RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5848
(1753 letters)
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing,
endocytosis, lipid-binding, golgi apparatus, adaptor,
membrane, transport; HET: IHP; 2.59A {Rattus norvegicus}
PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 152 bits (383), Expect = 3e-39
Identities = 71/396 (17%), Positives = 145/396 (36%), Gaps = 61/396 (15%)
Query: 1318 ERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAP--QTSQLFKIGSHSYEAMKQ 1375
+ + + + I+ ++ + E ++ G P + + + G S K+
Sbjct: 87 DVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKE 146
Query: 1376 FTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFL 1435
I + R + Y+ E+ + ++ + + + G +L R+ +L
Sbjct: 147 EQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYL 206
Query: 1436 SGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFK 1495
SGMP+ + G+ND + K+ G D ++ I ++ FH CV+ +++ R+I F
Sbjct: 207 SGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFI 266
Query: 1496 PPDACYIELMRFRVRPPRNRELPLQLKAVMCV-TGNKVELRADILVPGFVSRKLGQIPCE 1554
PPD + ELMR+ R ++ LP ++ ++ K+E++ I S + +
Sbjct: 267 PPDGEF-ELMRY--RTTKDIILPFRVIPLVREVGRTKLEVKVVIK-----SNFKPSLLAQ 318
Query: 1555 DIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSG 1614
I VR P P ++ + G
Sbjct: 319 KIEVRIPTPLN-----------------------------------TSGVQ---VICMKG 340
Query: 1615 QSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTM 1674
++KY+ +IVW++ R+ + + L + + F +
Sbjct: 341 KAKYKASENAIVWKIKRMAGM-----KESQISAEIELLPTNDKKKWARPPI---SMNFEV 392
Query: 1675 PATQVSHTTVRSVSISNSD---SDVPPEKYVRHLAR 1707
P S VR + + SD K+VR++ R
Sbjct: 393 PFA-PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 427
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 145 bits (367), Expect = 3e-38
Identities = 66/345 (19%), Positives = 127/345 (36%), Gaps = 57/345 (16%)
Query: 1366 GSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIA 1425
G S K+ I + R + Y+ E+ + ++ + + + G +L
Sbjct: 16 GIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHV 75
Query: 1426 RVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDE 1485
R+ +LSGMP+ + G+ND + K+ G D ++ I ++ FH CV+ +
Sbjct: 76 SGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSK 135
Query: 1486 YEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVS 1545
++ R+I F PPD + ELMR+ R ++ LP ++ ++ G + ++ V S
Sbjct: 136 FDSERSISFIPPDGEF-ELMRY--RTTKDIILPFRVIPLVREVGRT---KLEVKV-VIKS 188
Query: 1546 RKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLE 1605
+ + I VR P P ++
Sbjct: 189 NFKPSLLAQKIEVRIPTPLN-----------------------------------TSGVQ 213
Query: 1606 PQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTIC 1665
+ G++KY+ +IVW++ R+ + + L +
Sbjct: 214 ---VICMKGKAKYKASENAIVWKIKRMAGM-----KESQISAEIELLPTNDKKKW---AR 262
Query: 1666 QYAYVEFTMPATQVSHTTVRSVSISNSD---SDVPPEKYVRHLAR 1707
+ F +P S VR + + SD K+VR++ R
Sbjct: 263 PPISMNFEVPFA-PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 306
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 144 bits (364), Expect = 3e-37
Identities = 68/372 (18%), Positives = 133/372 (35%), Gaps = 60/372 (16%)
Query: 1340 KEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKM 1399
+++ S L K GL + H + + + +
Sbjct: 62 RKYASGLLKAGL-IRHTVNKITFSEQCYYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSR 120
Query: 1400 EEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRH 1459
E+ + ++ + + + G +L R+ +LSGMP+ + G+ND + K+ G
Sbjct: 121 NELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTA 180
Query: 1460 DIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPL 1519
D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+ R ++ LP
Sbjct: 181 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRY--RTTKDIILPF 237
Query: 1520 QLKAVMCVTG-NKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRY 1578
++ ++ G K+E++ I S + + I VR P P
Sbjct: 238 RVIPLVREVGRTKLEVKVVIK-----SNFKPSLLAQKIEVRIPTPLN------------- 279
Query: 1579 GSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQG 1638
++ + G++KY+ +IVW++ R+
Sbjct: 280 ----------------------TSGVQ---VICMKGKAKYKASENAIVWKIKRMAGM--- 311
Query: 1639 SYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSD---SD 1695
+ + L + + F +P S VR + + SD
Sbjct: 312 --KESQISAEIELLPTNDKKKWARP---PISMNFEVPFA-PSGLKVRYLKVFEPKLNYSD 365
Query: 1696 VPPEKYVRHLAR 1707
K+VR++ R
Sbjct: 366 HDVIKWVRYIGR 377
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 144 bits (363), Expect = 9e-37
Identities = 73/447 (16%), Positives = 147/447 (32%), Gaps = 82/447 (18%)
Query: 1284 AQQYDNFGKIFTVKLQFIFYKERPGVRPGQVTKAE-----------RITNKLSQFAAY-- 1330
++ I + + + +K ++ S++
Sbjct: 40 KEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELE 99
Query: 1331 --AIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFTVCIEEALFKLP 1388
+I+ ++ + E +L G P + L + + ++ +
Sbjct: 100 EESIRDNFVIIYELLDELMDFGYPQTT--DSKILQEFITQEGHKLETGAPRPPATVTNAV 157
Query: 1389 VHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDL 1448
R + Y+ EV + ++ + + + G++L+ + FLSGMP++ LG+ND
Sbjct: 158 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 217
Query: 1449 VRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFR 1508
V G+ + + LE V+FH CV+ +E RTI F PPD + ELM +R
Sbjct: 218 VLFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYR 268
Query: 1509 VRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIY 1568
+ + ++ V R + +V K + ++ + P+P
Sbjct: 269 LNTHVKPLIWIE-----SVIEKHSHSRIEYMVKAKSQFK-RRSTANNVEIHIPVPND--- 319
Query: 1569 LFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWR 1628
S + T G K+ ++ IVW
Sbjct: 320 ------------ADSPK-----------------------FKTTVGSVKWVPENSEIVWS 344
Query: 1629 MPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVS 1688
+ P + + L S + + V+F +P S VR +
Sbjct: 345 VKSFPGG-----KEYLMRAHFGLPSVEAEDKEGKPPIS---VKFEIPYFTTSGIQVRYLK 396
Query: 1689 ISNSDSDVPPEKYVRHLAR---HEYRV 1712
I S +VR++ + ++ R
Sbjct: 397 IIE-KSGYQAIPWVRYITQNGDYQLRT 422
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF,
antigen presentation, HOST defense, adaptor protein
complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Length = 266
Score = 136 bits (342), Expect = 2e-35
Identities = 63/326 (19%), Positives = 114/326 (34%), Gaps = 65/326 (19%)
Query: 1390 HRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLV 1449
R + Y+ EV + ++ + + + G++L+ + FLSGMP++ LG+ND V
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 1450 RQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
G+ + + LE V+FH CV+ +E RTI F PPD + ELM +R+
Sbjct: 62 LFDNTGRGKS--------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEF-ELMSYRL 112
Query: 1510 RPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYL 1569
+ + V R + +V K + ++ + P+P
Sbjct: 113 NTHVKPLIW-----IESVIEKHSHSRIEYMVKAKSQFK-RRSTANNVEIHIPVPND---- 162
Query: 1570 FRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629
S + T G K+ ++ IVW +
Sbjct: 163 -----------ADSPK-----------------------FKTTVGSVKWVPENSEIVWSV 188
Query: 1630 PRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSI 1689
P + + L S + + +F +P S VR + I
Sbjct: 189 KSFPGG-----KEYLMRAHFGLPSVEAEDKEGKPPISV---KFEIPYFTTSGIQVRYLKI 240
Query: 1690 SNSDSDVPPEKYVRHLAR---HEYRV 1712
S +VR++ + ++ R
Sbjct: 241 IE-KSGYQALPWVRYITQNGDYQLRT 265
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated
PIT, golgi apparat membrane, phosphoprotein, protein
transport, transport; 1.60A {Homo sapiens}
Length = 301
Score = 134 bits (337), Expect = 1e-34
Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 61/327 (18%)
Query: 1388 PVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVND 1447
PV R+ + EV + V+ + V GS+LK + + FL ++ +G+ +
Sbjct: 21 PVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTE 80
Query: 1448 LVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRF 1507
GK + + IR++ V FHS V DE+E R ++ +PP +MR+
Sbjct: 81 EFSVGKSELRGYGP-------GIRVDEVSFHSSVNLDEFESHRILRLQPPQGEL-TVMRY 132
Query: 1508 RVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWI 1567
++ LP +L + L+ + + L + ++ + P+P
Sbjct: 133 QLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLR---CDLLSKSQALNVRLHLPLPRG-- 187
Query: 1568 YLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVW 1627
V +L E++S + K E ++ W
Sbjct: 188 ---------------------------------VVSLS---QELSSPEQKAELAEGALRW 211
Query: 1628 RMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQ------YAYVEFTMPATQVSH 1681
+PR+ + + + +M + P + A + F +P S
Sbjct: 212 DLPRVQGG-----SQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSG 266
Query: 1682 TTVRSVSISN-SDSDVPPEKYVRHLAR 1707
VR + ++ + P K+VRHL+
Sbjct: 267 LQVRFLRLAFRPSGNANPHKWVRHLSH 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.5 bits (172), Expect = 5e-12
Identities = 100/557 (17%), Positives = 173/557 (31%), Gaps = 179/557 (32%)
Query: 1122 RPQNFEN-NLQPNTALVPPSLAPPPKSPAVPASQ--DSSPRFNPFDKGDVFAAPKENIFT 1178
RP + +L+ LVP + ASQ + F+K + P E F
Sbjct: 7 RPLTLSHGSLEH-VLLVPTASFFI-------ASQLQEQ------FNK--ILPEPTEG-FA 49
Query: 1179 QPDE-----------LNLTMQRTDSQETPPTPLFDEDVSQPLEDFPRIKYDGPGWEMH-- 1225
DE L + + FD+ ++ L +F Y G ++H
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQ---FDQVLNLCLTEFEN-CYLE-GNDIHAL 104
Query: 1226 ---LRQPNKKKITGQRFWKKVFVKIVYHGEKPVVH-----LYNKADDK------------ 1265
L Q N + + K ++ ++P L+ +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 1266 ---DPFQEL--------PL-EPCYSVS-----EIGAQQYDNFGKIFTVKLQFIFYKERPG 1308
D F+EL L S E+ + + K+FT L + + E P
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNILEWLENPS 223
Query: 1309 VRPGQ--VTKAER----ITNKLSQFAAYAIQGDYQGV--KEFGSDLRKL-----GLPVEH 1355
P + + I + Q A Y + G E S L+ GL
Sbjct: 224 NTPDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 1356 APQTSQ---------------LFKIGSHSYEAMKQFTVCIEEALFKLPV-HRDRALTYKM 1399
A + LF IG YEA + + ++ + + + + + M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSP-M 338
Query: 1400 EEVQITTVDEI--YVEQ-NETGSILKQIARVRLF-----FLGFLSGMPDIEL-GVNDLVR 1450
+ T +++ YV + N KQ+ + L + +SG P L G+N +R
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLV--VSGPP-QSLYGLNLTLR 394
Query: 1451 ---------QGK------EVVGRHDIIPVVTEEWIRLEGVEFHS--------CVQQDEYE 1487
Q + ++ + +PV FHS + +D +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPV---------ASPFHSHLLVPASDLINKDLVK 445
Query: 1488 KGRTIKFKPPDACYIELMRFRVRPPRN----REL--PLQLKAVMCVTGNKV------ELR 1535
+ F D ++ V + R L + + V C+ V + +
Sbjct: 446 NN--VSFNAKD------IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 1536 AD-ILV--PGFVSRKLG 1549
A IL PG S LG
Sbjct: 498 ATHILDFGPGGASG-LG 513
Score = 66.6 bits (162), Expect = 8e-11
Identities = 104/672 (15%), Positives = 176/672 (26%), Gaps = 262/672 (38%)
Query: 107 EQAWTEFEEGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDK 166
Q +F + + A D+P E L KF Y E + D+
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLGYVSSLV-EPSKVGQFDQV----- 83
Query: 167 PAPRLEDLPLKFEEYDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDGP 226
L L E F+ + + D+H
Sbjct: 84 -------LNLCLTE----------------FENCY---LEGNDIH--------------- 102
Query: 227 DPFDTSIVDKVIKPESEKERKRKLISLGCAVD--VLAGKVDKPVSPLPEHHESTPRRRPK 284
++ K+++ K K + + + ++A + P + S
Sbjct: 103 -----ALAAKLLQENDTTLVKTKEL-IKNYITARIMAKR------PFDKKSNS------- 143
Query: 285 PVDLLLGSFDEQSPRAAELENVS---------NTLEEPVKTLLDEDNENLPDSPVDVADT 335
L RA N NT ++ +E
Sbjct: 144 ---ALF--------RAVGEGNAQLVAIFGGQGNT-DDY----FEE--------------- 172
Query: 336 LSILQKINETVQAAQLPQVEKKATPILEKFGIDELIDDELIDGETDEFAALATESLAKSP 395
L+ + +T ++ +LI +F+A L ++
Sbjct: 173 ---LRDLYQTYH------------VLVG-----DLI----------KFSAETLSELIRTT 202
Query: 396 LKAHNNFEGIKPQRPPPPSVLNIQNDLGDPEDPFDTSF---AEKVLPGKCELKL----IE 448
L A F LNI L +P + D + P ++L +
Sbjct: 203 LDAEKVF----------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 449 NEILGKDESELIQSERVKFDGKTIKYSGI----TIEINNSINSKEENAEDTSNLKKDLLG 504
++LG EL R G T G+ I +S S + +
Sbjct: 253 AKLLGFTPGEL----RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV------ 302
Query: 505 GSTTDLSHIGF-----TP---IEPTTDKTPEEIVFSSDDPFDTSIVHSLTAPGKAELKLL 556
L IG P + P+ + E + P + ++ S++ + ++
Sbjct: 303 -----LFFIGVRCYEAYPNTSLPPSILEDSLEN--NEGVP--SPML-SISNLTQEQV--- 349
Query: 557 EQDLLSETKTNEIKTEEKVAH-----RPDQLIGTKKHSIPKVVAFIEPPGVNGTEENSRK 611
QD + KTN K L VV+ PP
Sbjct: 350 -QDYV--NKTNSHLPAGKQVEISLVNGAKNL----------VVS--GPP----------- 383
Query: 612 PSYQTTSALFYNLRHYPDASSKDDLMDNKQDQTP--RRPPPPR----PVIPP--S---KE 660
Q+ L LR A S D Q + P R PV P S
Sbjct: 384 ---QSLYGLNLTLRKAK-APSGLD-----QSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 661 TKDLILT--VTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITP 718
DLI V ++ + + P+ D S D++ I+
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQ----------IPVYDTFDGS---DLRVL----SGSISE 477
Query: 719 -IFPQTVSEPNH 729
I + P
Sbjct: 478 RIVDCIIRLPVK 489
Score = 43.1 bits (101), Expect = 0.001
Identities = 53/307 (17%), Positives = 91/307 (29%), Gaps = 127/307 (41%)
Query: 818 PARPAPPKIL----DNKE--P-PI-----IPRDS--SDLTY-NTSTPSSRKASITNPEAP 862
P PP IL +N E P P+ + ++ + N+ P+ ++ I+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---- 370
Query: 863 RKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSS-----QDIQRITSAS---QSRKASN 914
+N K VV+ S +++ + S QSR +
Sbjct: 371 ------------------VNGAK--NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 915 EVAPDVFSQQ---IT----STNIIENYTTDSSPFIEDHATAVNHEATAE----PIQHTAD 963
E FS + + S + +S I N A+ P+ T D
Sbjct: 411 ERKL-KFSNRFLPVASPFHS-----HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 964 QFMNLFGTSIGKNEPETAFMNQDDTFGIQPAATDFPEQTISQDTLFSQPPTEPQKENVFA 1023
G + ++ + E+ + D + P V
Sbjct: 465 ----------GSD--------------LRVLSGSISERIV--DCIIRLP--------VK- 489
Query: 1024 QNDDLFDAFSAKFESVKINEEKSSAFDPFGGTSAFGD---------------AGTLSSEQ 1068
++ + +F++ I + F P GG S G AGTL
Sbjct: 490 -----WET-TTQFKATHILD-----FGP-GGASGLGVLTHRNKDGTGVRVIVAGTLDI-N 536
Query: 1069 PSDVEGF 1075
P D GF
Sbjct: 537 PDDDYGF 543
Score = 32.3 bits (73), Expect = 2.0
Identities = 46/218 (21%), Positives = 72/218 (33%), Gaps = 77/218 (35%)
Query: 280 RRRPKPVDLLLGSFDEQSPRAAELENVSNTLEEPV-------KTLLDEDNENLPD----S 328
P + + G + R EN S + E + + + E NE+ S
Sbjct: 1666 INNPVNLTIHFGGEKGKRIR----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 329 PVDVADTLSILQKINETVQAAQ--LPQVEKKATPILEKFGIDELIDDE-------LIDGE 379
L + T Q Q L +EK A L+ G LI + L GE
Sbjct: 1722 E---KGLL------SAT-QFTQPALTLMEKAAFEDLKSKG---LIPADATFAGHSL--GE 1766
Query: 380 TDEFAALATESLAKSPLKAHNNFE-GIKPQRPPPPSVLN-----IQNDLGDPEDPFDTS- 432
+AALA SLA + + E ++ V+ +Q + P D S
Sbjct: 1767 ---YAALA--SLADV-M----SIESLVE--------VVFYRGMTMQVAV--PRDELGRSN 1806
Query: 433 ---FAEKVLPGKCELKLIEN------EILGKDESELIQ 461
A + PG+ + E +GK L++
Sbjct: 1807 YGMIA--INPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Score = 31.9 bits (72), Expect = 2.3
Identities = 35/273 (12%), Positives = 61/273 (22%), Gaps = 103/273 (37%)
Query: 1159 RFNPFDKGDVFAAPK-----ENIFTQPDELNLTMQRTDSQETPPTPLFDEDVSQPLEDFP 1213
NP + F K EN + + + +F E E
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENY------SAMIFETIVDGKLKTEKIFKE----INEHST 1715
Query: 1214 RIKYDGPGWEMHLRQPNKKKITGQ-----------RFWKK--VFVKIVY---H--GEKPV 1255
+ + Q T Q K + H GE
Sbjct: 1716 SYTFRSEKGLLSATQ-----FT-QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE--- 1766
Query: 1256 VHLYN----KADDKDPFQELPLEP-----------CYSVSEIGAQQYDNFGKIFTVKLQF 1300
Y AD + +E N+G I
Sbjct: 1767 ---YAALASLAD------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI------- 1810
Query: 1301 IFYKERPGVRPGQVTKA----------ERITNKLSQF--AA--------YAIQGDYQGVK 1340
+ PG+V + ER+ + Y GD + +
Sbjct: 1811 -------AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 1341 EFGSDLRKLGL---PVEHAPQTSQLFKIGSHSY 1370
+ L + L + ++ L ++ H +
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 3e-09
Identities = 91/631 (14%), Positives = 191/631 (30%), Gaps = 186/631 (29%)
Query: 1154 QDSSPRFNP-----FDKGDVFAAPK--------ENIFTQPDELNLTMQRTDSQETPPTPL 1200
+D F FD DV PK ++I D ++ T++ + + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 1201 ---FDEDVSQPLEDFP----RIKYD--GPG--WEMHLRQPNKKKITGQRFWKKVFVKIVY 1249
F E+V + ++ IK + P M++ Q ++ Q F K V
Sbjct: 79 VQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSR-- 133
Query: 1250 HGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKI---------FTVKLQF 1300
+P + L EL + + GK + V+ +
Sbjct: 134 --LQPYLKLRQAL------LELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCKM 180
Query: 1301 ---IFYKERPGVRPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHA- 1356
IF+ + E + L + Y I ++ + S+++ L +
Sbjct: 181 DFKIFW-----LNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIK---LRIHSIQ 231
Query: 1357 PQTSQLFKIGSHSY-------------EAMKQFTV-CIEEALFK-LPVHRDRALTYKMEE 1401
+ +L K S Y +A F + C K L R + +T +
Sbjct: 232 AELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSC------KILLTTRFKQVT---DF 280
Query: 1402 VQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRH-D 1460
+ T I ++ + ++ + L +L + DL R+ R
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL---LLKYL------DCRPQDLPREVLTTNPRRLS 331
Query: 1461 IIPVVTEEWI-RLEGVEFHSCVQQDEYEK-GRTIK-----FKPPD--ACYIELMRFRVRP 1511
II + + + + +K I+ +P + + L F
Sbjct: 332 IIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---- 381
Query: 1512 PRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLF 1570
P + +P ++ + + ++ ++V L
Sbjct: 382 PPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSL---------------------- 416
Query: 1571 RVEKHFRYGSVKSAHRRTGKVKGIE-RFLGAVDNLEPQLMEVTSGQSKYEHQHRSIV--W 1627
VEK + ++ S I ++N E L HRSIV +
Sbjct: 417 -VEKQPKESTI-SIP-------SIYLELKVKLEN-EYAL-------------HRSIVDHY 453
Query: 1628 RMPR------LPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSH 1681
+P+ L Y ++ + + + + +++F ++ H
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRFLEQKIRH 509
Query: 1682 TTV---RSVSISNSDSDVPPEKYVRHLARHE 1709
+ S SI N+ + + Y ++ ++
Sbjct: 510 DSTAWNASGSILNTLQQL--KFYKPYICDND 538
Score = 60.6 bits (146), Expect = 4e-09
Identities = 93/637 (14%), Positives = 181/637 (28%), Gaps = 197/637 (30%)
Query: 189 DSEVDE------DI---FDTAFVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKVIK 239
D E E DI F+ AFV ++ + D P +D +I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV-----DNFDCKDVQDMPKSI------LSKEEIDHIIM 56
Query: 240 PESEKERKRKLISLGC-----AVDVLAGKVDKP-----VSPLPEHHESTPRRRPKPVDLL 289
+ +L V +V + +SP+ + + ++
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--------KTEQRQPSMM 108
Query: 290 LGSFDEQSPRAAELENVSNTLEEPVKTLLDEDNENLPDSPVDVADTLSILQKINETVQAA 349
+ EQ R L N DN+ V S LQ + QA
Sbjct: 109 TRMYIEQRDR---LYN---------------DNQVFAKYNV------SRLQPYLKLRQAL 144
Query: 350 QLPQVEKKATPILE-KFGIDELIDDELIDGETDEFAALATESLAKSPLKAHNNFE----- 403
+ K +++ G G+T +A + ++ +F+
Sbjct: 145 LELRPAKNV--LIDGVLGS----------GKT----WVALDVCLSYKVQCKMDFKIFWLN 188
Query: 404 -GIKPQRPPPPSVLNIQNDLGDPEDPFDTSFAEKVLPGKCELKLIENE----ILGKD--E 456
P +VL + L DP TS ++ K + I+ E + K
Sbjct: 189 LK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 457 SELI----QSERV--KFDGK-----TIKYSGITIEINNSINSKEENAEDTSNLKKD---- 501
L+ Q+ + F+ T ++ +T ++ + + + L D
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 502 ----LLGGSTTDLSHIGFTPIEPTTDKTPEEIVFSSDDPFDTSIVHSLTAPGKA---ELK 554
L DL P E++ ++ P SI+ G A K
Sbjct: 306 LLLKYLDCRPQDL---------------PREVLTTN--PRRLSIIAESIRDGLATWDNWK 348
Query: 555 LLEQDLLSETKTNEIKTEEKVAHRPDQLIGTKKHSIPKVVAFIEPPGVNGTEENSRKPSY 614
+ D L+ + + E P + + ++ F PP +
Sbjct: 349 HVNCDKLTTIIESSLNVLE-----PAEY----RKMFDRLSVF--PPSAHIPT-------- 389
Query: 615 QTTSALFYNLRHYPDASSKDDLMDNKQDQT--PRRPPPPRPVIPPSKETKDLILTVTGHM 672
S +++++ S +++ + ++P IP + L + +
Sbjct: 390 ILLSLIWFDV----IKSDVMVVVNKLHKYSLVEKQPKESTISIP------SIYLELKVKL 439
Query: 673 EATSS-H---LDRCHAARTPSPTPMRDIHSPSPTPDVQ--------HQNLMGDEDITPIF 720
E + H +D + +T D P Q H + + +F
Sbjct: 440 ENEYALHRSIVDHYNIPKT------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 721 PQ--------------TVSEPNHVKSVTRNLMDDLEN 743
+ N S+ N + L+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKF 529
Score = 52.5 bits (125), Expect = 1e-06
Identities = 78/626 (12%), Positives = 162/626 (25%), Gaps = 178/626 (28%)
Query: 1108 SADSDEDSD--FNVFIRPQN------FENNLQPNTALVPPSLAPPPKSPAVPASQDSSPR 1159
S D+ + F + Q E L+ N + + + P++ R
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 1160 FNPFDKGDVFAAPKENIFTQPDELNLTMQRTDSQETPPTP-------------------L 1200
++ VF K N+ L L R E P
Sbjct: 117 DRLYNDNQVF--AKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 1201 FDEDVSQPLEDFPRIKYDGPGWEMHLRQPNKKK---ITGQRFWKKV---FVKIVYHGEKP 1254
V W ++L+ N + Q+ ++ + H
Sbjct: 172 LSYKV---QCKMD----FKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 1255 VVHLYN-KADDKDPFQELPLEPCYSV------SEIGAQQYDNFG---KIF--------TV 1296
+ +++ +A+ + + P E C V ++ ++ F KI T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKILLTTRFKQVTD 279
Query: 1297 KLQFIFYKERPGV-RPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSDLR---KLGLP 1352
L +T E S Y + DL P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDE----VKSLLLKYL------DCRP--QDLPREVLTTNP 327
Query: 1353 ---------VEHAPQTSQLFKIGSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKM---- 1399
+ T +K + + T IE +L L R + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVF 381
Query: 1400 -EEVQITT-VDEIY---VEQNETGSILKQIARVRLFFLG---FLSGMPDIELGVNDLVRQ 1451
I T + + V +++ ++ ++ + L +P I L +L +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVK 438
Query: 1452 GKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYI-ELMRFRVR 1510
+ H I ++ D+ P Y + ++
Sbjct: 439 LENEYALHRSI---------VDHYNIPKTFDSDD-------LIPPYLDQYFYSHIGHHLK 482
Query: 1511 PPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKL--------GQIPCEDIMVRFPI 1562
+ E + V ++ R F+ +K+ + + +
Sbjct: 483 NIEHPERMTLFRMVF------LDFR-------FLEQKIRHDSTAWNASGSILNTLQQLK- 528
Query: 1563 PECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQH 1622
Y + + + + V I FL +E L ++
Sbjct: 529 ----FY----KPYIC----DNDPKYERLVNAILDFL---PKIEENL---------ICSKY 564
Query: 1623 RSIVWRMPRLPKEGQGSYTTHNLVCR 1648
++ R+ + ++ H V R
Sbjct: 565 TDLL-RIALMAEDEAIFEEAHKQVQR 589
Score = 46.8 bits (110), Expect = 7e-05
Identities = 60/457 (13%), Positives = 132/457 (28%), Gaps = 153/457 (33%)
Query: 1363 FKIGSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQ--ITT--VDEIYVEQNETG 1418
F+ G H Y+ +V + F + + + ++ +D I + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDA--FV----DNFDCKDVQDMPKSILSKEEIDHIIMSKDA-- 60
Query: 1419 SILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTE------EWI-- 1470
++ F L+ + +E+V + V E +++
Sbjct: 61 -----VSGTLRLF--------WT------LLSKQEEMVQK-----FVEEVLRINYKFLMS 96
Query: 1471 RLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRN--RELP-LQLKAVMCV 1527
++ + + Y + R + +V N R P L+L+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDN----------QVFAKYNVSRLQPYLKLRQALL- 145
Query: 1528 TGNKVELR--ADILV---PGF--------VSRKLGQIPCEDIMVRFPIPECWIYLFRVEK 1574
ELR ++L+ G V + + W+
Sbjct: 146 -----ELRPAKNVLIDGVLGSGKTWVALDVCLS------YKVQCKMDFKIFWL------- 187
Query: 1575 HFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPK 1634
++K+ + ++ +++ L ++P + S + + SI + RL K
Sbjct: 188 -----NLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 1635 EGQGSYTTHNLV----------------CRMALTSYD-QIPDDLHTICQYAYVEFTMPAT 1677
Y LV C++ LT+ Q+ D L ++
Sbjct: 240 SKP--YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA---TTTHISLDHH 294
Query: 1678 QVSHTTVRSVSI-----SNSDSDVPPE-------------KYVR-HLARHEYRVGIEHTQ 1718
++ T S+ D+P E + +R LA + +H
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVN 351
Query: 1719 GEGPGDYIAATIKSTPPPIM------------ETPIP 1743
+ I +++ P IP
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 38.7 bits (89), Expect = 0.021
Identities = 55/418 (13%), Positives = 117/418 (27%), Gaps = 120/418 (28%)
Query: 697 HSPSPTPDVQHQNLMGDEDITPIFPQTVSEP---NHVKSVTRNLM-----DDLENSPSIP 748
H T + Q+Q +DI +F + V+ + ++++ D + S
Sbjct: 6 HMDFETGEHQYQY----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 749 TEPPKLPPTIPAEPPK-----LPPSVPSEPPKLPPSIPSEPPKIPPSIPTE--------- 794
+ +L T+ ++ + + + L I +E PS+ T
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRL 119
Query: 795 ---PPKIPP---QRP-PVPPI--------PEPKVA--------PSVPARPA--PPKILDN 829
R P + P V + A K+
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 830 KEPPI---------IPRD--------SSDLTYNTSTPSSRKASITNP-----EAPRKYSK 867
+ I P + N ++ S ++I R+ K
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 868 EN-------VIDN--DVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVAP 918
V+ N + NA N + ++T+R + SA+ + S +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQ--VTDFLSAATTTHISLDHHS 295
Query: 919 DVFSQQITSTNIIENYT-----------TDSSPFIEDHATAV------NHEATAEPIQH- 960
+ +++ Y ++P ++ + AT + +H
Sbjct: 296 MTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPR----RLSIIAESIRDGLATWDNWKHV 350
Query: 961 TADQFMNLFGTSIGKNEPE---TAFMNQDDTFGIQPAATDFPEQTISQDTLFSQPPTE 1015
D+ + +S+ EP F D + P + P +S ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAHIPTILLS--LIWFDVIKS 402
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 57.0 bits (137), Expect = 8e-09
Identities = 22/121 (18%), Positives = 37/121 (30%)
Query: 720 FPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPS 779
Q + P + ++ ++ + P +PP P P P+ P P E P +
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Query: 780 IPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDS 839
+P P + + PV P + PAR P+ S
Sbjct: 82 PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVAS 141
Query: 840 S 840
Sbjct: 142 G 142
Score = 52.4 bits (125), Expect = 3e-07
Identities = 18/115 (15%), Positives = 37/115 (32%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPE 810
P + P L P +PP P P P+ P P E P + + P P
Sbjct: 31 PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 90
Query: 811 PKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKY 865
V K ++++ + +++ ++ +T+ + +
Sbjct: 91 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 50.9 bits (121), Expect = 9e-07
Identities = 24/119 (20%), Positives = 38/119 (31%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
+P + T+ PP PP+ EP IP P I +P
Sbjct: 26 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 85
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P P+P + + P + LT +T+T ++ K + PR
Sbjct: 86 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPR 144
Score = 50.5 bits (120), Expect = 1e-06
Identities = 20/117 (17%), Positives = 36/117 (30%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
S+ P A P P V EP P P + + P PK P+
Sbjct: 34 PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 93
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPE 860
+ V +RPA P ++ + ++ +S +++ +
Sbjct: 94 KKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150
Score = 50.5 bits (120), Expect = 1e-06
Identities = 20/107 (18%), Positives = 36/107 (33%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
I P P ++ P + P P + EP P P + + ++P
Sbjct: 24 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSS 851
P P+PK V +P P +++ +ST ++
Sbjct: 84 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130
Score = 50.5 bits (120), Expect = 1e-06
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 2/121 (1%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+P+ P + P P + P P EP P P P+ P P K P+
Sbjct: 30 APAQPISVTMVTPADLEPPQAVQP--PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 87
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P P + + P + T +T + + P A
Sbjct: 88 PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALS 147
Query: 864 K 864
+
Sbjct: 148 R 148
Score = 49.3 bits (117), Expect = 3e-06
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 1/121 (0%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPT-EPPKIPPQR 802
+ I P + + PP EP P IP P + P I +P P +
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 803 PPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAP 862
P +PK + + ++ T T + + P
Sbjct: 92 PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQP 151
Query: 863 R 863
+
Sbjct: 152 Q 152
Score = 42.8 bits (100), Expect = 4e-04
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEP 811
P+ + +LP P++P + P++ P P + P+ P P P
Sbjct: 15 PRGSHMSVHQVIELPA--PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP 72
Query: 812 KVAPSVPARPAPPKILDNKEPPIIP 836
K AP V +P P K +
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQ 97
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 51.9 bits (123), Expect = 2e-06
Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 6/201 (2%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
+ + T A+ + + + P+ E
Sbjct: 30 SGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPA-SNEAATTETA 88
Query: 802 RPPVPPIPEPKVAPSVPARPAP-PKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPE 860
PE K + V P+ K +KE P ++ + +
Sbjct: 89 EAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ----GDESKPAAEANKTEK 144
Query: 861 APRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVAPDV 920
+ +N + NS + + I R + SR+ + V
Sbjct: 145 EVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKA 204
Query: 921 FSQQITSTNIIENYTTDSSPF 941
+ N
Sbjct: 205 SKEAKVQALSNTNSKAKDHAS 225
Score = 45.3 bits (106), Expect = 2e-04
Identities = 24/233 (10%), Positives = 45/233 (19%), Gaps = 10/233 (4%)
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
LEN E P A S SE +E E
Sbjct: 12 HQLENLYFQGEETAV-PENSGANTEL--VSGESEHSTNEADKQNEGEH-----ARENKLE 63
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITN 858
+ + K ++ + P S K +
Sbjct: 64 KAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAK 123
Query: 859 PEAPRKYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVAP 918
PEA + + + + T + + + E
Sbjct: 124 PEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDA 183
Query: 919 DVFSQQITSTNIIENYT--TDSSPFIEDHATAVNHEATAEPIQHTADQFMNLF 969
+ ++ + S + N +A + F
Sbjct: 184 INRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEEFKAYAF 236
Score = 32.6 bits (73), Expect = 1.3
Identities = 16/121 (13%), Positives = 30/121 (24%)
Query: 74 HDDLEQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGTDKPAPR 133
H QL+ + + P G+ T + + + T + Q + A
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67
Query: 134 LEDLPLKFEEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVD 193
+ ++ E E E + + D E E E
Sbjct: 68 VATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT 127
Query: 194 E 194
Sbjct: 128 N 128
Score = 31.1 bits (69), Expect = 3.9
Identities = 21/161 (13%), Positives = 44/161 (27%)
Query: 89 KPPGPSEYGSETSKGNTKEQAWTEFEEGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDE 148
G SE+ + + + + E + + + A+ T PA E +
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK 95
Query: 149 EFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVDEDIFDTAFVDLVTTE 208
E+ E + + KP E DE + +E ++ + TE
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTE 155
Query: 209 DLHLAYIPDSPIEKDDGPDPFDTSIVDKVIKPESEKERKRK 249
++ D + + +R
Sbjct: 156 KTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 50.7 bits (121), Expect = 3e-06
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+PS K + + + + P + PP PP+ P P PPQ
Sbjct: 363 APSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY--PPQGYPPQGYPPQGYPPQGY 420
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNK 830
P PP P P APP+ +DN+
Sbjct: 421 PPPPQGAP---PQGAPPAAPPQGVDNQ 444
Score = 44.5 bits (105), Expect = 2e-04
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 739 DDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI 798
+ E+ TE P + A P + E + + + PP PP+
Sbjct: 342 KETEDDKDAETEIPAGESSDAA--PSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSD 841
P + P P+ P P P PP P D
Sbjct: 400 YPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
Score = 37.2 bits (86), Expect = 0.045
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 717 TPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAE--PPKLPPSVPSEPP 774
P + + P+ + + +M ++ P P + PP+ P P
Sbjct: 354 IPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQ 413
Query: 775 KLPP-SIPSEPPKIPPSIPTEPPKIPPQ 801
PP P P PP PP PPQ
Sbjct: 414 GYPPQGYPPPPQGAPPQ--GAPPAAPPQ 439
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 46.6 bits (110), Expect = 3e-05
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
PS P+ T+ A S+ P + PP PP + P PP
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
Query: 805 VPPIPEPKVAP--SVPARPAPP 824
P P + P P PP
Sbjct: 197 PPMGPPMGIPPGRGTPMGMPPP 218
Score = 45.8 bits (108), Expect = 4e-05
Identities = 16/79 (20%), Positives = 22/79 (27%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
++ +I P + PP PP + P PP P P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Query: 803 PPVPPIPEPKVAPSVPARP 821
PP P P + P
Sbjct: 206 PPGRGTPMGMPPPGMRPPP 224
Score = 41.9 bits (98), Expect = 7e-04
Identities = 13/83 (15%), Positives = 19/83 (22%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L P + T + + P + P P PP
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP 186
Query: 801 QRPPVPPIPEPKVAPSVPARPAP 823
PP P + P + P
Sbjct: 187 GMMGPPPGMRPPMGPPMGIPPGR 209
Score = 41.9 bits (98), Expect = 0.001
Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 751 PPKLPPTIPAEPPKL--PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
P P A P + PS P+ ++ + SI P + PP R PP
Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP 178
Query: 809 PEPKVAPSVPARPAPPKILDNKEPPIIP 836
P P P P IP
Sbjct: 179 MGRGAPPPGMMGPPPGMRPPMGPPMGIP 206
Score = 40.0 bits (93), Expect = 0.003
Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKI-PPQRPPVP 806
A P + P P PP + PP + PP PP+
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 807 PIP---EPKVAPSVPARPAPP 824
P P P RP PP
Sbjct: 205 IPPGRGTPMGMPPPGMRPPPP 225
Score = 36.2 bits (83), Expect = 0.072
Identities = 12/81 (14%), Positives = 17/81 (20%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P P++ P + + S P PP
Sbjct: 122 QAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Query: 804 PVPPIPEPKVAPSVPARPAPP 824
PP P + PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPP 202
Score = 33.5 bits (76), Expect = 0.42
Identities = 10/93 (10%), Positives = 15/93 (16%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P P +P P P + +
Sbjct: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
I PP + PP +
Sbjct: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Score = 32.3 bits (73), Expect = 1.0
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
P PP + P PP P P IP P +P + PP
Sbjct: 170 PGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP-GRGTPMGMPPPGMRPPPP 225
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 43.6 bits (102), Expect = 4e-04
Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 4/100 (4%)
Query: 768 SVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKIL 827
S +P + PS PP+ P AP P PA
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 828 DNK----EPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
D I R + + P+ R PEAP
Sbjct: 63 DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPA 102
Score = 42.8 bits (100), Expect = 8e-04
Identities = 14/79 (17%), Positives = 18/79 (22%)
Query: 746 SIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPV 805
S +P + PS PP P PP P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 806 PPIPEPKVAPSVPARPAPP 824
+ V + P P
Sbjct: 63 DTVTGDSVLQRILRGPTGP 81
Score = 41.3 bits (96), Expect = 0.002
Identities = 18/86 (20%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIP--SEPPKIPPS---IPTEPPKI 798
+ S P T+P P PP P P ++ S +I T
Sbjct: 31 AASDFLAALHPPVTVPD-PAPPPPPAP-AAGNPPDTVTGDSVLQRILRGPTGPGTTSLAP 88
Query: 799 PPQRPPVPPIPEPKVAPSVPARPAPP 824
+ P P AP R P
Sbjct: 89 AVRYGRQPGPEAPASAPPAAGRAVPG 114
Score = 40.5 bits (94), Expect = 0.004
Identities = 14/86 (16%), Positives = 19/86 (22%), Gaps = 5/86 (5%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPS---EPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
+ + L P V PP P PP + +I
Sbjct: 17 RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG-DSVLQRIL 75
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPK 825
P P A +P P
Sbjct: 76 RG-PTGPGTTSLAPAVRYGRQPGPEA 100
Score = 39.0 bits (90), Expect = 0.015
Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 29/149 (19%)
Query: 676 SSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTR 735
SSH H++ I S S T + + + P V+ P+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTS-------AASDFLAALHP-PVTVPDPAPP--- 51
Query: 736 NLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
P P P T+ + + P + + P++
Sbjct: 52 --------PPPAPA-AGNPPDTVTG--DSVLQRILRGPTGPGTTSLA------PAVRYGR 94
Query: 796 PKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P PP V P + P P
Sbjct: 95 QPGPEAPASAPPAAGRAV-PGLYHHPVPE 122
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 42.7 bits (100), Expect = 6e-04
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P + P PA P PS+ +L ++ + + K PP P
Sbjct: 18 PVQRYIPQPQPPAPPR--RRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPK 75
Query: 808 IPEPKVAPSVPARPAPPK 825
+ P+ + P K
Sbjct: 76 KTQKPKKPTQKKKSKPGK 93
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 42.1 bits (98), Expect = 8e-04
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 6/135 (4%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPS---EPPKIPPSIPTEPPKIPPQRPP 804
PT + A P + S+ +L ++ + P + PP ++ P
Sbjct: 17 PTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAP 76
Query: 805 VPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTY---NTSTPSSRKASITNPEA 861
P K P + P K K + + +D + N A +
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIGHALAMEGKV 136
Query: 862 PRKYSKENVIDNDVL 876
+ + ID+ VL
Sbjct: 137 MKPLHVKGTIDHPVL 151
Score = 39.8 bits (92), Expect = 0.004
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P + ++ +L +V + + P+ PP + PK PP+
Sbjct: 25 RRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKK 84
Query: 805 VPPIPEPKVAPS----VPARPAPPKILDNKEPPIIPRDSSDLTYNTST------PSSRKA 854
P + K P+ + K+ ++ + D + + + P K
Sbjct: 85 PKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIGHALAMEGKVMKPLHVKG 144
Query: 855 SITNPE-APRKYSKENVID 872
+I +P + K++K + D
Sbjct: 145 TIDHPVLSKLKFTKSSAYD 163
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 43.3 bits (101), Expect = 9e-04
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
N+ + +PP PA + P PS+ + P+ +I
Sbjct: 19 NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ-QQFLTPAQEQLHQQIDQAT 77
Query: 803 PPVPPIPEPKVAPSVPARPAPP 824
+ + V P P
Sbjct: 78 TSMNDMHLHNVPLVDPNAYMQP 99
Score = 42.5 bits (99), Expect = 0.001
Identities = 11/80 (13%), Positives = 22/80 (27%)
Query: 745 PSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P + + + +PP P+ + P PS+ + P Q
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 805 VPPIPEPKVAPSVPARPAPP 824
I + + + P
Sbjct: 70 HQQIDQATTSMNDMHLHNVP 89
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 42.6 bits (98), Expect = 0.001
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 731 KSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEP-PKLPPSIPSEPPKIPP 789
VT P + P + S+ + P + E P PP
Sbjct: 396 NYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPT-PP 454
Query: 790 SIPTEPPKI-PPQRPPVPPIPEPKVAPSVPARPAPPKI 826
PT P K P+ P P P P +
Sbjct: 455 VKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492
Score = 40.3 bits (92), Expect = 0.005
Identities = 14/88 (15%), Positives = 25/88 (28%)
Query: 749 TEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
T + P + + P + S+ + + T+ PP +P P
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTK 462
Query: 809 PEPKVAPSVPARPAPPKILDNKEPPIIP 836
P + + P P PP
Sbjct: 463 PTYETEKPLKPAPVAPNYEKEPTPPTRL 490
Score = 34.9 bits (78), Expect = 0.27
Identities = 18/105 (17%), Positives = 26/105 (24%), Gaps = 3/105 (2%)
Query: 711 MGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPA-EPPKLPPSV 769
M + T + S + P L I A PK+
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450
Query: 770 PSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI-PEPKV 813
P+ P K P + P ++ P PP E
Sbjct: 451 PTPPVKPTAPTKPTYETEKP-LKPAPVAPNYEKEPTPPTRLEHHH 494
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQ 801
+ SP+ E PA ++P P +L P PP P P++ K
Sbjct: 1 DGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPP--PKHTPSKEVKQEQI 58
Query: 802 RPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEA 861
P+++ + P++PA + P T + SS ++
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Query: 862 P 862
P
Sbjct: 119 P 119
Score = 37.0 bits (84), Expect = 0.031
Identities = 18/127 (14%), Positives = 27/127 (21%), Gaps = 2/127 (1%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+ PK P + PP PP P P + E P +P
Sbjct: 21 GATPGATLPKSPSQLRKGPPVPPP--PKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQP 78
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P+ A+ +P + T + S
Sbjct: 79 AEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLP 138
Query: 864 KYSKENV 870
V
Sbjct: 139 PGFMFKV 145
Score = 36.6 bits (83), Expect = 0.047
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 2/121 (1%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLP--PSIPSEPPKIPPSIPTEPPKIPPQRPPVPPI 808
P P I P + LP PS + P +PP P K Q +
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 809 PEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSKE 868
+ V P+ P P + T+ + +S+ +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 869 N 869
N
Sbjct: 123 N 123
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/129 (15%), Positives = 29/129 (22%), Gaps = 2/129 (1%)
Query: 742 ENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPP--SIPSEPPKIPPSIPTEPPKIP 799
P T A PK P + PP PP PS+ K +
Sbjct: 8 PEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFV 67
Query: 800 PQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNP 859
P+ P + + + E SS L + T
Sbjct: 68 PEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127
Query: 860 EAPRKYSKE 868
+
Sbjct: 128 GGSGAGRLD 136
Score = 34.7 bits (78), Expect = 0.19
Identities = 25/125 (20%), Positives = 34/125 (27%), Gaps = 3/125 (2%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
+P I P A P P PS+ K PP P PPK PS + +I
Sbjct: 7 TPEIRVNHE-PEPAGGATPGATLPKSPSQLRKGPPVPP--PPKHTPSKEVKQEQILSLFE 63
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
PS PA + + + S+ T P
Sbjct: 64 DTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 123
Query: 864 KYSKE 868
+
Sbjct: 124 GTVEG 128
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 41.3 bits (95), Expect = 0.003
Identities = 21/191 (10%), Positives = 44/191 (23%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
P PA + S PP+ P PP+ +
Sbjct: 20 IAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSS 79
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPR 863
P P A P + +PP + T + ++A
Sbjct: 80 PSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139
Query: 864 KYSKENVIDNDVLIQNAINSRKSSQDVVTSRKSSQDIQRITSASQSRKASNEVAPDVFSQ 923
+ + + + + + + + +V ++F
Sbjct: 140 LKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFRS 199
Query: 924 QITSTNIIENY 934
T ++ N
Sbjct: 200 MDTIVGMLHNR 210
Score = 38.9 bits (89), Expect = 0.017
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 3/120 (2%)
Query: 748 PTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
P P+ P+ + S PP+ P PP R +
Sbjct: 13 RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 808 IPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITNPEAPRKYSK 867
+ +PS P P P P + S+ +S + T E +
Sbjct: 73 SVDEVSSPSTPEAPDIPA---CPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Score = 32.8 bits (73), Expect = 1.2
Identities = 28/207 (13%), Positives = 46/207 (22%), Gaps = 38/207 (18%)
Query: 634 DDLMDNKQDQTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPM 693
D ++ PR PP PS A R P+
Sbjct: 7 TDFFARRRPGPPRIAPPKLACRTPSPAR---------------------PALRAPASATS 45
Query: 694 RDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPK 753
P + L D +SPS P P
Sbjct: 46 GSRKRARPPA-----------------APGRDQARPPARRRLRLSVDEVSSPSTPEAPDI 88
Query: 754 LPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKV 813
P + K +PP L + + S ++ + + +
Sbjct: 89 PACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAG 148
Query: 814 APSVPARPAPPKILDNKEPPIIPRDSS 840
P P+ ++ P R +
Sbjct: 149 ESCTPEAEGRPEEPCGEKAPAYQRFHA 175
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 40.1 bits (93), Expect = 0.009
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 7/129 (5%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEP--PKIPPSIPTEPPKIPP 800
SPS P PT P+ P P P+ P P S P P P+ P P P
Sbjct: 1608 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667
Query: 801 QRPPVPP--IPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASITN 858
P P P +P+ P+ P P + Y+ +P+
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP---TSPGYSPGSPAYSPKQDEQ 1724
Query: 859 PEAPRKYSK 867
+ S+
Sbjct: 1725 KHNENENSR 1733
Score = 36.6 bits (84), Expect = 0.091
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
SP P PT P P P P+ P P S PS P P PT P P
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPS 1590
Query: 804 PVPPIPE-----PKVAPSVPA-RPAPPKILDNKEPPIIPRDS-SDLTYNTSTPSSRKASI 856
P P P +P+ P+ P P P P S + +Y+ ++PS S
Sbjct: 1591 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----SPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Query: 857 TNPEAPRKYS 866
+ YS
Sbjct: 1646 SYSPTSPSYS 1655
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 39.5 bits (91), Expect = 0.010
Identities = 23/218 (10%), Positives = 40/218 (18%), Gaps = 4/218 (1%)
Query: 609 SRKPSYQTTSALFYNLRHYPDASSKDDLMDNKQDQT-PRRPPPPRPVIPPSKETKDLILT 667
SR ++ + N + + +L+ ++ Q P P + L
Sbjct: 169 SRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEA 228
Query: 668 VTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEP 727
+ R T P
Sbjct: 229 PLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGP 288
Query: 728 NHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKI 787
+ + P P P + P P + P
Sbjct: 289 GSSGTWNPGRPEPGSAGTWNPGRPE--PGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTW 346
Query: 788 PPSIPT-EPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
P P P + RP+ P
Sbjct: 347 NPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSP 384
Score = 36.0 bits (82), Expect = 0.11
Identities = 30/193 (15%), Positives = 47/193 (24%), Gaps = 11/193 (5%)
Query: 672 MEATSSHLDRCHAARTPSPTPMRDIH--SPSPTPDVQHQNLMGDEDITPIFPQTVSEPNH 729
+ L++ A ++ + S + P+ + + E
Sbjct: 181 YKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQ 240
Query: 730 VKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPP 789
K V + + + P P K P + P P
Sbjct: 241 TKMVLETFG---GDGHARGDSVSQGTGLAPGSPRK-PGTSSIGNVNPGSYGPGSSGTWNP 296
Query: 790 SIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTP 849
P P P P P + P RP P P P S T+N P
Sbjct: 297 GRP--EPGSAGTWNPGRPEPGSAGTWN-PGRPEPGS--AGTWNPGRPEPGSAGTWNPGRP 351
Query: 850 SSRKASITNPEAP 862
A N +
Sbjct: 352 EPGSAGTWNTGSS 364
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 38.3 bits (88), Expect = 0.022
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 1/66 (1%)
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVP-PIPEPKVAPSV 817
LP S P+ + + P +P P + AP
Sbjct: 312 AVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVE 371
Query: 818 PARPAP 823
PAP
Sbjct: 372 EVAPAP 377
Score = 32.5 bits (73), Expect = 1.2
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPP 800
L + P P A P + P P + P+ + P EP
Sbjct: 308 LYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA------AAEPGAAEA 361
Query: 801 QRPPVPPIPEPKVAPS 816
V P P +VAP+
Sbjct: 362 A-GSVEPAPVEEVAPA 376
>2c36_A Glycoprotein D HSV-1; viral protein, immunoglobulin-like,
transmembrane; HET: NAG MAN BMA NDG; 2.11A {Human
herpesvirus 1} PDB: 2c3a_A* 3sku_A* 3u82_A 1l2g_A*
1jma_A*
Length = 285
Score = 37.2 bits (85), Expect = 0.033
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 683 HAARTPSPTPMRDIHSPS---PTPDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMD 739
H A+ + PS Q + + P F V S+
Sbjct: 161 HRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIA--- 217
Query: 740 DLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
PK P T PP+L + + P+L P P + + + T P+IP
Sbjct: 218 --------GWHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGTVAPQIP 269
Query: 800 PQR 802
P
Sbjct: 270 PNW 272
Score = 31.1 bits (69), Expect = 3.3
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 772 EPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAP---PKILD 828
PK P + PP++ + P++ P+ P + E V P P P I D
Sbjct: 220 HGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGTVAPQIPPNWHIPSIQD 279
Query: 829 NKEP 832
P
Sbjct: 280 AATP 283
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 37.8 bits (87), Expect = 0.037
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 6/139 (4%)
Query: 726 EPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPP 785
+HV + + +S + PT P+ P L P + S P +L I +
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRG--SMAAPSLHPSLGPGIGS-PGQLHSPISTLSS 61
Query: 786 KIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYN 845
I P P P +P P++ P++ P D
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVPTT---PTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 846 TSTPSSRKASITNPEAPRK 864
N + K
Sbjct: 119 NGVLKVPAHPSGNMASFTK 137
Score = 33.2 bits (75), Expect = 0.99
Identities = 24/145 (16%), Positives = 37/145 (25%), Gaps = 18/145 (12%)
Query: 671 HMEATSSHLDRCHAARTPSPTPMRDIHSPSPTPDVQHQNLMGDEDITPIFPQTVSEPNHV 730
H++ + SPT + +PS P + + P +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGP---------------GIGSPGQL 52
Query: 731 KSVTRNLMDDLEN-SPSIPTEPPKLPPTIPAEP--PKLPPSVPSEPPKLPPSIPSEPPKI 787
S L + P + P + P P L S S P + S I
Sbjct: 53 HSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDI 112
Query: 788 PPSIPTEPPKIPPQRPPVPPIPEPK 812
P + P P K
Sbjct: 113 KPPLGLNGVLKVPAHPSGNMASFTK 137
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 37.2 bits (86), Expect = 0.055
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 767 PSVPSEP--PKLPPSIPS---EPPKIPPSIPTEPPKIPPQRP--PVPPIPEPKVAPSVPA 819
P+ P+ P P + + + P P P P+ P P P A
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 820 RPAPPKILDNKEPPIIPRDSSDLTYNTSTPSS 851
A + I +++D + P +
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPT 93
Score = 34.9 bits (80), Expect = 0.29
Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 6/87 (6%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
SP P P + P+ +P K PP+ P
Sbjct: 7 SPGTPGVAAATQAANGG-----PATPAPPALGAAPTGDPKPKKNKKPKNPTPPR-PAGDN 60
Query: 804 PVPPIPEPKVAPSVPARPAPPKILDNK 830
+ + A +
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFY 87
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 37.0 bits (86), Expect = 0.066
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
LP A LPP S+ +PP+ S P P + +E ++P
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMP 574
Score = 34.7 bits (80), Expect = 0.34
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPS----IPTEPPKIPPQRPPVPPI 808
LP + LPP S+ +PP+ PTEP + +P +
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMPVV 576
Score = 33.5 bits (77), Expect = 0.80
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 774 PKLPPSIPSEPPKIPPSIPTEPPKIPPQ----RPPVPPIPEPKVAP 815
LP + +PP ++ +PP P P + +VA
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQ 572
Score = 32.3 bits (74), Expect = 1.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 745 PSIPT----EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIP 792
++PT LPP ++ +PP+ S P P + SE ++P I
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMPVVIG 578
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 36.4 bits (85), Expect = 0.070
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 748 PTEPPKLPPTIPAEPPKL-PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
P PP P P P P V E P P P PP+ P+IP R P
Sbjct: 2 PQLPPA-PDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSK--AAAPRIPADRLP 56
Score = 34.1 bits (79), Expect = 0.36
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 774 PKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPP 833
P+LPP+ P + P P + P + P+ P P P P ++ A P+I ++
Sbjct: 2 PQLPPA-PDDYPTFPD--TSTWPVVFPELPAAPY-GGPCRPPQHTSKAAAPRIPADR--- 54
Query: 834 IIPR 837
+P
Sbjct: 55 -LPN 57
Score = 31.8 bits (73), Expect = 2.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPA 822
P+LPP+ P + P P S P + P +P P P P P AP +PA
Sbjct: 2 PQLPPA-PDDYPTFPD--TSTWPVVFPELPAAPYGGP--CRP-PQHTSKAAAPRIPADRL 55
Query: 823 P 823
P
Sbjct: 56 P 56
Score = 30.3 bits (69), Expect = 5.0
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 785 PKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDS 839
P++PP+ P PV P P RP P IP D
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHT--SKAAAPRIPADR 54
Score = 30.3 bits (69), Expect = 5.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 745 PSIPTEPPKLPPTI--PAEPPKLPPSVPSEPPKLPPSIPSE--PPKIPPS-IP 792
P P + P P T P P+LP + P + PP S+ P+IP +P
Sbjct: 5 PPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCR-PPQHTSKAAAPRIPADRLP 56
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 37.0 bits (85), Expect = 0.073
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP--PQ 801
SPS P PT P+ P P P+ P P+ PS P P PT P P P
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
Query: 802 RPPVPPIPEPKVAPSVPARPA 822
P P P P P+
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPS 1717
Score = 36.2 bits (83), Expect = 0.12
Identities = 36/128 (28%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
SPS P PT P+ P P P+ P P+ PS P P PT P P
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPT-SPSYSPTS 1673
Query: 803 PPVPPIPEPKVAPSVPAR-PAPPKILDN--KEPPIIPRDS-SDLTYNTSTPSSRKASITN 858
P P P +P+ P+ P P P P S + +Y+ ++PS S +
Sbjct: 1674 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 859 PEAPRKYS 866
YS
Sbjct: 1733 SPTSPSYS 1740
Score = 35.1 bits (80), Expect = 0.29
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEP------PKLPPSIPSEPPKIPPSIPTEPP 796
+SPS P PT P+ P P P+ P P P+ PS P P PT P
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPS 1633
Query: 797 KIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKASI 856
P P P +P+ P+ P P + +Y+ ++PS S
Sbjct: 1634 YSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSP 1688
Query: 857 T-NPEAP 862
+ +P +P
Sbjct: 1689 SYSPTSP 1695
Score = 34.3 bits (78), Expect = 0.44
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP--P 800
SPS P PT P+ P P P+ P P S PS P P PT P P P
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSP 1730
Query: 801 QRPPVPPIPEPKVAPSVPARPA 822
P P P P P+
Sbjct: 1731 SYSPTSPSYSPTSPSYSPTSPS 1752
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 34.8 bits (79), Expect = 0.23
Identities = 10/94 (10%), Positives = 19/94 (20%)
Query: 760 AEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPA 819
+ +PP PPS S + + P P P +
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77
Query: 820 RPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRK 853
+ + S + +
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGG 111
Score = 34.4 bits (78), Expect = 0.34
Identities = 19/132 (14%), Positives = 26/132 (19%), Gaps = 12/132 (9%)
Query: 736 NLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEP 795
N M +L N + P +PP PPS S + S + P
Sbjct: 13 NFMANLPNGYMTDLQRP--------QPPPPPPSAASPGATPGSAAASAERASTAAPVASP 64
Query: 796 PKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYNTSTPSSRKAS 855
P A + S +
Sbjct: 65 AAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFS----EQVGGGSGGAGRGGAAARVLLVI 120
Query: 856 ITNPEAPRKYSK 867
KY K
Sbjct: 121 DEPHTDWAKYFK 132
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.39
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 19 KEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEW--------QKFKALTAGVDSIL 70
K EE + L + + E+E +A + +EW +K K D
Sbjct: 89 KWREEQR-KRLQELDAASKVMEQEWREKAKKD--LEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 71 KKTHDD 76
+ D
Sbjct: 146 YQQPDA 151
Score = 33.2 bits (75), Expect = 0.46
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 28/104 (26%)
Query: 20 EEEEFDAE-ELAKYRREHQAKE-EEAGAEASSEGKSDEWQKFKALTAGVDSILKKTHDDL 77
+ + E E + RE Q K +E A S+ EW+ +K DL
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAA--SKVMEQEWR-------------EKAKKDL 120
Query: 78 EQLKQTSYFQRKPPGPSEYGSETSKGNTKEQAWTEFEEGQESTL 121
E+ ++ E + N F + ++ +
Sbjct: 121 EEW----NQRQS-----EQVEKNKINNRIADK--AFYQQPDADI 153
Score = 31.3 bits (70), Expect = 2.0
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 7 LKKK---RKGKKNKHKEEEEFDAEELAKYRREHQAK--------EEEAGAEASSE 50
L++ K + + +E+ + D EE + + E K ++ + ++
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.45
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 14/38 (36%)
Query: 923 QQITSTNIIEN----YTTDSSPFIEDHATAVNHEATAE 956
Q + ++ Y DS+P + A+ AT E
Sbjct: 20 QALKK---LQASLKLYADDSAPAL-----AIK--ATME 47
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 34.2 bits (78), Expect = 0.47
Identities = 24/194 (12%), Positives = 37/194 (19%), Gaps = 22/194 (11%)
Query: 643 QTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPT 702
P + P P+I + KD V C PT +
Sbjct: 129 SAPTKAPDVFPIISGCRHPKDNSPVVLA-----------C-LITGYHPTSVTVTWYMGTQ 176
Query: 703 PDVQHQ---NLMGDEDITPIFPQTVSEPN-HVKSVTRNLMDDLENSPSIPTEPPKLPPTI 758
Q D + + S P+ P
Sbjct: 177 SQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQ 236
Query: 759 PAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPS----IPTEPPKIPPQRPPVPPIPEPKVA 814
+ P P K + + E + + P P
Sbjct: 237 ASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQP 296
Query: 815 PSVPARPAPPKILD 828
V P + D
Sbjct: 297 LGV--YLLTPAVQD 308
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 32.2 bits (72), Expect = 0.56
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 777 PPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVP 818
P P PT P PP P +P P V P+
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
Score = 32.2 bits (72), Expect = 0.58
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 758 IPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPV 805
+ + P+ P P P + P PP P PP + P
Sbjct: 89 VKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQC 136
Score = 31.8 bits (71), Expect = 0.78
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 747 IPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIP 792
+ + P P P P + P PP P PP + P+
Sbjct: 89 VKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 33.5 bits (77), Expect = 0.80
Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 7/96 (7%)
Query: 750 EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
E + SE K PP PP P++ Q P
Sbjct: 6 REQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTA 65
Query: 810 EPKVAPSVPARPAPPKILDNKEPPIIPRDSSDLTYN 845
P + +LD E L
Sbjct: 66 VEGTLPPL-------SLLDPAEVKQKSYSPESLEAM 94
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical
bundle, vesicular transport, tethering, protein
transport; NMR {Saccharomyces cerevisiae}
Length = 204
Score = 32.4 bits (73), Expect = 0.92
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 294 DEQSPRAAELENVSNTLEEPVKTLLDEDNENLPDSPVDVADTLSILQKINET-------V 346
DE++ LE + L++ + L +++ ++ + D L L+K++E
Sbjct: 40 DEENETLINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNHS 99
Query: 347 QAAQLPQVEKKATPILEKFGIDELIDDELIDGETDEFAALATESLAKSPLKAHNNFEGIK 406
Q + + K+ + L + E +++E+ G ++ L T + E
Sbjct: 100 QLTEALSLGKRLSKSLHEMCGIEPLEEEICSGLIEQLYKLIT--------ASRRILESC- 150
Query: 407 PQRPPPPSVLNIQNDLGDPEDPFDTSFAEKVLPGKCELKLIENEILGKDESELIQS 462
P + +++ND D F S K+L KC + L +I++
Sbjct: 151 -ADSNSPYIHHLRNDYQDLLQEFQISL--KILTEKCLENPSSLQNLSLTLVSIIKT 203
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 32.6 bits (73), Expect = 1.1
Identities = 9/98 (9%), Positives = 15/98 (15%), Gaps = 7/98 (7%)
Query: 727 PNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPK 786
P V D + + P + ++ P
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERT 285
Query: 787 IPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
+ P P AP
Sbjct: 286 RRSETESVNPVSTPASVEYHA-------GMKSLNKAPY 316
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 32.2 bits (72), Expect = 1.7
Identities = 12/72 (16%), Positives = 18/72 (25%)
Query: 744 SPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRP 803
S + + P + PSV + P + PT P
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 804 PVPPIPEPKVAP 815
P K +P
Sbjct: 61 FAVPTIHFKESP 72
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Erwinia
carotovora}
Length = 157
Score = 30.9 bits (69), Expect = 1.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 784 PPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPP 824
++P + P P IPE S+ A P P
Sbjct: 85 GIELPTDTAHGEQPVIPSAIPGLEIPEM-DDVSILATPMPD 124
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia
coli str}
Length = 264
Score = 31.5 bits (70), Expect = 2.4
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 714 EDITPIFPQTVSEPNHVKSVTRNLMDDLENSP---SIPTEPPKLPPTIPAEPPKLP---- 766
E +T + T+ SVT+ + D ++++ ++ P P + A+P + P
Sbjct: 103 ETVTNVQVSTLPLDQATVSVTKRVTDVVKDTRQHIAVVAGVPMSVPVVNAKPTRTPGVFH 162
Query: 767 PSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIP 809
S P P ++ P K P
Sbjct: 163 ASFPGVPSLTVSTVKGLPVSTTLPRGITEDKGRTAVPAGFTFG 205
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 31.0 bits (70), Expect = 4.0
Identities = 11/84 (13%), Positives = 16/84 (19%), Gaps = 5/84 (5%)
Query: 744 SPSIPT-EPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQR 802
P + L P + P PS P+ P +
Sbjct: 6 KPKDASQRRRSLEPA----ENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK 61
Query: 803 PPVPPIPEPKVAPSVPARPAPPKI 826
V A P +
Sbjct: 62 LFGGFNSSDTVTSPQRAGPLAGGV 85
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 31.0 bits (69), Expect = 4.2
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 7 LKKKRKGKKNKHKEEEEFDAEELAKYRREHQAKEEEAGAEASSEGKSDEWQKFKALTAGV 66
++K K K + K + E + L R + WQ+ + G
Sbjct: 56 YRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGY 115
Query: 67 DSILKKTHDDLEQLKQTSY-FQRK 89
+ L LE+L+ + F++K
Sbjct: 116 EEWLLNEIRRLERLEHLAEKFRQK 139
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 30.7 bits (68), Expect = 4.4
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 779 SIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIPRD 838
+P P + P P P + + + P + +N + + P
Sbjct: 201 GVPMSCPVVDAKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAG 260
Query: 839 SSDLTYNTSTPSSRKASITNPEA----PRKYSKENVIDNDVLIQNAINSRKSSQDVVTSR 894
T ++R A I P+ S +V+ D + Q + Q+ +
Sbjct: 261 F------TQGGNTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATH 314
Query: 895 KSSQDIQRITSASQSRKASNE 915
+ A +NE
Sbjct: 315 PVEAAERNYERARAELNQANE 335
Score = 30.0 bits (66), Expect = 8.2
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 714 EDITPIFPQTVSEPNHVKSVTRNLMDDLENSP---SIPTEPPKLPPTIPAEPPKLPPSVP 770
+DIT ++ +V ++DD+++ S+ + P P + A+P + P
Sbjct: 162 DDITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSCPVVDAKPTERPGVFT 221
Query: 771 SEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPP 807
+ P P S P P V P
Sbjct: 222 ASIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRP 258
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 30.8 bits (69), Expect = 4.4
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 1/78 (1%)
Query: 777 PPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDNKEPPIIP 836
PPS + + + + P RP P P L ++ +
Sbjct: 11 PPSQDLKDGTQEEATKRQEAPVDP-RPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69
Query: 837 RDSSDLTYNTSTPSSRKA 854
+ TP
Sbjct: 70 KPPLPPARTQGTPVHLNY 87
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 31.0 bits (70), Expect = 4.6
Identities = 6/60 (10%), Positives = 12/60 (20%)
Query: 766 PPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
P P+ P +P + + + +P K
Sbjct: 92 KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIK 151
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 30.7 bits (68), Expect = 4.9
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 773 PPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPK 825
+L P + S PP+ PP + P ++ +
Sbjct: 4 KAQLSNGYN--NPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGRR 54
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 30.6 bits (68), Expect = 5.2
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 121 LDEAAGTDKPAPRLEDLPLKFEEYDDDEEF--EEGQEPTLDEAAGTDKPAPRLEDLPLKF 178
++ + P ++ +E D E E + D +++L
Sbjct: 82 AEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDM 141
Query: 179 EEYDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAY 214
E ++DE ++ E + + DL++AY
Sbjct: 142 EIKEEDENDDTEEFNAKGGLAKDMAQERYYDLYIAY 177
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 30.5 bits (68), Expect = 5.3
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 751 PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPP 796
PT P P + L P+ + + P+ P + P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 30.2 bits (67), Expect = 5.9
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 779 SIPSEPPKIPPSIPTEPPK-IPPQRPPVPPIPEPKVAPSVPARPAPP 824
+I + P PT P + + P+ P P + P P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 30.2 bits (67), Expect = 6.8
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 775 KLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
+ P P + + P P P + P+ P +
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 29.8 bits (66), Expect = 8.4
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 757 TIPAEPPKLPPSVPSEP--PKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP 804
I A P P+ P P P EP + PS EP PP + P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEP--TPPVKTP 349
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 30.5 bits (69), Expect = 5.8
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 3/162 (1%)
Query: 176 LKFEEYDDDEEEEDSEVDEDIFDTAFVDLVTTEDLHLAY-IPDSPIEKDDGPDPFDTSIV 234
L ++Y+ DEE + E+ E+ + + T + L I + I FD
Sbjct: 10 LDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKS 69
Query: 235 DKVIKPESEKERKRKLISLGCAVDVLAGKVDKPVSPLPEHHESTPRRRPKPVDLLLGSFD 294
+ ++ K K +K L + + +L L D
Sbjct: 70 VNYLLQKASS--KAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKND 127
Query: 295 EQSPRAAELENVSNTLEEPVKTLLDEDNENLPDSPVDVADTL 336
E + + + N+ E + + + P V V +
Sbjct: 128 EPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIF 169
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 30.3 bits (68), Expect = 6.2
Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 23/149 (15%)
Query: 643 QTPRRPPPPRPVIPPSKETKDLILTVTGHMEATSSHLDRCHAARTPSPTPMRDIHSPSPT 702
+ + P P D VT + T +T P R I S P
Sbjct: 28 HSASKGLPLNHAALPP-TDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPD 86
Query: 703 PDVQHQNLMGDEDITPIFPQTVSEPNHVKSVTRNLMDDLENSPSIPTEPPKLPPTIPAEP 762
P + +S+ D + S + P + + EP
Sbjct: 87 P----------------------YTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
+ + +
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTF 153
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 30.1 bits (67), Expect = 7.6
Identities = 9/80 (11%), Positives = 20/80 (25%)
Query: 142 EEYDDDEEFEEGQEPTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEEEDSEVDEDIFDTAF 201
EEY + + + E + + E + D +D
Sbjct: 28 EEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHDGWDEEL 87
Query: 202 VDLVTTEDLHLAYIPDSPIE 221
V + ++ S +
Sbjct: 88 DIDVDNVPIQVSVFVQSAAK 107
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune
system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Length = 263
Score = 29.5 bits (67), Expect = 8.3
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 780 IPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARP 821
+ + P P + P +P P
Sbjct: 220 VEPAQGGRVSAGSQAQRSCLDASRLCSPSPGQQGRPRLPLHP 261
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 29.7 bits (66), Expect = 8.6
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 775 KLPPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAPPKILDN 829
+L P + + + + + + +V + P K LD+
Sbjct: 50 ELNKIDPLRELEQHLNAGSRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPYKTLDD 104
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Length = 146
Score = 28.7 bits (64), Expect = 9.2
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 1424 IARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGR 1458
I + F G P +E+ V ++ +G VV +
Sbjct: 54 IEQAIAFNAVLFEGFPRLEVVVENVTVEGDNVVVQ 88
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 29.9 bits (66), Expect = 9.5
Identities = 15/91 (16%), Positives = 21/91 (23%), Gaps = 9/91 (9%)
Query: 743 NSPSIPTEPPKLPPTIPAEPPKLPPSVPSEP--------PKLPPSIPSEPPKIPPSIPTE 794
+ S + P P + P+ P P
Sbjct: 34 SGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQR 93
Query: 795 PPKIPPQRPP-VPPIPEPKVAPSVPARPAPP 824
P +RP P VAP+ P P
Sbjct: 94 PAVASRRRPTTAGAAPLTAVAPAHDTPPVPD 124
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 29.7 bits (66), Expect = 9.8
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 732 SVTRNLMDDLENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
R +D + P+ + P EP K P S + + + P +PP +
Sbjct: 440 CTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRI-NSFEEHVASTSAALPSCLPPEV 498
Query: 792 PTEPPK 797
PT+ P
Sbjct: 499 PTQLPG 504
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.132 0.382
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,974,203
Number of extensions: 1705335
Number of successful extensions: 4308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3844
Number of HSP's successfully gapped: 226
Length of query: 1753
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1646
Effective length of database: 3,714,246
Effective search space: 6113648916
Effective search space used: 6113648916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.2 bits)