4
Q ss_pred CCCCCchhhhcccCCccc
Q psy5848 426 EDPFDTSFAEKVLPGKCE 443 (1753)
Q Consensus 426 ~DPFdTsf~~~v~p~~~e 443 (1753)
.+.|.+=|+-++-+..+|
T Consensus 175 ~~~~~~l~V~nl~~~~te 192 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNE 192 (562)
T ss_pred ccCCCeEEEeCCCCcCCH
Confidence 345666666666555553
No 70
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=29.41 E-value=30 Score=37.91 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCccccccccc
Q psy5848 1317 AERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQT 1359 (1753)
Q Consensus 1317 ~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Tepni 1359 (1753)
+|.|--|||.+.|--|-=||.-||-+||||+-.|-.+.++.+.
T Consensus 88 VE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~ 130 (152)
T COG5030 88 VEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNE 130 (152)
T ss_pred HHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHH
Confidence 3667778899999999999999999999999999999988653
No 71
>PF15324 TALPID3: Hedgehog signalling target
Probab=28.60 E-value=1.8e+03 Score=31.75 Aligned_cols=9 Identities=33% Similarity=0.379 Sum_probs=4.9
Q ss_pred HHHHHHhhh
Q psy5848 555 LLEQDLLSE 563 (1753)
Q Consensus 555 ~le~el~~~ 563 (1753)
.||..|++-
T Consensus 826 tLEn~li~W 834 (1252)
T PF15324_consen 826 TLENSLIQW 834 (1252)
T ss_pred HHHHHHHHH
Confidence 466666543
No 72
>KOG0559|consensus
Probab=27.14 E-value=1.3e+02 Score=37.59 Aligned_cols=28 Identities=0% Similarity=0.016 Sum_probs=20.0
Q ss_pred CCCceeeeeccccccccccccCCCccccccc
Q psy5848 896 SSQDIQRITSASQSRKASNEVAPDVFSQQIT 926 (1753)
Q Consensus 896 tsp~idmsele~l~~~s~~E~nPf~~~~~i~ 926 (1753)
|-.++|||.+-.|-++-..+ |+-|.-+-
T Consensus 256 TFNEvDMS~lm~mRk~ykda---f~kKhGvK 283 (457)
T KOG0559|consen 256 TFNEVDMSNLMEMRKQYKDA---FLKKHGVK 283 (457)
T ss_pred hhhhhhHHHHHHHHHHHHHH---HHHHhCce
Confidence 45688998888877777777 76555553
No 73
>KOG0162|consensus
Probab=27.08 E-value=5.1e+02 Score=35.32 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.2
Q ss_pred hhccccccc
Q psy5848 619 ALFYNLRHY 627 (1753)
Q Consensus 619 ~~f~~ak~y 627 (1753)
+.|.+++-|
T Consensus 900 ~~~~~~~~~ 908 (1106)
T KOG0162|consen 900 IDFEDLKVL 908 (1106)
T ss_pred cCccchhhh
Confidence 344445544
No 74
>KOG2893|consensus
Probab=26.31 E-value=4.2e+02 Score=31.68 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=7.9
Q ss_pred chhhcccccccccccc
Q psy5848 663 DLILTVTGHMEATSSH 678 (1753)
Q Consensus 663 dLil~vqG~~~~tSSq 678 (1753)
|+.+..-|...+.+..
T Consensus 74 ~i~veiygmqgip~~~ 89 (341)
T KOG2893|consen 74 NIHVEIYGMQGIPSGA 89 (341)
T ss_pred ceeEEEeeccCCCchh
Confidence 4444555555555433
No 75
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=26.05 E-value=2.1e+02 Score=36.91 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=4.9
Q ss_pred ccccccccc
Q psy5848 107 EQAWTEFEE 115 (1753)
Q Consensus 107 ~~~w~~f~~ 115 (1753)
.-++|+|..
T Consensus 43 G~afV~F~~ 51 (562)
T TIGR01628 43 GYGYVNFQN 51 (562)
T ss_pred eEEEEEECC
Confidence 445565554
No 76
>KOG1925|consensus
Probab=25.97 E-value=73 Score=40.79 Aligned_cols=8 Identities=0% Similarity=-0.188 Sum_probs=4.6
Q ss_pred hhhccccc
Q psy5848 877 IQNAINSR 884 (1753)
Q Consensus 877 mq~Sl~ae 884 (1753)
+.||+|+-
T Consensus 305 ~~~t~W~s 312 (817)
T KOG1925|consen 305 PCATLWAS 312 (817)
T ss_pred ccchhhhc
Confidence 34677754
No 77
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=25.92 E-value=1.8e+02 Score=27.38 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=40.6
Q ss_pred cccccceEEEEEEEecCCcceEEEeccCC---CCCCCcccCCCCceeecccccc-ccccCCCeEEEEEee
Q psy5848 1235 TGQRFWKKVFVKIVYHGEKPVVHLYNKAD---DKDPFQELPLEPCYSVSEIGAQ-QYDNFGKIFTVKLQF 1300 (1753)
Q Consensus 1235 ~~~R~W~pi~vrl~~~g~~~~lql~~ek~---~~~Pf~E~~Lq~~~~lS~~~lq-~yd~~gKIHtVkl~~ 1300 (1753)
-..+.|++.|+.|.. ..|-+|.... ...|...+.|..+ .|...... .-.....-|.+.|.+
T Consensus 12 ~~~~~wk~r~~vL~~----~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~ 76 (104)
T PF00169_consen 12 SSRKKWKKRYFVLRD----SYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITT 76 (104)
T ss_dssp SSSSSEEEEEEEEET----TEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEE
T ss_pred CCCCCeEEEEEEEEC----CEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEe
Confidence 456799999999974 3788888877 5788888888777 55543332 113344555555544
No 78
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=24.79 E-value=1.2e+02 Score=31.71 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=20.2
Q ss_pred eeccccccccccccceEEEEEEEecCCcceEEEecc
Q psy5848 1226 LRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNK 1261 (1753)
Q Consensus 1226 lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~e 1261 (1753)
+--..||...+.|.|+.+|+-|. + .+|.||..
T Consensus 12 ~~~~gkk~~~~~R~Wk~~y~vL~-g---~~L~~~k~ 43 (119)
T PF15410_consen 12 LESGGKKASRSKRSWKQVYAVLQ-G---GQLYFYKD 43 (119)
T ss_dssp EECTTCC---S---EEEEEEEEE-T---TEEEEESS
T ss_pred EcCCCCCcCCCCCCccEEeEEEE-C---CEEEEEcc
Confidence 34456776669999999999995 2 38999988
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.21 E-value=3.7e+02 Score=37.10 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=3.5
Q ss_pred hhcccccCc
Q psy5848 387 ATESLAKSP 395 (1753)
Q Consensus 387 aae~l~~~~ 395 (1753)
|+..|-|-.
T Consensus 136 a~NaLLK~L 144 (824)
T PRK07764 136 GFNALLKIV 144 (824)
T ss_pred HHHHHHHHH
Confidence 334443333
No 80
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=24.06 E-value=2.5e+02 Score=39.48 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=38.4
Q ss_pred EEeecCCC---eEEEEeccccccccc-cccccccccccccccEEecccccc-------ccccccccccCceEEEeCCCCc
Q psy5848 1432 LGFLSGMP---DIELGVNDLVRQGKE-VVGRHDIIPVVTEEWIRLEGVEFH-------SCVQQDEYEKGRTIKFKPPDAC 1500 (1753)
Q Consensus 1432 kSFLSGmP---ec~LgLND~~l~gke-vvGr~di~P~~~~~~I~LdDcsFH-------qCVdLdeFE~dRvISFIPPDGe 1500 (1753)
.|.|-|-+ .|.|..|+..-++-. ..+|.. ...+.-.--+.-+.|| .||+..++..+-..+|.=+ -
T Consensus 671 la~l~~y~tGGtIhvivNNqiGftT~p~~~Rss--~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~d--V 746 (1228)
T PRK12270 671 LSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSS--EYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKD--V 746 (1228)
T ss_pred HHhccCCCCCCeEEEEEecCcccccCccccccc--hhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCC--e
Confidence 35666777 777877776432211 011111 0000001124455566 4666555554444444322 3
Q ss_pred eeeeEeEEecCCC
Q psy5848 1501 YIELMRFRVRPPR 1513 (1753)
Q Consensus 1501 FfeLMrYRVs~~~ 1513 (1753)
++.|+.||-..++
T Consensus 747 vIdlvcYRrrGHN 759 (1228)
T PRK12270 747 VIDLVCYRRRGHN 759 (1228)
T ss_pred EEEEEEEeecCCC
Confidence 4589999998763
No 81
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=23.87 E-value=1.4e+02 Score=36.61 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.9
Q ss_pred cccccccc
Q psy5848 880 AINSRKSS 887 (1753)
Q Consensus 880 Sl~ae~q~ 887 (1753)
=||+++-.
T Consensus 253 LlWfRmP~ 260 (407)
T PF04625_consen 253 LLWFRMPT 260 (407)
T ss_pred eeEEeccc
Confidence 35655433
No 82
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=23.34 E-value=27 Score=42.47 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=3.7
Q ss_pred CcccccccCCC
Q psy5848 601 GVNGTEENSRK 611 (1753)
Q Consensus 601 ~~~~~~~~~~d 611 (1753)
|+.++|--..+
T Consensus 139 gi~aLgWV~v~ 149 (312)
T PF01213_consen 139 GIPALGWVAVE 149 (312)
T ss_dssp GGGGGGGGG--
T ss_pred hhheeeeeeeC
Confidence 33444443333
No 83
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=23.16 E-value=61 Score=41.35 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=20.0
Q ss_pred cEEecccccc--ccccccccccCceEEEe---C-CCCceeeeE
Q psy5848 1469 WIRLEGVEFH--SCVQQDEYEKGRTIKFK---P-PDACYIELM 1505 (1753)
Q Consensus 1469 ~I~LdDcsFH--qCVdLdeFE~dRvISFI---P-PDGeFfeLM 1505 (1753)
-++|.+|+|. |||.- +-+|||. . .||+| -||
T Consensus 163 D~e~N~c~F~~~q~vEr-----D~~~SFhl~~~~~~~~f-~l~ 199 (465)
T PF01690_consen 163 DLELNGCHFNDGQVVER-----DGTISFHLEATGDDASF-FLV 199 (465)
T ss_pred CceecCcccccCceEEe-----eeeEEEEEEecCCCceE-EEe
Confidence 4678888887 46654 4456664 4 78888 555
No 84
>KOG2422|consensus
Probab=22.34 E-value=52 Score=42.93 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHH-HHHHHhccccCCCC--CchHHHHHHHH
Q psy5848 27 EELAKYRREHQ-AKEEEAGAEASSEG--KSDEWQKFKAL 62 (1753)
Q Consensus 27 eele~yrre~~-~~~e~~~~~~~~~~--~~~ew~kf~~l 62 (1753)
.++=+|+.-++ +++|..+..++.+. .+--|--+-++
T Consensus 119 ~a~l~~~k~K~d~~~e~~~~t~s~~~~~~~q~~v~~i~~ 157 (665)
T KOG2422|consen 119 LAILKYGKTKNDDKNEEGFFTASLEEEASSQDWVLEIDL 157 (665)
T ss_pred HHHHHhhccchhhhhcccCCcccchhccccchhHHHHhh
Confidence 34557777776 45555444444333 34556655543
No 85
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=21.48 E-value=70 Score=40.89 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q psy5848 833 PIIPRDSSD 841 (1753)
Q Consensus 833 pI~P~~~sd 841 (1753)
.|.-|++.+
T Consensus 43 ~I~tr~n~d 51 (465)
T PF01690_consen 43 KISTRENDD 51 (465)
T ss_pred eeecccccc
Confidence 455555544
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.44 E-value=6.2e+02 Score=34.53 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=8.1
Q ss_pred hhhhhhhcccccccC
Q psy5848 614 YQTTSALFYNLRHYP 628 (1753)
Q Consensus 614 ~q~t~~~f~~ak~yp 628 (1753)
||...++-.+++.-+
T Consensus 333 ~q~~~~~~~el~~a~ 347 (700)
T PRK12323 333 YQIANLGRSELALAP 347 (700)
T ss_pred HHHHHHHHHHhccCC
Confidence 666555555544433
No 87
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=21.37 E-value=1.5e+02 Score=35.75 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.1
Q ss_pred ceecccCC
Q psy5848 842 LTYNTSTP 849 (1753)
Q Consensus 842 TLWn~~tp 849 (1753)
++|..+.+
T Consensus 207 tf~r~p~p 214 (274)
T PLN02983 207 TFYRSPAP 214 (274)
T ss_pred EEEeccCC
Confidence 55665443
No 88
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=20.83 E-value=2e+02 Score=28.34 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=39.9
Q ss_pred ccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEEe
Q psy5848 1236 GQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQ 1299 (1753)
Q Consensus 1236 ~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl~ 1299 (1753)
..|.|++-|+-|.. +.|-+|..+++++|-..+.|..+ .+... ....|-|.++|.
T Consensus 16 ~~k~WkkrwfvL~~----~~L~yyk~~~~~~~~~~I~L~~~-~v~~~-----~~~~k~~~F~I~ 69 (96)
T cd01260 16 MGQKWARRWFVLKG----TTLYWYRSKQDEKAEGLIFLSGF-TIESA-----KEVKKKYAFKVC 69 (96)
T ss_pred cccCceeEEEEEEC----CEEEEECCCCCCccceEEEccCC-EEEEc-----hhcCCceEEEEC
Confidence 45799999999972 38888988899999888888875 55432 123366777775
No 89
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.03 E-value=2.7e+02 Score=37.20 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=7.9
Q ss_pred ceeeeeccccccccccc
Q psy5848 899 DIQRITSASQSRKASNE 915 (1753)
Q Consensus 899 ~idmsele~l~~~s~~E 915 (1753)
-...|++-+++.+.+++
T Consensus 527 ~l~~~~~~~~~~~~~~~ 543 (620)
T PRK14954 527 HLRSCELTSCSPHGVVV 543 (620)
T ss_pred HHhcCcccccCCCCeEE
Confidence 34455555555334433
Done!