RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5848
(1753 letters)
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
(ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 277
Score = 166 bits (421), Expect = 2e-46
Identities = 63/321 (19%), Positives = 122/321 (38%), Gaps = 59/321 (18%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 4 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 63
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVR 1510
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 64 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRT- 121
Query: 1511 PPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYL 1569
++ LP ++ ++ K+E++ I S + + I VR P P
Sbjct: 122 -TKDIILPFRVIPLVREVGRTKLEVKVVI-----KSNFKPSLLAQKIEVRIPTPLN---- 171
Query: 1570 FRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629
++ + G++KY+ +IVW++
Sbjct: 172 -------------------------------TSGVQ---VICMKGKAKYKASENAIVWKI 197
Query: 1630 PRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSI 1689
R+ + + L + + F +P S VR + +
Sbjct: 198 KRMA-----GMKESQISAEIELLPTNDKKKWAR---PPISMNFEVPFA-PSGLKVRYLKV 248
Query: 1690 SNSD---SDVPPEKYVRHLAR 1707
SD K+VR++ R
Sbjct: 249 FEPKLNYSDHDVIKWVRYIGR 269
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 36.2 bits (82), Expect = 0.045
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 752 PKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIP 799
LP A LPP S+ +PP+ S P P + +E ++P
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMP 574
Score = 31.2 bits (69), Expect = 1.2
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 763 PKLPPSVPSEPPKLPPSIPSEPPKIPPSIPTEPPKIPPQRPP-VPPIP 809
LP + LPP S+ +PP+ + P P V +P
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMP 574
Score = 29.6 bits (65), Expect = 4.5
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 774 PKLPPSIPSEPPKIPPSIPTEPPKIPP----QRPPVPPIPEPKVAP 815
LP + +PP ++ +PP P P + +VA
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQ 572
Score = 29.2 bits (64), Expect = 5.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 745 PSIPTE----PPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI 791
++PT LPP ++ +PP+ S P P + SE ++P I
Sbjct: 527 QALPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMPVVI 577
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 31.8 bits (72), Expect = 0.27
Identities = 13/43 (30%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 781 PSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVPARPAP 823
P P P P PP PP P PE V P
Sbjct: 94 SPSAPAAPVPTPICPTTTPPPPPP--PSPEAHVPPPYVEPTTT 134
Score = 30.6 bits (69), Expect = 0.82
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 777 PPSIPSEPPKIPPSIPTEPPKIPPQRPPVPPIPEPKVAPSVP 818
PS P+ P P T PP PP P +P P V P+
Sbjct: 94 SPSAPAAPVPTPICPTTTPPPPPPP-SPEAHVPPPYVEPTTT 134
Score = 28.7 bits (64), Expect = 3.0
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 755 PPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSI-PTEP 795
P+ PA P P P+ P PP E PP + PT
Sbjct: 94 SPSAPA-APVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
Score = 27.5 bits (61), Expect = 8.0
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 741 LENSPSIPTEPPKLPPTIPAEPPKLPPSVPSEPPKLPPSIPSEPPKIPPSIP 792
++N S +P I P PP P P+ +P PP + P+
Sbjct: 89 VKNQVSPSAPAAPVPTPIC--PTTTPPPPPPPSPE--AHVP--PPYVEPTTT 134
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 29.2 bits (64), Expect = 2.3
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 1221 GW---EMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCY 1277
GW + K+ R WK+++V + H + + Q + + C
Sbjct: 5 GWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACL 64
Query: 1278 SVSEIGAQQYDNFGKIFTVKLQFIF 1302
+ N ++ T + +F
Sbjct: 65 IDISYSETKRKNVFRLTTSDCECLF 89
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 28.3 bits (63), Expect = 4.1
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 1445 VNDLVRQGKEVV---GRHDIIPVVTEEWIRLEGVEFHSCVQQDEYE-KGRTIKFKPPDA- 1499
+ L ++ ++ R + EW R G+EF++ + E + + A
Sbjct: 30 LKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEERDHQGFSRKLKAD 89
Query: 1500 CYIE 1503
+I+
Sbjct: 90 LFID 93
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor,
TetR) {Escherichia coli [TaxId: 562]}
Length = 138
Score = 28.4 bits (63), Expect = 4.4
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 109 AWTEFEEGQESTLDEAAGTDKPAPRLEDLPLKFEEYDDDEEFEEGQEPTLD 159
+ E T AA + P L + + D ++ F G E +
Sbjct: 78 VLEQQEHTAALTDRPAAPDENLPPLLREALQIMDSDDGEQAFLHGLESLIR 128
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
{Escherichia coli [TaxId: 562]}
Length = 439
Score = 28.9 bits (65), Expect = 6.4
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 602 VNGTEENSRKPSYQTTSALFYNL-----RHYPDASSKDDLMD 638
+ E + P+ LF L R+Y D + DL D
Sbjct: 370 LTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLAD 411
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 28.6 bits (63), Expect = 9.0
Identities = 55/379 (14%), Positives = 111/379 (29%), Gaps = 27/379 (7%)
Query: 127 TDKPAPRLEDLPLKFEEYDDDEEFEE---GQEPTLDEAAGTDKPAPRLEDLPLKFEEYDD 183
D L +P++ + DEE+ E G++ T G D E++ E
Sbjct: 134 LDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPG 193
Query: 184 DEEEEDSEVDEDIFDTAFVDLVTTEDLHLAYIPDSPIEKDDGPDPFDTSIVDKVIKPESE 243
D V+ V E L + +EK+ + + + +E
Sbjct: 194 VVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAE 253
Query: 244 KERKRKLISLGCAVDVLAGKVDKPVSPLPEHHESTPRRRPKPVDLLLGSFDEQSPRAAEL 303
+E +L L ++ + D+PV+ TP L E + L
Sbjct: 254 EEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTP----------LVVHGEIVEKGQPL 303
Query: 304 ENVSNTLEEPVKTLLDEDNENLPDSPVDVADTLSILQKINETVQAAQLPQVEKKATPILE 363
L P + + V + L + + VQ ++
Sbjct: 304 AEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQ---------PHMNVVV 354
Query: 364 KFGIDELIDDELIDGETDEFAALATESLAKSPLKAHNNFEGIKPQRPPPPSVLNIQNDLG 423
G D+++ E +A + + P V D
Sbjct: 355 PEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRV 414
Query: 424 DPED-PFDTSFAEKVLPGKCELKLIENEILGKDESELIQSERVKFDGKTIKYSGITIEIN 482
P D D + + G+ E+ L+ N + + ++ + + I+ +++
Sbjct: 415 APGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDI----DARMGAEAIQQLLKELDLE 470
Query: 483 NSINSKEENAEDTSNLKKD 501
E + S ++
Sbjct: 471 ALEKELLEEMKHPSRARRA 489
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 28.4 bits (63), Expect = 9.9
Identities = 23/175 (13%), Positives = 40/175 (22%), Gaps = 25/175 (14%)
Query: 1051 PFGGTSAFGDAGTLSSEQPSDVEGFGTDD---GFDAFLAMGPPPTPQCTPTPTPAKQRKT 1107
GT+ G + + + D +F + A+ +T
Sbjct: 9 DPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQT 68
Query: 1108 SADSDEDSDFNVFIRPQNFENNLQPNTALV---PPSLAPPPKSPAVPASQDSSPRFN-PF 1163
S + F FE P P + + R P
Sbjct: 69 PIHSFQAKRF--------FERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFP- 119
Query: 1164 DKGDVFAAPKENI-----FTQPDELNLTMQRTDSQETPPTPLFDEDVSQPLEDFP 1213
++ P + I NL R + + + L FP
Sbjct: 120 ----IYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGGTHTADLSRFP 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.132 0.382
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,567,305
Number of extensions: 331267
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 23
Length of query: 1753
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1655
Effective length of database: 1,062,056
Effective search space: 1757702680
Effective search space used: 1757702680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.2 bits)