Query psy5848
Match_columns 1753
No_of_seqs 460 out of 892
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:37:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 5.9E-67 2E-71 618.3 35.7 407 1249-1714 9-434 (435)
2 1w63_M Adaptor-related protein 100.0 2.3E-66 7.8E-71 611.4 33.9 364 1286-1715 48-422 (423)
3 1i31_A Clathrin coat assembly 100.0 3.3E-61 1.1E-65 549.5 29.6 307 1353-1714 1-313 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.5E-58 5.1E-63 517.7 25.8 264 1389-1715 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 7.1E-58 2.4E-62 534.9 30.7 315 1341-1714 63-384 (385)
6 3l81_A AP-4 complex subunit MU 100.0 3.7E-57 1.3E-61 514.2 27.8 270 1387-1714 22-300 (301)
7 1w63_Q Adapter-related protein 98.6 1.5E-08 5.1E-13 106.2 3.5 79 1286-1364 48-135 (158)
8 2vgl_S AP-2 complex subunit si 98.5 2.4E-08 8.1E-13 102.7 3.2 79 1286-1364 48-136 (142)
9 3tjz_C Coatomer subunit zeta-1 98.4 1.1E-07 3.7E-12 99.7 4.0 78 1286-1363 58-145 (153)
10 3g9h_A Suppressor of yeast pro 98.1 0.00069 2.3E-08 78.7 26.6 215 1399-1691 67-302 (328)
11 3h0g_A DNA-directed RNA polyme 90.4 0.051 1.7E-06 74.7 0.0 15 247-261 1057-1071(1752)
12 3h0g_A DNA-directed RNA polyme 89.7 0.063 2.1E-06 73.9 0.0 9 444-452 1266-1274(1752)
13 2h8h_A Proto-oncogene tyrosine 53.6 2.8 9.4E-05 50.9 0.0 13 1235-1247 275-287 (535)
14 2h8h_A Proto-oncogene tyrosine 53.0 2.9 9.8E-05 50.8 0.0 6 1243-1248 294-299 (535)
15 2coa_A Protein kinase C, D2 ty 50.3 25 0.00084 36.4 6.3 72 1218-1300 9-81 (125)
16 2d9z_A Protein kinase C, NU ty 44.0 33 0.0011 35.7 6.1 53 1219-1282 10-62 (129)
17 2coc_A FYVE, rhogef and PH dom 36.9 49 0.0017 32.8 6.0 60 1237-1300 20-79 (112)
18 2lid_A Vitellogenin; lipid tra 36.1 11 0.00038 30.3 0.0 13 82-94 21-33 (35)
19 3cxb_B Pleckstrin homology dom 28.4 96 0.0033 30.0 6.4 57 1236-1300 16-73 (112)
20 1twf_A B220, DNA-directed RNA 27.9 13 0.00043 52.1 0.0 13 249-261 1056-1068(1733)
21 1wg7_A Dedicator of cytokinesi 27.7 1.4E+02 0.0049 29.7 7.7 63 1216-1280 17-82 (150)
22 2dn6_A KIAA0640 protein; PH do 26.6 71 0.0024 30.1 5.0 54 1237-1298 21-74 (115)
23 1pls_A Pleckstrin homology dom 26.2 1.3E+02 0.0043 28.4 6.7 55 1237-1299 18-72 (113)
24 2rov_A RHO-associated protein 25.2 59 0.002 32.4 4.3 51 1225-1281 6-60 (117)
25 1wgq_A FYVE, rhogef and PH dom 24.7 1.3E+02 0.0044 28.3 6.4 41 1237-1281 21-61 (109)
26 2dkp_A Pleckstrin homology dom 24.6 1.4E+02 0.0047 28.6 6.7 69 1218-1299 22-90 (128)
27 2yry_A Pleckstrin homology dom 23.7 1.2E+02 0.004 28.9 5.9 55 1237-1298 36-90 (122)
28 1ux5_A BNI1 protein; structura 22.8 3.6 0.00012 49.0 -5.9 111 826-949 9-143 (411)
29 2d9y_A Pleckstrin homology dom 22.3 1.5E+02 0.0051 27.9 6.3 55 1237-1298 25-79 (117)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=5.9e-67 Score=618.34 Aligned_cols=407 Identities=19% Similarity=0.295 Sum_probs=300.2
Q ss_pred ecCCcceEEEeccCCCC----CCCcccCCCCceeeccccccccccCCCeEEEEEee----EEEeecCCCCCCcch-----
Q psy5848 1249 YHGEKPVVHLYNKADDK----DPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQF----IFYKERPGVRPGQVT----- 1315 (1753)
Q Consensus 1249 ~~g~~~~lql~~ek~~~----~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~----- 1315 (1753)
...++.+|.-||..... +-|....+... +.+.-.+=..+.+.+|+++| ++...+...-+-++.
T Consensus 9 ~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~----~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~ 84 (435)
T 2vgl_M 9 NHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR----QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYK 84 (435)
T ss_dssp CTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS----SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCChhHHHHHHHHHhccc----cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHH
Confidence 33346677777764321 22332222211 11223344566788888888 566666666652221
Q ss_pred hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccccceeecc-CCcccccc-cccchhhhhhhccCCccccc
Q psy5848 1316 KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKI-GSHSYEAM-KQFTVCIEEALFKLPVHRDR 1393 (1753)
Q Consensus 1316 ~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~LKl-GS~~~~dl-~sf~~tve~aL~slppWR~~ 1393 (1753)
.+++|.+|||.++|..|+.||++||+|||||||+||||+|++++|+.++. .+...... ..-...+..+..+.++||+.
T Consensus 85 ~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~ 164 (435)
T 2vgl_M 85 MCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRRE 164 (435)
T ss_dssp HHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCS
T ss_pred HHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 45889999999999999999999999999999999999999999999954 33211000 00001112233456899999
Q ss_pred ccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccccEEec
Q psy5848 1394 ALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLE 1473 (1753)
Q Consensus 1394 gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~Ld 1473 (1753)
|++|++|||||||+|+|+++++++|.+++++|.|+|+|+|||||||+|+|+||+..+.++...++....+..+..++.|+
T Consensus 165 gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (435)
T 2vgl_M 165 GIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAID 244 (435)
T ss_dssp CCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCC
T ss_pred cCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEcc
Confidence 99999999999999999999999999999999999999999999999999999986543221111000011123578999
Q ss_pred cccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEe-CcEEEEEEEEeccCcccCCCCCcc
Q psy5848 1474 GVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIP 1552 (1753)
Q Consensus 1474 DcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vs-g~kVELri~L~vtgf~S~~~~q~~ 1552 (1753)
||+||+||++++|+++|+|+|+||||+| +||+||++. +..+||+|.+.+... ++++|+++.+.. .+. .+..
T Consensus 245 d~~fH~cV~~~~f~~~r~isF~PPdg~F-~Lm~Yr~~~--~~~~P~~i~~~~~~~~~~~ve~~l~~~~-~~~----~~~~ 316 (435)
T 2vgl_M 245 DCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKS-NFK----PSLL 316 (435)
T ss_dssp EEEECTTEEEC-----CCEEECCCSEEE-EEEEEEECS--SCCCSEEEEEEEECCTTTEEEEEEEEEE-CSC----TTSE
T ss_pred ccccceeecHhHhccCceEEEECCCCcE-EEEEEEecC--CcCCCeEEEEEEEecCCCEEEEEEEEeC-CCC----CCce
Confidence 9999999999999999999999999999 999999986 577999999988854 478999998742 222 2367
Q ss_pred cceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCC
Q psy5848 1553 CEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRL 1632 (1753)
Q Consensus 1553 cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KL 1632 (1753)
|+||.|+||+|+++. .+.++++.|+++|++.+++|+|+|+++
T Consensus 317 ~~~V~I~IP~P~~~~--------------------------------------~~~~~~~~G~~~y~~~~~~l~W~I~~~ 358 (435)
T 2vgl_M 317 AQKIEVRIPTPLNTS--------------------------------------GVQVICMKGKAKYKASENAIVWKIKRM 358 (435)
T ss_dssp EEEEEEEEECCSSCC--------------------------------------CEEEEESSSEEEEETTTTEEEEEEEEE
T ss_pred eeEEEEEEECCCCCC--------------------------------------CceEEecceeEEEccCCCEEEEEeccC
Confidence 999999999999852 023668889999999999999999999
Q ss_pred CCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecC---CCCCCCccCeEEEEEcC
Q psy5848 1633 PKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNS---DSDVPPEKYVRHLARHE 1709 (1753)
Q Consensus 1633 pGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~---~~~ykP~KWVRYiTkSg 1709 (1753)
+|+ ++++|+|+|+|.+......+ ..+||+|+|+|| +++|||+|+||+|.++ .++|+|+|||||+|++|
T Consensus 359 ~~~-----~~~~l~~~~~l~~~~~~~~~---~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg 429 (435)
T 2vgl_M 359 AGM-----KESQISAEIELLPTNDKKKW---ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 429 (435)
T ss_dssp ETT-----CEEEEEEEEECCCCSCSCCC---CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEE
T ss_pred CCC-----CCEEEEEEEEecCCCcCccc---CCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCC
Confidence 977 47899999999765322222 278999999999 9999999999999886 24799999999999999
Q ss_pred cEEEE
Q psy5848 1710 YRVGI 1714 (1753)
Q Consensus 1710 YyV~r 1714 (1753)
.|.+|
T Consensus 430 ~y~~R 434 (435)
T 2vgl_M 430 IYETR 434 (435)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 88776
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.3e-66 Score=611.44 Aligned_cols=364 Identities=20% Similarity=0.314 Sum_probs=287.6
Q ss_pred ccccCCCeEEEEEee----EEEeecCCCCCCcch-----hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccc
Q psy5848 1286 QYDNFGKIFTVKLQF----IFYKERPGVRPGQVT-----KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHA 1356 (1753)
Q Consensus 1286 ~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~-----~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Te 1356 (1753)
.+=..+.+++|+++| ++...+...-+-++. .+++|.+|||.++|..|+.||++||+|||||+|+||||+|+
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~ 127 (423)
T 1w63_M 48 PILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTD 127 (423)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCC
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecC
Confidence 344567888899888 666666677663222 45889999999999999999999999999999999999999
Q ss_pred cccceeecc-CCcccccccccchhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEee
Q psy5848 1357 PQTSQLFKI-GSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFL 1435 (1753)
Q Consensus 1357 pniLq~LKl-GS~~~~dl~sf~~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFL 1435 (1753)
+++|+.++. .+..... .......+..+.++||+.|++|++|||||||+|+|+++++++|.+++++|.|+|+|+|||
T Consensus 128 ~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~L 204 (423)
T 1w63_M 128 SKILQEFITQEGHKLET---GAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFL 204 (423)
T ss_dssp STTTTTTCCSCCCCCCC---C-----------CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHhhcCCCccccc---cccCCcccccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEe
Confidence 999999854 3322110 000112233456899999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccccccccccccccccccccccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCC
Q psy5848 1436 SGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNR 1515 (1753)
Q Consensus 1436 SGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~ 1515 (1753)
+|||+|+|+||+....++ .|+ ....++.|+||+||+||++++|+++|+|+|+||||+| +||+||++. +.
T Consensus 205 sG~P~~~l~Ln~~~~~~~--~~~------~~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F-~Lm~Yr~~~--~~ 273 (423)
T 1w63_M 205 SGMPELRLGLNDKVLFDN--TGR------GKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRLNT--HV 273 (423)
T ss_dssp SSCCEEEEEECSCC---------------------CEEEEEECTTEEESSSSSCCEEEECCCSEEE-EEEEEEEEC--CC
T ss_pred CCCCeEEEEECCcccccc--ccc------cccCceEcccccccccccHHHhCCCCeEEEECCCCcE-EEEEEEecC--Cc
Confidence 999999999999875332 222 2346788999999999999999999999999999999 999999986 46
Q ss_pred CCCeEEEEEEEE-eCcEEEEEEEEeccCcccCCCCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccc
Q psy5848 1516 ELPLQLKAVMCV-TGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGI 1594 (1753)
Q Consensus 1516 ~LPF~Vkp~v~v-sg~kVELri~L~vtgf~S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~V 1594 (1753)
.+||+|.+.+.. +++++|+++.+.. .+. .+..|+||.|+||+|+++.
T Consensus 274 ~~P~~i~~~~~~~~~~~ve~~l~~~~-~~~----~~~~~~~V~I~IP~P~~~~--------------------------- 321 (423)
T 1w63_M 274 KPLIWIESVIEKHSHSRIEYMVKAKS-QFK----RRSTANNVEIHIPVPNDAD--------------------------- 321 (423)
T ss_dssp CCTTCCEEEEEEETTTEEEEEEEEEC-CSC----TTSEEESCEEEEECCTTCC---------------------------
T ss_pred CCCEEEEEEEEecCCCEEEEEEEEcc-cCC----CcceeeEEEEEEeCCCCcc---------------------------
Confidence 799999998875 4689999998741 222 2367999999999999852
Q ss_pred eeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEe
Q psy5848 1595 ERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTM 1674 (1753)
Q Consensus 1595 E~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeI 1674 (1753)
.+.++++.|+++|++.+++|+|+|++++|+ ++++|+|+|+|.+......+ ..+||+|+|+|
T Consensus 322 -----------~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~-----~~~~l~~~~~l~~~~~~~~~---~~~pi~v~F~i 382 (423)
T 1w63_M 322 -----------SPKFKTTVGSVKWVPENSEIVWSVKSFPGG-----KEYLMRAHFGLPSVEAEDKE---GKPPISVKFEI 382 (423)
T ss_dssp -----------CCEEEESSSEEEEETGGGEEEEECSEEETT-----CEEEEEEEEEC-------------CCCEEEEBCC
T ss_pred -----------cceEEecCccEEEecCCCEEEEEeCcCCCC-----CcEEEEEEEEccCCCccccc---CCCcEEEEEEE
Confidence 134668899999999999999999999977 46889999999765421111 27899999999
Q ss_pred CcccccccEEeEEEeecCCCCCCCccCeEEEEEcCcEEEEE
Q psy5848 1675 PATQVSHTTVRSVSISNSDSDVPPEKYVRHLARHEYRVGIE 1715 (1753)
Q Consensus 1675 P~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTkSgYyV~re 1715 (1753)
|++++|||+|++|+|.++ .+|+|+|||||+|++|.|.+|.
T Consensus 383 ~~~t~Sgl~V~~l~v~~~-~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 383 PYFTTSGIQVRYLKIIEK-SGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp SSCCTTCCCEEEEEEECS-SCCCCEEEEEEEEEBSCEEECC
T ss_pred CCEeCCCCEEEEEEeEcc-CCCCCcCceEEEEeCCcEEEec
Confidence 999999999999999884 5799999999999999888764
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=3.3e-61 Score=549.52 Aligned_cols=307 Identities=21% Similarity=0.341 Sum_probs=221.6
Q ss_pred cccccccceeecc-CCccccc-ccccchhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEE
Q psy5848 1353 VEHAPQTSQLFKI-GSHSYEA-MKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLF 1430 (1753)
Q Consensus 1353 q~TepniLq~LKl-GS~~~~d-l~sf~~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~ 1430 (1753)
|+|++++||.|+. ++..... .......+..+..+.++||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 6899999999965 3221100 0011122334455679999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCeEEEEeccccccccccccccccccccccccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEec
Q psy5848 1431 FLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVR 1510 (1753)
Q Consensus 1431 ~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs 1510 (1753)
|+|||||||+|+|+||+..+.++...++....+.....++.|+||+||+||++++|+++|+|+|+||||+| +||+||++
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F-~Lm~Yr~~ 159 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRTT 159 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEE-EEEEEEEC
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCe-EEEEEEec
Confidence 99999999999999999865332211100000111245789999999999999999999999999999999 99999998
Q ss_pred CCCCCCCCeEEEEEEEEe-CcEEEEEEEEeccCcccCCCCCcccceEEEEecCCCcchhhhccccccccccccccccccC
Q psy5848 1511 PPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTG 1589 (1753)
Q Consensus 1511 ~~~n~~LPF~Vkp~v~vs-g~kVELri~L~vtgf~S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~ 1589 (1753)
. +..+||+|.+.+... +++||+++.+.. .|. ....|+||+|+||+|+++. +
T Consensus 160 ~--~~~lP~~v~~~~~~~g~~~iE~~l~~~~-~~~----~~~~~~nV~I~IP~P~~~~---------------~------ 211 (314)
T 1i31_A 160 K--DIILPFRVIPLVREVGRTKLEVKVVIKS-NFK----PSLLAQKIEVRIPTPLNTS---------------G------ 211 (314)
T ss_dssp S--SCCCCEEEEEEEEEETTTEEEEEEEEEE-CSC----TTCEEEEEEEEEECCTTEE---------------E------
T ss_pred C--CcCCCEEEEEEEEecCCcEEEEEEEEcc-CCC----CcceeeEEEEEEECCCCcc---------------c------
Confidence 6 578999999998864 469999998842 222 2467999999999999853 0
Q ss_pred ccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceE
Q psy5848 1590 KVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAY 1669 (1753)
Q Consensus 1590 kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIs 1669 (1753)
+.++++.|+++|++.+++|+|+|++++|+ ++++|+|+|+|.+......+ ..+||+
T Consensus 212 -----------------~~~~~~~G~~~y~~~~~~l~W~I~~i~g~-----~e~~l~~~~~l~s~~~~~~~---~~~pi~ 266 (314)
T 1i31_A 212 -----------------VQVICMKGKAKYKASENAIVWKIKRMAGM-----KESQISAEIELLPTNDKKKW---ARPPIS 266 (314)
T ss_dssp -----------------EEEECSSSEEEEEGGGTEEEEEEEEEESS-----EEEEEEEEEEECCCCSSSCC---CCCCEE
T ss_pred -----------------ceEEecCceEEEecCCCEEEEEeCcCCCC-----CcEEEEEEEEecCCCcCCcc---CCCcEE
Confidence 23567889999999999999999999977 57899999999764322222 278999
Q ss_pred EEEEeCcccccccEEeEEEeecC---CCCCCCccCeEEEEEcCcEEEE
Q psy5848 1670 VEFTMPATQVSHTTVRSVSISNS---DSDVPPEKYVRHLARHEYRVGI 1714 (1753)
Q Consensus 1670 VeFeIP~~TaSGLkVRSLkV~e~---~~~ykP~KWVRYiTkSgYyV~r 1714 (1753)
|+|+|| +++|||+|+||+|.++ .++|+|+|||||+|++|.|.+|
T Consensus 267 v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R 313 (314)
T 1i31_A 267 MNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 313 (314)
T ss_dssp EEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEEC
T ss_pred EEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEc
Confidence 999999 9999999999999886 2479999999999999988776
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.5e-58 Score=517.67 Aligned_cols=264 Identities=23% Similarity=0.386 Sum_probs=223.8
Q ss_pred cccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccc
Q psy5848 1389 VHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEE 1468 (1753)
Q Consensus 1389 pWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~ 1468 (1753)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|||+|||+|+|+||+..+.++ .|+ ....
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~--~~~------~~~~ 72 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDN--TGR------GKSK 72 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHH--TTC------TTSC
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccc--ccc------cccC
Confidence 69999999999999999999999999999999999999999999999999999999999875321 121 2346
Q ss_pred cEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEE-eCcEEEEEEEEeccCcccCC
Q psy5848 1469 WIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCV-TGNKVELRADILVPGFVSRK 1547 (1753)
Q Consensus 1469 ~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~v-sg~kVELri~L~vtgf~S~~ 1547 (1753)
++.|+||+||+||++++|+++|+|+|+||||+| +||+||++. +..+||.|.+.+.. +++++++.+.+. +.+.
T Consensus 73 ~~~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F-~Lm~yr~~~--~~~~Pi~i~~~~~~~~~~~vei~v~~k--~~~~-- 145 (266)
T 4en2_M 73 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRLNT--HVKPLIWIESVIEKHSHSRIEYMVKAK--SQFK-- 145 (266)
T ss_dssp CBCCEEEEECTTBCHHHHHHHCCCEECCCSEEE-EEEEEEECC--CCCCSEEEEEEEEEEETTEEEEEEEEE--ECBC--
T ss_pred ccCccccccccccCHhHccccceEEEeCCCCce-EEEEEEecC--CCCCCEEEEEEEecCCCEEEEEEEEEe--cCCC--
Confidence 789999999999999999999999999999999 999999986 45799999998875 457899888873 2222
Q ss_pred CCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEE
Q psy5848 1548 LGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVW 1627 (1753)
Q Consensus 1548 ~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVW 1627 (1753)
.+..|+||+|+||+|.++. .+.++++.|+++|++.+++|+|
T Consensus 146 -~~~~~~nV~I~IP~P~~~~--------------------------------------~~~~~~~~G~~~y~~~~~~lvW 186 (266)
T 4en2_M 146 -RRSTANNVEIHIPVPNDAD--------------------------------------SPKFKTTVGSVKWVPENSEIVW 186 (266)
T ss_dssp -TTCEEEEEEEEEECCTTCE--------------------------------------EEEEEESSSEEEEETTTTEEEE
T ss_pred -CCcEEEEEEEEECCCCCcC--------------------------------------cceEEecCceEEEeccCCEEEE
Confidence 3478999999999999742 0336688999999999999999
Q ss_pred EeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCCCCCCccCeEEEEE
Q psy5848 1628 RMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLAR 1707 (1753)
Q Consensus 1628 rI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~~ykP~KWVRYiTk 1707 (1753)
+|++++|+ ++++|+|+|.|.+......+. .+||+|+|+|||+++|||+|+||+|.++ .+|+++|||||+|+
T Consensus 187 ~I~~~~g~-----~e~~l~~~~~l~s~~~~~~~~---~~pI~v~F~ip~~t~SGl~V~~L~v~e~-~~y~~~kwVrY~T~ 257 (266)
T 4en2_M 187 SVKSFPGG-----KEYLMRAHFGLPSVEAEDKEG---KPPISVKFEIPYFTTSGIQVRYLKIIEK-SGYQALPWVRYITQ 257 (266)
T ss_dssp EEEEEESS-----CEEEEEEEEEC-------------CCCEEEEEEEESEESSCCCEEEEEEECS-SCCCEEEEEEEEEE
T ss_pred EEeeECCC-----cceEEEEEEEeCCCCCCCccc---CCcEEEEEEeCCceeCCcEEEEEEeecc-CCCCCCCCEEEEEe
Confidence 99999987 468999999997653222222 7999999999999999999999999885 57999999999999
Q ss_pred cCcEEEEE
Q psy5848 1708 HEYRVGIE 1715 (1753)
Q Consensus 1708 SgYyV~re 1715 (1753)
+|.|++|.
T Consensus 258 sg~y~~R~ 265 (266)
T 4en2_M 258 NGDYQLRT 265 (266)
T ss_dssp CSSEEECC
T ss_pred CCCEEEec
Confidence 99988874
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=7.1e-58 Score=534.93 Aligned_cols=315 Identities=22% Similarity=0.327 Sum_probs=237.0
Q ss_pred HHHhhhhcCCcccccccccceeeccCCcccccccccchhhhhhhccCCcc---cccccccccceEEEEEEEeEEEEEccc
Q psy5848 1341 EFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFTVCIEEALFKLPVH---RDRALTYKMEEVQITTVDEIYVEQNET 1417 (1753)
Q Consensus 1341 ELLDEmiD~GyPq~TepniLq~LKlGS~~~~dl~sf~~tve~aL~slppW---R~~gIkYkkNEIFVDVIE~LnvIVdsn 1417 (1753)
.|...|++.||.+-..-.. .++=+- |--+..............+|| |..|++|++|||||||+|+|+++++++
T Consensus 63 ~~g~~Ll~~G~i~hv~~~~--~F~d~~--~y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~ 138 (385)
T 3ml6_A 63 KYASGLLKAGLIRHTVNKI--TFSEQC--YYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQ 138 (385)
T ss_dssp HHHHHHHHHSSEEESSSCS--SCCSSS--EEEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTT
T ss_pred HHHHHHHhCCcEEEcCCcc--eecCcc--eEEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEECCC
Confidence 4667788889876544111 111111 111111112222223334599 789999999999999999999999999
Q ss_pred cceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccccEEeccccccccccccccccCceEEEeCC
Q psy5848 1418 GSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPP 1497 (1753)
Q Consensus 1418 G~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPP 1497 (1753)
|.+++++|.|+|.|+|||||||+|+|+|||..+.++...++.+..+.....++.|+||+||+||++++|+++|+|+|+||
T Consensus 139 G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPP 218 (385)
T 3ml6_A 139 GQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 218 (385)
T ss_dssp SCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSCSEEEECCC
T ss_pred CCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHccccceEEEeCC
Confidence 99999999999999999999999999999987654433233333444456789999999999999999999999999999
Q ss_pred CCceeeeEeEEecCCCCCCCCeEEEEEEEEe-CcEEEEEEEEeccCcccCCCCCcccceEEEEecCCCcchhhhcccccc
Q psy5848 1498 DACYIELMRFRVRPPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHF 1576 (1753)
Q Consensus 1498 DGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vs-g~kVELri~L~vtgf~S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~ 1576 (1753)
||+| +||+||++. +..+||+|.+.+... ++++++.+.+. +.+. .+..|+||.|+||+|+++.
T Consensus 219 Dg~F-~Lm~Yr~~~--~~~~Pf~i~~~v~~~~~~~vei~v~lk--~~f~---~~~~~~nV~I~IP~P~~~~--------- 281 (385)
T 3ml6_A 219 DGEF-ELMRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIK--SNFK---PSLLAQKIEVRIPTPLNTS--------- 281 (385)
T ss_dssp SEEE-EEEEEEECS--SCCCSEEEEEEEEEETTTEEEEEEEEE--ECSC---TTCCEEEEEEEEECCTTEE---------
T ss_pred CCce-EEEEEEcCC--CCCCCEEEEEEEEeCCCeEEEEEEEEe--ecCC---CcceEEEEEEEecCCCCcc---------
Confidence 9999 999999986 567999999998864 58999999884 2222 3478999999999999742
Q ss_pred ccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCC
Q psy5848 1577 RYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQ 1656 (1753)
Q Consensus 1577 rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~e 1656 (1753)
+ +.+.++.|+++|++.+++|+|+|++++|+ ++++|+|+|.|.+...
T Consensus 282 ------~-----------------------~~~~~~~G~~~y~~~~~~lvW~I~k~~g~-----~e~~l~~~~~l~~~~~ 327 (385)
T 3ml6_A 282 ------G-----------------------VQVICMKGKAKYKASENAIVWKIKRMAGM-----KESQISAEIELLPTND 327 (385)
T ss_dssp ------E-----------------------EEEEESSSEEEEEGGGTEEEEEEEEECSS-----EEEEEEEEEEECCCSS
T ss_pred ------c-----------------------ceEEecCceEEEeccCcEEEEEeeeECCC-----cceEEEEEEEECCCCC
Confidence 0 23567889999999999999999999977 5789999999976432
Q ss_pred CCcccccCCCceEEEEEeCcccccccEEeEEEeecCC---CCCCCccCeEEEEEcCcEEEE
Q psy5848 1657 IPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSD---SDVPPEKYVRHLARHEYRVGI 1714 (1753)
Q Consensus 1657 ip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~---~~ykP~KWVRYiTkSgYyV~r 1714 (1753)
...+ ..+||+|+|+|| +++|||+||||+|.++. ++|+++|||||+|++|.|++|
T Consensus 328 ~~~~---~~~PI~v~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R 384 (385)
T 3ml6_A 328 KKKW---ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 384 (385)
T ss_dssp CCSC---CCCCEEEEEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEEC
T ss_pred Cccc---cCCCEEEEEEEe-ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEec
Confidence 2222 278999999999 99999999999998763 468999999999999988876
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=3.7e-57 Score=514.25 Aligned_cols=270 Identities=20% Similarity=0.319 Sum_probs=210.6
Q ss_pred CCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccc
Q psy5848 1387 LPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVT 1466 (1753)
Q Consensus 1387 lppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~ 1466 (1753)
..+||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|||+|||+|+|+||+..+++++.. ...
T Consensus 22 v~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~-------~~~ 92 (301)
T 3l81_A 22 VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSEL-------RGY 92 (301)
T ss_dssp -------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTT-------TCC
T ss_pred ccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccc-------ccc
Confidence 4599996 8999999999999999999999999999999999999999999999999999876443211 123
Q ss_pred cccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEeC--cEEEEEEEEeccCcc
Q psy5848 1467 EEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTG--NKVELRADILVPGFV 1544 (1753)
Q Consensus 1467 ~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vsg--~kVELri~L~vtgf~ 1544 (1753)
..++.|+||+||+||++++|+++|+|+|+||||+| +||+||++......+||.|++.+...+ ++||+++.+. +.+
T Consensus 93 ~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F-~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~--~~f 169 (301)
T 3l81_A 93 GPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGEL-TVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLR--CDL 169 (301)
T ss_dssp CSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEE-EEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEE--ECS
T ss_pred cCceEccccccccccChhHccccceEEecCCCCee-EEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEe--cCC
Confidence 46789999999999999999999999999999999 999999987544579999999999864 6999998874 222
Q ss_pred cCCCCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcE
Q psy5848 1545 SRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRS 1624 (1753)
Q Consensus 1545 S~~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~ra 1624 (1753)
+ .+..|+||+|+||||.++... . ..+.++.|+++| .+++
T Consensus 170 ~---~~~~~~nV~I~IPvP~~~~~~---------------~---------------------~~~~~~~G~~~y--~~~~ 208 (301)
T 3l81_A 170 L---SKSQALNVRLHLPLPRGVVSL---------------S---------------------QELSSPEQKAEL--AEGA 208 (301)
T ss_dssp C---TTCEEEEEEEEEECCTTCEEE---------------E---------------------EEESSTTCEEEE--ETTE
T ss_pred C---CCcEEEEEEEEEcCCCCcccc---------------e---------------------EEEeecCceEEE--eCcE
Confidence 2 347899999999999986410 0 002356799999 8899
Q ss_pred EEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCc------ccccCCCceEEEEEeCcccccccEEeEEEeecCC-CCCC
Q psy5848 1625 IVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPD------DLHTICQYAYVEFTMPATQVSHTTVRSVSISNSD-SDVP 1697 (1753)
Q Consensus 1625 IVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~------~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~-~~yk 1697 (1753)
|+|+|++++|+ ++++++++|+|.+...... ......+||+|+|+|||+++|||+||||+|.++. .+|+
T Consensus 209 lvW~I~~~~g~-----~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~ 283 (301)
T 3l81_A 209 LRWDLPRVQGG-----SQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNAN 283 (301)
T ss_dssp EEEEECCEETT-----CEEEEEEEEECCCCCC------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC-------
T ss_pred EEEEEeeECCC-----cEEeEEEEEEecCCccccccccccccccccCCCEEEEEEeCCccccCcEEEEEEEecccccCCC
Confidence 99999999987 3678999998875432110 0011279999999999999999999999999875 4689
Q ss_pred CccCeEEEEEcCcEEEE
Q psy5848 1698 PEKYVRHLARHEYRVGI 1714 (1753)
Q Consensus 1698 P~KWVRYiTkSgYyV~r 1714 (1753)
++|||||+|++|.|++|
T Consensus 284 ~~kwVRYiT~sg~Y~~R 300 (301)
T 3l81_A 284 PHKWVRHLSHSDAYVIR 300 (301)
T ss_dssp CEEEEEEEEEEEEEEEC
T ss_pred CccceEEEEeCCcEEEc
Confidence 99999999999988876
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.60 E-value=1.5e-08 Score=106.20 Aligned_cols=79 Identities=5% Similarity=-0.053 Sum_probs=65.4
Q ss_pred ccccCCCeEEEEEee----EEEeecCCCCCCcch-----hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccc
Q psy5848 1286 QYDNFGKIFTVKLQF----IFYKERPGVRPGQVT-----KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHA 1356 (1753)
Q Consensus 1286 ~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~-----~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~Te 1356 (1753)
.+=..+..++|+++| ++...+....+-.+. .+++|.+|||.++|..|+.||++||+|||||+|+||||+|+
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~ 127 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTS 127 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCC
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecC
Confidence 344557788888888 666667777663222 45889999999999999999999999999999999999999
Q ss_pred cccceeec
Q psy5848 1357 PQTSQLFK 1364 (1753)
Q Consensus 1357 pniLq~LK 1364 (1753)
+++|+.++
T Consensus 128 ~~~l~~~I 135 (158)
T 1w63_Q 128 KKSVLKAI 135 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998884
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=98.54 E-value=2.4e-08 Score=102.65 Aligned_cols=79 Identities=6% Similarity=-0.003 Sum_probs=63.3
Q ss_pred ccccCCCeEEEEEee----EEEeecCCCCCCcch-----hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCccccc-
Q psy5848 1286 QYDNFGKIFTVKLQF----IFYKERPGVRPGQVT-----KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEH- 1355 (1753)
Q Consensus 1286 ~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~-----~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~T- 1355 (1753)
.+=..+....|.++| ++...+....+-.+. .+++|.+|||.++|..|+.||++||+|||||+|+||||+|
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~ 127 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETS 127 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCC
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 344456788888887 666666676662222 4588999999999999999999999999999999999988
Q ss_pred ccccceeec
Q psy5848 1356 APQTSQLFK 1364 (1753)
Q Consensus 1356 epniLq~LK 1364 (1753)
+.++|+.+.
T Consensus 128 ~~~il~~~~ 136 (142)
T 2vgl_S 128 QTKVLKQLL 136 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888763
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=98.41 E-value=1.1e-07 Score=99.65 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=62.0
Q ss_pred ccccCCCeEEEEEee----EEEeecCCCCCCcch-----hHHHHHHHh-hhhhHhhhhcchhhHHHHHhhhhcCCccccc
Q psy5848 1286 QYDNFGKIFTVKLQF----IFYKERPGVRPGQVT-----KAERITNKL-SQFAAYAIQGDYQGVKEFGSDLRKLGLPVEH 1355 (1753)
Q Consensus 1286 ~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~-----~~e~L~dYl-G~LnEesIr~NFvLVYELLDEmiD~GyPq~T 1355 (1753)
.+=.++..+.|+++| ++..-+.+..+-.+. .+++|..|| |.++|..|+.||++||+|||||+|+|+||+|
T Consensus 58 ~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT 137 (153)
T 3tjz_C 58 EIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILES 137 (153)
T ss_dssp CEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCC
T ss_pred CEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeC
Confidence 344567888898888 555566666652211 347888999 8999999999999999999999999999999
Q ss_pred ccccceee
Q psy5848 1356 APQTSQLF 1363 (1753)
Q Consensus 1356 epniLq~L 1363 (1753)
+++.+...
T Consensus 138 ~~~~I~~~ 145 (153)
T 3tjz_C 138 DPQQVVHR 145 (153)
T ss_dssp CHHHHHHT
T ss_pred CHHHHHHH
Confidence 99877543
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00069 Score=78.74 Aligned_cols=215 Identities=16% Similarity=0.263 Sum_probs=133.0
Q ss_pred cceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCC-------CeEEEEeccccccccccccccccccccccccEE
Q psy5848 1399 MEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGM-------PDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIR 1471 (1753)
Q Consensus 1399 kNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGm-------Pec~LgLND~~l~gkevvGr~di~P~~~~~~I~ 1471 (1753)
.-.+-.-|+|.||+.+.. |.+.++.|.|.|. .+|..|. +.+.+.|++-... +.+
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEia-Lsy~~~~~s~~p~p~~l~fRL~N~~~L--ekv--------------- 127 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIA-LNYLPNSVMNSPLPIGINLRINNGAKF--EKV--------------- 127 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEE-EEEECCSSSCCCCCSEEEEEEETGGGE--EEE---------------
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEE-EecCCCccccCCCCccEEEEecCcchh--hee---------------
Confidence 347778999999999975 6788999999974 5777762 4477777653211 111
Q ss_pred eccccccccccccccccCceEEEeCC--CCceeeeEeEEecCCCCCCCCeEEEEEEEEeCcEEEEEEEEeccCcccCCCC
Q psy5848 1472 LEGVEFHSCVQQDEYEKGRTIKFKPP--DACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLG 1549 (1753)
Q Consensus 1472 LdDcsFHqCVdLdeFE~dRvISFIPP--DGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vsg~kVELri~L~vtgf~S~~~~ 1549 (1753)
+-+-+|-.|+.-.+|.- -++ ..+-..+|+|++.. ..+|+.|.+..........|+++...-........
T Consensus 128 ~pN~~fv~~~~~~eF~v------n~~~L~sktv~~lKYqVs~---~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~ 198 (328)
T 3g9h_A 128 ILNQAFIERVAPEEFKV------NPSFIDSRTLGAIKYSIKE---PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEIS 198 (328)
T ss_dssp EECTTTEEEEETTEEEE------CTTTTBTCEEEEEEEEEES---CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCC
T ss_pred eCCHHHhccCCCCCEEE------chHHhcccceeeEEEEECC---CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCC
Confidence 22223333332222221 111 11224789999973 67899999999987776666666532111111011
Q ss_pred CcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEe
Q psy5848 1550 QIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629 (1753)
Q Consensus 1550 q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI 1629 (1753)
...-.||+|.++|.-.- +.+ +++.. .+.|..+.+.|.|+|
T Consensus 199 ~~~L~Nv~~~V~ldGa~--------------ats-------------------------~qskP-~gtwn~e~~ri~Wkl 238 (328)
T 3g9h_A 199 QIVIEDLVVFVNIDGAN--------------ATS-------------------------ALSKP-QGSFSKEKKRITWRF 238 (328)
T ss_dssp EEEEEEEEEEEEBCSSC--------------EEE-------------------------EEESS-SCCBCSSSCEEEEEC
T ss_pred CceeeeEEEEEEeCCCc--------------eeE-------------------------EEecC-CceeccccCEEEEEC
Confidence 35788999999985421 111 11111 456889999999999
Q ss_pred CC-C--CCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcc---------cccccEEeEEEeec
Q psy5848 1630 PR-L--PKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPAT---------QVSHTTVRSVSISN 1691 (1753)
Q Consensus 1630 ~K-L--pGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~---------TaSGLkVRSLkV~e 1691 (1753)
+. + ..++ + ...|.|+|.+ .....+. ...|.++|++-+. .-|||-|.++...+
T Consensus 239 ~e~l~l~~~g-~---~gkLiARf~~-~g~~~~~-----~~gV~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~~ 302 (328)
T 3g9h_A 239 KEPVVLTRNG-E---GQRLIARFIT-DGLAHES-----AKGVITKFTISETDNVALPHSGAGSGITLTCQELDE 302 (328)
T ss_dssp SSCEEEETTC-C---CEEEEEEEEE-SSCCCBC-----SSCEEEEEEECCCSCSSCTTTTCSCCCEEEEEEESS
T ss_pred CCCcccccCC-C---CCeEEEEEEc-CCCCCCC-----CCcEEEEEEEeCCCcccccccccCCceeEEeccccc
Confidence 98 3 3211 1 1479999988 3222111 2349999999875 47899999887753
No 11
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.41 E-value=0.051 Score=74.74 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=9.9
Q ss_pred cCceeeccceeeeec
Q psy5848 247 KRKLISLGCAVDVLA 261 (1753)
Q Consensus 247 ~kk~vslg~avevl~ 261 (1753)
.+.+|.=|-||-+|+
T Consensus 1057 ~~a~v~pGe~VG~ia 1071 (1752)
T 3h0g_A 1057 QQAVVSPGEMVGTLA 1071 (1752)
T ss_dssp HTTBCCSSCCHHHHH
T ss_pred HHhccCcccchhhhh
Confidence 345677777777664
No 12
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.72 E-value=0.063 Score=73.89 Aligned_cols=9 Identities=56% Similarity=0.770 Sum_probs=5.6
Q ss_pred hhhHHHhhc
Q psy5848 444 LKLIENEIL 452 (1753)
Q Consensus 444 Lk~iE~ell 452 (1753)
|+.||+.+|
T Consensus 1266 l~~l~~~~l 1274 (1752)
T 3h0g_A 1266 LKTIEGHML 1274 (1752)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 666666554
No 13
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=53.60 E-value=2.8 Score=50.94 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.7
Q ss_pred cccccceEEEEEE
Q psy5848 1235 TGQRFWKKVFVKI 1247 (1753)
Q Consensus 1235 ~~~R~W~pi~vrl 1247 (1753)
.|+-.++.||.-.
T Consensus 275 lG~G~fg~Vy~~~ 287 (535)
T 2h8h_A 275 LGQGCFGEVWMGT 287 (535)
T ss_dssp EEECSSEEEEEEE
T ss_pred cccCCCeEEEEEE
Confidence 4445556666443
No 14
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=52.96 E-value=2.9 Score=50.80 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.7
Q ss_pred EEEEEE
Q psy5848 1243 VFVKIV 1248 (1753)
Q Consensus 1243 i~vrl~ 1248 (1753)
+.||+.
T Consensus 294 vavK~~ 299 (535)
T 2h8h_A 294 VAIKTL 299 (535)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444443
No 15
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=50.33 E-value=25 Score=36.42 Aligned_cols=72 Identities=15% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeecccccccc-ccCCCeEEE
Q psy5848 1218 DGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQY-DNFGKIFTV 1296 (1753)
Q Consensus 1218 ~~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~y-d~~gKIHtV 1296 (1753)
-+.||-++ +-+|-+ .|+.-|-|| |.+.|.||......++|+|++|---..|....--+. ......|.+
T Consensus 9 lkeGW~VH--~t~~d~-----~rKRHYWrL----D~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcF 77 (125)
T 2coa_A 9 LREGWVVH--YSNKDT-----LRKRHYWRL----DCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCF 77 (125)
T ss_dssp SEEEEEEE--CCSSSC-----CCEEEEEEE----CSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEE
T ss_pred eecceEEE--EccCCc-----cccceeeEe----cCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceE
Confidence 36789554 433433 578888899 467899999999999999999987666655332221 122244766
Q ss_pred EEee
Q psy5848 1297 KLQF 1300 (1753)
Q Consensus 1297 kl~~ 1300 (1753)
-|.-
T Consensus 78 Ei~T 81 (125)
T 2coa_A 78 EIVT 81 (125)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 16
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.05 E-value=33 Score=35.70 Aligned_cols=53 Identities=17% Similarity=0.465 Sum_probs=40.7
Q ss_pred CCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccc
Q psy5848 1219 GPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEI 1282 (1753)
Q Consensus 1219 ~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~ 1282 (1753)
+.||-++.-- |-+ .|+.-|-||- .+.|.||......++|+|++|---..|...
T Consensus 10 keGWmVH~t~--~d~-----~rKRHYWrLD----~K~Itlf~~e~~~k~ykeIpLseIL~v~~~ 62 (129)
T 2d9z_A 10 KEGWMVHYTS--RDN-----LRKRHYWRLD----SKCLTLFQNESGSKYYKEIPLSEILRISSP 62 (129)
T ss_dssp EEEEEEEEES--SCC-----CCEEEEEEEE----SSCEEEESCSSCCSCCCEECTTTCCEECCT
T ss_pred ecceEEEEcc--CCc-----cccceeeEec----CCeEEEEecCCCCceeceeeHHHhcccccc
Confidence 6799665433 322 3888899995 457999999999999999999877776653
No 17
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=36.95 E-value=49 Score=32.78 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=44.3
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEEee
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQF 1300 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl~~ 1300 (1753)
.|.|++.++-|.. ++..+|..|..+.+.+|-.-+.|..| .|+.+.. -+..++-|.++|.|
T Consensus 20 ~~~WkkrWfVL~~-~~~~~Ly~Yk~~~d~~p~g~I~L~g~-~V~~~~~--~~~~~~~~~Fki~~ 79 (112)
T 2coc_A 20 GETWSEVWAAIPM-SDPQVLHLQGGSQDGRLPRTIPLPSC-KLSVPDP--EERLDSGHVWKLQW 79 (112)
T ss_dssp SSCEEEEEEECCT-TCTTCEEEECCTTCSSSCSEECGGGC-EEECCCS--SSCCSSSEEEEEEE
T ss_pred CCCceEEEEEEEC-CCccEEEEECCCCccCcceEEEcCCC-EEEecCc--ccccCCCCEEEEec
Confidence 6789999999863 11137888888899999988888765 7775322 24556889999875
No 18
>2lid_A Vitellogenin; lipid transport; HET: SEP; NMR {Synthetic}
Probab=36.07 E-value=11 Score=30.29 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=10.5
Q ss_pred cccccccCCCCCC
Q psy5848 82 QTSYFQRKPPGPS 94 (1753)
Q Consensus 82 ~~s~~qr~p~~~~ 94 (1753)
..|||||+|...|
T Consensus 21 ddsyfqrkpklte 33 (35)
T 2lid_A 21 DDSYFQRKPKLTE 33 (35)
Confidence 3699999998765
No 19
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=28.37 E-value=96 Score=30.00 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=37.8
Q ss_pred ccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCc-eeeccccccccccCCCeEEEEEee
Q psy5848 1236 GQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPC-YSVSEIGAQQYDNFGKIFTVKLQF 1300 (1753)
Q Consensus 1236 ~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~-~~lS~~~lq~yd~~gKIHtVkl~~ 1300 (1753)
+.|.|++.|+-|.. ++|-+|....+.+|-..+.|... |.. . ..-+...|-|.++|.+
T Consensus 16 ~~k~Wk~rwfvL~~----~~L~~yk~~~~~~p~~~i~l~~~~~~~--~--~~~~~~~r~~~F~l~~ 73 (112)
T 3cxb_B 16 GKEHWKTCFVVLSN----GILYQYPDRTDVIPLLSVNMGGEQCGG--C--RRANTTDRPHAFQVIL 73 (112)
T ss_dssp SCCCCEEEEEEEET----TEEEEESSSSCCSCSEEEETTC-CEEE--E--EECCCSSCTTEEEEEE
T ss_pred CCCCceEEEEEEEC----CEEEEECCCCCCCccceEEecCCEEEe--e--eccCCCCCCeEEEEEc
Confidence 56899999999962 37888888888888777666632 321 0 1113456667777753
No 20
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=27.94 E-value=13 Score=52.11 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=8.0
Q ss_pred ceeeccceeeeec
Q psy5848 249 KLISLGCAVDVLA 261 (1753)
Q Consensus 249 k~vslg~avevl~ 261 (1753)
.+|.-|-||-+|+
T Consensus 1056 a~v~pGe~VG~ia 1068 (1733)
T 1twf_A 1056 SVVHPGEMVGVLA 1068 (1733)
T ss_dssp HBCCTTCCHHHHH
T ss_pred ccCCCCchhhhHh
Confidence 3566677776654
No 21
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.68 E-value=1.4e+02 Score=29.66 Aligned_cols=63 Identities=21% Similarity=0.423 Sum_probs=39.5
Q ss_pred ccCCCCceeeeeccccccc-cccccceEEEEEEEecCCc-ceEEEeccCC-CCCCCcccCCCCceeec
Q psy5848 1216 KYDGPGWEMHLRQPNKKKI-TGQRFWKKVFVKIVYHGEK-PVVHLYNKAD-DKDPFQELPLEPCYSVS 1280 (1753)
Q Consensus 1216 ~~~~~gW~~~lR~P~KK~~-~~~R~W~pi~vrl~~~g~~-~~lql~~ek~-~~~Pf~E~~Lq~~~~lS 1280 (1753)
.....||=+. | ..++++ ...+.|++-|+.|....++ ..|..|..+. +.+|-..+.|..|..+-
T Consensus 17 ~~~~~G~L~K-~-~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~ 82 (150)
T 1wg7_A 17 GITKHGWLYK-G-NMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVV 82 (150)
T ss_dssp CCCCEEEEEE-C-CCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEEC
T ss_pred CeeEEEEEEE-e-cCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEe
Confidence 3457899332 2 222222 2346899999999864222 2566666665 78899999998866553
No 22
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.61 E-value=71 Score=30.06 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=39.4
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEE
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKL 1298 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl 1298 (1753)
-+.|++-|+.|.. ..|..|..+++.+|-..+.|..++.|.... +..++-|.+.|
T Consensus 21 ~~~Wk~R~fvL~~----~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~----~~~~~~~~F~i 74 (115)
T 2dn6_A 21 RKNWTERWFVLKP----NIISYYVSEDLKDKKGDILLDENCCVESLP----DKDGKKCLFLV 74 (115)
T ss_dssp SSCEEEEEEEECS----SCEEEESSTTCSSEEEEECCCTTCEEEEEC----CCTTCCSEEEE
T ss_pred CCCcEEeEEEEEC----CEEEEeCCCCCcccCcEEEecCcEEEEECC----CCCCCeeEEEE
Confidence 3679999999973 378888878888999999999887775432 23355555555
No 23
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.19 E-value=1.3e+02 Score=28.43 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=39.4
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEEe
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQ 1299 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl~ 1299 (1753)
.+.|+.-|+.|.. ..|..|..+++.+|-..+.|..+..+.... +..++-|.+.|.
T Consensus 18 ~~~Wk~R~fvL~~----~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~----~~~~~~~~F~i~ 72 (113)
T 1pls_A 18 FNTWKPMWVVLLE----DGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ----DFGKRMFVFKIT 72 (113)
T ss_dssp SSCCEEEEEEEET----TEEEEESSTTCSSCSEEEESSSCCEESSCC----SSCCSSSEEEEE
T ss_pred CCCceEEEEEEEC----CEEEEEeCCCCCCcceEEEcCCCEEEEecC----CCCCCccEEEEE
Confidence 3689999999973 368888888889999999999888764211 234455566553
No 24
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=25.18 E-value=59 Score=32.41 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=36.7
Q ss_pred eeeccccccccccc-cceEEEEEEEecCCcceEEEeccCCCC---CCCcccCCCCceeecc
Q psy5848 1225 HLRQPNKKKITGQR-FWKKVFVKIVYHGEKPVVHLYNKADDK---DPFQELPLEPCYSVSE 1281 (1753)
Q Consensus 1225 ~lR~P~KK~~~~~R-~W~pi~vrl~~~g~~~~lql~~ek~~~---~Pf~E~~Lq~~~~lS~ 1281 (1753)
+|++|.+.++ -| .|++-|+-|.. .-|-+|..++++ +|-..+.|...+.|+-
T Consensus 6 wl~~pk~~~~--~k~~Wkkr~~vL~~----~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~ 60 (117)
T 2rov_A 6 WLSLPVRNNT--KKFGWVKKYVIVSS----KKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60 (117)
T ss_dssp EEECCCCSSS--SCCCCCEEEEEEET----TEEEEESCHHHHHTTCCSEEECGGGEEEEEE
T ss_pred EEEeecCCCc--cCCCcEEEEEEEEC----CEEEEEECCCCcccCCceEEEECcccEEEEE
Confidence 4777766553 34 69999999973 257777765544 8999999988887654
No 25
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=24.65 E-value=1.3e+02 Score=28.27 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=33.0
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeecc
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSE 1281 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~ 1281 (1753)
-+.|++-|+-|.. ..|..|..+.+.+|-..+.|..+..+..
T Consensus 21 ~~~Wk~RwfvL~~----~~L~yyk~~~~~~~~~~i~L~~~~~~~~ 61 (109)
T 1wgq_A 21 KKPWKHLWFVIKN----KVLYTYAASEDVAALESQPLLGFTVTLV 61 (109)
T ss_dssp TSCCEEEEEEEET----TEEEEESCTTCSSCSEEEECSSEEEEEC
T ss_pred CCCceeEEEEEeC----CEEEEECCCCcCccCceEECCCCEEEEC
Confidence 4789999999972 3788888888899998999887765543
No 26
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=24.64 E-value=1.4e+02 Score=28.65 Aligned_cols=69 Identities=16% Similarity=0.392 Sum_probs=43.8
Q ss_pred CCCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEE
Q psy5848 1218 DGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVK 1297 (1753)
Q Consensus 1218 ~~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVk 1297 (1753)
...||=+.. .-...+.|++-|+.|.. ..|..|..+.+.+|-..+.|.. |.|..... -+..++-|.+.
T Consensus 22 ~~~G~L~K~------~~~~~~~Wk~R~fvL~~----~~L~yy~~~~~~~~~g~i~L~~-~~v~~~~~--~~~~~~~~~F~ 88 (128)
T 2dkp_A 22 VRRGWLYKQ------DSTGMKLWKKRWFVLSD----LCLFYYRDEKEEGILGSILLPS-FQIALLTS--EDHINRKYAFK 88 (128)
T ss_dssp CEEEEEEEE------CCSSSCCEEEEEEEEET----TEEEEESSTTCCSEEEEECGGG-SEEEECCG--GGCCSSCSEEE
T ss_pred EEEEEEEEe------CCCCCCCceeEEEEEeC----CEEEEECCCCCcccceEEEcCc-eEEEEcCC--cccCCCCeEEE
Confidence 467884322 11134679999999962 3788888888889988888854 45543322 23345556666
Q ss_pred Ee
Q psy5848 1298 LQ 1299 (1753)
Q Consensus 1298 l~ 1299 (1753)
|.
T Consensus 89 i~ 90 (128)
T 2dkp_A 89 AA 90 (128)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 27
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=1.2e+02 Score=28.93 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=38.4
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEE
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKL 1298 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl 1298 (1753)
.+.|++-|+.|.. ..|..|....+.+|-..+.|..+. |..... -+..++-|.+.|
T Consensus 36 ~~~Wk~R~fvL~~----~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~--~~~~~~~~~F~i 90 (122)
T 2yry_A 36 VKQWNKRWFVLVD----RCLFYYKDEKEESILGSIPLLSFR-VAAVQP--SDNISRKHTFKA 90 (122)
T ss_dssp SCCEEEEEEEEET----TEEEEESSTTCCSCCEEEESTTCC-CEECCT--TCSCSSSSEEEE
T ss_pred CCCcEEEEEEEeC----CEEEEECCCCCCCcccEEEcCCCE-EEEcCc--cccCCcccEEEE
Confidence 3689999999962 378888888889998888888765 433221 133455566666
No 28
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=22.76 E-value=3.6 Score=49.03 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCCCCCceecccCCCcc-----------------cccccCCCCCcc---cccccccchhHhhhhcccccc
Q psy5848 826 ILDNKEPPIIPRDSSDLTYNTSTPSSR-----------------KASITNPEAPRK---YSKENVIDNDVLIQNAINSRK 885 (1753)
Q Consensus 826 p~dfl~~pI~P~~~sdTLWn~~tps~~-----------------e~SEi~~e~~RK---~~~~n~l~~~ramq~Sl~ae~ 885 (1753)
=+.+.|.+|.+ ...|+|+......- .....+....+| ....-+|+..|+++.+|.+..
T Consensus 9 lK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~~~k~~~~~~v~lLd~kraqNi~I~L~~ 86 (411)
T 1ux5_A 9 LKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGINLHM 86 (411)
T ss_dssp BCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHHHHHTGG
T ss_pred CCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccccccccCCCCeeeecChHHHHHHHHHHHh
Confidence 57899999998 78899998754210 000011111111 122348999999999998753
Q ss_pred c--cc--cccccccCCCceeeeeccccccccccccCCCcccccccccccccccccCCCCccccccccc
Q psy5848 886 S--SQ--DVVTSRKSSQDIQRITSASQSRKASNEVAPDVFSQQITSTNIIENYTTDSSPFIEDHATAV 949 (1753)
Q Consensus 886 q--~~--~~vt~~~tsp~idmsele~l~~~s~~E~nPf~~~~~i~~~~~~~n~a~~~sp~~~d~~~~~ 949 (1753)
- .+ +... -|.-++.+.|+....++ |+.+.+| .++..++.+++.|+.+++++..
T Consensus 87 ~~~~~~~ei~~------ai~~~D~~~L~~~~lie---~L~~~~~--~ei~~~L~~~~~P~~~e~e~l~ 143 (411)
T 1ux5_A 87 YSSLSVADLVK------KILNCDRDFLQTPSVVE---FLSKSEI--IEVSVNLARNYAPYSTDWEGVR 143 (411)
T ss_dssp GTTSCHHHHHH------HHHTTTHHHHTCHHHHH---HTTCHHH--HCCCHHHHHHTGGGCCCCTTCC
T ss_pred cCCCCHHHHHH------HHHhcChhhcCHHHHHH---HhchhHH--HhhHHHHHHhcCCCchhHHHHH
Confidence 1 11 1222 23344445565545566 6667777 6777788889999999987544
No 29
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.33 E-value=1.5e+02 Score=27.90 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=38.2
Q ss_pred cccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEEE
Q psy5848 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKL 1298 (1753)
Q Consensus 1237 ~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl 1298 (1753)
.+.|++-|+.|.. ..|..|....+.+|-..+.|..+. |..... -+..++-|.+.|
T Consensus 25 ~~~Wk~R~fvL~~----~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~--~~~~~~~~~F~i 79 (117)
T 2d9y_A 25 VKQWNKRWFVLVD----RCLFYYKDEKEESILGSIPLLSFR-VAAVQP--SDNISRKHTFKA 79 (117)
T ss_dssp SSCEEEEEEEEET----TEEEEESSTTCCSCCEEEECSSCE-EEECCT--TTTCCCSSEEEE
T ss_pred CCCceEEEEEECC----CEEEEECCCCCCCcCCEEEeCCeE-EEEcCc--cccCCCccEEEE
Confidence 4789999999962 378888888889998888888765 332211 233455566666
Done!