RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5848
(1753 letters)
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of
adaptor-like proteins (AP-like), stonins. A small family
of proteins named stonins has been characterized as
clathrin-dependent AP-2 mu2 chain related factors, which
may act as cargo-specific sorting adaptors in
endocytosis. Stonins include stonin 1 and stonin 2, which
are only mammalian homologs of Drosophila stoned B, a
presynaptic protein implicated in neurotransmission and
synaptic vesicle (SV) recycling. They are conserved from
C. elegans to humans, but are not found in prokaryotes or
yeasts. This family corresponds to the mu homology domain
of stonins, which is distantly related to the C-terminal
domain of mu chains among AP complexes. Due to the low
degree of sequence conservation of the corresponding
binding site, the mu homology domain of stonins is unable
to recognize tyrosine-based endocytic sorting signals. To
data, little is known about the localization and function
of stonin 1. Stonin 2, also known as stoned B, acts as an
AP-2-dependent synaptotagmin-specific sorting adaptors
for SV endocytosis. Stoned A is not a stonin. It is
structurally unrelated to the adaptins and does not
appear to have mammalian homologs. It is not included in
this family.
Length = 308
Score = 480 bits (1238), Expect = e-157
Identities = 183/320 (57%), Positives = 237/320 (74%), Gaps = 13/320 (4%)
Query: 1390 HRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLV 1449
+RDR LTY+ +E+ + VDE + + G ILKQ RVR+F L F++GMP+ ELG+ND+
Sbjct: 1 YRDRGLTYREDEITVDVVDEFRGKVTKEGEILKQAVRVRIFCLAFVTGMPECELGLNDIQ 60
Query: 1450 RQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
R+G+EVV R DIIPV TEEWI+LE VEFHSCV +DE+E+ R IKF P DAC ELMRFRV
Sbjct: 61 RKGREVVRRQDIIPVSTEEWIKLENVEFHSCVNKDEFEQSRVIKFHPLDACRFELMRFRV 120
Query: 1510 RPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRK-LGQIPCEDIMVRFPIPECWIY 1568
RPPR RELPL +K+V+ V G VELRAD+LVPG+ SR LGQ+PCE+IM+RFP+PE W+Y
Sbjct: 121 RPPRERELPLTVKSVVSVKGAHVELRADLLVPGYTSRNPLGQVPCENIMIRFPVPEEWVY 180
Query: 1569 LFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWR 1628
LFRVEKHFRY S+KS +R GK+K A + L P L+EV+ G +KYEH +R+IVWR
Sbjct: 181 LFRVEKHFRYKSLKSKKKRPGKIK------SARELLSPPLIEVSVGTAKYEHAYRAIVWR 234
Query: 1629 MPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVS 1688
+PRLP++ +YT H L CR+ L S D+IP + + VEFTMP+T S TTVRS+S
Sbjct: 235 IPRLPEKNSAAYTPHLLSCRLELASDDEIPSSFYPHAE---VEFTMPSTTASKTTVRSIS 291
Query: 1689 ISNSDSDVPPEKYVRHLARH 1708
+SN + PEK+VR+LA++
Sbjct: 292 VSN---ENIPEKFVRYLAKY 308
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like
protein (AP-like), stonin-2. A small family of proteins
named stonins has been characterized as
clathrin-dependent AP-2 mu2 chain related factors, which
may act as cargo-specific sorting adaptors in
endocytosis. Stonins include stonin 1 and stonin 2, which
are the only mammalian homologs of Drosophila stoned B, a
presynaptic protein implicated in neurotransmission and
synaptic vesicle (SV) recycling. They are conserved from
C. elegans to humans, but are not found in prokaryotes or
yeasts. This family corresponds to the mu homology domain
of stonin 2, which is distantly related to the C-terminal
domain of mu chains among AP complexes. Due to the low
degree of sequence conservation of the corresponding
binding site, the mu homology domain of stonin-2 is
unable to recognize tyrosine-based endocytic sorting
signals. It acts as an AP-2-dependent
synaptotagmin-specific sorting adaptor for SV
endocytosis.
Length = 314
Score = 224 bits (573), Expect = 2e-65
Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 19/323 (5%)
Query: 1395 LTYKMEEVQITTVDEIY-VEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGK 1453
L Y EE+ + DE + + IL+ R++ L FLSG+ + LG+ND++ +G
Sbjct: 6 LNYTEEEITVDVRDEFHGILSKGDSRILQHSVLTRIYILSFLSGLAECRLGLNDILIKGN 65
Query: 1454 EVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPR 1513
EVV R DI+P T +WI+L FH CV +D + R I F P DAC ELMRFR
Sbjct: 66 EVVARQDIMPTTTTKWIQLHECRFHECVDEDMFNNSRAILFNPLDACRFELMRFRT-VFA 124
Query: 1514 NRELPLQLKAVMCVTGNKVELRADILVP-GFVSRK--LGQIPCEDIMVRFPIPECWIYLF 1570
+ LP L+ CV G +VE+++ +++ GF S + L Q+PCE++M+R+P+PE W+
Sbjct: 125 EKTLPFTLRTAACVNGAEVEVQSWLVMSTGFSSNRDPLTQVPCENVMIRYPVPEEWV--- 181
Query: 1571 RVEKHFRYGSVKSAHRRTGKV-KGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629
K+FR SV KV KG ++ EP M VT G +KYEH S+VWR+
Sbjct: 182 ---KNFRRESVLGEKSLKAKVNKGASFGSTSLSGSEP-AMRVTLGTAKYEHAFNSVVWRI 237
Query: 1630 PRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSI 1689
RLP + S H C + L S ++P + + VEF MP S VRS+S+
Sbjct: 238 NRLPDKNSASGHPHCFFCHLELGSDREVPS---SFVCHVEVEFDMPTASASKAAVRSLSV 294
Query: 1690 SNSDSDVPPEKYVRHLARHEYRV 1712
+ +DV +K+V + A + Y+V
Sbjct: 295 EDK-TDV--KKWVNYSAHYSYQV 314
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like
protein (AP-like), stonin-1 (also called Stoned B-like
factor). A small family of proteins named stonins has
been characterized as clathrin-dependent AP-2 mu2 chain
related factors, which may act as cargo-specific sorting
adaptors in endocytosis. Stonins include stonin 1 and
stonin 2, which are the only mammalian homologs of
Drosophila stoned B, a presynaptic protein implicated in
neurotransmission and synaptic vesicle (SV) recycling.
They are conserved from C. elegans to humans, but are not
found in prokaryotes or yeasts. This family corresponds
to the mu homology domain of stonin 1, which is distantly
related to the C-terminal domain of mu chains among AP
complexes. Due to the low degree of sequence conservation
of the corresponding binding site, the mu homology domain
of stonin-1 is unable to recognize tyrosine-based
endocytic sorting signals. To data, little is known about
the localization and function of stonin-1.
Length = 309
Score = 178 bits (453), Expect = 2e-49
Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 23/317 (7%)
Query: 1397 YKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVV 1456
Y+ +E+ + VD + ++ G +++ ++ L F++ + L +NDL Q ++
Sbjct: 8 YEEQELSLEIVDHFWGRVDKEGKVMESSVITQIHCLCFVNAPAECFLTLNDLELQKRD-- 65
Query: 1457 GRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRE 1516
+ WI + FH CV E+ + R IKF PPDAC ELMRF+ R +
Sbjct: 66 -EDYFEKEAGKLWIEILDYHFHKCVNAQEFHQSRLIKFCPPDACRFELMRFKTR-YNGGD 123
Query: 1517 LPLQLKAVMCVTGNKVELRADI-LVPGF-VSRKLGQIP-CEDIMVRFPIPECWIYLFRVE 1573
LP +KA++ V G VEL+A + + P F G +P CE++ +RFP+P W+
Sbjct: 124 LPFSVKAMVVVQGAYVELQAFLNMAPTFPTFGVAGSLPYCENVEIRFPVPAQWVKALWTM 183
Query: 1574 KHFRYGSVKS-AHRRTGKVKGIERFLGAVDNLEPQ-LMEVTSGQSKYEHQHRSIVWRMPR 1631
R S+K+ +RR LG+ E + +++V+ G +KYE+ +R++VW++ R
Sbjct: 184 SLQRQRSLKAKMNRRA--------CLGSALEAESEPVIQVSVGTAKYENAYRAVVWKIDR 235
Query: 1632 LPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISN 1691
LP + H+L C++ L S +IP D + +A VEF + T S T V+S+ I
Sbjct: 236 LPDKNSAVDHPHSLSCKLELGSDQEIPSDWYP---FATVEFEVEDTCASGTRVKSLGI-- 290
Query: 1692 SDSDVPPEKYVRHLARH 1708
+SD+ P+K+V A +
Sbjct: 291 -ESDMQPQKHVTSRACY 306
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP)
complexes medium mu subunits and its homologs (MHD).
This family corresponds to the C-terminal domain of
heterotetrameric AP complexes medium mu subunits and its
homologs existing in monomeric stonins, delta-subunit of
the heteroheptameric coat protein I (delta-COPI), a
protein encoded by a pro-death gene referred as MuD (also
known as MUDENG, mu-2 related death-inducing gene), an
endocytic adaptor syp1, the mammalian FCH domain only
proteins (FCHo1/2), SH3-containing GRB2-like protein
3-interacting protein 1 (SGIP1), and related proteins. AP
complexes participate in the formation of intracellular
coated transport vesicles and select cargo molecules for
incorporation into the coated vesicles in the late
secretory and endocytic pathways. Stonins have been
characterized as clathrin-dependent AP-2 mu chain related
factors and may act as cargo-specific sorting adaptors in
endocytosis. Coat protein complex I (COPI)-coated
vesicles function in the early secretory pathway. They
mediate the retrograde transport from the Golgi to the
ER, and intra-Golgi transport. MuD is distantly related
to the C-terminal domain of mu2 subunit of AP-2. It is
able to induce cell death by itself and plays an
important role in cell death in various tissues. Syp1
represents a novel type of endocytic adaptor protein that
participates in endocytosis, promotes vesicle tabulation,
and contributes to cell polarity and stress responses. It
shares the same domain architecture with its two
ubiquitously expressed mammalian counterparts, FCHo1/2,
which represent key initial proteins ultimately
controlling cellular nutrient uptake, receptor
regulation, and synaptic vesicle retrieval. They bind
specifically to the plasma membrane and recruit the
scaffold proteins eps15 and intersectin, which
subsequently engage the adaptor complex AP2 and clathrin,
leading to coated vesicle formation. Another mammalian
neuronal-specific protein SGIP1 does have a C-terminal
MHD and has been classified into this family as well. It
is an endophilin-interacting protein that plays an
obligatory role in the regulation of energy homeostasis.
It is also involved in clathrin-mediated endocytosis by
interacting with phospholipids and eps15.
Length = 239
Score = 90.2 bits (224), Expect = 9e-20
Identities = 72/312 (23%), Positives = 127/312 (40%), Gaps = 79/312 (25%)
Query: 1401 EVQITTVDEIYVEQNETGSILKQ--IARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGR 1458
EV + ++++ + ++ GS+L + + L FLSGMP+I LG+N+
Sbjct: 1 EVFLDVIEKVNLLISKDGSLLNSEVVGEIAL--KSFLSGMPEIRLGLNN----------- 47
Query: 1459 HDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELP 1518
P V I+L+ V FH CV+ +E R I F PPD ELM +R LP
Sbjct: 48 ----PDV---GIKLDDVSFHPCVRLKRFESERIISFIPPD-GEFELMSYRTV-LEEPILP 98
Query: 1519 LQLKAVMCVTGNKVELRADI-LVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFR 1577
+ + V+ G ++E+ + L Q+ E++ V P+P
Sbjct: 99 ITIFPVVSEEGGRLEVTVKLKLSESL------QLTAENVEVHIPLP-------------- 138
Query: 1578 YGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQ 1637
V +L + + GQ+K++ + ++VWR+ R+P G+
Sbjct: 139 ---------------------SGVTSLS---SKPSDGQAKFDPEKNALVWRIKRIPVGGK 174
Query: 1638 GSYTTHNLVCRMALTS-YDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDS-D 1695
+L L + P++ + + F +P T S VRS+ + + +
Sbjct: 175 E----QSLSATFELGGLAHECPEEAPPV----SLSFEIPETTGSGIQVRSLQVFDEKNPG 226
Query: 1696 VPPEKYVRHLAR 1707
P K+VR+
Sbjct: 227 HDPIKWVRYSTH 238
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family.
This family also contains members which are coatomer
subunits.
Length = 228
Score = 89.0 bits (221), Expect = 2e-19
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 1388 PVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVND 1447
R + YK EV + ++ + V ++ G IL + + +LSGMP++ LG+ND
Sbjct: 1 VPWRPSGIKYKKNEVFLDVIERVSVIVDKDGGILNSEIQGTIDCKCYLSGMPELTLGLND 60
Query: 1448 LVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRF 1507
+ GK + I L+ V FH CV+ +E R I F PPD + LM +
Sbjct: 61 PLNIGKI---------ASSGNGIELDDVSFHPCVRLSRFESERVISFIPPDGEF-TLMSY 110
Query: 1508 RVRPPRNRELPLQLKA 1523
R+ N LP ++
Sbjct: 111 RIS--SNVPLPFKVNP 124
Score = 57.1 bits (138), Expect = 1e-08
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 1609 MEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYA 1668
+ V+ G++KY+ + ++ W + ++P L + L+S + P +
Sbjct: 128 LTVSDGKAKYDPEENALEWTIGKIPGG-----KEPTLSGELELSSTSESPSKDWSF-PPI 181
Query: 1669 YVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLARH 1708
VEF++P S VRS+ IS S+ P K+VR++ +
Sbjct: 182 SVEFSIPGFTASGLKVRSLKISEPKSNYKPYKWVRYVTKS 221
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in
ubiquitously expressed clathrin-associated adaptor
protein (AP) complex AP-2. AP complexes participate in
the formation of intracellular coated transport vesicles
and select cargo molecules for incorporation into the
coated vesicles in the late secretory and endocytic
pathways. There are four AP complexes, AP-1, -2, -3, and
-4, described in various eukaryotic organisms. Each AP
complex consists of four subunits: two large chains (one
each of gamma/alpha/delta/epsilon and beta1-4,
respectively), a medium mu chain (mu1-4), and a small
sigma chain (sigma1-4). Each of the four subunits from
the different AP complexes exhibits similarity with each
other. This family corresponds to the C-terminal domain
of heterotetrameric clathrin-associated adaptor protein
complex 2 (AP-2) medium mu2 subunit. Mu2 is ubiquitously
expressed in mammals. In higher eukaryotes, AP-2 plays a
critical role in clathrin-mediated endocytosis from the
plasma membrane in different cells. The membrane-anchored
cargo molecules can be linked to the outer lattice of
CCVs by AP-2. Those cargo molecules interact with
adaptors through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-2 mu2 subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding. Since the Y-X-X-Phi binding site is
buried in the core structure of AP-2, a phosphorylation
induced conformational change is required when the cargo
molecules binds to AP-2. In addition, the C-terminal
domain of mu2 subunit has been shown to bind other
molecules. For instance, it can bind phosphoinositides,
in particular PI[4,5]P2, which might be involved in the
recognition process of the tyrosine-based signals. It can
also interact with synaptotagmins, a family of important
modulators of calcium-dependent neurosecretion within the
synaptic vesicle (SV) membrane. Since many of the other
endocytic adaptors responsible for biogenesis of synaptic
vesicles exist, in the absence of AP-2, clathrin-mediated
endocytosis can still occur. However, the cells may not
survive in the complete absence of clathrin as well as
AP-2.
Length = 263
Score = 80.3 bits (199), Expect = 3e-16
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 58/260 (22%)
Query: 1397 YKMEEVQITTVDEIYVEQNETGSILKQIARV--RLFFLGFLSGMPDIELGVNDLVRQGKE 1454
Y+ EV + V+ + + + TG++L+ A V + FLSGMP+ + G+ND + KE
Sbjct: 1 YRKNEVFLDVVESVNLLMSSTGTVLR--ADVDGVIVMKAFLSGMPECKFGLNDKLVLEKE 58
Query: 1455 VVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRN 1514
G+ + + L+ +FH CV+ +++ RTI F PPD + ELMR+R+ N
Sbjct: 59 --GKAKSGDKAAKGSVELDDCKFHQCVRLSKFDSERTISFIPPDGEF-ELMRYRIT--EN 113
Query: 1515 RELPLQLKA-VMCVTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVE 1573
LP ++ V V K+E + + + KL +++V+ P P+
Sbjct: 114 INLPFKVLPLVKEVGRTKLEYK--VKIKSNFPPKL---FATNVVVKIPTPK--------- 159
Query: 1574 KHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLP 1633
T KV + V+ G++KY+ + +IVW++ + P
Sbjct: 160 -------------NTAKVT----------------VSVSKGKAKYDPEENAIVWKIKKFP 190
Query: 1634 KEGQGSYTTHNLVCRMALTS 1653
G T L + L S
Sbjct: 191 --GM---TESTLSAEVELLS 205
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in
adaptor protein (AP) complex AP-4. AP complexes
participate in the formation of intracellular coated
transport vesicles and select cargo molecules for
incorporation into the coated vesicles in the late
secretory and endocytic pathways. There are four AP
complexes, AP-1, AP-2, AP-3, and AP-4, described in
various eukaryotic organisms. Each AP complex consists of
four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
family corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 4 (AP-4) medium
mu4 subunit. AP-4 plays a role in signal-mediated
trafficking of integral membrane proteins in mammalian
cells. Unlike other AP complexes, AP-4 is found only in
mammals and plants. It is believed to be part of a
nonclathrin coat, since it might function independently
of clathrin, a scaffolding protein participating in the
formation of coated vesicles. Recruitment of AP-4 to the
trans-Golgi network (TGN) membrane is regulated by a
small GTPase, ADP-ribosylation factor 1 (ARF1) or a
related protein. Membrane-anchored cargo molecules
interact with adaptors through short sorting signals in
their cytosolic segments. One of the most important
sorting signals binding to mu subunits of AP complexes
are tyrosine-based endocytotic signals, which are of the
form Y-X-X-Phi, where Y is tyrosine, X is any amino acid
and Phi is a bulky hydrophobic residue that can be Leu,
Ile, Met, Phe, or Val. However, AP-4 does not bind most
canonical tyrosine-based signals except for two naturally
occurring ones from the lysosomal membrane proteins CD63
and LAMP-2a. It binds YX [FYL][FL]E motif, where X can be
any residue, from the cytosolic tails of amyloid
precursor protein (APP) family members in a distinct way.
Length = 271
Score = 76.9 bits (190), Expect = 5e-15
Identities = 62/279 (22%), Positives = 111/279 (39%), Gaps = 69/279 (24%)
Query: 1434 FLSGMPDIELGVN-DLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTI 1492
+LSG P++ L +N DLV +G+ + + + L+ FH CV +E+E RT+
Sbjct: 45 YLSGNPELRLALNEDLV------IGKRENRAYSSA--VVLDDCNFHECVDLEEFESDRTL 96
Query: 1493 KFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNK-----VELRADILVPGFVSRK 1547
PPD + LM +R+ + P ++ + T ++LRAD
Sbjct: 97 SLTPPDGEFT-LMNYRI--SGEFKPPFRVFPSVEETSPYKLELVLKLRADFPP------- 146
Query: 1548 LGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQ 1607
++ +++VR P+P+ SA
Sbjct: 147 --KVTATNVVVRIPLPK---------------GTSSASCELSSGA--------------- 174
Query: 1608 LMEVTSGQSK-YEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQ 1666
SGQS Y+ + + +VW + + P + H+L ++ L+S IP +
Sbjct: 175 -----SGQSAEYKEKEKRVVWNIKKFPGGTE-----HSLRIKITLSS--PIPSAVRKEIG 222
Query: 1667 YAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHL 1705
+ F +P VS V+ + IS S P ++VR++
Sbjct: 223 PISLTFEIPMYNVSGLQVKYLRISEKSSSYNPHRWVRYI 261
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in
epithelial cell-specific clathrin-associated adaptor
protein (AP) complex AP-1. AP complexes participate in
the formation of intracellular coated transport vesicles
and select cargo molecules for incorporation into the
coated vesicles in the late secretory and endocytic
pathways. There are four AP complexes, AP-1, AP-2, AP-3,
and AP-4, described in various eukaryotic organisms. Each
AP complex consists of four subunits: two large chains
(one each of gamma/alpha/delta/epsilon and beta1-4,
respectively), a medium mu chain (mu1-4), and a small
sigma chain (sigma1-4). Each of the four subunits from
different AP complexes exhibits similarity with each
other. This subfamily corresponds to the C-terminal
domain of heterotetrameric clathrin-associated adaptor
protein complex 1 (AP-1) medium mu1B subunit encoded by
ap1m2 gene exclusively expressed in polarized epithelial
cells. Epithelial cell-specific AP-1 is used to sort
proteins to the basolateral plasma membrane, which
involves the formation of clathrin-coated vesicles (CCVs)
from the trans-Golgi network (TGN). Recruitment of AP-1
to the TGN membrane is regulated by a small GTPase,
ADP-ribosylation factor 1 (ARF1). The
phosphorylation/dephosphorylation events can also
regulate the function of AP-1. The membrane-anchored
cargo molecules can be linked to the outer lattice of
CCVs by AP-1. Those cargo molecules interact with
adaptors through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-1 mu1B subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
reside-binding. Besides, AP-1 mu1B subunit mediates the
basolateral recycling of low-density lipoprotein receptor
(LDLR) and transferrin receptor (TfR) from the sorting
endosomes, where the basolateral sorting signal does not
belong to the tyrosine-based signals. Thus, the binding
site in mu1B subunit of AP-1 for the signals of LDLR and
TfR might be distinct from that for YXXPhi signals.
Length = 264
Score = 67.0 bits (163), Expect = 1e-11
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQ--IARVRLFFLGFLSGMPDIELGVNDL 1448
R + YK EV I ++ + + N GS+L+ + ++L FLSGMP++ LG+ND
Sbjct: 7 RSEGIKYKKNEVFIDVIESVNLLVNANGSVLRSEIVGAIKLKV--FLSGMPELRLGLNDR 64
Query: 1449 VRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
V E+ GR + + LE V+FH CV+ +E RTI F PPD ELM +R
Sbjct: 65 VL--FELTGRE------KNKTVELEDVKFHQCVRLSRFENDRTISFIPPDGES-ELMSYR 115
Query: 1509 V 1509
+
Sbjct: 116 L 116
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in
clathrin-associated adaptor protein (AP) complex AP-1.
AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are four
AP complexes, AP-1, AP-2, AP-3, and AP-4, described in
various eukaryotic organisms. Each AP complex consists of
four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
family corresponds to the C-terminal domain of
heterotetrameric clathrin-associated adaptor protein
complex 1 (AP-1) medium mu1 subunit, which includes two
closely related homologs, mu1A (encoded by ap1m1) and
mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed,
but mu1B is expressed exclusively in polarized epithelial
cells. AP-1 has been implicated in bi-directional
transport between the trans-Golgi network (TGN) and
endosomes. It plays an essential role in the formation of
clathrin-coated vesicles (CCVs) from the trans-Golgi
network (TGN). Epithelial cell-specific AP-1 is also
involved in sorting to the basolateral surface of
polarized epithelial cells. Recruitment of AP-1 to the
TGN membrane is regulated by a small GTPase,
ADP-ribosylation factor 1 (ARF1).
Phosphorylation/dephosphorylation events can also
regulate the function of AP-1. The membrane-anchored
cargo molecules can be linked to the outer lattice of
CCVs by AP-1. Those cargo molecules interact with
adaptors through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-1 mu1 subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding.
Length = 268
Score = 59.9 bits (146), Expect = 2e-09
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 1434 FLSGMPDIELGVNDLV---RQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGR 1490
+LSGMP+++LG+ND V G+ G+ + LE V+FH CV+ +E R
Sbjct: 50 YLSGMPELKLGLNDKVLFEATGRSSKGKA----------VELEDVKFHQCVRLSRFENDR 99
Query: 1491 TIKFKPPDACYIELMRFRV 1509
TI F PPD + ELM +R+
Sbjct: 100 TISFIPPDGEF-ELMSYRL 117
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in
ubiquitously expressed clathrin-associated adaptor
protein (AP) complex AP-1. AP complexes participate in
the formation of intracellular coated transport vesicles
and select cargo molecules for incorporation into the
coated vesicles in the late secretory and endocytic
pathways. There are four AP complexes, AP-1, AP-2, AP-3,
and AP-4, described in various eukaryotic organisms. Each
AP complex consists of four subunits: two large chains
(one each of gamma/alpha/delta/epsilon and beta1-4,
respectively), a medium mu chain (mu1-4), and a small
sigma chain (sigma1-4). Each of the four subunits from
the different AP complexes exhibits similarity with each
other. This subfamily corresponds to the C-terminal
domain of heterotetrameric clathrin-associated adaptor
protein complex 1 (AP-1) medium mu1A subunit encoded by
ap1m1 gene, which is ubiquitously expressed in all
mammalian tissues and cells. AP-1 has been implicated in
bidirectional transport between the trans-Golgi network
(TGN) and endosomes. It is involved in the formation of
clathrin-coated vesicles (CCVs) from the trans-Golgi
network (TGN). The ubiquitous AP-1 is recruited to the
TGN membrane, as well as to immature secretory granules.
Recruitment of AP-1 to the TGN membrane is regulated by a
small GTPase, ADP-ribosylation factor 1 (ARF1).
Phosphorylation/dephosphorylation events can also
regulate the function of AP-1. The membrane-anchored
cargo molecules can be linked to the outer lattice of
CCVs by AP-1. Those cargo molecules interact with
adaptors through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-1 mu1A subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding.
Length = 270
Score = 59.9 bits (145), Expect = 2e-09
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ EV + ++ + + + G++L+ + +LSGMP++ LG+ND V
Sbjct: 8 RSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVYLSGMPELRLGLNDKVL 67
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
E GR + + LE V+FH CV+ +E RTI F PPD + ELM +R+
Sbjct: 68 --FENTGRG------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRL 117
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 57.6 bits (139), Expect = 7e-08
Identities = 49/213 (23%), Positives = 72/213 (33%), Gaps = 7/213 (3%)
Query: 644 TPRRP-PPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPT 702
+P P PP V+ P+ TS+ P P + S +P
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Query: 703 PDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEP 762
DV+ + P + P V+ + R + S ++P + P+ PP A P
Sbjct: 2860 GDVRRR---PPSRSPAAKPAAPARP-PVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPA 822
P P P PP P P PP P P +P+P + VP R A
Sbjct: 2916 PPQPQ--PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
Query: 823 PPKILDNKEPPIIPRDSSDLTYNTSTPSSRKAS 855
P+ + P +S T SR +S
Sbjct: 2974 VPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
Score = 53.8 bits (129), Expect = 1e-06
Identities = 48/234 (20%), Positives = 72/234 (30%), Gaps = 39/234 (16%)
Query: 642 DQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSP-- 699
D PPPP P ++ D P P RD +P
Sbjct: 2620 DTHAPDPPPPSP-------------------SPAANEPDPHPPPTVPPPERPRDDPAPGR 2660
Query: 700 -SPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEP-PKLPPT 757
S + P P+ + V S+T L + P P P P
Sbjct: 2661 VSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT-----SLADPPPPPPTPEPAPHAL 2715
Query: 758 IPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI-PPQRPPVPPIPEPKVAPS 816
+ A P P+ + P+ P+ P P+ P P P RPP P P+
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPA--VPAGPATPGGPARPARPPTTAGPPAPAPPA 2773
Query: 817 VPARPAPPK--------ILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
PA P + + +++E P D +D P++ +P P
Sbjct: 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
Score = 51.9 bits (124), Expect = 4e-06
Identities = 49/234 (20%), Positives = 63/234 (26%), Gaps = 28/234 (11%)
Query: 647 RPPPP-------RPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSP 699
RP P RP PP + R A +P P P
Sbjct: 2576 RPSEPAVTSRARRPDAPPQ--------SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPP 2627
Query: 700 SPTPDVQHQNLMGDEDIT---PIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTE---PPK 753
P+P T P P+ P V R S P +
Sbjct: 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRA 2687
Query: 754 LPPTIP-----AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
PT+ A+PP PP+ P L + P P + P P VP
Sbjct: 2688 ARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG 2747
Query: 809 PEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P P+ PARP PP P + P+ S + P
Sbjct: 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR--LTRPAVASLSESRESLP 2799
Score = 51.5 bits (123), Expect = 5e-06
Identities = 51/252 (20%), Positives = 77/252 (30%), Gaps = 37/252 (14%)
Query: 644 TPRRPPPPR--PVIPPSKETKDLILTVTGHMEATSSHLDRCHA-----ARTPSPTPMRDI 696
P P PP PP + T+ + +++ E+ S D A + P
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824
Query: 697 HSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLM---DDLENSPSIPTEPPK 753
P P P P P P + D+ P P+ P
Sbjct: 2825 AGPLPPP----------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP--PSRSPA 2872
Query: 754 LPPTIPAEP-------PKLPPSV------PSEPPKLPPSIPSEPPKIPPSIPTEP-PKIP 799
P PA P P + S P +P + P PP+ P P P P+ P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPS-SRKASITN 858
P PP P P A + ++P + + P+ SR+A ++
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
Query: 859 PEAPRKYSKENV 870
+S V
Sbjct: 2993 TPPLTGHSLSRV 3004
Score = 50.7 bits (121), Expect = 9e-06
Identities = 49/199 (24%), Positives = 60/199 (30%), Gaps = 33/199 (16%)
Query: 684 AARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVT-----RNLM 738
AA P D +P P P ++ DE V EP H + +T L
Sbjct: 2494 AAPDPGGGGPPDPDAP-PAPSRLAPAILPDE--------PVGEPVHPRMLTWIRGLEELA 2544
Query: 739 DDLENSPSIPTEPPKLPPTIPAE--PPKLPPSVPSEP--------PKLPPS-----IPSE 783
D P P PP PP P PP P PSEP P PP P +
Sbjct: 2545 SDDAGDPP-PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVD 2603
Query: 784 PPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLT 843
P P P P PP P P A + P P P D +
Sbjct: 2604 DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP---PTVPPPERPRDDPAPGR 2660
Query: 844 YNTSTPSSRKASITNPEAP 862
+ + R +P
Sbjct: 2661 VSRPRRARRLGRAAQASSP 2679
Score = 48.8 bits (116), Expect = 4e-05
Identities = 32/144 (22%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 686 RTPSPTPMRDIHS-PSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENS 744
TP P P + + P P + P P + P R
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P P PP P P P + P +P P ++ +PP P
Sbjct: 2766 PPAPA-PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824
Query: 805 VPPIPEP----KVAPSVPARPAPP 824
P+P P AP P P PP
Sbjct: 2825 AGPLPPPTSAQPTAPPPPPGPPPP 2848
Score = 46.9 bits (111), Expect = 1e-04
Identities = 55/240 (22%), Positives = 76/240 (31%), Gaps = 38/240 (15%)
Query: 645 PRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSP---SP 701
PR P PP P +PP D ++ D P P RD +P S
Sbjct: 2608 PRGPAPPSP-LPPDTHAPD---PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
Query: 702 TPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLP------ 755
+ P P+ + V S+T L + P P P P
Sbjct: 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGSLT-----SLADPPPPPPTPEPAPHALVSA 2718
Query: 756 --------------PTIPAEPPKLPPSVPSEP--PKLPPSIPSEPPKIPPSIPTEPPKIP 799
P +PA P PP+VP+ P P P P P P PP P
Sbjct: 2719 TPLPPGPAAARQASPALPAAP--APPAVPAGPATPGGPARPARPPTTAGPPAPA-PPAAP 2775
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNP 859
PP + P VA +R + P D +PP + ++P+ T+
Sbjct: 2776 AAGPP-RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
Score = 45.7 bits (108), Expect = 3e-04
Identities = 49/217 (22%), Positives = 62/217 (28%), Gaps = 31/217 (14%)
Query: 646 RRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDV 705
PPPP P G A + AA P P P
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQA-SPALPAAPAPPAVPAGPATPGGPARPA 2758
Query: 706 QHQNLMGDEDIT-PIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPK 764
+ G P P + +L + E+ PS P +P P + A
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS-PWDPADPPAAVLAPAAA 2817
Query: 765 LPPSVPSEPPKLPPSIPSE-PPKIPPSIPTE----------------------PPKIP-- 799
LPP+ P PP+ P PP P P P
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAA 2877
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
P RPPV + P V+ S + PP D E P P
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPP---DQPERPPQP 2911
Score = 43.8 bits (103), Expect = 0.001
Identities = 47/199 (23%), Positives = 59/199 (29%), Gaps = 26/199 (13%)
Query: 645 PRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPD 704
P PP P P + G ME S L R P P R P+ TP
Sbjct: 307 LALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSP-LPR-PRQHYPLGFPKR--RRPTWTPP 362
Query: 705 VQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPK 764
++L P+ S P + R+ P + P PA P
Sbjct: 363 SSLEDLSAGRH----HPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPV-PASVPT 417
Query: 765 LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAP- 823
P+ P PP PP P P PP +P + PA P
Sbjct: 418 --PAPTPVPASAPP-----PPATPLPSAEPGS---DDGPAPPPERQPPAPATEPAPDDPD 467
Query: 824 ---PKILD---NKEPPIIP 836
K LD + PP P
Sbjct: 468 DATRKALDALRERRPPEPP 486
Score = 43.4 bits (102), Expect = 0.001
Identities = 36/146 (24%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 742 ENSPSIPT---EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP--PKI--------- 787
P +P P P PP PS + P LP EP P++
Sbjct: 2486 ARFPFAAGAAPDPGGGGPPDPDAPP--APSRLA-PAILPDEPVGEPVHPRMLTWIRGLEE 2542
Query: 788 ----------PPSIPTEPPKIPPQRPPVP-PIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
PP P PP P + P P P P P P+V +R P P P
Sbjct: 2543 LASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRP-SEPAVTSRARRPDAPPQSARPRAP 2601
Query: 837 RDSSDLTYNTSTPSSRKASITNPEAP 862
D + PS P+ P
Sbjct: 2602 VDDRGDPRGPAPPSPLPPDTHAPDPP 2627
Score = 41.8 bits (98), Expect = 0.005
Identities = 44/190 (23%), Positives = 54/190 (28%), Gaps = 30/190 (15%)
Query: 648 PPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQH 707
PPPP P P + R A R P P P
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPP------------PRP-APRPSEPAVTSRARRPDAPPQSAR 2597
Query: 708 QNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPP 767
D+ P P + P+ + T D SPS P P PP+ P
Sbjct: 2598 PRAPVDDRGDPRGP---APPSPLPPDTHAP-DPPPPSPSPAANEPDPHPPPTVPPPERPR 2653
Query: 768 SVPSEPPKLPPSIPSEPPKIP-PSIPTEPPKIPPQRPPV------------PPIPEPKVA 814
P+ P + S P + P+ RP V PP PEP
Sbjct: 2654 DDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPH 2713
Query: 815 PSVPARPAPP 824
V A P PP
Sbjct: 2714 ALVSATPLPP 2723
Score = 39.2 bits (91), Expect = 0.026
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT-EPPKIPPQRPPVPPIP 809
P + + P +P S+PT P +P PP P P
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434
Query: 810 EPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKA 854
P P PAPP P +++ + ++RKA
Sbjct: 435 LPSAEPGSDDGPAPP------PERQPPAPATEPAPDDPDDATRKA 473
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 55.2 bits (133), Expect = 2e-07
Identities = 19/83 (22%), Positives = 26/83 (31%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
P+ P P P+ PK + P + + PP P + P P
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA 428
Query: 803 PPVPPIPEPKVAPSVPARPAPPK 825
P + P PAPPK
Sbjct: 429 PKLTRAAIPVDEKPKYTPPAPPK 451
Score = 53.3 bits (128), Expect = 9e-07
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
P P P+ + P P PS PK + P + + PP+P VA
Sbjct: 362 PVPAPQ---PAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418
Query: 815 PSVPARPAPPKILDNKEPPIIPRDSSD 841
P VP P L P+ +
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYT 445
Score = 52.1 bits (125), Expect = 2e-06
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P PT A P P PS PK + P + T PP P RP PP
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP--VPPRPVAPP 420
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPIIP 836
+P + R A P K P P
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAP 449
Score = 39.0 bits (91), Expect = 0.025
Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 773 PPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP---PIPEPKVAPSVPARPAPPKILDN 829
P P+ + P P P+ PK +P P+ E P VP RP P
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAAN-IPPKEPVRETATPPPVPPRPVAP----- 419
Query: 830 KEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKENVIDNDVLIQ 878
P +S+ + P K T P P++ K + D DVL Q
Sbjct: 420 --PVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQ 466
Score = 33.2 bits (76), Expect = 1.4
Identities = 19/91 (20%), Positives = 26/91 (28%)
Query: 1082 DAFLAMGPPPTPQCTPTPTPAKQRKTSADSDEDSDFNVFIRPQNFENNLQPNTALVPPSL 1141
+A L P P P P+ R T A S P VPP
Sbjct: 357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416
Query: 1142 APPPKSPAVPASQDSSPRFNPFDKGDVFAAP 1172
PP ++ + P D+ + P
Sbjct: 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPP 447
Score = 30.9 bits (70), Expect = 6.6
Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
N P P P PP P+ P + + E PK
Sbjct: 396 NIPPKEPVRETATPPPVPPRPVAPP--VPHTPESAPKLTRAAIPVD-----EKPKYT--- 445
Query: 803 PPVPPIPEPKVA 814
PP PP E K
Sbjct: 446 PPAPPKEEEKAL 457
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in
adaptor protein (AP) complex AP-3. AP complexes
participate in the formation of intracellular coated
transport vesicles and select cargo molecules for
incorporation into the coated vesicles in the late
secretory and endocytic pathways. There are four AP
complexes, AP-1, AP-2, AP-3, and AP-4, described in
various eukaryotic organisms. Each AP complex consists of
four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
family corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3 subunit, which includes two closely related homologs,
mu3A (P47A, encoded by ap3m1) and mu1B (P47B, encoded by
ap3m2). Mu3A is ubiquitously expressed, but mu3B is
specifically expressed in neurons and neuroendocrine
cells. AP-3 is particularly important for targeting
integral membrane proteins to lysosomes and
lysome-related organelles at trans-Golgi network (TGN)
and/or endosomes, such as the yeast vacuole, fly pigment
granules and mammalian melanosomes, platelet dense bodies
and the secretory lysosomes of cytotoxic T lymphocytes.
Unlike AP-1 and AP-2, which function in conjunction with
clathrin which is a scaffolding protein participating in
the formation of coated vesicles, the nature of the outer
shell of AP-3 containing coats remains to be elucidated.
Membrane-anchored cargo molecules interact with adaptors
through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-3 mu3 subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding.
Length = 248
Score = 53.4 bits (129), Expect = 3e-07
Identities = 61/274 (22%), Positives = 101/274 (36%), Gaps = 76/274 (27%)
Query: 1434 FLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIK 1493
LSGMPD+ L +N+ L+ FH CV+ +E R +
Sbjct: 47 RLSGMPDLTLSLNN---------PGL------------LDDPSFHPCVRLSRWESDRVLS 85
Query: 1494 FKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPC 1553
F PPD + LM +RV +LP+ +K ++ K R +I V R
Sbjct: 86 FIPPDGKF-TLMSYRVDLNSLVQLPVYVKP--QISLGKGGGRFEISV---GPRGNLGKTI 139
Query: 1554 EDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTS 1613
E+++V P+P+ VKS R T +
Sbjct: 140 ENVVVEIPLPKG---------------VKS-LRLT----------------------ASH 161
Query: 1614 GQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFT 1673
G ++ +++VW + +L T L ++L S ++ P + +I V F
Sbjct: 162 GTFSFDSSTKTLVWSIGKLTPG-----KTPTLRGSISLESGEEAPSEPPSI----SVSFK 212
Query: 1674 MPATQVSHTTVRSVSISNSDSDVPPEKYVRHLAR 1707
+P S V S+ I N P K V+++ +
Sbjct: 213 IPGYLPSGLKVDSLDIYN--EKYKPFKGVKYITK 244
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 52.5 bits (126), Expect = 2e-06
Identities = 34/161 (21%), Positives = 43/161 (26%), Gaps = 16/161 (9%)
Query: 721 PQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSI 780
Q VS+ + +VT + PT PP P T S P S
Sbjct: 41 GQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP 100
Query: 781 PSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAP-------------SVPARPAPPKIL 827
E PP + PP P P P P AP PA P
Sbjct: 101 AREGSPTPPGPSSPD---PPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGA 157
Query: 828 DNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKE 868
S S+P + ++P A S
Sbjct: 158 SPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP 198
Score = 49.4 bits (118), Expect = 2e-05
Identities = 40/236 (16%), Positives = 60/236 (25%), Gaps = 17/236 (7%)
Query: 634 DDLMDNKQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHL-DRCHAARTPSPTP 692
DL D + PRP P DL+ G + + S+ L A +
Sbjct: 5 PDLYDLIEAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDR 64
Query: 693 MRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPP 752
P P P + + TP + + P E SP+ P
Sbjct: 65 FEPPTGPPPGP--GTEAPANESRSTPTWSLSTLAPASPAR---------EGSPTPPGPSS 113
Query: 753 KLPPTIPAEPPKLPPSVPSE-PPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP---- 807
PP P PPS + L P PP
Sbjct: 114 PDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA 173
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
+P + A +PP PP + + S+ + +
Sbjct: 174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
Score = 40.2 bits (94), Expect = 0.013
Identities = 48/217 (22%), Positives = 64/217 (29%), Gaps = 30/217 (13%)
Query: 648 PPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQH 707
PP P P ++ +++ A AR SPTP P P+
Sbjct: 72 PPGPGTEAPANESRSTPTWSLSTLAPA--------SPAREGSPTP------PGPSSP--- 114
Query: 708 QNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPP 767
+ P P P+ ++ L P PP PA
Sbjct: 115 ------DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA-AGASPAAVAS--D 165
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKIL 827
+ S LP S P E + P S P EPP P P P S A P
Sbjct: 166 AASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG 225
Query: 828 DNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRK 864
+ SSD ++S+ SS E P
Sbjct: 226 RSAADD-AGASSSD---SSSSESSGCGWGPENECPLP 258
Score = 39.8 bits (93), Expect = 0.018
Identities = 27/151 (17%), Positives = 35/151 (23%), Gaps = 14/151 (9%)
Query: 683 HAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLE 742
P SP + + P S + + D
Sbjct: 773 ALLEPAEPQRGAGS-SPPVRAEAAFRRPGRLRRSGPA-ADAASRTASKRKSRSHTPDGGS 830
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPP---------SIPSEPPKIPPSIPT 793
S P PP P + S S+P P+ P
Sbjct: 831 ESSG-PARPP--GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAA 887
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P P P P P+ AP V P PP
Sbjct: 888 PPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918
Score = 37.1 bits (86), Expect = 0.12
Identities = 45/214 (21%), Positives = 61/214 (28%), Gaps = 30/214 (14%)
Query: 628 PDASSKDDLMDNKQDQTPRRP-PPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAAR 686
SS + P P P P+ P++ EA+ +
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRI-----------WEASGWNGPSSRPGP 284
Query: 687 TPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPS 746
S + R+ SPSP+P S P S + + S S
Sbjct: 285 ASSSSSPRE-RSPSPSPSSPGS------------GPAPSSPRASSSSSSSRESSSS-STS 330
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
+E + P P PS PS PP PP+ PS P K P P
Sbjct: 331 SSSESSRGAAVSPGPSPSRSPS-PSRPP--PPADPSSPRKRPRPSRAPSSPAASAGRPTR 387
Query: 807 PIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSS 840
VA R A + P P D+
Sbjct: 388 RRARAAVAGRARRRDATGR-FPAGRPRPSPLDAG 420
Score = 36.7 bits (85), Expect = 0.14
Identities = 32/234 (13%), Positives = 42/234 (17%), Gaps = 23/234 (9%)
Query: 640 KQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSP 699
P PPR P S + AA + S
Sbjct: 196 STPPAAASPRPPRRSSPIS----------ASASSPAPAPGR--SAADDAGASSSDSSSSE 243
Query: 700 SPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIP 759
S +N PI T + + +S S P P+ P
Sbjct: 244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303
Query: 760 AEPPKLPPSVPSEPPKLPPS-----------IPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
P S P P+ P PP P
Sbjct: 304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363
Query: 809 PEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
K A +P + A P
Sbjct: 364 SPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPL 417
Score = 35.5 bits (82), Expect = 0.36
Identities = 25/158 (15%), Positives = 36/158 (22%), Gaps = 11/158 (6%)
Query: 711 MGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVP 770
DIT S + L++ E + PP P +L S P
Sbjct: 748 ASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGP 807
Query: 771 SEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNK 830
+ + P P A PAR + +K
Sbjct: 808 AA--------DAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESS--KSK 857
Query: 831 EPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKE 868
R P +A AP K +
Sbjct: 858 PAAAGGRARGKNGRRRPRPPEPRA-RPGAAAPPKAAAA 894
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 51.5 bits (124), Expect = 3e-06
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKL--PPSIPSEPPKIPPSIPTEPPKIPPQ 801
S S PP + PP P +P PP+ P PP + P +IP
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 802 RPPVPPIPEPKVAPSVPARPAPPKILDNK 830
P PPIPE P + + P+ +D
Sbjct: 574 SSPPPPIPEEPTPS--PTKDSSPEEIDKA 600
Score = 49.6 bits (119), Expect = 1e-05
Identities = 44/253 (17%), Positives = 72/253 (28%), Gaps = 34/253 (13%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
+P+ A P PS PP + + + P K P P
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419
Query: 807 PIPEPKVAPSVPARPAPP---------KILDNKEPP-----------IIPRDSSDLTYNT 846
EP P A APP +IL E P ++ DS+
Sbjct: 420 EPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAV 479
Query: 847 STP-----SSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQ 901
S SRK + A K ++ N L + ++ +++ +KS
Sbjct: 480 SPNWLGMVQSRKPLLEQ--AFAKVLGRSIKLN--LESQSGSASNTAKTPPPPQKSPPPPA 535
Query: 902 RITSASQSRKASNEVAPDVFSQQITST-----NIIENYTTDSSPFIEDHATAVNHEATAE 956
Q + P T I ++ P E+ + +++ E
Sbjct: 536 PTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPE 595
Query: 957 PIQHTADQFMNLF 969
I A + F
Sbjct: 596 EIDKAAKNLADFF 608
Score = 45.0 bits (107), Expect = 3e-04
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 722 QTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKL--PPSVPSEPPKLPPS 779
Q+ S N K+ P + PP P +P PP+ P PP +
Sbjct: 513 QSGSASNTAKT----------PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA 562
Query: 780 IPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
+ P +IP PP P P
Sbjct: 563 SSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
Score = 38.8 bits (91), Expect = 0.032
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 721 PQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSI 780
P S N SP P P T A PP + PP +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPI---PV 417
Query: 781 PSEPPKIPPSIPTEPPKIPPQ 801
P+EP + P+ P PP
Sbjct: 418 PAEPTEPSPTPPANAANAPPS 438
Score = 32.6 bits (75), Expect = 2.1
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 718 PIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPK---LPPSVPSEPP 774
+ + K T P+ PP P VP+EP
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422
Query: 775 KLPPSIPSEPPKIPPS 790
+ P+ P+ PPS
Sbjct: 423 EPSPTPPANAANAPPS 438
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 50.1 bits (120), Expect = 5e-06
Identities = 28/103 (27%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
D SPS P P+ P+ P S P P S S+ P P PT P
Sbjct: 178 DPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSD 841
P P PP + S +P PP P D
Sbjct: 238 PGPAAPPPPPVQQVPPLSTA-KPTPPSASATPAPIGGITLDDD 279
Score = 46.6 bits (111), Expect = 7e-05
Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P +P P+ P PS PS P S P P S ++ P P+ P
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPT 232
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSS 840
P P AP P P + P P S+
Sbjct: 233 NPSPPPGPAAPPPP--PVQQVPPLSTAKPTPPSASA 266
Score = 45.4 bits (108), Expect = 2e-04
Identities = 24/123 (19%), Positives = 29/123 (23%), Gaps = 3/123 (2%)
Query: 742 ENSPSIPTEPPKLPPTIPAEP---PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
P + E P S P PPS P P
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITN 858
PP P + P P P P P P +T+ P+ AS T
Sbjct: 209 DSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268
Query: 859 PEA 861
Sbjct: 269 API 271
Score = 45.1 bits (107), Expect = 2e-04
Identities = 25/140 (17%), Positives = 36/140 (25%), Gaps = 17/140 (12%)
Query: 686 RTPSPTPMRD----------IHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTR 735
P+P P D +S + P D S P +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGED-----ADPASASPSDPPSSSPGVPSFPSP 200
Query: 736 NLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
+ S+P P P P+ P + P P P P + P + T
Sbjct: 201 PEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPP--PVQQVPPLSTAK 258
Query: 796 PKIPPQRPPVPPIPEPKVAP 815
P P PI +
Sbjct: 259 PTPPSASATPAPIGGITLDD 278
Score = 44.7 bits (106), Expect = 3e-04
Identities = 30/133 (22%), Positives = 42/133 (31%), Gaps = 7/133 (5%)
Query: 694 RDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPK 753
D + P + + + FP ++P D +SP +P+ P
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASP-----SDPPSSSPGVPSFPSP 200
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP-PVPPIPEPK 812
LPP+ S PP P P P P PP + P +P
Sbjct: 201 PEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKP- 259
Query: 813 VAPSVPARPAPPK 825
PS A PAP
Sbjct: 260 TPPSASATPAPIG 272
Score = 36.2 bits (84), Expect = 0.12
Identities = 24/112 (21%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
P + S P E + P++PP P P P PE +
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206
Query: 815 PSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYS 866
PS + P P + PP P + N S P A P
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPT----NPSPPPGPAAPPPPPVQQVPPL 254
Score = 35.0 bits (81), Expect = 0.31
Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 1/136 (0%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
N E + P ++P PS P PS P+ P
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P P P S P+P + PP S+ K + + A
Sbjct: 209 DSSLP-PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 863 RKYSKENVIDNDVLIQ 878
+D+D + +
Sbjct: 268 PAPIGGITLDDDAIAK 283
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 49.9 bits (119), Expect = 5e-06
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P PP P T A P P P P P P +P PP P +P PP PPV P
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP--PPVDP 98
Query: 808 IPEPKVAP 815
P AP
Sbjct: 99 NAPPPPAP 106
Score = 48.4 bits (115), Expect = 2e-05
Identities = 23/65 (35%), Positives = 26/65 (40%)
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKE 831
PP PPS + P P PP PP P P P P+ P P PP + N
Sbjct: 42 APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAP 101
Query: 832 PPIIP 836
PP P
Sbjct: 102 PPPAP 106
Score = 46.0 bits (109), Expect = 8e-05
Identities = 21/66 (31%), Positives = 24/66 (36%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
PP PP+ A P P PP PP+ + P P P P PP P P P
Sbjct: 42 APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAP 101
Query: 810 EPKVAP 815
P
Sbjct: 102 PPPAPE 107
Score = 45.3 bits (107), Expect = 2e-04
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P+ P PP PA PP P+ PP P P+ P PP+ P PP PP P
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP-PPVDPN 99
Query: 805 VPPIPEP 811
PP P P
Sbjct: 100 APPPPAP 106
Score = 44.9 bits (106), Expect = 2e-04
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
D P P+ P PP P + P+ P P + P PP P + P PP +
Sbjct: 40 DPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPP--PPPVD 97
Query: 800 PQRPPVPPIPEP 811
P PP PP PEP
Sbjct: 98 PNAPP-PPAPEP 108
Score = 42.2 bits (99), Expect = 0.001
Identities = 20/56 (35%), Positives = 20/56 (35%)
Query: 783 EPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRD 838
PP PPS P PP PP P P P PP D PP P D
Sbjct: 42 APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVD 97
Score = 36.4 bits (84), Expect = 0.11
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
+P P P P P +P PP P++P PP P P PP EP +I
Sbjct: 58 AAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP--PPVDPNAPPPPAPEPGRID 112
Score = 31.8 bits (72), Expect = 3.1
Identities = 17/54 (31%), Positives = 18/54 (33%)
Query: 785 PKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRD 838
P + P PP P P P P A PAP N PP P D
Sbjct: 34 PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD 87
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 48.8 bits (117), Expect = 6e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ ++PT+PP+ PS+ +P + P P+ P + P P EPPK P
Sbjct: 60 TQALPTQPPEGAAEAVRAGDAAAPSL--DPATVAP--PNTPVEPEP-APVEPPKPKPVEK 114
Query: 804 PVP-PIPEPKVAPSVPARPAPPKILDNKEPP 833
P P P P+ KV +P P +++ K P
Sbjct: 115 PKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
++ + +P + P P+ P P +P P E PK P + P +
Sbjct: 79 DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPK------PVEKPKPKPKPQQKVEAPPAPK 132
Query: 803 PPVPPIPEPKVAP 815
P P+ E K AP
Sbjct: 133 PEPKPVVEEKAAP 145
Score = 36.5 bits (85), Expect = 0.065
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 750 EPPKLPPTIPAEPPKLPPS----VPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP-P 804
EP +P A P + P V + P P+ + EP + P +P P
Sbjct: 52 EPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKP 111
Query: 805 VP-PIPEPKVAPSVPARPAPP 824
V P P+PK V A PAP
Sbjct: 112 VEKPKPKPKPQQKVEAPPAPK 132
Score = 34.6 bits (80), Expect = 0.36
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 774 PKLPPSIPSEPPK---------IPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P ++P++PP+ + +P + P P P PEP +P
Sbjct: 57 PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAP--PNTPVEPEPAPVEPPKPKPVEK 114
Query: 825 KILDNKEPPIIP 836
K +
Sbjct: 115 PKPKPKPQQKVE 126
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 50.5 bits (121), Expect = 8e-06
Identities = 26/120 (21%), Positives = 32/120 (26%), Gaps = 9/120 (7%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P P P P+ P S P+ PP P P P
Sbjct: 377 EKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP------A 430
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P P AP+ A P E IP + + S+ A P A R
Sbjct: 431 AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP---EPAVASAAPAPAAAPAAAR 487
Score = 42.4 bits (100), Expect = 0.002
Identities = 15/82 (18%), Positives = 23/82 (28%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
+ P P + + + + P P+ P PP P P+ P A
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432
Query: 815 PSVPARPAPPKILDNKEPPIIP 836
A A P + P
Sbjct: 433 APAAAPAAAPAAVALAPAPPAQ 454
Score = 42.4 bits (100), Expect = 0.002
Identities = 15/80 (18%), Positives = 20/80 (25%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ + P PP A P P+ ++ PP P P
Sbjct: 411 ASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470
Query: 804 PVPPIPEPKVAPSVPARPAP 823
V A AR P
Sbjct: 471 AVASAAPAPAAAPAAARLTP 490
Score = 40.9 bits (96), Expect = 0.007
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPK---IPPQRPPVPP 807
P A P + + P P + P+ P P+ IP + P P
Sbjct: 412 SAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471
Query: 808 IPEPKVAPSVPARPAPPKILDNKE 831
+ AP A PA ++ +E
Sbjct: 472 VASAAPAP--AAAPAAARLTPTEE 493
Score = 37.8 bits (88), Expect = 0.055
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSE---PPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
+P P + A P P + P+ P P E IP + EP
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 801 QRPPVPPIPEPKVAPS 816
P ++ P+
Sbjct: 476 APAPAAAPAAARLTPT 491
Score = 37.4 bits (87), Expect = 0.077
Identities = 19/114 (16%), Positives = 24/114 (21%), Gaps = 2/114 (1%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP--IPEPK 812
P P+ P P+ P P P PP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425
Query: 813 VAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYS 866
VA A PA + P + T R A +
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 49.4 bits (118), Expect = 2e-05
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEP-PKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
+ P AE LP + S P++PP +P P + + E P P P
Sbjct: 51 AEQMA-APEA--AEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAP 107
Query: 807 PIPEPKVAPSVPARPAPPKI 826
EP V PS+ A P I
Sbjct: 108 APAEP-VEPSLAANPFAAAI 126
Score = 39.0 bits (91), Expect = 0.024
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 694 RDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPK 753
R++ S ++ P + P + S + P PP
Sbjct: 33 RELRSLVAEGAAGPVAKAAEQMAAP--EAAEAAP----------LPAAAESIASPEVPPP 80
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT 793
+PP P + + +E P P+ + P P P+
Sbjct: 81 VPP----APAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPS 116
Score = 38.7 bits (90), Expect = 0.033
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKL--PPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
E L A P + P P + P +P P P Q P
Sbjct: 33 RELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAP 92
Query: 807 PIPEPKVAPSVPARPAPPKILDNKEP 832
+P +VPA A P + EP
Sbjct: 93 AAEQPS---AVPAPSAAPAPAEPVEP 115
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 47.5 bits (113), Expect = 2e-05
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPE 810
P+ P P P P EP P +P K P +P P +P V P P+
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Query: 811 PKVAPS--VPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
PK PS PA P ++ + R+A P P
Sbjct: 117 PKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPA 171
Score = 44.8 bits (106), Expect = 2e-04
Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP-P 807
P E P+ P P E PK P + P PP +P + P P P
Sbjct: 42 FLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRK 864
P+PK P V +P PK +K P + S S+ A+ +
Sbjct: 102 KPKPKPKPKVKPQPK-PKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLS 157
Score = 32.1 bits (73), Expect = 2.3
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 747 IPTEPPKLPPTIPAEPPKLP--PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
+ I P + + E P P EPP+ P PP
Sbjct: 23 FVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQP--KPPTEPE---TPP 77
Query: 805 VPPIPEPKVAPSVPARPAPPK 825
P P+PK P +P PK
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPK 98
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 48.9 bits (116), Expect = 3e-05
Identities = 55/238 (23%), Positives = 73/238 (30%), Gaps = 21/238 (8%)
Query: 648 PPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQH 707
P P P + SH +A P P R+ P P P + H
Sbjct: 288 HPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPP-REQPLP-PAPSMPH 345
Query: 708 QNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPP 767
I + Q+ P H++ + PS PP L P + + P PP
Sbjct: 346 IKPPPTTPIPQLPNQSHKHPPHLQGPS-----PFPQMPSNLPPPPALKP-LSSLPTHHPP 399
Query: 768 SVPSEPPKLPP------SIPSEPPKI------PPSIPTEPPKIPPQRPPVPPIPEPKVAP 815
S P +L P S+P++PP + PP T P PP P +
Sbjct: 400 SAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTS 459
Query: 816 SVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEA-PRKYSKENVID 872
PP L P PR SS S S P KE +D
Sbjct: 460 GGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLD 517
Score = 41.2 bits (96), Expect = 0.005
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 717 TPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKL 776
+P P + S + + + PSI P P +VP + +
Sbjct: 151 SPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPI 210
Query: 777 PPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP-------EPKVAPSVPARPAPPKILDN 829
+P + P P + PQR P P P + P P+ P
Sbjct: 211 AAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHG 270
Query: 830 KEPPI 834
PP+
Sbjct: 271 PGPPM 275
Score = 37.4 bits (86), Expect = 0.090
Identities = 36/150 (24%), Positives = 49/150 (32%), Gaps = 15/150 (10%)
Query: 687 TPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPS 746
PS P R PSP P +Q Q P + +H +
Sbjct: 229 APSLHPQR---LPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPH-------A 278
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
+ P L P + PP PS PPS P+ PP+ P+P
Sbjct: 279 LQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLP 338
Query: 807 P---IPEPKVAPSVPARPAPPKILDNKEPP 833
P +P K P+ P P + +K PP
Sbjct: 339 PAPSMPHIKPPPTTPIPQLPNQ--SHKHPP 366
Score = 35.8 bits (82), Expect = 0.24
Identities = 49/231 (21%), Positives = 63/231 (27%), Gaps = 40/231 (17%)
Query: 643 QTPRRPP-PPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSP 701
Q PR P PP P +P K T SH H P+P + S P
Sbjct: 330 QPPREQPLPPAPSMPHIKPPP----TTPIPQLPNQSHK---HPPHLQGPSPFPQMPSNLP 382
Query: 702 TPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPP------KLP 755
P + P+ P LM + S+P +PP LP
Sbjct: 383 PPPA----------LKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLP 432
Query: 756 PTIPAEPPKLPPSVPSEPP---------------KLPPSIPSEPPKIPPSIPTEPPKIPP 800
P P S P + P P S P P + P
Sbjct: 433 PKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSA 492
Query: 801 QRPPVPPIPEPKVAPSVPARPAPPKILDNKE-PPIIPRDSSDLTYNTSTPS 850
P + + P + E PP PR S +TPS
Sbjct: 493 LPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPS 543
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 48.4 bits (115), Expect = 3e-05
Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 34/231 (14%)
Query: 669 TGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPN 728
T HM + C P P P PTP+ + DE P F + + P+
Sbjct: 270 TTHMV-EECEEEECPVEPEPLPVP----APVPPTPEDDNPRPTDDEFAVPNFNEGLDVPD 324
Query: 729 HVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP 788
+ + + + +P+ P +P E P P P S S + P
Sbjct: 325 NPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDESNVPP--NPPNVPGGSNSEFSSDVENP 382
Query: 789 PSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTST 848
P+ P P IP Q P +P +V VP P + + EP
Sbjct: 383 PNPPN--PDIPEQEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEP--------------KK 426
Query: 849 PSSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQD 899
P ++ P P +DN+ N K+ Q +R +S+D
Sbjct: 427 PENKGDGQNEPVIP------KPLDNERDQSN-----KNKQVNPGNRHNSED 466
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 46.8 bits (111), Expect = 1e-04
Identities = 20/104 (19%), Positives = 28/104 (26%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
+ P PA PP PP+ P++P P E P P
Sbjct: 475 AAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTST 848
AP+ P + P PR S+ +
Sbjct: 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
Score = 39.9 bits (93), Expect = 0.012
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 20/108 (18%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVP---SEPPKLPPSIPSEPP------------KIPP 789
P+ P PP PA P + + P + P+ + P
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
Query: 790 SIPTEPPKIPPQRPPV-PPIPEPKVAPSVPARPAP---PKILDNKEPP 833
P P RP P P A + PAR AP P D+ PP
Sbjct: 452 PAPAAAP-AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498
Score = 38.3 bits (89), Expect = 0.046
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 5/116 (4%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP---QRPPVP 806
P P PA P+ P + + P + P PP + PP
Sbjct: 449 APAPAPAAAPA--AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506
Query: 807 PIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P P + PA I D + + P+ R A+ T P
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562
Score = 37.9 bits (88), Expect = 0.058
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 12/85 (14%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTE---PPKIPP------- 800
P P P+ + P PP+ P+ P + P + P
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
Query: 801 --QRPPVPPIPEPKVAPSVPARPAP 823
Q P P AP+ A PA
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAA 460
Score = 36.4 bits (84), Expect = 0.17
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIP---SEPPKIPPSIPTEPPKIPPQ 801
P P P A P PP+ P+ P + + P + P+
Sbjct: 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS 440
Query: 802 RPPVPPIPEPKVAP-SVPARPAPPKILDNKEPP 833
P P AP + PA A P +
Sbjct: 441 ARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVA 473
Score = 36.0 bits (83), Expect = 0.21
Identities = 30/190 (15%), Positives = 44/190 (23%), Gaps = 26/190 (13%)
Query: 644 TPRRPPPPRPVIPPSKETKDLILTVTGHME--------ATSSHLDRCHAARTPSPTPMRD 695
P PP P + + A + A P+P P
Sbjct: 398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA-- 455
Query: 696 IHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPP--K 753
+P + P + +P+ PP +
Sbjct: 456 ---AAPAAAAR-----------PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKV 813
LPP + P P + P+ P+ P P EP V
Sbjct: 502 LPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
Query: 814 APSVPARPAP 823
AP P A
Sbjct: 562 APRPPRASAS 571
Score = 34.5 bits (79), Expect = 0.55
Identities = 21/111 (18%), Positives = 27/111 (24%), Gaps = 6/111 (5%)
Query: 756 PTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP-PQRPPVPPIPEPKVA 814
P P P + P P P P P PP E
Sbjct: 448 PAPAPAPAAAP--AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505
Query: 815 PSVPARPAPPKILDNKEPPIIPRDSS---DLTYNTSTPSSRKASITNPEAP 862
+ PA P IP ++ D + T P+ A A
Sbjct: 506 FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556
Score = 33.3 bits (76), Expect = 1.3
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 766 PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P+ + P P+ + P P PP P P A PAP
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 826 ILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
+ ++ R P++ A+ P A
Sbjct: 433 LAAARQAS--ARGPGGAPAPAPAPAAAPAAAARPAAA 467
Score = 31.4 bits (71), Expect = 5.6
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
P A P P+ + P P+ PP P + P P P
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA-AAPARRSPAPE 431
Query: 815 PSVPARPAPP 824
AR A
Sbjct: 432 ALAAARQASA 441
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 46.8 bits (112), Expect = 1e-04
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 719 IFPQTVSEPNHVKSVTRNLMDDLE----NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPP 774
++ Q +++PN V R D +P+ + PA P P
Sbjct: 14 MYQQYLADPNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA 73
Query: 775 KLPPSIPSEPPK--IPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKE 831
+ P+ PPK + P P P P R A + N +
Sbjct: 74 PPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAKNMD 132
Score = 42.6 bits (101), Expect = 0.002
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 762 PPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
P+ + S P+ P P P PP P A + A
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA-AAPA 97
Query: 822 APPKILDNKEPP 833
APP P
Sbjct: 98 APPAAAAAAAPA 109
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 45.8 bits (109), Expect = 1e-04
Identities = 27/143 (18%), Positives = 35/143 (24%), Gaps = 23/143 (16%)
Query: 686 RTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSP 745
+ P + P QHQ P + + P
Sbjct: 69 HRVNHAPANAQEHEAARPSPQHQYQ-------PPYASAQPRQPVQQP------------P 109
Query: 746 SIPTEPPKLP-PTIPAEPPKLPP--SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
P P P PA P P E P P P P P + + P
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPA-PQPVHSAPQPAQQAF 168
Query: 803 PPVPPIPEPKVAPSVPARPAPPK 825
P P+ P+ P P K
Sbjct: 169 QPAEPVAAPQPEPVAEPAPVMDK 191
Score = 43.1 bits (102), Expect = 0.001
Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEP---PKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
P + P+ P P E P P P+ +P P P++ P
Sbjct: 94 PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPA 153
Query: 802 RPPVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
PV P+P PA P + P
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185
Score = 38.9 bits (91), Expect = 0.022
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP----------PSIPT 793
+ + E + P +PP + P +P + PP P P
Sbjct: 76 ANAQEHEAARPSPQHQYQPP-YASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAY 134
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEP 832
+P P + PV P P P A + EP
Sbjct: 135 QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEP 173
Score = 36.6 bits (85), Expect = 0.11
Identities = 18/95 (18%), Positives = 30/95 (31%)
Query: 730 VKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPP 789
V V + E+ + P+ + P + P+ P P E P P P
Sbjct: 68 VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127
Query: 790 SIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
+ + P++P P+ P AP
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 45.7 bits (108), Expect = 2e-04
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 737 LMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPP 796
L++ + N + P P P P P P P P PS + P
Sbjct: 370 LIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAP- 428
Query: 797 KIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P Q+PPV +P A
Sbjct: 429 -TPEQQPPVARSAPLPPSPQASAPRNVAS 456
Score = 38.4 bits (89), Expect = 0.033
Identities = 14/64 (21%), Positives = 19/64 (29%)
Query: 777 PPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
P P K P +P + P P P P PS + P P + +P
Sbjct: 384 PAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLP 443
Query: 837 RDSS 840
Sbjct: 444 PSPQ 447
Score = 32.2 bits (73), Expect = 3.1
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 679 LDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLM 738
L R PSP D+ +P PD+ PQ P K
Sbjct: 373 LVRNDGGVAPSPAGSPDVKKKAPEPDL---------------PQPDRHPGPAKPEAPGAR 417
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPK 775
SP+ P + PP A LPPS + P+
Sbjct: 418 PAELPSPASAPTPEQQPPV--ARSAPLPPSPQASAPR 452
Score = 31.8 bits (72), Expect = 4.1
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 1089 PPPTPQCTPTPTPAKQRKTSADSDEDSDFNVFIRPQNFENNLQPNTALVPPSLAPPPKSP 1148
P PQ P PAK A E P +A P P +S
Sbjct: 396 EPDLPQPDRHPGPAKPEAPGARPAELP---------------SPASAPTPEQQPPVARSA 440
Query: 1149 AVPASQDSSPRFN 1161
+P S +S N
Sbjct: 441 PLPPSPQASAPRN 453
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 44.0 bits (104), Expect = 3e-04
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 4/92 (4%)
Query: 752 PKLPPTIPAEPPKLPPSVPS--EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
L PA + +P P P P E P P P+
Sbjct: 108 KVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVD 167
Query: 810 EPKVAPSVPARP--APPKILDNKEPPIIPRDS 839
+A P PP++P+ S
Sbjct: 168 SMAIAVPAIDTPVTLELPPAPQPPPPVVPQPS 199
Score = 43.3 bits (102), Expect = 5e-04
Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P+ E P +P P P P E P P E P +
Sbjct: 115 PAPQEETVADPIQA-LQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP-VDSMAIA 172
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDS 839
VP I P PA PP ++ ++ R S
Sbjct: 173 VPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207
Score = 42.5 bits (100), Expect = 0.001
Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 726 EPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPP 785
+ + D + P +PA P PP E P P E P
Sbjct: 110 LGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPE--PP--SYEETIKPGPAPVEEP 165
Query: 786 KIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
+ P P +PP P+P P VP
Sbjct: 166 -VDSMAIAVPAIDTPVTLELPPAPQP-PPPVVPQPSTMV 202
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 45.0 bits (107), Expect = 3e-04
Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 713 DEDITPIFPQTVS-------EPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKL 765
D D+ + P + P + E K T E
Sbjct: 45 DSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL-TAQREQLVA 103
Query: 766 PPSVPSEPPKLPPSIPSEPPKI-PPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPAR 820
+ P+ P P+ P+E + RP VP VA +V AR
Sbjct: 104 RAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159
Score = 36.9 bits (86), Expect = 0.11
Identities = 19/109 (17%), Positives = 25/109 (22%), Gaps = 7/109 (6%)
Query: 736 NLMDDLENSPSIPTEPPKLPPTI---PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIP 792
L +P+ PP P PA P P E K E +
Sbjct: 50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLT-AQREQL---VARA 105
Query: 793 TEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSD 841
P Q P P + A + P +D
Sbjct: 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVAD 154
Score = 35.3 bits (82), Expect = 0.31
Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 8/115 (6%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+P P P S P+ P P E K + E R
Sbjct: 52 APPAAAAPA--AAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAK-RLTAQREQL---VARA 105
Query: 804 PVPPIPEPK--VAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASI 856
P PE + AP+ A + PR + + KA I
Sbjct: 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 43.5 bits (103), Expect = 5e-04
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 751 PPKLPPTIPAEPPKLPPSVP-SEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
P L P +PP P P EP +P P IP P PK P+ PV +
Sbjct: 55 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114
Query: 810 EPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSK 867
E P P P +N P + T +T+T ++ K + PR S+
Sbjct: 115 EQPKREVKPVEPRPASPFENTAP-------ARPTSSTATAAASKPVTSVSSGPRALSR 165
Score = 33.9 bits (78), Expect = 0.53
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI-----PTEPPKIPPQR 802
P + + PP EP P +P P + P IP PK P P + + P+R
Sbjct: 60 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Query: 803 PPVPPIPEPK--VAPSVPARPAPPKILDNKEPPIIPRDS 839
P P P + PARP P+ S
Sbjct: 120 EVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSS 158
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 44.2 bits (104), Expect = 5e-04
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 756 PTIPAEPPKLPPS---VPSEPPKLPPSIPSEPPKI--PPSIPTEPPKIPPQRP-PVPPIP 809
P +P P+L P+ VP+ P P + P+ PS T PP P P
Sbjct: 188 PALPLSAPRLGPADVFVPATPR--PTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAP 245
Query: 810 EPKVAPSVPARPAPPKILDNKEPP 833
+ P PAPP + PP
Sbjct: 246 QAGTTPEAEGTPAPPTPGGGEAPP 269
Score = 36.1 bits (83), Expect = 0.17
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P+ P P P P PS + PP +IP+ I P+ + P
Sbjct: 205 PATPR-PTPRTTASPETTP--TPSTTTSPP--STTIPAPSTTIAAPQAGTTPE--AEGTP 257
Query: 805 VPPIPEPKVAPSVPARPAP 823
PP P AP A PAP
Sbjct: 258 APPTPGGGEAPPANATPAP 276
Score = 31.8 bits (72), Expect = 3.2
Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 758 IPAEPPKLPPSVPSEPPKLP--PSIPSEPPKIPPS---IPTEPPKIPPQRPPVPPIPEPK 812
PAE P + P++P P++ P+ +P P P R PE
Sbjct: 166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPR--PTPRTTAS--PETT 221
Query: 813 VAPSVPARPAPPKILDNKEPPIIPRDSSDL----TYNTSTPSSRKASITN----PEAPR 863
PS P I P+ + T TP +A N PEA R
Sbjct: 222 PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASR 280
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 41.7 bits (98), Expect = 5e-04
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P PP P P PP P+ P P S P+ PP ++P PP PP PP
Sbjct: 81 PLTPP--APPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
Score = 41.4 bits (97), Expect = 7e-04
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
P P PP PA P P S P+ PP ++P+ PPS P +PP+ P
Sbjct: 87 PPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 35.6 bits (82), Expect = 0.072
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 765 LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP--PIPEPKVAPSVPARPA 822
L P P PP+ ++ P P++PT PP P PP P +P P AP P
Sbjct: 79 LAPLTPPAPPEPVTPPTAQSP--APAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQ 136
Query: 823 PPK 825
PP+
Sbjct: 137 PPR 139
Score = 35.2 bits (81), Expect = 0.085
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+P P PP+ A+ P P+VP+ PP P++P P P+ PP P +P
Sbjct: 80 APLTPPAPPEPVTPPTAQSP--APAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQP 137
Query: 804 PVPP 807
P P
Sbjct: 138 PRAP 141
Score = 35.2 bits (81), Expect = 0.10
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 776 LPPSIPSEPPK--IPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
L P P PP+ PP+ + P +P P P P A +VPA A P D +PP
Sbjct: 79 LAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
Query: 834 IIP 836
P
Sbjct: 139 RAP 141
Score = 34.0 bits (78), Expect = 0.20
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP 788
P P P + PA PP +VP+ PPS P +PP+ P
Sbjct: 96 AQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 34.0 bits (78), Expect = 0.21
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 754 LPPTIPAEPPK--LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
L P P PP+ PP+ S P +P P+ P +PP+ P P PP P+P
Sbjct: 79 LAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPA-PAAAVPAPAAAPPPSDPPQP 137
Query: 812 KVAP 815
AP
Sbjct: 138 PRAP 141
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 44.1 bits (104), Expect = 7e-04
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIP--SEPPKIPPSIPTEPPKIPP 800
N P PP P ++P PP PS +P S P +P P +P PP
Sbjct: 181 NIPGAIQPPP--PSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSA-PP 237
Query: 801 QRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
P PPIP V V P PP PIIP
Sbjct: 238 ASIPAPPIP--PVIQYVAPPPVPPP------QPIIP 265
Score = 43.4 bits (102), Expect = 0.001
Identities = 31/106 (29%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 754 LPPTIPAEPPKLPPSVPSEPP----KLPPSIPSEP----------PKIPPSIPTEPPKIP 799
IP PPS P L PS S P P +P P +P P
Sbjct: 178 RGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSA-P 236
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNK-------EPPIIPRD 838
P P PPIP + P P P I+ + E P PRD
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPPQPIIPIQHIRAVTGETPANPRD 282
Score = 35.7 bits (82), Expect = 0.26
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 719 IFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPP 778
I P S + + +L ++P P +P P P + P+ P PP
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIP-APP 244
Query: 779 SIPSEPPKIPPSIPTEPPKIPPQ 801
P PP +P P IP Q
Sbjct: 245 IPPVIQYVAPPPVPPPQPIIPIQ 267
Score = 32.6 bits (74), Expect = 2.0
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 696 IHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLP 755
I P P+ + + P S P + SP+ P+ PP
Sbjct: 186 IQPPPPSSLPGLP-----PGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASI 240
Query: 756 PTIPAEPPKLPPSVPSEPPKLPP-------SIPSEPPKIPPSIP 792
P P P + P PP P ++ E P P IP
Sbjct: 241 PAPPIPPVIQYVAPPPVPPPQPIIPIQHIRAVTGETPANPRDIP 284
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 43.5 bits (102), Expect = 0.001
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L P P +P P P EP K ++ P P S PK+P + P
Sbjct: 575 LSKKPEFPKDPKH--PKDPEEPKKPKRPRSAQRPTRPKS-----PKLPELLDIPKSPKRP 627
Query: 801 QRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPR 837
+ P P P P PS P RP PKI+ + +PP P+
Sbjct: 628 ESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPK 664
Score = 38.1 bits (88), Expect = 0.052
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKL----------------PPSIPSEPPKIP 788
P PPK P E + S S+ PK P+ +P KIP
Sbjct: 514 PEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIP 573
Query: 789 -----PSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLT 843
P P +P P+ P P P+ + P RP PK+ + + P P+
Sbjct: 574 TLSKKPEFPKDPKH--PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPK 631
Query: 844 YNTSTPS-SRKASITNPEAPR 863
P R +S PE P+
Sbjct: 632 SPKRPPPPQRPSSPERPEGPK 652
Score = 36.6 bits (84), Expect = 0.13
Identities = 32/92 (34%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPS--IPSEP--------PKIPPSIPT 793
P P EP K A+ P P S PKLP IP P PK PP P
Sbjct: 587 HPKDPEEPKKPKRPRSAQRPTRPKS-----PKLPELLDIPKSPKRPESPKSPKRPPP-PQ 640
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P P+RP P I + P P P PK
Sbjct: 641 RP--SSPERPEGPKIIKSPKPPKSPKPPFDPK 670
Score = 31.2 bits (70), Expect = 6.9
Identities = 39/208 (18%), Positives = 59/208 (28%), Gaps = 58/208 (27%)
Query: 717 TPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEP--PKLP--PTIPAEP--PKLPPSVP 770
P P++ P KS + D+ SP P P PK P P P+ P P+ P +
Sbjct: 596 KPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIK 655
Query: 771 SEPPKLPPSIPSEP--------------------------------------PKIPPSIP 792
S P P P +P P+ P +
Sbjct: 656 SPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPF 715
Query: 793 TEPPKIPPQRPPVP-----PIPEPKVAPSVPARPAPPKILDN---KEPPIIPRDSSDLTY 844
T P +PP+ P PI +P P + E P L
Sbjct: 716 TTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAE 775
Query: 845 NTSTP------SSRKASITNPEAPRKYS 866
++ P++P ++
Sbjct: 776 EFKEEDIHAETGEPDEAMKRPDSPSEHE 803
Score = 30.8 bits (69), Expect = 9.3
Identities = 49/209 (23%), Positives = 67/209 (32%), Gaps = 55/209 (26%)
Query: 643 QTPRRPPPP-RPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSP 701
++P+RPPPP RP P E +I ++P P SP P
Sbjct: 631 KSPKRPPPPQRPSSPERPEGPKII--------------------KSPKPPK-----SPKP 665
Query: 702 TPDVQHQNLMGDE--DITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTE-----PPKL 754
D + + D+ D +T + +S L + L +P P PPKL
Sbjct: 666 PFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKL 725
Query: 755 P--PTIPAEPPKLPPS---VPSEPPKLP----------------PSIPSEPPKIPP-SIP 792
P P EP P + E P P I +E K
Sbjct: 726 PRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAE 785
Query: 793 TEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
T P +RP P E K P+ P
Sbjct: 786 TGEPDEAMKRPDSPSEHEDKPPGDHPSLP 814
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 43.2 bits (102), Expect = 0.001
Identities = 43/217 (19%), Positives = 72/217 (33%), Gaps = 16/217 (7%)
Query: 625 RHYPDASSKDDLMDNKQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHA 684
+ PD L P+ P P P + ++ +E + L +
Sbjct: 114 EYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKML-----SLEEVEAQLQQRQQ 168
Query: 685 ARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENS 744
A P + + P P G + P +PQ + + + + + +
Sbjct: 169 APQLPQPPQQVLPQGMP-PRQAAFPQQGPPEQPPGYPQ-PPQGHPEQVQPQQFL----PA 222
Query: 745 PSIPTEPPKLPPTIPAEPPKLP-PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
PS P LPP +P +PP L P P ++PP P P + P +P PP +
Sbjct: 223 PSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQ--QQQPPQPQAQPPPQN 280
Query: 804 PVPPIPEPKVA--PSVPARPAPPKILDNKEPPIIPRD 838
P P +P P + ++P R
Sbjct: 281 QPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRG 317
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 43.1 bits (101), Expect = 0.002
Identities = 37/152 (24%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 684 AARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLEN 743
A+ TP + P P + E T V EP V + + D +
Sbjct: 408 ASEPTYGTPRPPVEKPRP------EVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHS 461
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP-PKIPP--SIPTEPPKIP- 799
P P EP P V + +P+ P + P + ++ P +
Sbjct: 462 MAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAF 521
Query: 800 ----PQRPPVPPIPEPKVAPSVPARPAPPKIL 827
PQ PV P+P P VA P PAPP I
Sbjct: 522 APVMPQPMPVEPVPVPTVALERPVCPAPPLIA 553
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 42.8 bits (100), Expect = 0.002
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 8 KKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVD 67
++K+K + K K EE A+E K E + K + A +A K+ E K +A A +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 68 SILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGT 127
+ + + + K ++K + E K ++A + EE ++ DE
Sbjct: 1359 AEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEKKKA---DEAKKKAEEDKKKA-DELKKA 1413
Query: 128 DKPAPRLEDLPLKFEEYDDDEEFEEGQEPT--LDEAAGTDKPAPRLEDLPLKFEEYDDDE 185
+ ++ K EE +E ++ E DEA + A + E+ K EE +
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
Query: 186 E-----EEDSEVDE 194
E EE + DE
Sbjct: 1474 EAKKKAEEAKKADE 1487
Score = 35.5 bits (81), Expect = 0.35
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 3 KIPGLKKKRKGKKNK---HKEEEEFDAEELAKYRREHQA----KEEEAGAEASSEGKSDE 55
K KKK + K K E E A+E + +A KEE +++ K++E
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
Query: 56 WQKFKALTAGVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEE 115
+K + KK ++LK+ + ++K + E K ++A + EE
Sbjct: 1390 KKKADEAKKKAEEDKKKA----DELKKAAAAKKKADEAKKKAEEKKKA---DEAKKKAEE 1442
Query: 116 GQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLP 175
+++ DEA + A + E+ K EE +E ++ E EA D+ + E+
Sbjct: 1443 AKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE----EAKKADEAKKKAEEAK 1496
Query: 176 LKFEEYDDDEEEE 188
K +E E +
Sbjct: 1497 KKADEAKKAAEAK 1509
Score = 34.7 bits (79), Expect = 0.52
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 8 KKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQK 58
++ +K + K K EE A+E K E + K +EA A ++ K+DE +K
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 34.0 bits (77), Expect = 1.0
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 25/190 (13%)
Query: 10 KRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSI 69
K+K + K K EE AEE K + +AK+ E + + E K E + KA
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-------- 1690
Query: 70 LKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGTDK 129
E LK+ + +K + +E K K + + EE + +EA +
Sbjct: 1691 -------AEALKKEAEEAKKAEELKKKEAEEKK---KAEELKKAEEENKIKAEEAKKEAE 1740
Query: 130 PAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEED 189
+ K EE DEE E+ + L + R E + EE D+++E+
Sbjct: 1741 EDKK------KAEEAKKDEE-EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
Query: 190 SEVDEDIFDT 199
EVD+ I D
Sbjct: 1794 MEVDKKIKDI 1803
Score = 32.4 bits (73), Expect = 2.8
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 6/138 (4%)
Query: 9 KKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDS 68
K + ++ K EE++ AEE K + + E EA K++E +K +A
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Query: 69 ILKKTHDD----LEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEA 124
LKK ++ E+ K+ + +K E + + E E+ E E
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKK--AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Query: 125 AGTDKPAPRLEDLPLKFE 142
+ ED + E
Sbjct: 1778 EAVIEEELDEEDEKRRME 1795
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPK-IPPSIPTEPPKIPPQRP 803
P + P + T P PSEP PP P P P PP P ++P
Sbjct: 41 PPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPA-PARKP 99
Query: 804 PVPP 807
P+PP
Sbjct: 100 PLPP 103
Score = 36.2 bits (84), Expect = 0.025
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 748 PTEPPKLPPTIPAEPP-----KLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
P E P P PP V + PPS P+ PP P P P
Sbjct: 31 PPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGP--AGPPS 88
Query: 803 PPVPPIPEPKVAPSVPARPAPP 824
P PP P A P P P
Sbjct: 89 PLAPPAP----ARKPPLPPPRP 106
Score = 32.7 bits (75), Expect = 0.43
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA-PSV 817
+ P P P P + PP + PP P PP P P P A P
Sbjct: 29 FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPS 88
Query: 818 PARPAPP 824
P P P
Sbjct: 89 PLAPPAP 95
Score = 29.6 bits (67), Expect = 5.2
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P + PP+ PA PP P P P P P PP P P +PP RP
Sbjct: 54 PPPVSAVWVLPPPSEPAAPP--PDPEPPVPGPAGPPSPLAPPA-----PARKPPLPPPRP 106
Score = 29.6 bits (67), Expect = 5.8
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAP 823
S S P P P P + PP + +PP EP P P P P
Sbjct: 27 SCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSA-VWVLPPPSEPAAPPPDPEPPVP 81
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 41.8 bits (98), Expect = 0.002
Identities = 28/123 (22%), Positives = 38/123 (30%), Gaps = 1/123 (0%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
SP + P P +LPP + P+ EP PPS P PP PQ
Sbjct: 80 QSPQPDQQQQSQAPPSHQYPSQLPPQ-QVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQA 138
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P P+ + P P+ N P Y +P ++ N P
Sbjct: 139 QQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLP 198
Query: 863 RKY 865
Sbjct: 199 SSM 201
Score = 39.2 bits (91), Expect = 0.019
Identities = 34/185 (18%), Positives = 44/185 (23%), Gaps = 22/185 (11%)
Query: 700 SPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIP 759
SP PD Q Q+ P + + T + PS P PP P
Sbjct: 81 SPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQ-QEPYYPPPSQPQPPPAQQPQAQ 139
Query: 760 AEPPKLPPSVPSEP-------------------PKLPPSIPSEPPKIPPSIPTEPPKIPP 800
P PP VP + P P + P + PP P
Sbjct: 140 QPQP--PPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPL 197
Query: 801 QRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPE 860
P PS P P +S + PS +
Sbjct: 198 PSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSG 257
Query: 861 APRKY 865
P
Sbjct: 258 PPPSK 262
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 40.6 bits (94), Expect = 0.004
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 45/255 (17%)
Query: 673 EATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSE-----P 727
+ +SS +C A P+P +P P D D+ P+ +V E
Sbjct: 20 DTSSSLFTKCPQATIPAPA------APCPP----------DADVDPLDKYSVKEAGRYYQ 63
Query: 728 NHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI 787
+ +K+ + + SP P+ P P P+ P+ P P+ PP
Sbjct: 64 SRLKANSACMQRPSGQSPLAPSPACAAPAP---ACPACAPAAPAPAVTCPAPAPACPPAT 120
Query: 788 PPSIP---------TEPPKIPP---QRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPII 835
P+ P P PP Q PP PP+P PK AP+ A P L N+ PP
Sbjct: 121 APTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPA-----AKPIFLHNQLPPPD 175
Query: 836 PRDSSDLTYNTSTPSSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRK 895
+S T T+ +S + P P K + D D++ + + S +D+
Sbjct: 176 YPAASCPTIETAPAAS---PVLEPRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESL 232
Query: 896 S-SQDIQRITSASQS 909
S ++DI+ S +Q+
Sbjct: 233 SLTRDIENAKSTTQA 247
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 41.5 bits (97), Expect = 0.005
Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 20 EEEEFDAEELAKYRRE----HQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSI---LKK 72
E E E+L+ E + +EEEAG E S ++ +KF +GVD L +
Sbjct: 142 NESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK--SGVDDKFFKLDE 199
Query: 73 THDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGTDKPAP 132
++ LE + E + + + E + + E + D +G D+
Sbjct: 200 MNEFLEATEA-----------EEEAALGDE-DDFEDYFQDDSEDGKDDEDFGSGEDEEDD 247
Query: 133 RLEDLPLK--FEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDS 190
++ + F+ + D++ + G + L++ + + D + E+ +DDE+E+D
Sbjct: 248 EEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQ 307
Query: 191 EVDE 194
+ +E
Sbjct: 308 DEEE 311
Score = 40.0 bits (93), Expect = 0.011
Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 71 KKTHDDLEQLKQTSYFQRKPPGPSEYGSE----TSKGNTKEQAWTEFEEGQESTLDE--- 123
K +D+ QL Q Y PS S G EQ W + + + LD+
Sbjct: 17 SKFSEDITQLIQNVYEVFIKLKPSNKKSPLDELVVDGLDAEQIWQQLKLQNKPILDDLNQ 76
Query: 124 -AAGTDKPAPRLEDLP---LKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFE 179
+ L D + + E + D+ ++ LED + E
Sbjct: 77 KYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDE-EEEEEDESLEDEMIDDE 135
Query: 180 EYDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVD 235
+ D E +S +++ D D + A +E+ FD S VD
Sbjct: 136 DEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVD 191
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 41.3 bits (97), Expect = 0.005
Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 1/68 (1%)
Query: 756 PTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAP 815
P P+ P P P + P PP P P P P P P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440
Query: 816 SVPARPAP 823
+ A
Sbjct: 441 AAAASAGD 448
Score = 35.5 bits (82), Expect = 0.30
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 765 LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP-PVPPIPEPKVAPSVPARPAP 823
PPS P P PP P P + RP P P P P+ A PA
Sbjct: 383 APPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAA 442
Query: 824 P 824
Sbjct: 443 A 443
Score = 34.3 bits (79), Expect = 0.62
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 754 LPPTIP-----AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
L P P L P+ P + P PP P P +PP P P
Sbjct: 361 LAPGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPP--PAAAPPVPPAAPARPAA 418
Query: 809 PEPKVAPSVPARPAPP 824
P AP+ PA APP
Sbjct: 419 ARPAPAPAPPAAAAPP 434
Score = 31.6 bits (72), Expect = 4.1
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 785 PKIPPSIPTEPPKIPPQRPP---VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSD 841
P P + P P PP PP+P A ARPAP P S+D
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPA--PPAAAAPPARSAD 439
Query: 842 LTYNTSTPSS 851
S
Sbjct: 440 PAAAASAGDR 449
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 41.1 bits (97), Expect = 0.005
Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+P+ P P PA P P P + P P P P+
Sbjct: 422 APAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481
Query: 804 PVP-PIPEPKVAPSVPARPAPP 824
P P P P AP+ PA PA P
Sbjct: 482 PAPPAAPAPAAAPAAPAAPAAP 503
Score = 39.6 bits (93), Expect = 0.016
Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ + P P P PPS P PS PP PS P P
Sbjct: 419 AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA--PSPPPAAAPSAQPAPAPAAAPEP 476
Query: 804 PVPPIPEPKVAPSVPARPAPP 824
P P P AP+ A PA P
Sbjct: 477 TAAPAPAPPAAPAPAAAPAAP 497
Score = 39.2 bits (92), Expect = 0.025
Identities = 17/119 (14%), Positives = 30/119 (25%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
PS + L + +L + + P + P P
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA 424
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P+P AP+ P P P ++ + + + T AP
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483
Score = 38.8 bits (91), Expect = 0.029
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 9/121 (7%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ + P E P A P P V P K + P PP P
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD--GWPAKAGGAAPAAPPPAPAPAA 689
Query: 804 PVPPIPEPK--VAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEA 861
P P AP+ A P + D P + ++ + + P
Sbjct: 690 PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA-----SAPSPAADDPVPLPPE 744
Query: 862 P 862
P
Sbjct: 745 P 745
Score = 38.4 bits (90), Expect = 0.040
Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLP-PSIPSEPPKIPPSIPTEPPKIPPQR 802
+P+ PP PA P S P +P P P P P PP
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRD 838
P P P AP ++ ++ P + D
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
Score = 38.0 bits (89), Expect = 0.049
Identities = 19/77 (24%), Positives = 20/77 (25%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P PA P+ P PPS P P Q P P
Sbjct: 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
Query: 808 IPEPKVAPSVPARPAPP 824
A PA PA P
Sbjct: 472 AAPEPTAAPAPAPPAAP 488
Score = 36.9 bits (86), Expect = 0.12
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ P P P P P P + PS P P+ EP P P
Sbjct: 425 PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
Query: 804 PVPPIPEPKVA-PSVPARPAPP 824
P P P A P+ PA PA
Sbjct: 485 PAAPAPAAAPAAPAAPAAPAGA 506
Score = 36.9 bits (86), Expect = 0.12
Identities = 17/81 (20%), Positives = 23/81 (28%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ PA + P+ P+ P PPS P P
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456
Query: 804 PVPPIPEPKVAPSVPARPAPP 824
P P + AP+ A P P
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPT 477
Score = 36.1 bits (84), Expect = 0.18
Identities = 16/77 (20%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P P P P+ P P P + P+ P P P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPA-PAPAAAPEP 476
Query: 808 IPEPKVAPSVPARPAPP 824
P AP PA
Sbjct: 477 TAAPAPAPPAAPAPAAA 493
Score = 35.7 bits (83), Expect = 0.23
Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 1/81 (1%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPP-SIPSEPPKIPPSIPTEPPKIPPQ 801
P+ P PP+ P P P+ P+ P
Sbjct: 429 PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488
Query: 802 RPPVPPIPEPKVAPSVPARPA 822
P P A A A
Sbjct: 489 APAAAPAAPAAPAAPAGADDA 509
Score = 35.3 bits (82), Expect = 0.33
Identities = 22/144 (15%), Positives = 34/144 (23%), Gaps = 3/144 (2%)
Query: 684 AARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLEN 743
A P+ + P P+ V+ P+
Sbjct: 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT---EPPKIPP 800
+P+ P P P+ P +P PP P
Sbjct: 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD 736
Query: 801 QRPPVPPIPEPKVAPSVPARPAPP 824
P+PP P+ P+ PP
Sbjct: 737 DPVPLPPEPDDPPDPAGAPAQPPP 760
Score = 33.4 bits (77), Expect = 1.4
Identities = 21/81 (25%), Positives = 27/81 (33%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ P P +P PP P+ P P P P +P
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758
Query: 804 PVPPIPEPKVAPSVPARPAPP 824
P PP P P AP+ P+PP
Sbjct: 759 PPPPAPAPAAAPAAAPPPSPP 779
Score = 33.0 bits (76), Expect = 1.6
Identities = 18/86 (20%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
S + P A P+ + P P P+ P P P
Sbjct: 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459
Query: 804 PVP-----PIPEPKVAPSVPARPAPP 824
P P P P+ PAPP
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPP 485
Score = 31.9 bits (73), Expect = 3.7
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP-PSIPTEPPKIPPQRPPVP 806
P P P + PS P P+ EP P P+ P P P
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499
Query: 807 PIPEPKVAPSVPARPAPPKILD 828
P + R P+IL
Sbjct: 500 PAAPAGADDAATLRERWPEILA 521
Score = 31.5 bits (72), Expect = 5.1
Identities = 20/97 (20%), Positives = 23/97 (23%), Gaps = 7/97 (7%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P P P PP P+ P+ + P T P
Sbjct: 659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPA 718
Query: 804 PVPPI-------PEPKVAPSVPARPAPPKILDNKEPP 833
PP P P VP P P D P
Sbjct: 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
Score = 31.5 bits (72), Expect = 5.6
Identities = 14/111 (12%), Positives = 23/111 (20%), Gaps = 1/111 (0%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPP-KIPPQRPPVPPIPEPK 812
L A P + P+ + P P P P P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444
Query: 813 VAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
+ P P ++ + + A+ AP
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495
Score = 30.7 bits (70), Expect = 8.1
Identities = 27/177 (15%), Positives = 35/177 (19%), Gaps = 7/177 (3%)
Query: 648 PPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQH 707
P P E E H+ A+ P +P
Sbjct: 626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP-AKAGGAAPAAPPPA 684
Query: 708 QNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPP 767
P + D P P P P
Sbjct: 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP--LP 742
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P +PP + PP P+ P PP PP E + A
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPA---AAPPPSPP-SEEEEMAEDDAPSMDD 795
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 41.0 bits (96), Expect = 0.006
Identities = 31/126 (24%), Positives = 38/126 (30%), Gaps = 21/126 (16%)
Query: 688 PSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSI 747
P RD P Q + M E + P+ +P E +P I
Sbjct: 225 PDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPK-----------SPEKAPPI 273
Query: 748 PTEPPKLPPTIPAEPPKLPPSVP---SEPPKLPPSIPSEPPKIPPSIPTEP-----PKIP 799
T P PK P L PS +E PK S P P+
Sbjct: 274 DTTE--EELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPK 331
Query: 800 PQRPPV 805
PQ PPV
Sbjct: 332 PQSPPV 337
Score = 39.8 bits (93), Expect = 0.012
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 737 LMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP--PKIP-PSIPT 793
D + P P + T + PK ++ + P+ P I + K P S
Sbjct: 230 SRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKE 289
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
+R P P PK P D P P
Sbjct: 290 SEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKP 332
Score = 39.4 bits (92), Expect = 0.017
Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 12/185 (6%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
+ + P LP + +E K P +P + S+ +E P T PK P +
Sbjct: 215 HSKSPSKSGIPDLPSSRDSEKTK-----PEKPQQETSSMDTEKSSAPKPRETLDPKSPEK 269
Query: 802 RPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEA 861
PP+ E +P + + + P ++ S S K+
Sbjct: 270 APPIDTTEEELKSPEASPKESEEASARKRSPSLLS-PSPKAESPKPLASPGKSPRDPLSP 328
Query: 862 PRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVAPDVF 921
K V D N R+ S K + + + + + N VAPD
Sbjct: 329 RPKPQSPPVNDFRA------NLRRREVVKDKSPKDEPEFKNVFGKLRKTETKNYVAPDEL 382
Query: 922 SQQIT 926
I
Sbjct: 383 KDNIL 387
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 39.8 bits (94), Expect = 0.014
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP-----PKI 798
P P A + P P P S P + P +P T ++
Sbjct: 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPP 824
+ + + A + ARP
Sbjct: 430 QRAQGATKA-KKSEPAAASRARPVNS 454
Score = 37.2 bits (87), Expect = 0.088
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPA 822
P P P PP+ S P+ PP P PP P+ AP+VP
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPP--QAPAVPPPPASAPQQAPAVPLPET 418
Query: 823 PPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
++L ++ + ++ + +SR + +
Sbjct: 419 TSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALER 458
Score = 34.1 bits (79), Expect = 0.78
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 10/143 (6%)
Query: 697 HSPSPTPDVQHQNL--MGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKL 754
+P P P+V Q+ T V+ P ++P P
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPP-----ASAPQQAPAVPLP 416
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP-PVPPIPEPKV 813
T + K S P+ + P + ++ RP P P
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPV-NSALERLASVRPAPSALEKAPAK 475
Query: 814 APSVPARPAPPKILDNKEPPIIP 836
+ + P + KEP P
Sbjct: 476 KEAYRWKATNP-VEVKKEPVATP 497
Score = 33.7 bits (78), Expect = 1.2
Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 17/176 (9%)
Query: 789 PSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTST 848
P+ P P++PPQ + AP+ P + P P+ + + +T
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV-PPPPASAPQQAPAVPLPETT 419
Query: 849 PSSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQ 908
A + + +K + +R + ++R+ S
Sbjct: 420 SQLLAAR-QQLQRAQGATKA--------------KKSEPAAASRARPVNSALERLASVRP 464
Query: 909 SRKASNEVAPDVFSQQITSTNIIENYTTDSSPFIEDHATAVNHEATAEPIQHTADQ 964
+ A + + + +TN +E + + A+ HE T E A +
Sbjct: 465 APSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAE 519
Score = 31.0 bits (71), Expect = 6.2
Identities = 19/154 (12%), Positives = 33/154 (21%), Gaps = 8/154 (5%)
Query: 684 AARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLEN 743
+ + +PT V PQ ++ T L+ +
Sbjct: 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET-TSQLLAARQQ 428
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
V S +L P+ E +
Sbjct: 429 LQRAQGATK--AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKAT-N 485
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPR 837
PV EP P + + K P + +
Sbjct: 486 PVEVKKEPVATPKALKKA----LEHEKTPELAAK 515
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 39.5 bits (92), Expect = 0.018
Identities = 15/63 (23%), Positives = 18/63 (28%)
Query: 770 PSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDN 829
+E P P P+ P PP T P P K P R PK
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Query: 830 KEP 832
+
Sbjct: 73 WKL 75
Score = 33.7 bits (77), Expect = 0.85
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
+P PP+ A P PP+ + P + + P+ +P + +P
Sbjct: 15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWK 74
Query: 809 PE 810
E
Sbjct: 75 LE 76
Score = 32.6 bits (74), Expect = 2.0
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
P P P P P P + + P P E PK +P P+P
Sbjct: 17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAP--RAEKPK--KDKPRRERKPKP 69
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 39.7 bits (93), Expect = 0.018
Identities = 60/428 (14%), Positives = 113/428 (26%), Gaps = 55/428 (12%)
Query: 798 IPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASIT 857
+P + P + + + + K + ++ +
Sbjct: 376 LPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQV---QAANAEAVAEA 432
Query: 858 NPEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVA 917
+ A + E +D++ + A+N+ Q V+ S+ SQ + +S A E
Sbjct: 433 DASAEPADTVEQALDDESELLAALNAE---QAVILSQAQSQGFEASSSLDADNSAVPEQI 489
Query: 918 PDVFSQQITSTNIIENY--------------TTDSSPFIEDHATAVNHEA-----TAEPI 958
Q + + ++ + T D + ED + + + P+
Sbjct: 490 DSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESNGLDEGDYAQDSAPL 549
Query: 959 QHTADQFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTISQDTLFSQPPTEPQK 1018
D ++ S + + Q AA P
Sbjct: 550 DAYQDDYVAFSSESYNALSDDEQHSA--NVQSAQSAAEAQPSSQSLSPISAVTTAAASLA 607
Query: 1019 EN-----VFAQNDDLFDAFSAKFESVKINEEKSSAFD--PFGGTSAFGDAGTLSSEQPSD 1071
++ V A D L A S K + K S+ D P S A S +P+
Sbjct: 608 DDDILDAVLAARDSLLSDLDA--LSPKEGDGKKSSADRKPKTPPSR---APPASLSKPAS 662
Query: 1072 VEGFGTDDGFDAFLAMGPPPTPQCTPTPTPAKQRKTSADSDEDSDFNVFIRPQNFENNLQ 1131
D + P T P + + + + RP E
Sbjct: 663 S----PDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEE---- 714
Query: 1132 PNTALVPPSLAPPPKSPAVPASQDSSPRFNPFDKGDVFAAPKENIFTQPDELNLTMQRTD 1191
P +A P A + S + D + E T ++ Q
Sbjct: 715 ------APEVASANDGPNNAAEGNLSE--SVEDASNSELQAVEQQATHQPQVQAEAQSPA 766
Query: 1192 SQETPPTP 1199
S
Sbjct: 767 STTALTQT 774
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 39.2 bits (91), Expect = 0.019
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKIL 827
+ P+EP + PSE P P PP P K A PA AP
Sbjct: 205 AAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAA--PAAAAPVSSG 262
Query: 828 DN 829
D+
Sbjct: 263 DS 264
Score = 36.5 bits (84), Expect = 0.12
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 759 PAEPPKLPPSVPSEPPKLP-PSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
PAEP + PSE P P + P P P P P P
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258
Score = 35.8 bits (82), Expect = 0.23
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 748 PTEPPKLPPTIPAEPPKLP-PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
P EP + P+E P P + P P P+ P T P
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPA---KTAAPAAAAP 258
Score = 30.8 bits (69), Expect = 7.8
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 789 PSIPTEPPKIPPQRP-PVPPIPEPKVAPSVPARPAPP 824
S P P P P P P P A PA AP
Sbjct: 83 GSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQ 119
Score = 30.4 bits (68), Expect = 9.7
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 742 ENSPSIPTEPPKLP-PTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPP 789
E P+E P P A P P P+ P P+ + P P
Sbjct: 212 EEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAP--APAKTAAPAAAAP 258
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 37.8 bits (88), Expect = 0.020
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 139 LKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVDEDIFD 198
+ + + FEEG E LD + +D ++ +DDE+E+D E+ E + +
Sbjct: 99 DIKAKDKEVDAFEEGDEDELDY---DEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIE 155
Query: 199 TAFVDLVTTED 209
VD +D
Sbjct: 156 DDEVDEDEDDD 166
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 38.4 bits (89), Expect = 0.021
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 693 MRDIHSPSPTPD---VQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPT 749
+ D+ +P P D ++ N+ E T ++ S + V+ N P P
Sbjct: 115 LADLLTPPPDVDEDALKEANVNETESSTDESDRS-SHSHEVR--------SKSNFPMGPP 165
Query: 750 EP--PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P P+ PP P PP +P PP + PP P PP IPP P P
Sbjct: 166 SPWNPRFPPGPPPPPPGFGRH-GEKPSGWPPFLSGWPPPFPLG----PPMIPPPPPMSPD 220
Query: 808 IPE 810
E
Sbjct: 221 FGE 223
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 38.8 bits (90), Expect = 0.022
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 739 DDLENSPSIPTEPPKLP--PTIPAEPPKLP-PSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
+DL P LP P + A+ P+VP+ + + PS P ++ +
Sbjct: 251 EDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDV 310
Query: 796 PKIPPQRPPVPPIPEPKVAPSVPARPAPPKI 826
P++ P P P P+VP PA P++
Sbjct: 311 PQVAPVAAPAAP-----EVPAVPVVPAAPQV 336
Score = 38.0 bits (88), Expect = 0.039
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKL----PPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
E + P A LP +VP+ P++P+ + + P+ P P
Sbjct: 250 GEDLIIKPKSKAAGSNLP-AVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLP 308
Query: 805 VPPIPEPKVAPSVPARPAPPKI 826
P P AP+ P PA P +
Sbjct: 309 DVPQVAPVAAPAAPEVPAVPVV 330
Score = 30.3 bits (68), Expect = 9.9
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 708 QNLMGDEDITPIFPQTVSEPNHVKSVTRNLMD-DLENSPSIPTEPPKLPPTIPAEP--PK 764
L+G + I P++ + +++ +V D +P++P + P+ P P
Sbjct: 244 HILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPN 303
Query: 765 LP--PSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
+ P VP P P+ P P P +P P
Sbjct: 304 VAVLPDVPQVAPVAAPAAPEVP--AVPVVPAAP 334
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 39.4 bits (91), Expect = 0.022
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKV 813
+ P P P + P +P P +P P +P + P IP P IP P P PEP V
Sbjct: 558 IEPDEPIIPDPVDPVIPD--PVIPD--PVDPDPVDPVIPD--PVIPDPVDPDPVDPEP-V 610
Query: 814 APSVPARPAPPKILDNKEPPI 834
P +P P P I + PPI
Sbjct: 611 DPVIP-DPTIPDIGQSDTPPI 630
Score = 34.4 bits (78), Expect = 0.77
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 765 LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
+ P P P + P IP P IP P +P + P P P IP+P V P P
Sbjct: 558 IEPDEPIIPDPVDPVIPD--PVIPD--PVDPDPVDPVIPD-PVIPDPVDPDPVDPEPVDP 612
Query: 825 KILDNKEPPIIPRDSSDLTYNTSTP 849
I D P I D+ +T + P
Sbjct: 613 VIPDPTIPDIGQSDTPPITEHQFRP 637
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.8 bits (91), Expect = 0.023
Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 33/229 (14%)
Query: 14 KKNKHKEEEEFDAEELA---KYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSIL 70
K EEE + + KEE A S + ++ + + ++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQI---DQVLIFLSGMV 63
Query: 71 KKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGTDKP 130
K T D E + + K + + + E+ D+ K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 131 APRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDS 190
L ++ DDD+ L+D ++ DDD+++ED
Sbjct: 124 IDVLNQADDDDDDDDDDD----------------------LDD-----DDIDDDDDDEDD 156
Query: 191 EVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKVIK 239
+ D+D D D E L + D D D K K
Sbjct: 157 DEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAK 205
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 37.1 bits (86), Expect = 0.027
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPS----VPSEPPKLP-----PSIPSEPPKIPPSIP 792
++ P+ +P P +PA+ P +P VP + P P++P P P P
Sbjct: 45 QHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLP--QPAQQPFQP 102
Query: 793 TEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
PQ+P P P + P P P PP PP++P
Sbjct: 103 QPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLLP 146
Score = 35.2 bits (81), Expect = 0.14
Identities = 17/71 (23%), Positives = 25/71 (35%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPE 810
+ PT +P P+ P+ + P P P +PPQ P P P
Sbjct: 79 QHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPM 138
Query: 811 PKVAPSVPARP 821
+ P +P P
Sbjct: 139 QPLPPLLPDLP 149
Score = 33.2 bits (76), Expect = 0.53
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP-----PSIPTEPPKIP 799
P PP P LP P P + +P + P P++P +
Sbjct: 41 PVSQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPF 100
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPR 837
+P PP P+ + P P P PP PP+ P
Sbjct: 101 QPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPM 138
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 39.1 bits (91), Expect = 0.027
Identities = 25/186 (13%), Positives = 41/186 (22%), Gaps = 17/186 (9%)
Query: 641 QDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPS 700
+ P P + + A + A + + +
Sbjct: 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGA-------ALAPKAAAAAAATRAEA 425
Query: 701 PTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPA 760
P D V + ++ + D+ + P P A
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP-ADSGSASAPASDA 484
Query: 761 EPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ--RPPVPPIPEPKVAPSVP 818
PP EP P + P + P P P+ P P
Sbjct: 485 -----PPDAAFEPA--PRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTP 537
Query: 819 ARPAPP 824
A AP
Sbjct: 538 AAAAPA 543
Score = 36.0 bits (83), Expect = 0.25
Identities = 19/131 (14%), Positives = 29/131 (22%), Gaps = 14/131 (10%)
Query: 744 SPSIPTEPPKLPPTIPAEPP---KLPPSVPSEPPKLPPSIPS-----EPPKIPPSIPT-E 794
S P + PP P + + +P
Sbjct: 394 SAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKA 453
Query: 795 PPKIPPQRPPVPPIPEPKVAP---SVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSS 851
+ +P S PA APP P S T +
Sbjct: 454 NARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA--PSAATPAAVPDAR 511
Query: 852 RKASITNPEAP 862
A+ + +AP
Sbjct: 512 APAAASREDAP 522
Score = 35.2 bits (81), Expect = 0.37
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 751 PPKLPPTIPAEPPKLPPSV------PSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P ++ +PA + +V P + T PP P
Sbjct: 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA-PPAAPA 431
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P + + P P K + S +S AS P+A
Sbjct: 432 PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490
Score = 35.2 bits (81), Expect = 0.40
Identities = 16/97 (16%), Positives = 21/97 (21%), Gaps = 5/97 (5%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
D + + P A ++PP S + PP EP
Sbjct: 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEP---- 492
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
P A PA D P
Sbjct: 493 -APRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
Score = 30.6 bits (69), Expect = 9.2
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPA 819
P ++ +VP+ + ++ + ++ + AP PA
Sbjct: 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAP--PA 428
Query: 820 RPAPPKILDNKEPP 833
PAPP D +
Sbjct: 429 APAPPATADRGDDA 442
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 37.9 bits (88), Expect = 0.030
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 10/114 (8%)
Query: 699 PSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTI 758
P P D ++ P E V + + D + + P+
Sbjct: 45 PKPQGDRDEPRVLPAVVQVVALPTQPPE-----GVAQEIQDA--GDAAAASVDPQPVAQP 97
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPK 812
P E P VP P P + P P +P P +P P P
Sbjct: 98 PVEST--PAGVPVAAQTPKPVKPPKQPPAGAV-PAKPTPKPEPKPVAEPAAAPT 148
Score = 30.6 bits (69), Expect = 5.5
Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 4/91 (4%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP--- 803
+P + + P + P + Q P
Sbjct: 57 LPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPV 116
Query: 804 -PVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
P P V +P P + + P
Sbjct: 117 KPPKQPPAGAVPAKPTPKPEPKPVAEPAAAP 147
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 37.9 bits (89), Expect = 0.044
Identities = 14/82 (17%), Positives = 23/82 (28%)
Query: 731 KSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPS 790
K + L+ + E E P + + P EP K
Sbjct: 217 KELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Query: 791 IPTEPPKIPPQRPPVPPIPEPK 812
+ +P + PP EP+
Sbjct: 277 VNVQPAQFQSFDPPPLATTEPR 298
Score = 35.2 bits (82), Expect = 0.33
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 771 SEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPA 822
E + + S + + PK Q+ P K A V +PA
Sbjct: 231 EEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPA 282
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 38.0 bits (88), Expect = 0.050
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 775 KLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPI 834
+L IPS+ S + PK PVP P APS P PP+ P+
Sbjct: 318 ELLAKIPSQRVPPKESDAADGPK------PVPTKPVTPEAPSPPIEEEPPQPKAVVPRPL 371
Query: 835 IPRDS-SDLTYNTS----TPSSRKASITNPEAPRKYSKENVI 871
P + DL TS PSS AS + +A K ++ +V+
Sbjct: 372 SPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVV 413
Score = 35.7 bits (82), Expect = 0.24
Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 23/233 (9%)
Query: 646 RRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDV 705
+R PP + + + T EA S ++ P + + +P
Sbjct: 326 QRVPPKESD---AADGPKPVPTKPVTPEAPSPPIEE-------EPPQPKAVVPRPLSPYT 375
Query: 706 QHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPK- 764
+++L P S P KSV + P +P PA+
Sbjct: 376 AYEDLKPPTSPIPT--PPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAK 433
Query: 765 ----LPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP---EPKVAPSV 817
L P E K PP+ PS S P P P + P
Sbjct: 434 KTRPLSPYARYEDLK-PPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPA 492
Query: 818 PARP-APPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKEN 869
RP +P + D+ +PP P ++ + + S+ + AP +
Sbjct: 493 NMRPLSPYAVYDDLKPPTSPSPAAPVG-KVAPSSTNEVVKVGNSAPPTALADE 544
Score = 35.3 bits (81), Expect = 0.32
Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI------------------P 788
IP++ + A+ PK P+ P P P I EPP+ P
Sbjct: 323 IPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKP 382
Query: 789 PS--IPTEPPKIPPQRPPVP---------PIPEPKVAPSVP-----------ARPAPPKI 826
P+ IPT P P V +P P A +VP RP P
Sbjct: 383 PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYA 442
Query: 827 -LDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKENVID 872
++ +PP P ++ + S S+ AP + +
Sbjct: 443 RYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAP 489
Score = 31.8 bits (72), Expect = 3.4
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI----- 798
+P P E +L IP++ S ++ PK P+ P P P I EPP+
Sbjct: 311 APLTPME--ELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVP 368
Query: 799 -------------PPQRP-PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTY 844
PP P P PP P + SV A P EP ++P S
Sbjct: 369 RPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKP------AEPDVVPSPGSASNV 422
Query: 845 NTSTPSSRKASITNPEAP 862
P+ +A T P +P
Sbjct: 423 PEVEPAQVEAKKTRPLSP 440
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 37.6 bits (87), Expect = 0.057
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
PK A P P S P+ P P S S P S K P + PE
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPAS--AVEEKSPSEESATATAPES 134
Query: 812 KVAPSVPA 819
+ SVP+
Sbjct: 135 -PSTSVPS 141
Score = 33.7 bits (77), Expect = 0.88
Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 757 TIPAEPPKLPPSVPSEPPKLPPSIPSEPP---KIPPSIPTEPPKIPPQRPPVPPIPEP 811
PA P P+ PP P S S P S E P +P
Sbjct: 85 APPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
Score = 30.6 bits (69), Expect = 8.3
Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ-RPPVPPIPEPKVAPSVPARP 821
PK + P P S P+ P P S + P P E A + P
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATA----P 132
Query: 822 APPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITN 858
P +P SD S R+ +I
Sbjct: 133 ESPS-------TSVPSSGSDAASTLVVGSERETTIEE 162
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 37.7 bits (87), Expect = 0.061
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 1051 PFGGTSAFGDAGTLSSEQPSDVEGFGTDDGFDAFLAMGP------PPTPQCTPTPTPAKQ 1104
P A A + Q + + F FL P P P PA
Sbjct: 138 PAAQALAHAAAVRTAPRQEHALSAVP-EQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIA 196
Query: 1105 RKTSADSDEDSDFNVFIRPQNFENNLQPNTALVPPSLAPPPKSPAVPAS 1153
+A + D + + F+ + L P +L P +PA PA+
Sbjct: 197 AALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAA 245
Score = 35.0 bits (80), Expect = 0.47
Identities = 31/232 (13%), Positives = 54/232 (23%), Gaps = 44/232 (18%)
Query: 631 SSKDDLMDNKQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAART--- 687
+++ D P P +P P K + +S + AA
Sbjct: 57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116
Query: 688 --------PSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMD 739
P+ P+R PSP +T H
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAV---------RTAPRQEHA--------- 158
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT------ 793
+ P +L P V + P +P+ +
Sbjct: 159 -------LSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDE 211
Query: 794 --EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLT 843
+ +P + P V A AP + P++ +L
Sbjct: 212 QLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQNDEELK 263
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 37.7 bits (87), Expect = 0.062
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 733 VTRNLMDDLENSPSIPTEP-PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
T D+ E + S P P P P++P EP L P + I +PP+ PP++
Sbjct: 435 KTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPV------EHTTVILHQPPQSPPTV 488
Query: 792 PTEPPKIPPQRP 803
+P P +R
Sbjct: 489 AIKPAPPPSRRR 500
Score = 35.8 bits (82), Expect = 0.27
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 751 PPKLPPTIPAEPPKLPPSVP--------SEPPKLPPSIPSEP-PKIPPSIPTEPPKIPP- 800
P + P T+P PK P S+ + S P P P PS+P EP + P
Sbjct: 412 PWRKPRTLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPV 471
Query: 801 QRPPVPPIPEPKVAPSVPARPAPP 824
+ V P+ P+V +PAPP
Sbjct: 472 EHTTVILHQPPQSPPTVAIKPAPP 495
Score = 32.7 bits (74), Expect = 2.3
Identities = 54/276 (19%), Positives = 79/276 (28%), Gaps = 49/276 (17%)
Query: 688 PSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSI 747
P PTP + + TP P +P+ V + +E++ I
Sbjct: 420 PWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPS--VPVEPAHLTPVEHTTVI 477
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPS---------------------EPPKLPPSIP----- 781
+PP+ PPT+ +P P E P+ P
Sbjct: 478 LHQPPQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQ 537
Query: 782 ------------SEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDN 829
+ PPK+ PS P PP P P PS R P
Sbjct: 538 DGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGP 597
Query: 830 KEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQD 889
++ + P S P R + +E +L Q+ KS +
Sbjct: 598 RQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRER-----LLEQSTGPKPKSFWE 652
Query: 890 VVTSRKSSQDIQ----RITSASQSRKASNEVAPDVF 921
+ R S Q R A+QS P VF
Sbjct: 653 MRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVF 688
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 37.2 bits (86), Expect = 0.083
Identities = 45/195 (23%), Positives = 70/195 (35%), Gaps = 14/195 (7%)
Query: 642 DQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSP 701
+++ RRP + P +D ++ ++ A+ TP R S
Sbjct: 397 EESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSNPPPRASETPEQETSRSSSEVSL 456
Query: 702 TPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAE 761
P HQ+ + E + E + + +R++ +D S + T +
Sbjct: 457 DP---HQSELKSEK-----KKARPEVSKQRFPSRDVWEDAPESQELVTTEETPEEVKSSS 508
Query: 762 PPKLPPSVPSEP-PKLPPSIPSEPPKIP----PSIPTEPPK-IPPQRPPVPPIPEPKVAP 815
P P++PS P P S +PP +P P IP P K Q K P
Sbjct: 509 PGVTKPAIPSRPKKGKPTSEKRKPPPVPKKPKPQIPARPAKLQKQQAGEEANSSAFKPKP 568
Query: 816 SVPARPAPPKILDNK 830
VPARP KI K
Sbjct: 569 RVPARPGGSKIAALK 583
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 36.3 bits (84), Expect = 0.084
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 732 SVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
S++ ++ + P EP LP T PA P P + + P P K
Sbjct: 101 SMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKS 160
Query: 792 P--TEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P P + A P
Sbjct: 161 PRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTAT 196
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 36.8 bits (85), Expect = 0.087
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 778 PSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPR 837
PS P P P+ P P P + PP PP P + P A PA P+ P
Sbjct: 9 PSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPA---- 64
Query: 838 DSSDLTYNTSTPSSRKASITNPEAPR 863
+T+++S P + + A
Sbjct: 65 ---GVTFSSSAPPRPPLGLDDAPAAT 87
Score = 35.3 bits (81), Expect = 0.27
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
PP P+ P PP P P+ P P P PP P P +RP P
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63
Query: 808 IPEPKVAPSVPARPAPPKILDN 829
V S A P PP LD+
Sbjct: 64 ---AGVTFSSSAPPRPPLGLDD 82
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 37.3 bits (86), Expect = 0.11
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 25/206 (12%)
Query: 6 GLKKKRKGKKNKHKEEEEFDAEELAKYR--------REHQAKEEE---AGAEASSEGKSD 54
GL + + E+ D EELA E +A+E E G S +
Sbjct: 3817 GLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSEN 3876
Query: 55 EWQKFKALTAGVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFE 114
E + + L + +D+ + S ++ P+E ++ + EQ+ E
Sbjct: 3877 ENSD----SEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNE 3932
Query: 115 EGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTL--DEAAGTDKPAPRLE 172
S D D A ED + +E +++ + G + + D +P P E
Sbjct: 3933 SDLVSKED-----DNKAL--EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Query: 173 DLPLKFEEYDDDEEEEDSEVDEDIFD 198
DL L E+ DE+E D D D+ D
Sbjct: 3986 DLDLP-EDLKLDEKEGDVSKDSDLED 4010
Score = 35.7 bits (82), Expect = 0.33
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 26/165 (15%)
Query: 72 KTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEE---------GQESTL- 121
+DL + +Q S Q S+ S+ E + +E G + +
Sbjct: 3911 PNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQ 3970
Query: 122 -DEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEE 180
D +P P EDL L E+ DE+ + + + LED+ + E
Sbjct: 3971 PDIQENNSQPPPENEDLDLP-EDLKLDEKEGDVSKDS------------DLEDMDM--EA 4015
Query: 181 YDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDG 225
D+++EE D+E DE + D ++ T D + S + +DD
Sbjct: 4016 ADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDE 4060
Score = 31.1 bits (70), Expect = 8.4
Identities = 17/79 (21%), Positives = 34/79 (43%)
Query: 117 QESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPL 176
++ LDE G LED+ ++ + + +E E EP DE + +
Sbjct: 3991 EDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQD 4050
Query: 177 KFEEYDDDEEEEDSEVDED 195
F + +D+E+ + + E+
Sbjct: 4051 DFSDLAEDDEKMNEDGFEE 4069
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 36.7 bits (85), Expect = 0.12
Identities = 14/88 (15%), Positives = 19/88 (21%), Gaps = 2/88 (2%)
Query: 737 LMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPP 796
M PS + PT + P + P PP +P + P
Sbjct: 666 GMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAG--PA 723
Query: 797 KIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P P P
Sbjct: 724 PCGSSLIASPTAPPEPEPPGAEQADGAE 751
Score = 36.7 bits (85), Expect = 0.12
Identities = 24/116 (20%), Positives = 28/116 (24%), Gaps = 17/116 (14%)
Query: 752 PKLPPTIPAEPPKLPPS---VPSEPPKLPPSIP--SEPPKIPPSIPTEPPKIPPQRPPVP 806
P + T P P P +P +P + P P P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 807 PIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P P P PP L P SS AS T P P
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDL----PAAAGPAPC--------GSSLIASPTAPPEP 739
Score = 33.6 bits (77), Expect = 1.3
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPP-----SIPSEPPKIPPSIPTEPPK 797
P P +P +PA PS + + P ++ + P P
Sbjct: 652 GEAGGPGVPGPVPVGMPAH--TARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGG 709
Query: 798 IPPQRPP---VPPIPEPKVAPSVPARPAPPK 825
+PP P P + P P P+
Sbjct: 710 LPPPPDLPAAAGPAPCGSSLIASPTAPPEPE 740
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 36.8 bits (85), Expect = 0.12
Identities = 26/125 (20%), Positives = 36/125 (28%), Gaps = 15/125 (12%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPP-SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
D E+ SI P++ + PPK PP S + L + PS P P +
Sbjct: 516 DAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPS-----TAGSPRPKPSL 570
Query: 799 PP--QRPPVPPIPE-------PKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTP 849
+ V + P +K D T N TP
Sbjct: 571 GKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTP 630
Query: 850 SSRKA 854
SS
Sbjct: 631 SSSLV 635
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 36.6 bits (84), Expect = 0.12
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 4/135 (2%)
Query: 737 LMDDLENSPSIP---TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT 793
L D+ N + E ++PP A P + P P +PP + P + P
Sbjct: 338 LPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLV 397
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRK 853
P +I P P + V L KEP + S D +
Sbjct: 398 APTEINPSFLASPRKKMKREKLPVTFGALDDT-LAWKEPSKEDQTSEDGKMLAIMGEAAA 456
Query: 854 ASITNPEAPRKYSKE 868
A P+ +K +
Sbjct: 457 ALALEPKKKKKEKEG 471
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 36.1 bits (83), Expect = 0.14
Identities = 13/83 (15%), Positives = 26/83 (31%)
Query: 738 MDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPK 797
++++ + ++PTEP + P + + + I P P K
Sbjct: 114 LNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAK 173
Query: 798 IPPQRPPVPPIPEPKVAPSVPAR 820
P+ P AP +
Sbjct: 174 TEPKPVAQTPKRTEPAAPVASTK 196
Score = 33.0 bits (75), Expect = 1.4
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 8/72 (11%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
PK P PK P P+ P K P + T PK PV
Sbjct: 165 PKKPQATAKTEPKPVAQTPKRTE---PAAPVASTKAPAATSTPAPKETATTAPV-----Q 216
Query: 812 KVAPSVPARPAP 823
+P+
Sbjct: 217 TASPAQTTATPA 228
Score = 32.6 bits (74), Expect = 1.6
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPA 822
PK P + PK P + P+ P K P P AP A PA
Sbjct: 165 PKKPQATAKTEPKPV---AQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPA 221
Query: 823 PP 824
Sbjct: 222 QT 223
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 36.2 bits (84), Expect = 0.14
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
++P+ P + PS ++ P + PT P K ++P V VA PA PK
Sbjct: 173 TLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVP-PATSGKPK 229
Score = 35.4 bits (82), Expect = 0.27
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 17/135 (12%)
Query: 689 SPTPMRDIHSPSPTPDVQHQ-NLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSI 747
SPTP + +P TP+ Q + L G+ I+ Q + N ++N N+ ++
Sbjct: 125 SPTPTQA--APPQTPNGQQRIELPGN--ISDALSQQQGQVNAA---SQNAQ---GNTSTL 174
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
PT P + P+ A+ P + P+ P K + P P
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQ------KPATKKPAVNHHKTATVAVPPATSGKP 228
Query: 808 IPEPKVAPSVPARPA 822
A ++ + PA
Sbjct: 229 KSGAASARALSSAPA 243
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 36.7 bits (85), Expect = 0.14
Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 3/132 (2%)
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
+ S + P P + + P S + P P S
Sbjct: 365 KGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGT- 423
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSD--LTYNTSTPSSRKASI 856
PP PP P PS + P ++ + + SS T + +A+
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483
Query: 857 TNPEAPRKYSKE 868
EAP KE
Sbjct: 484 NIKEAPTGTQKE 495
Score = 33.2 bits (76), Expect = 1.3
Identities = 30/143 (20%), Positives = 45/143 (31%), Gaps = 14/143 (9%)
Query: 695 DIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIP---TEP 751
D S P QH + + P + + S PS P T+P
Sbjct: 367 DDASGGRGPK-QHIKPVFTQPAAAPQPSAAAAASPSPS-----QSSAAAQPSAPQSATQP 420
Query: 752 PKLPPTIPAEPPKLPPSVPSE--PPKLPPSIPSEPPKIPPS-IPTEPPKIPPQRPPVPPI 808
PPT+ +PP P P P + P+ E KIP S + + P RP
Sbjct: 421 AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPST--LRPIQEKA 478
Query: 809 PEPKVAPSVPARPAPPKILDNKE 831
+ +I ++
Sbjct: 479 EQATGNIKEAPTGTQKEIFTEED 501
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 36.2 bits (83), Expect = 0.15
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 762 PPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPK--------IPPQRP-PVPPIP-EP 811
PP L V + PP P+ P P I P P +P + IP Q+P PVP P
Sbjct: 9 PPGLAGLVANVPPAAAPT-PQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTP 67
Query: 812 KVAPSVPARPAPPKI 826
V PA+PAP
Sbjct: 68 HVVQQAPAQPAPAAP 82
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 36.3 bits (84), Expect = 0.16
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 757 TIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP-IPEPKVAP 815
+ +LP P PP PP P EP + P EP + P IPE +
Sbjct: 258 VLLPRATRLPEPEPQPPPPPPPPEPPEPEEEPD----EPDQTDPDDGEETDQIPEELMFD 313
Query: 816 SVPARPAPPKIL 827
+V A P IL
Sbjct: 314 AVEA-DLPDNIL 324
Score = 35.9 bits (83), Expect = 0.18
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSE 783
E P P PP P P E P P + + IP E
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 35.6 bits (82), Expect = 0.30
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ------RPPVPP 807
LP P PP PP P EP + P EP + P E +IP + +P
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPD----EPDQTDPDDGEETDQIPEELMFDAVEADLPD 321
Score = 35.6 bits (82), Expect = 0.32
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
P P+ PP P P P P EP + P E +IP +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310
Score = 35.2 bits (81), Expect = 0.36
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTE 794
P+ P P PP P P E P P + + IP E
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 30.5 bits (69), Expect = 8.7
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 734 TRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSI 780
TR + + P P P P P EP + P E ++P +
Sbjct: 264 TRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 35.8 bits (83), Expect = 0.18
Identities = 13/60 (21%), Positives = 15/60 (25%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
P PA + + EPP P K P P P P P
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Score = 33.5 bits (77), Expect = 1.0
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 1/67 (1%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVP 818
PA P + +E + P PP+ P +PP P V
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP-AAAKPPEPAPAAKPPPTPVA 183
Query: 819 ARPAPPK 825
Sbjct: 184 RADPRET 190
Score = 33.5 bits (77), Expect = 1.0
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
P P AE + P PP+ P P + P + PP P
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTP--PAAAKPPEPAPAAKPPPTP 181
Score = 33.1 bits (76), Expect = 1.6
Identities = 15/66 (22%), Positives = 23/66 (34%)
Query: 766 PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
PP+ + + P K + PT P + P P+ AP+ P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183
Query: 826 ILDNKE 831
D +E
Sbjct: 184 RADPRE 189
Score = 32.7 bits (75), Expect = 1.6
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
PP + + P K P + P PP+ P P P P P K
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEK-PKAAAPTPE--PPAASKPTP--PAAAKPPEPAPAAKPP 178
Query: 815 PSVPARPAPP 824
P+ AR P
Sbjct: 179 PTPVARADPR 188
Score = 32.0 bits (73), Expect = 2.8
Identities = 9/56 (16%), Positives = 10/56 (17%)
Query: 769 VPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P + P P P P P P PP
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178
Score = 31.2 bits (71), Expect = 6.1
Identities = 11/54 (20%), Positives = 14/54 (25%)
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
PP P+ + + P PP P P A P K
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 34.2 bits (78), Expect = 0.21
Identities = 19/77 (24%), Positives = 26/77 (33%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
E ++ I EP P + P + +P K P + E P + P P
Sbjct: 59 EVTEVEVIIEKEPVPAVAVAPVPVAVVAPVVAPKPKKSQPVMSQEKTASPQKSVPAPSPK 118
Query: 810 EPKVAPSVPARPAPPKI 826
E K PAP K
Sbjct: 119 EKKKKKVAKVEPAPAKA 135
Score = 29.9 bits (67), Expect = 6.1
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP-PSIPTEPPKIPPQRPP- 804
I EP P + P V +P K P + E P S+P PK ++
Sbjct: 67 IEKEPVPAVAVAPVPVAVVAPVVAPKPKKSQPVMSQEKTASPQKSVPAPSPKEKKKKKVA 126
Query: 805 -VPPIPEPKVAPSVPARPAPP 824
V P P VA V A + P
Sbjct: 127 KVEPAPAKAVAVPVLASKSAP 147
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 35.5 bits (82), Expect = 0.22
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P +PP+ P E + + P E + P + P+ +P PP
Sbjct: 194 PLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
Query: 808 IPEPKVAPS-VPARPAPPKI 826
+P+P ++P P+ P PP++
Sbjct: 254 VPKPYISPDEYPSAPLPPEL 273
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTE----- 794
+ T + P E + P + P+ + P +PP P I +
Sbjct: 208 AAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPKPYISPDEYPSA 267
Query: 795 --PPKIPPQRPPVPPIPEPKV 813
PP++P P IP P +
Sbjct: 268 PLPPELPQLLQPSLVIPFPNL 288
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 35.2 bits (81), Expect = 0.22
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKE 831
+PP P + +PP P PP P P P PA P P K +
Sbjct: 143 QPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSP-----PPTPASPPPAKAPKSSH 197
Query: 832 PPI 834
PP+
Sbjct: 198 PPL 200
Score = 33.7 bits (77), Expect = 0.75
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
+P + +PP PA PP P+ + PP+ S PP P P K P
Sbjct: 148 APVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP 203
Score = 33.3 bits (76), Expect = 0.98
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 765 LPPSVPSEP--PKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPS 816
LP P P PP + PP PP+ P PP P P P AP
Sbjct: 141 LPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPK 194
Score = 31.7 bits (72), Expect = 3.2
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP--PVPP 807
+PP P + +PP P ++P P P + P+ PT P + P PP
Sbjct: 143 QPPPPAPVVMMQPP-PPHAMP--PASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPP 199
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPII 835
+ P +A + PAP EPP +
Sbjct: 200 LKSP-MAGTFYRSPAP------GEPPFV 220
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 35.2 bits (80), Expect = 0.27
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPK-----LPPSIPSEPPKIPPSIPTEP 795
++NS S+ T P L +P P + LPPS + K P P
Sbjct: 257 IDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPLPPSA-DDNIKECPLALKPP 315
Query: 796 PKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
P +PP + E +AP +P PP + DN + P
Sbjct: 316 PPLPPSVDD--NLKECLLAP-LPPSALPPSVDDNLKTP 350
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 35.1 bits (81), Expect = 0.28
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 726 EPNHVKSVTRNLMDDLENSPSIPTEP-PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP 784
H + V +D SP T P P++ L P+ P + + S
Sbjct: 216 AACHDEVVASKGGNDRGVSP--GTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSAS 273
Query: 785 PKIPP----SIPTEPPK--IPPQRPPVPPIPEPKVAPSVPARPAPP 824
P +P + + Q PP P+ P+ A PAP
Sbjct: 274 PAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPA 319
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 35.3 bits (81), Expect = 0.32
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 746 SIPTEPPKLPPTIPAEPPKL-------PPSVPS--EPPKLPPSIPSEPPKIPPSIPTEPP 796
S+P PP LP +P + P ++P+ P+ P PP E P
Sbjct: 92 SLPVHPPPLPSQPSLQPQQPGLKPFLQPTALPTNQATPQKNGPQPPMHLGQPPLQQAELP 151
Query: 797 KIPPQRPPVPPIPEPKVA 814
IPPQ P P+ ++
Sbjct: 152 MIPPQVAPSDKPPQTELP 169
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 35.1 bits (81), Expect = 0.35
Identities = 19/90 (21%), Positives = 22/90 (24%), Gaps = 7/90 (7%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI-----PPSIPTEPPKIPPQRPPVPPIP 809
A S S P P P PSI P P P V P
Sbjct: 9 RSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPP 68
Query: 810 EPKVAPSV--PARPAPPKILDNKEPPIIPR 837
P + A LD E ++
Sbjct: 69 AATTQTPQLNPLQRAAAAALDAVESALVSH 98
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.0 bits (81), Expect = 0.41
Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 22/245 (8%)
Query: 633 KDDLMDNKQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTP 692
+ + ++ K+ +R L ++++ +
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Query: 693 MRDIHSPSPTPDVQHQNLMGD---EDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPT 749
+ PD + N G +D S +KS N E++ +
Sbjct: 1203 SDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSS 1262
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
+ P ++ S PP PS + S P+ P K V
Sbjct: 1263 DDLSKEGKPKNAPKRVSAVQYSPPP---PSKRPDGESNGGSKPSSPTK-----KKVKKRL 1314
Query: 810 EPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKEN 869
E +A + + K K+ + + +++ SSR PRK ++
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKK------SKTRVKQASASQSSRLLR-----RPRKKKSDS 1363
Query: 870 VIDND 874
++D
Sbjct: 1364 SSEDD 1368
Score = 32.7 bits (75), Expect = 2.4
Identities = 32/206 (15%), Positives = 64/206 (31%), Gaps = 12/206 (5%)
Query: 3 KIPGLKKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKS-----DEWQ 57
K+K+K K + K ++ + + + K ++ S DE Q
Sbjct: 1172 PKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQ 1231
Query: 58 KFKALTAGVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQ 117
K K + V + K ++ + + F K + Q +
Sbjct: 1232 KTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKR 1291
Query: 118 E------STLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFE-EGQEPTLDEAAGTDKPAPR 170
+ + K RLE ++ E+ ++ + + R
Sbjct: 1292 PDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSR 1351
Query: 171 LEDLPLKFEEYDDDEEEEDSEVDEDI 196
L P K + E+++DSEVD+
Sbjct: 1352 LLRRPRKKKSDSSSEDDDDSEVDDSE 1377
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin. Amelogenins play a role in
biomineralisation. They seem to regulate the formation
of crystallites during the secretory stage of tooth
enamel development. thought to play a major role in the
structural organisation and mineralisation of developing
enamel. They are found in the extracellular matrix.
Mutations in X-chromosomal amelogenin can cause
Amelogenesis imperfecta.
Length = 174
Score = 33.7 bits (77), Expect = 0.44
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPP--SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
P IP P++P + PKL P + PP+ P + P +P PP +
Sbjct: 49 PIIPL-SPQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQ 107
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILDNKEPPI 834
P+ P P P PP P
Sbjct: 108 HPLQPTYGQNPQPQQPTHTQPPVQPQQPADPQ 139
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 34.8 bits (80), Expect = 0.47
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 742 ENSPSIPTEPPKLPPTIPAEP------PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
+ +P P+E + P + AE P P ++ K P + P + P
Sbjct: 237 DAAPVPPSEAAR-PKSADAETNAALKTPATAPKAAAKNAKAPEAQP--VSGTAAAEPAPK 293
Query: 796 PKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P E K P ARP
Sbjct: 294 EAAKAAAAAAKPALEDKPRPLGIARPGGA 322
Score = 31.3 bits (71), Expect = 4.6
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
D P + P P+E + + L P+ PK + + P+
Sbjct: 224 DGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAAL--KTPATAPK-AAAKNAKAPEAQ 280
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRD 838
P P PK A A A P + D P I R
Sbjct: 281 PVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 33.4 bits (76), Expect = 0.53
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L + +IP PP PP LP PP PP +P PP P +PP
Sbjct: 66 LPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPP--PPPLPGGAAVPPPPPLPGGPGVPP 123
Query: 801 QRPPVPPIPEPKVAPSVPARPAPP 824
PP P P P P PP
Sbjct: 124 PPPPFPGAPGIPPPPPGMGSPPPP 147
Score = 32.2 bits (73), Expect = 1.2
Identities = 29/76 (38%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 751 PPKLP--PTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
PP LP IP PP PP LP PP P PP PP P V I
Sbjct: 3 PPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPP--PPPLPGVAGI 60
Query: 809 PEPKVAPSVPARPAPP 824
P P P A P PP
Sbjct: 61 PPPPPLPGATAIPPPP 76
Score = 32.2 bits (73), Expect = 1.2
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L IP PP T PP LP + PP P PP PP +P PP
Sbjct: 54 LPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPP-PPPLPGGAAVPPP 112
Query: 801 QRPPVPP----IPEPKVAPSVPARPAPPKILDNKEPP 833
PP+P P P P P P PP + + PP
Sbjct: 113 --PPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPP 147
Score = 31.1 bits (70), Expect = 2.6
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVP-SEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
L IP PP PP LP PP LP PP P + PP P
Sbjct: 6 LPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPP--P 63
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPP 824
P P IP P P P PP
Sbjct: 64 PPLPGATAIPPPPPLPGAAGIPPPP 88
Score = 29.9 bits (67), Expect = 7.2
Identities = 31/95 (32%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTE-----PPKIPPQ 801
IP PP T PP LP PP P + PP PP +P PP +P
Sbjct: 24 IPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPP--PPPLPGATAIPPPPPLPGA 81
Query: 802 RPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
PP P P A P P P PP +P
Sbjct: 82 AGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLP 116
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in
ubiquitously expressed adaptor protein (AP) complex AP-3.
AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are four
AP complexes, AP-1, AP-2, AP-3, and AP-4, described in
various eukaryotic organisms. Each AP complex consists of
four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3A subunit encoded by ap3m1gene. Mu3A is ubiquitously
expressed in all mammalian tissues and cells. It appears
to be localized to the trans-Golgi network (TGN) and/or
endosomes and participates in trafficking to the
vacuole/lysosome in yeast, flies, and mammals. Unlike
AP-1 and AP-2, which function in conjunction with
clathrin which is a scaffolding protein participating in
the formation of coated vesicles, the nature of the outer
shell of ubiquitous AP-3 containing coats remains to be
elucidated. Membrane-anchored cargo molecules interact
with adaptors through short sorting signals in their
cytosolic segments. Tyrosine-based endocytotic signals
are one of the most important sorting signals. They are
of the form Y-X-X-Phi, where Y is tyrosine, X is any
amino acid and Phi is a bulky hydrophobic residue that
can be Leu, Ile, Met, Phe, or Val. These kinds of sorting
signals can be recognized by the C-terminal domain of
AP-3 mu3A subunit, also known as Y-X-X-Phi signal-binding
domain that contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding.
Length = 254
Score = 33.9 bits (77), Expect = 0.56
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1472 LEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNK 1531
L+ V FH C++ +E R + F PPD + L+ +RV +P+ +K ++ N
Sbjct: 64 LDDVSFHPCIRFKRWESERVLSFIPPDGNF-RLISYRVSSQNLVAIPVYVKHLISFKENS 122
Query: 1532 VELRADILV 1540
R DI +
Sbjct: 123 SCGRFDITI 131
>gnl|CDD|131880 TIGR02833, spore_III_AB, stage III sporulation protein AB. A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is designated stage III
sporulation protein AB [Cellular processes, Sporulation
and germination].
Length = 170
Score = 33.4 bits (77), Expect = 0.56
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 244 KERKRKLISLGCAVDVLAGKVDKPVSPLPEHHESTPRRRPKPVDLLLGSFDEQSPRAAEL 303
KER R+L L A+ L ++ +PLPE + + PKPV+LL S E+ E
Sbjct: 24 KERPRQLRQLINALQSLEAEIVYGHTPLPEAFKKIALKSPKPVNLLFESASERLKE-GEG 82
Query: 304 ENVSNTLEEPVKTLLDEDN 322
V ++ + + +
Sbjct: 83 LTVYEAWKKALNEVWKQTA 101
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 34.2 bits (78), Expect = 0.57
Identities = 21/88 (23%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 744 SPSIPTEPPKLP-----PTIPAEPPKLPPSVPSEP-PKLPPSIPSEPPKIPPSIPTEPPK 797
SP+ P + P P + P P PK P P
Sbjct: 274 SPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDAD 333
Query: 798 IPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P P + I P P PA PA P+
Sbjct: 334 RPEGWPSLEAITFP---PPTPATPAVPR 358
Score = 31.5 bits (71), Expect = 4.6
Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 746 SIPTEPPKLPPT-IPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT------EPPKI 798
S EPP P PA P P EP + P P
Sbjct: 261 SKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGE 320
Query: 799 PPQRP--PVPPIPEPKVAPSVPARPAPPK 825
P P P P P+ PS+ A PP
Sbjct: 321 PKPGPPRPAPDADRPEGWPSLEAITFPPP 349
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 34.7 bits (79), Expect = 0.65
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 739 DDLENSPSIPT-EPPKLPPTI---PAEPPKLP-PSVPSEPPKLPPSIPSEPPKIPPSIPT 793
+ + +P + + + P PT+ P P+ P + P P P + + P
Sbjct: 338 EPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPL 397
Query: 794 EPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEP 832
+ P P Q P +P P P P P
Sbjct: 398 QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP 436
Score = 33.5 bits (76), Expect = 1.3
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 738 MDDLENSP------SIPTEPPKLPPTIPAEPPKLPPSVP-----SEPPKLPPSIPSEPPK 786
+DD E SP P EP P P + P+ P + + P P +P +
Sbjct: 724 LDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ 783
Query: 787 -IPPSIPTEPPKIPPQRPPVPPIPEPKVAP----SVPARP-APPKILDNKEPPIIPRDSS 840
+ P + P+ P P P+ VAP P +P AP + P+ P+
Sbjct: 784 PVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
Query: 841 DLTY 844
L +
Sbjct: 844 TLLH 847
Score = 31.2 bits (70), Expect = 5.9
Identities = 39/263 (14%), Positives = 62/263 (23%), Gaps = 56/263 (21%)
Query: 643 QTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPT 702
Q P PVI P+ E + L + + P P + + P
Sbjct: 361 QPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPY 420
Query: 703 PDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEP 762
+ P Q V+ + + T +
Sbjct: 421 YAPAPEQPAQQPYYAPAPEQPVAGN--------------------AWQAEEQQSTFAPQS 460
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP---------------- 806
+P P P + P + +P P
Sbjct: 461 TYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARER 520
Query: 807 --------PIPEPKVAPSVPARPAPPKILDNKEPPIIPRDS--------SDLTYNTSTPS 850
PIPEP P P + + PP+ + T T +
Sbjct: 521 EQLAAWYQPIPEPVKEP-EPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAA 579
Query: 851 SRKA---SITNPEAPRKYSKENV 870
+ A S+ N PR KE +
Sbjct: 580 TVAAPVFSLANSGGPRPQVKEGI 602
Score = 31.2 bits (70), Expect = 7.4
Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 759 PAEPPKLPPSVPS-EPPKLPPSIPSEP---PKIP-PSIPTEPPKIPPQRPPVPPIPEPKV 813
P EP P V S + P P++ +P P+ P I P P Q +P V
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQ----SQYAQPAV 391
Query: 814 APSVP-ARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
+ P +P P+ P P+ + PE P
Sbjct: 392 QYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 34.5 bits (79), Expect = 0.66
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 730 VKSVTRNLMDDLENSPSIPT------EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSE 783
VKSV + D + I T P P A+P P+ P P+
Sbjct: 169 VKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKA 228
Query: 784 PPKIPPSIPTE-PPKIPPQRPPV 805
P T+ P K+ P V
Sbjct: 229 QAPAPQQAGTQNPAKVDHAAPAV 251
Score = 32.2 bits (73), Expect = 3.3
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSV 817
+ P P ++P P+ P P+ P Q P AP+V
Sbjct: 194 STPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAV 251
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 33.5 bits (77), Expect = 0.70
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 178 FEEYDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKV 237
FEE +DDEE E E +E+ + D +DD P+ D +K
Sbjct: 34 FEEEEDDEEFEIEEEEEEEEVDSDFD----------------DSEDDEPESDDEEEGEKE 77
Query: 238 IKPESEKERKRKLISLGCAVDVLAGKVDKPVSPLPEHHESTPRRRPK 284
++ E E+ +K+K + + K K + + PR + K
Sbjct: 78 LQRE-ERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKK 123
Score = 30.4 bits (69), Expect = 6.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 16/55 (29%)
Query: 141 FEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVDED 195
FEE +DDEEFE +E +E D ++DD E++E DE+
Sbjct: 34 FEEEEDDEEFEIEEEEEEEE-----------VD-----SDFDDSEDDEPESDDEE 72
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 34.5 bits (79), Expect = 0.76
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 24 FDAEELAKYRREHQAKEEEAGAEASS--EGKSDEWQKFKALTAGVDSILKK------THD 75
DAEEL +E +A E S+ E + Q+ + L + + S++++ +
Sbjct: 550 LDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQN 609
Query: 76 DLEQLKQTS 84
LEQL + S
Sbjct: 610 ALEQLSEQS 618
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 33.7 bits (77), Expect = 0.78
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 795 PPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSR-- 852
P +PP P +P PS + P + +E PI S D +
Sbjct: 77 PIDVPPDPPAAQEAVQPTAPPSAQSEPERNE-PRPEETPIFAYSSGDQGGSKRAGHGDTD 135
Query: 853 KASITNPEAPRKYSKENVIDNDVLIQ 878
+ N E + E +ND+ I+
Sbjct: 136 RRQDDNREDNSLPAGEVSAENDLSIR 161
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 34.4 bits (78), Expect = 0.79
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 776 LPPSIPSEPPKIPPSIPTEPP-KIPPQRPPVPPIPEPKVAPSVPARPAPP 824
LP S+P P+ P PP I P+ PP PP EP+ P P P P
Sbjct: 824 LPDSLPPAVPETDRDNPLLPPCPITPEGPPCPPREEPQ-QPQEPQEPQSP 872
Score = 32.9 bits (74), Expect = 2.0
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 762 PPKLPPSVPS---EPPKLPPSIPSEPPKIPPSIPTEPPKIP--PQRPPVPPIPEPKVAPS 816
P LPP+VP + P LPP + P+ PP P E P+ P PQ P P ++ +
Sbjct: 825 PDSLPPAVPETDRDNPLLPPCPIT--PEGPPCPPREEPQQPQEPQEPQSPSFHISEIGEA 882
Query: 817 V-PARPAPPKIL 827
+ + P P IL
Sbjct: 883 LFHSTPVSPTIL 894
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 34.0 bits (77), Expect = 0.83
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
+ P P PP + PK+ + +E PK P S P PPK P PPK +
Sbjct: 179 QKIPETTDPKPS-PPAEDKQKPKVESAPVAEKPKAPSSPP--PPKQSAKEPQLPPKERER 235
Query: 802 RPPV 805
R P+
Sbjct: 236 RVPM 239
Score = 32.8 bits (74), Expect = 2.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 784 PPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA--PSVPARPAPPKILDNKEPPIIPRD 838
P + P P P + P + VA P P+ P PPK KEP + P++
Sbjct: 177 PSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPK-QSAKEPQLPPKE 232
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 33.6 bits (77), Expect = 0.84
Identities = 17/86 (19%), Positives = 26/86 (30%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
S + ++ + + P P P PP P PP T + +R
Sbjct: 152 TSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKER 211
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILD 828
+ S P P P +LD
Sbjct: 212 KGQRSAAGKTLVLSKPKSPEFPNMLD 237
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 33.5 bits (77), Expect = 0.99
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
E + S+ P L PP S PS P S+ PP PK
Sbjct: 300 PEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERPLALSPK--R 357
Query: 801 QRPPVPPIPEPK 812
+R + K
Sbjct: 358 KREGDKKQKKKK 369
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 33.5 bits (77), Expect = 1.0
Identities = 22/155 (14%), Positives = 40/155 (25%), Gaps = 17/155 (10%)
Query: 728 NHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPS-EPPK 786
NHV+ R + ++P + P + + K PP P + S
Sbjct: 242 NHVRRPPRPGHLLVVSTPELVLPPEPDEQSSERQTFKTPPQ-PESSSDAENGLVSLVDED 300
Query: 787 IPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNT 846
+ + PP A P +P + +
Sbjct: 301 DKEEVSRDSE------SDAPPDDTD--LTRALAEYEAA-------APEVPDAARTVLQGK 345
Query: 847 STPSSRKASITNPEAPRKYSKENVIDNDVLIQNAI 881
PS P+ Y K + + L ++
Sbjct: 346 EQPSPDPVESPGPDLTPGYPKSDEVAGTYLGGGSV 380
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 33.6 bits (77), Expect = 1.1
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPP-KLPPSVPSEPPKLPPSIPS-----EPPKIPPSIPTE 794
LE PP E P + P+ P P+ + I S
Sbjct: 74 LEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAV-- 131
Query: 795 PPKIPPQRPPVPPIPEPKVAPSVPARPAPPKI 826
P R I + AP+ +PAP
Sbjct: 132 PGTGVTGRVTKEDIIKKTEAPASAQQPAPAAA 163
Score = 31.2 bits (71), Expect = 4.7
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSK 867
+ E A + P + + KE ++ T + PS A R+ +K
Sbjct: 74 LEEGNDATAAPPAKSGEE----KEETPAASAAAAPTAAANRPSL-------SPAARRLAK 122
Query: 868 ENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNE 915
E+ ID + + R + +D++ ++ Q+ A+ ++ +N
Sbjct: 123 EHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANF 170
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 33.4 bits (77), Expect = 1.1
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 767 PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPA 819
+ P + + P + P P P E P +PA
Sbjct: 85 SDAGAAPAAAAEAAAAAPA--AAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 32.6 bits (75), Expect = 2.0
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
P AE P+ + + P P + P IP
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 32.6 bits (75), Expect = 2.1
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 789 PSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPI 834
+ P + P K A PA PA P +P I
Sbjct: 88 GAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDI 133
Score = 32.6 bits (75), Expect = 2.4
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPE 810
++ P + P + + K P P + P IP
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 32.2 bits (74), Expect = 2.5
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP 788
D +P+ E P A + P P + + P IP
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 30.7 bits (70), Expect = 9.4
Identities = 6/49 (12%), Positives = 8/49 (16%)
Query: 778 PSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKI 826
+ P + P A A P I
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDI 133
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 33.7 bits (77), Expect = 1.1
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 785 PKIPPSIPTEPPKIPPQRPPVPPIPEPK-VAPSVPARPAPPKILDNKEPPIIPRDSSDLT 843
K P+ P P P P P VA + PA P P P +SD
Sbjct: 7 AKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGP-------RPDDEPFKASDAL 59
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 33.4 bits (76), Expect = 1.2
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 143 EYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEE--EEDSEVDEDIFDTA 200
D D E E E D A ++ + +E D+ E+DS+ T+
Sbjct: 424 PADQDVEAEAHDEFDQDPGAPAHADRADSDEDDMDEQESGDERADGEDDSDSSYSYSTTS 483
Query: 201 FVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKVIKPESEKER 246
D + D DS IE DDG V + I+ E E+ER
Sbjct: 484 SEDESDSADDSWGDESDSGIEHDDGG-------VGQAIEEEEEEER 522
>gnl|CDD|147296 pfam05038, Cytochrom_B558a, Cytochrome Cytochrome b558
alpha-subunit. Cytochrome b-245 light chain (p22-phox)
is one of the key electron transfer elements of the
NADPH oxidase in phagocytes.
Length = 186
Score = 32.6 bits (74), Expect = 1.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 778 PSIPSEPPKIPPSI-PTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDN 829
P +P + + P +PP PP RPP +P V A P + DN
Sbjct: 132 PILPRKKERPPVGGTIKQPPSNPPPRPPAEARKKPLEELGVSAYVNPIPVTDN 184
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 33.5 bits (76), Expect = 1.2
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPS-------EPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
IP PP+ P P LP + S PK + P P++ +
Sbjct: 172 IPPNPPREAPA-----PGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQ 226
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPP 824
Q P P + P PA+ P
Sbjct: 227 QQPQQQPVQPAQQPTPQNPAQQPPQ 251
Score = 30.8 bits (69), Expect = 7.1
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPK--LPPSIPSE--------PPKIPPSIPTE 794
P+ T P I A +PP+ P E P LP + S P
Sbjct: 152 PAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQN 211
Query: 795 PPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
P + P + P + V P ++PP
Sbjct: 212 PAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPP 250
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 33.3 bits (76), Expect = 1.2
Identities = 30/146 (20%), Positives = 45/146 (30%), Gaps = 11/146 (7%)
Query: 673 EATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKS 732
+ T +L R +A SP+ P +V Q L G E P ++
Sbjct: 248 QDTVLYLRRLNAVYLNSPSKRVIF----PRVEVYCQAL-GKECPQRSQPSLQDGQASLEE 302
Query: 733 VTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIP 792
+ + P L P + A V S P S P+ P + PS+P
Sbjct: 303 SWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAEWVVES-----PVSSPASPLESSPSLP 357
Query: 793 TEPPKIPPQRPPVPPIPEPKVAPSVP 818
+ P P P P +
Sbjct: 358 GSLTDLSPASLPAVHSL-PSSTPGLS 382
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 33.5 bits (77), Expect = 1.2
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPK---------IPPSIP 792
E + TI + +PP +EP P SIP P I S
Sbjct: 239 EQDGVEEASGCGVQGTIESSTSVIPPGRAAEP--APVSIPVAAPGEGATPAAAQIELSAG 296
Query: 793 TEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKI 826
P I P PV P V PS P +
Sbjct: 297 VLPNAISPAT-PVRPASNG-VTPSQAPSAEPQLV 328
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 30.9 bits (70), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 8 KKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDE 55
KKK+K KKNK KEE + EE K E KE E + + ++
Sbjct: 22 KKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEED 69
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 33.3 bits (76), Expect = 1.3
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 775 KLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
+L SIP+ P P P P PEP+ + P
Sbjct: 382 RLDMSIPANLLHNAPQ-AAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEP 430
Score = 32.2 bits (73), Expect = 3.0
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 753 KLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPP 796
+L +IPA P P P +P P + P
Sbjct: 382 RLDMSIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTP 425
Score = 31.0 bits (70), Expect = 6.1
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 764 KLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP-PKIPPQRPPVPPIPEPKVA 814
+L S+P+ P P P +P P+ P P P EP A
Sbjct: 382 RLDMSIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAA 433
Score = 31.0 bits (70), Expect = 7.5
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 746 SIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPP 785
SIP P P P +P P + + P
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTP 425
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 33.2 bits (76), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 230 DTSIVDKVIKPE----SEKERKRKLISLGCAVDVLAG 262
T IV + +KP+ SE K+I LG A D+ G
Sbjct: 273 STGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVG 309
>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486). This
family is made up of members from various Burkholderia
spp. The function is unknown.
Length = 245
Score = 32.6 bits (74), Expect = 1.4
Identities = 31/157 (19%), Positives = 43/157 (27%), Gaps = 14/157 (8%)
Query: 640 KQDQTPRRPPPPRPVI-----PPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMR 694
P P P R P + ++ ++ HAAR + P
Sbjct: 13 TDVLVPGHPVPARSSSADAAGPHDDAAEPVLTDQIVPGAEQAASAAPVHAAREATADPEF 72
Query: 695 DIHSPSPTPDVQHQNLMGDEDITPIFP----QTVSE--PNHVKSVTRNLMDDLENSPSIP 748
P PTP V L GD D P P V+E + L D +P
Sbjct: 73 VAVEPVPTPHVPAVALPGDTD-APAEPGAAPHVVAERAAAMQAPLPSALAADDPQAPPAG 131
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPP 785
A P + + PP + S
Sbjct: 132 ATAADAGD--AAPDATPPAAGDASPPAAAQAAASAAA 166
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 33.0 bits (75), Expect = 1.5
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 743 NSPSIPT-EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
+ + + P P P +P S+P+ P + P
Sbjct: 357 SRVLAAAAKVAVIAAPQTHTGPA-DRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGL 415
Query: 802 RPPVPPIPEPKVAPSVPARPAPP 824
P P P P PP
Sbjct: 416 VSPYNPQSPGTSYGPEPVGPVPP 438
Score = 31.1 bits (70), Expect = 6.7
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 746 SIPTEPPKLPPTIPAE-PPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P P +P ++PA P P VP P P S EP P +P
Sbjct: 382 QRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441
Query: 805 VPPIPEPKVAPSVPA 819
P + +A V
Sbjct: 442 NPYVMPISMANMVYP 456
Score = 30.7 bits (69), Expect = 9.6
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSE--PPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA-- 814
P+ V + P++ P+ P IP P + P P P+
Sbjct: 356 PSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVP---ARSPMTAYPPVPQFCGD 412
Query: 815 --PSVPARPAPPKILDNKEP 832
P P P EP
Sbjct: 413 PGLVSPYNPQSPGTSYGPEP 432
Score = 30.7 bits (69), Expect = 9.7
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 741 LENSPSIPTEPPKLPPTIPAE--PPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
L + + T PA+ P+ P +P P S + P +P
Sbjct: 360 LAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVP--ARSPMTAYPPVPQFCGDPGLVS 417
Query: 799 PPQ-RPPVPPIPEPKVAPSVPARPAP---PKILDNKEPPIIPRDSS 840
P + P V P P P P + N P P++
Sbjct: 418 PYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHG 463
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.5 bits (71), Expect = 1.5
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 110 WTEFEEGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAP 169
WTE G+ AA T E +E D DE E DE TD+
Sbjct: 52 WTE--AGRAEKGPAAAATAAAEAAEEAEAADADE-DADEAAEADAADEADEEEETDEAVD 108
Query: 170 RLEDLPLKFEEYDDDEEEEDSE 191
D E D+EE+E++E
Sbjct: 109 ETADEADAEAEEADEEEDEEAE 130
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 32.5 bits (74), Expect = 1.5
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 748 PTEPPKLPPT-IPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP 806
PT+ + P E P+ ++ K + + P +P P + PV
Sbjct: 111 PTQLGEQPEQARIEEQPR------TQSQKAQSQATTVQTQ-----PVKPKPRPEKPQPVA 159
Query: 807 PIP--EPKVAPSVPARPAPPKILDNKE 831
P P EP PPK
Sbjct: 160 PAPAPEPVEKAPKAEAAPPPKPKAEDA 186
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 33.3 bits (76), Expect = 1.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPK 786
P PA P +PP ++PP PP P PP
Sbjct: 910 AASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948
Score = 32.1 bits (73), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
A P + P PP+ P +PP T+PP PP+ P VPP
Sbjct: 903 ATAPGGDAASAPPPGAGPPA---PPQAVPPPRTTQPPAAPPRGPDVPP 947
Score = 31.8 bits (72), Expect = 4.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPK 797
A P P+ P +PP ++PP PP P PP
Sbjct: 910 AASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 33.1 bits (75), Expect = 1.7
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
PP P A PP P P P + PP P PT P+ PPQ PP P
Sbjct: 735 RPPAAAPG-RARPPAAAPGRARPPAAAPG--RARPPAAAPGAPT--PQPPPQAPPAP-QQ 788
Query: 810 EPKVAPSVPARPAPP 824
P+ AP+ P
Sbjct: 789 RPRGAPTPQPPPQAG 803
Score = 32.7 bits (74), Expect = 2.3
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 770 PSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
+ + P + PP P PT P + P P+P P+V P + +P
Sbjct: 443 ATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVILHQP 494
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 33.0 bits (75), Expect = 1.8
Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 11/193 (5%)
Query: 12 KGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSILK 71
+ K+ HK E E + E + E + E+E E EG+ E + + +
Sbjct: 700 EAKEADHKGETEAEEVE-HEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Query: 72 KTHDDLEQLKQTSYFQRKPPGPSEYGSETS---KGNTKEQAWTEFEEGQESTLDEAAGTD 128
+ E +T ++ E + KG+ + E EG+ ++
Sbjct: 759 GDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVE-HEGETEAGEKDEHEG 817
Query: 129 KPAPRLEDLPLKFEE------YDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYD 182
+ + +D +K E ++ E ++ ++ + E+ + EE +
Sbjct: 818 QSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEE 877
Query: 183 DDEEEEDSEVDED 195
++EEEE+ E +E+
Sbjct: 878 EEEEEEEEEEEEN 890
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 32.8 bits (75), Expect = 1.8
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVA 814
+ + PP P + PS PP+ P+ P +P P P
Sbjct: 539 WQRRRGPPYAEPPEPVSADTPPSLQLDDPPTFPSALPLPHASGLSLPGTPPPNYN 593
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 33.1 bits (75), Expect = 1.9
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
T+P + T P L + + P P S S PPSIP+
Sbjct: 90 ATKPSRRNKTTQCRPTSLALATAATMPATPSSGKSPKVSSPPSIPSLS 137
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 33.0 bits (75), Expect = 2.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 798 IPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDL 842
+PP PP PP P PS P P PP + K D+
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDI 48
Score = 33.0 bits (75), Expect = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 784 PPKIPPSIPTEPPKIPPQRPPVPPIP 809
PP PP P P PP +PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.5 bits (71), Expect = 5.3
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 776 LPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
LPP P PP PP EPP PP PP PP
Sbjct: 4 LPPGNPPPPPP-PPGF--EPPSQPP--PPPPP 30
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 32.9 bits (75), Expect = 2.0
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP--PKIPPSIPTEPPKIPPQRPPVPPIP 809
P A P P + +L + S P + P RP PP P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405
Query: 810 EPKVAPSVPARPAPP 824
EP + P AP
Sbjct: 406 EPARSAEAPPLVAPA 420
Score = 32.1 bits (73), Expect = 3.4
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L +PS P PA+ + + E L + + +P P+ P
Sbjct: 342 LGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPR--P 399
Query: 801 QRPPVPPIPEPKVAPSVPARPAPP 824
+ PP P AP + A A P
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAP 423
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 32.8 bits (75), Expect = 2.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEP-PKLPPSIPSEPPKIPPSIPTEPPKIP 799
+ P P + P++P S P P P P PP PP+ P P ++
Sbjct: 82 TGGLIEPASPLKVPEMPTGPASAPLPIARPDNPDAPPT-PPANPGNPGQVN 131
Score = 32.1 bits (73), Expect = 2.9
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 761 EPPKLPPSVPSEPPKLPPSIPSEP-PKIPPSIPTEPPKIPPQRPPVPPIPE 810
+ P+ P + P++P S P P P P PP PP P P
Sbjct: 82 TGGLIEPASPLKVPEMPTGPASAPLPIARPDNPDAPPT-PPANPGNPGQVN 131
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 32.4 bits (74), Expect = 2.0
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 10/101 (9%)
Query: 766 PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
+ P ++ P +PP P P P+ A+ P +
Sbjct: 48 GEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPD--QQVEEAKDQPRR 105
Query: 826 ILDNKEPPIIPRDSSDL----TYNTSTPSSRKASITNPEAP 862
+ S ++ + AP
Sbjct: 106 ----LRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAP 142
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 30.5 bits (69), Expect = 2.3
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 123 EAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYD 182
EAAG + R++ L EE + DE ++ A A E K EE
Sbjct: 27 EAAGIEVDEARVKALVAALEEVNIDEAIKKAAVAAAAAAPAAAAAAAAEEKAEEKEEEKK 86
Query: 183 DDEEEEDSE 191
+EE+E+ E
Sbjct: 87 KEEEKEEEE 95
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 32.0 bits (72), Expect = 2.3
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPK-LPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPK 812
+P + + P + + PP + +PS P + P+
Sbjct: 96 VPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAH 155
Query: 813 VAPSVPARPAPPKILDNKEPPIIPRDSSDL 842
SVP R A N+ P+ SS L
Sbjct: 156 NPESVPTRAARETTEANRPTATPPQSSSAL 185
>gnl|CDD|227478 COG5149, TOA1, Transcription initiation factor IIA, large chain
[Transcription].
Length = 293
Score = 32.0 bits (72), Expect = 2.4
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 100 TSKGNTKEQAWTEFEEGQESTLDEAAGTDKPAPRLEDL--PLKFEE--YDDDEEFEEGQE 155
S N EQ E G +S + TD ++D E D ++ E
Sbjct: 145 ISLPNRLEQVEDELSIG-KSAITTLRNTDWRERLIDDTQSEWDGERMRRRDGKQGIHQYE 203
Query: 156 PTLDEAAGTDKPAPRLEDLPLKFEEYDD-DEEEEDSEVDEDIFDTAFV 202
+ A K P F + DD D + DSE++ T +
Sbjct: 204 RLSEGPAHAFKGKPTTAKDEGMFSDLDDSDVDSGDSEIEGTKGSTNCM 251
>gnl|CDD|185176 PRK15273, PRK15273, putative fimbrial outer membrane usher protein
SteB; Provisional.
Length = 881
Score = 32.4 bits (73), Expect = 2.5
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 771 SEPPKLPPSIPSEPPKIPPSI-PTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDN 829
S PP P + + +P + +PP P + P+P P + +PA P
Sbjct: 803 SLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTT 862
Query: 830 KEPPI 834
+ PPI
Sbjct: 863 QTPPI 867
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 32.3 bits (73), Expect = 2.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 760 AEPPKLPPS-----VPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
+P KL PS VPS+P K+ P+ PS P++P S Q P P
Sbjct: 624 RKPAKLGPSLVITNVPSDPTKVTPTQPSNLPQVPTSGQGNGTAGGEQPPSAPN 676
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 32.6 bits (74), Expect = 2.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 774 PKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P LP + E + P+ + P P +P PE P VP A P
Sbjct: 314 PWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATP 364
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor
(transactivator). This family includes EBV BRLF1 and
similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 32.4 bits (74), Expect = 2.6
Identities = 46/316 (14%), Positives = 81/316 (25%), Gaps = 42/316 (13%)
Query: 916 VAPDVFSQQITSTNIIENYTTDSSPFIEDHATAVNHEATAEPIQHTADQFMNLFGTSIGK 975
V P+ +I+ ++ D S +++ + E A P+ QF F
Sbjct: 170 VLPEPLLLEISEPGLLAASDADLSELLQNPEEIL--ETRASPL----SQFHG-FTPHPSL 222
Query: 976 NEPETAFMNQDDTFGIQPAATDFPEQTISQDTLFSQPPTEPQKENVFAQNDDLFDAFSAK 1035
+P++ ++ P+Q+ S ++ P++E + + S
Sbjct: 223 PQPQSPL--------KPSPSSARPQQSESFSDVWPASTQSPREET----SAEPLAPASPS 270
Query: 1036 FESVKINEEKSSAFDPFGGTSAFGDAGTL---SSEQPSDVEGFGT------------DDG 1080
+E+ A G + S +PS T
Sbjct: 271 SRRPSTAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAK 330
Query: 1081 FDAFLAMGPPPTPQCTP---TPTPAKQRKTSADSDEDSDFNVFIRPQNFENNLQPNTALV 1137
D M P R P P+ A
Sbjct: 331 RDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSGAAH 390
Query: 1138 PPSLAPPPKSPAVPASQDSSPRFNPFDKGDVFAAPKENIFTQPDELNLTM--QRTDSQET 1195
P+ PP V + + P G + P + L Q +
Sbjct: 391 QPASLLPPAV--VQQQLEDASDKQPPTPGSSLVPQPDEQELGPSVMALLDRDQGILALIL 448
Query: 1196 PPTPLFDEDVSQPLED 1211
P P D+S P
Sbjct: 449 APIPG-LYDLSGPPNL 463
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 32.6 bits (74), Expect = 2.6
Identities = 61/330 (18%), Positives = 102/330 (30%), Gaps = 58/330 (17%)
Query: 630 ASSKDDLMDNKQDQTPRRP---PPPRPVIPPSKETKDLILTVTG---------HMEATSS 677
+SS+D + ++ P R P P+ + + +G E++SS
Sbjct: 363 SSSEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSS 422
Query: 678 HLDRCHAARTPSPTPMRDIHSPSPTPDVQHQN-----------LMGDEDITPIFPQTVSE 726
+ RT SP P P T Q N P Q + +
Sbjct: 423 DSEENEPPRTASPEP-----EPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEK 477
Query: 727 PNHVKSVTRNLMDDLENSP----SIPTEPPKLPPTIP------------AEPPKLPPSVP 770
VKS + + P S P+ P +E P +V
Sbjct: 478 EGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVG 537
Query: 771 SEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNK 830
+ PK P + + +EP +P P PK A +P+P K
Sbjct: 538 KKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSP-----RK 592
Query: 831 EP-PIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKENVIDNDVLIQNAINSRKSSQD 889
EP +P + Y + + K+ E S + D + + S +++
Sbjct: 593 EPKSSVPPAAEKRKYKSPSKIVPKS----REFIETDSSSSDSPEDESLPPSSQSPGNTE- 647
Query: 890 VVTSRKSSQDIQRITSASQSRKASNEVAPD 919
S K S R S + N+++ D
Sbjct: 648 ---SSKESCASLRTPVCRSSVGSQNDLSKD 674
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 32.4 bits (74), Expect = 2.7
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 744 SPSIP-TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
SPSIP PP P+ +P P S P PS+PT P PP
Sbjct: 392 SPSIPLPHPPSALPSHVGASSSKHHRLPPSVL--PGPRLSSPS-PSPSLPTRRPGTPPPP 448
Query: 803 PPVPPIPEP 811
P P
Sbjct: 449 ASPPTPSPP 457
Score = 32.4 bits (74), Expect = 2.7
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIP-SEPPKIPPSIPTEPPK----IPPQRPPVPPI 808
L P P + LP + + + PSIP PP PS +PP P P +
Sbjct: 369 LLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGPRL 428
Query: 809 PEPKVAPSVPARPAPPKILDNKEP 832
P +PS+P R P
Sbjct: 429 SSPSPSPSLPTRRPGTPPPPASPP 452
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 31.0 bits (70), Expect = 2.7
Identities = 14/52 (26%), Positives = 15/52 (28%)
Query: 776 LPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKIL 827
L P P P P P P P +V P P KIL
Sbjct: 45 LSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMPGKIL 96
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 31.6 bits (72), Expect = 2.9
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 114 EEGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLED 173
+ ++ A D D + +E DDDEE E ++ ++A +D D
Sbjct: 68 RAHKSKKENKLAIEDADKSTNLDASNEGDE-DDDEEDEIKRKRIEEDARNSD------AD 120
Query: 174 LPLKFEEYDDDEEEEDSEVDED 195
+ D +++ D + ED
Sbjct: 121 DSDSSSDSDSSDDDSDDDDSED 142
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.1 bits (73), Expect = 3.0
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 8 KKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVD 67
KK K K E + A AK A E +A AE ++ K+ E A VD
Sbjct: 201 KKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVD 260
Query: 68 SIL 70
+
Sbjct: 261 DLF 263
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 32.4 bits (74), Expect = 3.1
Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 20/149 (13%)
Query: 260 LAGKVDKPVSPLPEHHESTPRRRPKPVDLLLGSFDEQSPRAAELENVSNTLEEPVKTLLD 319
L K+ K PL + K L + E+E +LE+ + L +
Sbjct: 43 LESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEE 102
Query: 320 EDNENLP-DSPVDVA-DTLSILQKINE------------------TVQAAQLPQVEKKAT 359
N S +D + LS L ++ + +L E++
Sbjct: 103 WLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELW 162
Query: 360 PILEKFGIDELIDDELIDGETDEFAALAT 388
+ I++ L D + F
Sbjct: 163 RACRGYIRQAEIEEPLEDPKKTVFIIFFV 191
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 31.9 bits (73), Expect = 3.1
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 1066 SEQPSDVEGFGTDDGFDAFLAMGPPPTPQCTPTPTPAKQRKTSADSDEDSDFNVFIRPQN 1125
S+ T D P TPT + T+ D N + P
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214
Query: 1126 FENNLQPNTALVPPSLAPPPKSPAVPASQ 1154
N+ P + A P + +P Q
Sbjct: 215 --ANVDTAATPAPAAPATPDGAAPLPTDQ 241
Score = 31.5 bits (72), Expect = 3.5
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 714 EDITPIFPQTVSE--PNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPS 771
E+IT + Q+ +E N +SV L P+ P + P +
Sbjct: 141 EEITTMADQSSAELSQNSGQSVP--LDTSTTTDPATTPAPA---APVDTTPTNSQTPAVA 195
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P P P + + PS P P+ A + P
Sbjct: 196 TAPA-PAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 31.4 bits (71), Expect = 3.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 767 PSVPSEP-PKLPPSIPS-EPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
P +EP + P S P E P S+ T PP P R P +P+ + P+RP
Sbjct: 168 PGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAPSRRTPRPRRKPRGNRTRPSRP 224
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 31.3 bits (72), Expect = 3.5
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 23 EFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSILKKTHDDLEQL 80
E + EL K RRE + + EE EA EG ++E +K+ T V K+ ++ ++L
Sbjct: 86 ELKSGELEK-RRERREEAEEKLEEAKEEGDAEEARKYAKRTVRVT---KEIVEECKKL 139
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 31.6 bits (72), Expect = 3.7
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 770 PSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
+ PP+ ++P + P T P P PV AP A AP
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRT---QPAAPVTQAVEAPKV 175
Score = 30.8 bits (70), Expect = 5.5
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 748 PTEPPKLPPTIPAEP-PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
+ PP A+P P PP + P + P P
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVE 176
Score = 30.4 bits (69), Expect = 7.3
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP-Q 801
N + + A+ + P + P PP + P + P P
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVT 167
Query: 802 RPPVPPIPEPK 812
+ P E +
Sbjct: 168 QAVEAPKVEAE 178
>gnl|CDD|182725 PRK10781, rcsF, outer membrane lipoprotein; Reviewed.
Length = 133
Score = 30.4 bits (69), Expect = 3.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 792 PTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKE 831
P EP + P P R AP ++ N E
Sbjct: 23 PVEPVQSTAPPPKAEPAKPKAP------RAAPVRLYTNAE 56
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 29.1 bits (66), Expect = 3.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 132 PRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSE 191
P +DLP +YD D E+EE +E EDL + ++EE++ E
Sbjct: 30 PLSQDLPGLDYDYDSDAEWEEEEEG---------------EDL-------ESEDEEDEEE 67
Query: 192 VDEDIFD 198
D+D D
Sbjct: 68 DDDDDMD 74
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 31.9 bits (73), Expect = 4.0
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 22/61 (36%)
Query: 254 GCAVDVLAGKVDKPVSPLPEHHESTPRRRPKPVDLLLGSFDEQSPRAAELENVSNTLEEP 313
C VL G V PV+ P ++DE + A+L N+ L P
Sbjct: 83 AC---VLGGFVPVPVAVPP-------------------TYDEPNAAVAKLRNIWELLGSP 120
Query: 314 V 314
V
Sbjct: 121 V 121
>gnl|CDD|191194 pfam05111, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 410
Score = 31.5 bits (71), Expect = 4.0
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP--- 806
E + ++P PP LP S PS P+ P P P +I P K PQ P P
Sbjct: 100 ETQQYEYSVPVHPPPLP-SQPSLQPQQPGLKPFLQPTAATAIQDTPQKAGPQPPMHPGQL 158
Query: 807 -------PIPEPKVAPS-VPARPAPPKI--LDNKEPPIIP 836
P +VAPS P P P + D + P +
Sbjct: 159 PLQEAELPEVHEQVAPSEKPPTPELPGMDFADPQIPSVFQ 198
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 31.8 bits (72), Expect = 4.0
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 810 EPKVAPSVPARPAPPKILDNK--EPPIIPRDSSDLTYNTSTPSSRKASI---TNPE---A 861
K V + PP+ L K I +D+ + S S K ++ +
Sbjct: 20 PRKSDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSS 79
Query: 862 PRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKS--SQDIQRITSASQSRKASN 914
P+ + + N +A +S S + S S + S++QSRK S
Sbjct: 80 PKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSG 134
>gnl|CDD|216325 pfam01140, Gag_MA, Matrix protein (MA), p15. The matrix protein,
p15, is encoded by the gag gene. MA is involved in
pathogenicity.
Length = 129
Score = 30.2 bits (68), Expect = 4.3
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 746 SIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI 787
+ EPP P L PS +P PS P P +
Sbjct: 87 DLAFEPPPWVKPFVDPPKVLLPSSTPKPVSPSPSAPPRPSSL 128
Score = 29.4 bits (66), Expect = 8.3
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
EPP P + PS +P P PP P
Sbjct: 91 EPPPWVKPFVDPPKVLLPSSTPKPVSPSPSAPPRPS 126
Score = 29.0 bits (65), Expect = 9.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 762 PPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
PP + P V P L PS +P PS P P +
Sbjct: 93 PPWVKPFVD-PPKVLLPSSTPKPVSPSPSAPPRPSSL 128
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 31.5 bits (72), Expect = 4.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 23 EFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSILKKTHDDLEQL 80
E AE L + RRE + + EE EA +G +E +K+ ++ + S + + ++L
Sbjct: 85 ELKAETLEE-RREIREEAEEKWEEALEKGDLEEARKYAQRSSRLTS---EIVESSKKL 138
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 31.6 bits (71), Expect = 4.4
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 729 HVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIP 788
++V+R L P+ T L P+ + P P LP ++ P +
Sbjct: 594 TPRTVSRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLH 653
Query: 789 PS-----IPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
S P + P + P P + + +P +P
Sbjct: 654 QSEVFMGYPFQSPHLG--APSGSPPGKDRDSPDLPRPT 689
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several
domains with different binding properties, the
N-terminal, VWA, domain, this SD1 - synapsin 1 - domain
from residues 229-381, a PTOV(B) or ACID domain from
395-545, an SD2 domain from residues 564-645 and a
C-terminal NR box-containing domain (646-650) from
646-747. This The function of the SD domains is unclear.
Length = 168
Score = 30.6 bits (68), Expect = 4.5
Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
+ P PP A P LPP P P P S S + P P Q
Sbjct: 81 PITPLQQAPIVGPPFSQAPAPVLPPGPPGAPKPSPASQLSLVTTVSPGSGLAPVLTQQQV 140
Query: 803 PPVPPIPEPKVAPSVPARPAPPKI 826
PP P PS+ PA +
Sbjct: 141 PPQQPQQ-----PSMVPTPALGGV 159
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 31.3 bits (71), Expect = 4.8
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 758 IPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSV 817
+P PP V P +PP +P R P PP+ P V
Sbjct: 55 LPGTTATQPPPVVLTPW--SDPRLPDPPHLPDPQTHS---ATAHRNPHPPLNSPARIAHV 109
Query: 818 PARPAP 823
P
Sbjct: 110 HQDFQP 115
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in
neuron-specific adaptor protein (AP) complex AP-3. AP
complexes participate in the formation of intracellular
coated transport vesicles and select cargo molecules for
incorporation into the coated vesicles in the late
secretory and endocytic pathways. There are four AP
complexes, AP-1, AP-2, AP-3, and AP-4, described in
various eukaryotic organisms. Each AP complex consists of
four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3B subunit encoded by ap3m2 gene. Mu3B is specifically
expressed in neurons and neuroendocrine cells.
Neuron-specific AP-3 appears to be involved in synaptic
vesicle biogenesis from endosomes in neurons and plays an
important role in synaptic transmission in the central
nervous system. Unlike AP-1 and AP-2, which function in
conjunction with clathrin which is a scaffolding protein
participating in the formation of coated vesicles, the
nature of the outer shell of neuron-specific AP-3
containing coats remains to be elucidated.
Membrane-anchored cargo molecules interact with adaptors
through short sorting signals in their cytosolic
segments. Tyrosine-based endocytotic signals are one of
the most important sorting signals. They are of the form
Y-X-X-Phi, where Y is tyrosine, X is any amino acid and
Phi is a bulky hydrophobic residue that can be Leu, Ile,
Met, Phe, or Val. These kinds of sorting signals can be
recognized by the C-terminal domain of AP-3 mu3B subunit,
also known as Y-X-X-Phi signal-binding domain that
contains two hydrophobic pockets, one for the
tyrosine-binding and one for the bulky hydrophobic
residue-binding.
Length = 254
Score = 31.2 bits (70), Expect = 4.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1472 LEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLK 1522
L+ V FH CV+ +E R + F PPD + L+ + V +P+ +K
Sbjct: 64 LDDVSFHPCVRFKRWESERILSFIPPDGNF-RLLSYHVSAQNLVAIPVYVK 113
>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
activation/proliferation-associated protein-1 C term.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 343 and 708 amino
acids in length. This family is the C terminal region of
caprin-1. Caprin-1 is a protein involved in regulating
cellular proliferation. In mutated phenotypes, the G1
phase of the cell cycle is greatly lengthened, impairing
normal proliferation. The C terminal region of caprin-1
contains RGG motifs which are characteristic of RNA
binding domains. It is possible that caprin-1 functions
through an RNA binding mechanism.
Length = 319
Score = 31.1 bits (70), Expect = 5.0
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLP-PSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
PP + ++P +P V EP ++P S SE P + +P RP PI
Sbjct: 43 PPVHSESRLSQPSAVP--VQPEPTQVPMVSPTSEGYTSSPPL-YQPSHTAEPRPQTDPID 99
Query: 810 EPKVAPSVPARPAPP 824
+ + S+ + P
Sbjct: 100 PIQASMSLNSEQTPT 114
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein.
Length = 94
Score = 29.3 bits (65), Expect = 5.1
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 767 PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPK 812
P P EPP P P PP P P P + P P I E +
Sbjct: 7 PKPP-EPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQ 51
Score = 28.9 bits (64), Expect = 5.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI 787
+P P EPP P P PP P P P + P + +E PKI
Sbjct: 6 APKPP-EPPAPLPPAPVPPPPPAPPAPVPEPTVKP-VNAEAPKI 47
Score = 28.9 bits (64), Expect = 6.5
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 789 PSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAP 823
P P P +PP P PP P P +P
Sbjct: 7 PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVN 41
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 31.2 bits (71), Expect = 5.3
Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 21/199 (10%)
Query: 4 IPGLKKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALT 63
+ G ++ ++ + + + Q EE E D+
Sbjct: 325 LEGSEEYKELLEKAEAYFSSTASSPGEEILDLLQLDLEELRDEEQDLPPEDD-------- 376
Query: 64 AGVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEE--GQESTL 121
DS L + D+L+ Q +K ++ + ++ + E+ + EE + S+
Sbjct: 377 ---DSWLNISPDELDSELQERQGDKKDLKSNK--EDANEVDDLEEVVSSMEEFLNKVSSF 431
Query: 122 DEAAGTDKPAPRLEDLPLKFEEYD---DDEEFEEGQEPTLDEAAGTD--KPAPRLEDLPL 176
+ A D +D P E+ D D++EF E + L +D
Sbjct: 432 EGAEFADDEDED-DDEPDDSEDKDVSFDEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADE 490
Query: 177 KFEEYDDDEEEEDSEVDED 195
+E DD++E+ S+ +
Sbjct: 491 DDDEDDDEDEDSSSDSTLE 509
>gnl|CDD|193414 pfam12941, HCV_NS5a_C, HCV NS5a protein C-terminal region. This is
a family of proteins found in the hepatitis C virus.
This family contains the C-terminal region of the NS5A
protein. CC The molecular function of the non-structural
5a protein is uncertain. The NS5a protein is
phosphorylated when expressed in mammalian cells. It is
thought to interact with the ds RNA dependent
(interferon inducible) kinase PKR.
Length = 244
Score = 30.9 bits (70), Expect = 5.4
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 760 AEPPKLPPSVPSE-----PPKLPPSIP--SEPPKIPPSIPT------EPPKI------PP 800
AE SV +E PK PP++P + P PP + T EPP + P
Sbjct: 83 AETDDREISVAAECHRPPRPKFPPALPIWARPDYNPPLLETWKAPDYEPPTVHGCALPPA 142
Query: 801 QRPPVPP 807
PPVPP
Sbjct: 143 GLPPVPP 149
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 31.6 bits (72), Expect = 5.5
Identities = 17/86 (19%), Positives = 21/86 (24%), Gaps = 7/86 (8%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP-----PKIPPSIPTEPPKIPPQRPPVP 806
P PT PP P S P L P + + P T
Sbjct: 111 PARAPTGRLPPPVAPLSGLLGNPNLAPYLRTRHLVDFSVVPDPRSLTRWVFDRSDTAA-- 168
Query: 807 PIPEPKVAPSVPARPAPPKILDNKEP 832
P P R PP+ +
Sbjct: 169 TKAHPSGVALPPPRAPPPRNTTDPAT 194
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 29.3 bits (66), Expect = 5.5
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
L P PA P PP P+ P P PP P PQ PP PP P P
Sbjct: 56 LEPL-PAYGQYAAPPPYGPPPPYYPAPPGVYPTPPP--PNSGYMADPQEPP-PPYPGP 109
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 31.0 bits (70), Expect = 5.7
Identities = 31/134 (23%), Positives = 44/134 (32%), Gaps = 10/134 (7%)
Query: 700 SPTPDVQHQNLMGDEDITPI-------FPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPP 752
S D + + DE + + PQ E + ++ S I P
Sbjct: 45 SKRDDDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVP 104
Query: 753 KLPP--TIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP-IP 809
+ P PA P P++ E P P P + P P P V P +P
Sbjct: 105 QPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVP 164
Query: 810 EPKVAPSVPARPAP 823
E +V P PAP
Sbjct: 165 EQQVQPEEVVEPAP 178
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 31.1 bits (70), Expect = 5.7
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 761 EPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR---PPVPPIPEPKVAPSV 817
+PP P +P P + K P++P E IP Q+ PP PI + +V P+
Sbjct: 80 QPPPSPEDIPVYEEDWPTFLNPNVDKAGPAVPQE--AIPLQKELPPPQVPIEQKEVKPAP 137
Query: 818 PARPAPPK 825
A +PP+
Sbjct: 138 LADQSPPE 145
Score = 30.7 bits (69), Expect = 7.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
+PP P IP P + K P++P E + +P PP++P ++ V P P
Sbjct: 80 QPPPSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKELP--PPQVPIEQKEVKPAP 137
Query: 810 EPKVAPSVP 818
+P P
Sbjct: 138 LADQSPPEP 146
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.5 bits (67), Expect = 5.8
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 13 GKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDSILKK 72
+ + E+ E EEL +YR E++ + +G S+ E + ++A + +D + +
Sbjct: 8 AEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAA----ELRNYQAFISALDEAIAQ 63
Query: 73 THDDLEQLKQ 82
+LEQ ++
Sbjct: 64 QQQELEQAEK 73
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 31.2 bits (70), Expect = 5.8
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKV 813
+P P P+ P P+ P+ P +P + P R +PP P P++
Sbjct: 397 IPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRM 456
Query: 814 --APSVPARPA 822
A VP P
Sbjct: 457 PEASPVPGAPD 467
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 30.2 bits (68), Expect = 5.9
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 9 KKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGVDS 68
K +++ H ++E ++EE A +E Q +E++ +E E K D K+K + +
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMH---EK 58
Query: 69 ILKKTHDDLEQLKQ 82
L + H D E +K+
Sbjct: 59 YL-RVHADFENVKK 71
>gnl|CDD|216623 pfam01644, Chitin_synth_1, Chitin synthase. This region is found
commonly in chitin synthases classes I, II and III.
Chitin a linear homopolymer of GlcNAc residues, it is an
important component of the cell wall of fungi and is
synthesised on the cytoplasmic surface of the cell
membrane by membrane bound chitin synthases.
Length = 163
Score = 30.0 bits (68), Expect = 6.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 1225 HLRQPNKKKITGQRFWKKVFVKIVYHGEKPV 1255
HL K K G+ WKKV V IV G +
Sbjct: 22 HLCSRKKSKTWGKDGWKKVVVCIVSDGRTKI 52
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.0 bits (70), Expect = 6.8
Identities = 29/176 (16%), Positives = 66/176 (37%), Gaps = 7/176 (3%)
Query: 5 PGLKKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTA 64
K K KN+ +EEE + E++ + +++ + K +E + + ++ E +
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP-PKEKE 147
Query: 65 GVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEA 124
+ D E+ K+ +R K K++ E E+ +++ +
Sbjct: 148 KEKEKKVEEPRDREEEKKR---ERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 125 AGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEE 180
G + E+ + +E DD ++ E P ++ + R LK +
Sbjct: 205 KGKPEEPDVNEE---REKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPD 257
>gnl|CDD|204178 pfam09246, PHAT, PHAT. The PHAT (pseudo-HEAT analogous topology)
domain assumes a structure consisting of a layer of
three parallel helices packed against a layer of two
antiparallel helices, into a cylindrical shaped
five-helix bundle. It is found in the RNA-binding
protein Smaug, where it is essential for high-affinity
RNA binding.
Length = 108
Score = 29.0 bits (65), Expect = 6.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 496 SNLKKDLLGGSTTDLS-------HIGFTPIEPTTDKTPEEI 529
L+KDLLGG LS +I TP++P PE+I
Sbjct: 6 LRLEKDLLGGQRAQLSTVVEELTNIVLTPMKPIGSDQPEDI 46
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 31.1 bits (70), Expect = 6.9
Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 25/142 (17%)
Query: 750 EPPKLPPTIPAEPPKLP---------PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPK--- 797
+PP P P P + P L PP P P
Sbjct: 441 DPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPAT 500
Query: 798 -------IPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYN----T 846
PP+ PP E P APP+ ++P + P D +
Sbjct: 501 YYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPE--QMEDPYLEPDDDRFDRRDGAAAA 558
Query: 847 STPSSRKASITNPEAPRKYSKE 868
+T R+A + + + +
Sbjct: 559 ATSHPREAPAPDDDPIYEGVSD 580
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 30.1 bits (68), Expect = 7.0
Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 769 VPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAP-SVPARPAPPKIL 827
+ P S + P P P PE P PA PAPP+
Sbjct: 3 AGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRAT 62
Query: 828 DNKEPPIIPRDS 839
D P D+
Sbjct: 63 DGDRDPQPLADA 74
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family.
Length = 850
Score = 30.8 bits (70), Expect = 7.2
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P L P E P E P P PP RPP PP
Sbjct: 607 PIRQAVLMNRSPPELPTDS-EFEREDEPADPRPPPPVETEPPPRPPPPP 654
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This
family represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 29.1 bits (66), Expect = 7.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 9 KKRKGKKNKH-KEEEEFDAEELAKYR--REHQAKEEEAGAEASSEG 51
+KR+ K+ K KEE E +E+ +YR RE + KE EA S
Sbjct: 24 RKRRAKRLKQAKEEAE---KEIEEYRAQREAEFKEFEAEHSGSRGE 66
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 30.3 bits (68), Expect = 7.2
Identities = 17/69 (24%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPS------EPPKIPPSIPTEPPK 797
SP P+ P L P + P P PK P PP
Sbjct: 120 SPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRPPHPPD 179
Query: 798 IPPQRPPVP 806
I P P P
Sbjct: 180 ISPFYPLSP 188
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.7 bits (69), Expect = 7.4
Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 23/192 (11%)
Query: 7 LKKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTA-- 64
+ KG + K+ + D E E E + G E E KS + +K A
Sbjct: 199 ETEGEKGGGGRGKDLKIKDLEG----DDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Query: 65 GVDSILKKTHDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEA 124
D K D + + ++ G+ + + + S D
Sbjct: 255 LDDDKKGKRGGDDDADEY----------------DSDDGDDEGREEDYISDSSASGNDPE 298
Query: 125 AGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEA-AGTDKPAPRLEDLPLKFEEYDD 183
DK +P + P ++ D +E EE E + G + + L ++ D
Sbjct: 299 EREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
Query: 184 DEEEEDSEVDED 195
++ +DS++D +
Sbjct: 359 GDDSDDSDIDGE 370
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.0 bits (70), Expect = 7.4
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 766 PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPAR 820
P S + P P + P P+ +P PP ++ S AR
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLAR 256
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 27.9 bits (62), Expect = 7.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 10 KRKGKKNKHKEEEEFDAEELA--KYRREHQAKEEEAGAEASSEG 51
K+K K K+++E D E+LA + ++E +E A+A +G
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKG 50
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 30.5 bits (69), Expect = 8.4
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVP 818
P P P P + P + PS + P PV P + P
Sbjct: 417 PRMSMMPTPMGPGGPLR-PNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQ 475
Query: 819 ARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKA 854
P P + + L ++TP +K
Sbjct: 476 DLPQPQSTASQGGQ--NKKLAQVLA--SATPQMQKQ 507
>gnl|CDD|163535 TIGR03823, FliZ, flagellar regulatory protein FliZ. FliZ is
involved in the regulation of flagellar assembly and
possibly also the down-regulation of the motile
phenotype. FliZ interacts with the flagellar
translational activator FlhCD complex.
Length = 168
Score = 29.8 bits (67), Expect = 8.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 366 GIDELIDDELIDGETDEFAAL 386
+D LIDD E AAL
Sbjct: 51 RMDTLIDDNGWSVLQQELAAL 71
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 30.5 bits (69), Expect = 9.2
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ P T P ++ + S+ P+ + P PP+ P PP+ P +R
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.7 bits (70), Expect = 9.3
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 146 DDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVDEDIFDTAFVDLV 205
++ ++ EP D+ G + E+ ++ D++++++D E +E+ D + +
Sbjct: 298 SADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Query: 206 TTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKVIKPESEKE 245
++ DS E D+ + + K + E
Sbjct: 358 EEDE-------DSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein. This
family consists of several Neisseria meningitidis TspB
virulence factor proteins.
Length = 502
Score = 30.3 bits (68), Expect = 9.4
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 1116 DFNVFIRPQNFENNLQPNTALVPPSLAPPPKSPAVPASQDSSPRFNPFDKGDVFAAPKEN 1175
D V RP +L P +A P + P SPA + + +PR NP + + P N
Sbjct: 310 DVQVIPRP-----DLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLN 364
Query: 1176 IFTQPDELNLTMQRTDSQETPPTP 1199
PD R DS P P
Sbjct: 365 PDANPDTDGQPGTRPDSPAVPDRP 388
>gnl|CDD|147569 pfam05456, eIF_4EBP, Eukaryotic translation initiation factor 4E
binding protein (EIF4EBP). This family consists of
several eukaryotic translation initiation factor 4E
binding proteins (EIF4EBP1,2 and 3). Translation
initiation in eukaryotes is mediated by the cap
structure (m7GpppN, where N is any nucleotide) present
at the 5' end of all cellular mRNAs, except organellar.
The cap is recognised by eukaryotic initiation factor 4F
(eIF4F), which consists of three polypeptides, including
eIF4E, the cap-binding protein subunit. The interaction
of the cap with eIF4E facilitates the binding of the
ribosome to the mRNA. eIF4E activity is regulated in
part by translational repressors, 4E-BP1, 4E-BP2 and
4E-BP3 which bind to it and prevent its assembly into
eIF4F.
Length = 113
Score = 28.9 bits (65), Expect = 9.5
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 735 RNLMDDLENSPSIPTEPPKLPPTIP--AEPPKLPPSVPSEPPKLPPSIPSEPPKIP 788
R + +L NSP T P L P IP P EP + P +E K
Sbjct: 52 RKFLLELRNSPLARTPPCCL-PNIPGVTLPNTPSTPNTKEPTEQPE--ETESLKDE 104
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 30.5 bits (69), Expect = 9.8
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 782 SEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P+ TE ++ P+ VPP+ + + R K
Sbjct: 228 VAAPQEKAEETTEVVEVSPK-ISVPPVLKLAAEQAPAGRVEREK 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.132 0.382
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 91,545,732
Number of extensions: 9318684
Number of successful extensions: 15173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11193
Number of HSP's successfully gapped: 781
Length of query: 1753
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1642
Effective length of database: 6,014,308
Effective search space: 9875493736
Effective search space used: 9875493736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (29.4 bits)