Query psy5849
Match_columns 59
No_of_seqs 160 out of 1076
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 19:38:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 99.8 3.9E-19 8.4E-24 96.5 5.4 57 1-59 312-369 (489)
2 KOG0158|consensus 99.8 4.5E-19 9.8E-24 96.2 5.1 57 1-59 320-376 (499)
3 PLN02971 tryptophan N-hydroxyl 99.8 2.1E-18 4.6E-23 94.3 5.4 56 1-58 353-409 (543)
4 PLN02290 cytokinin trans-hydro 99.7 6.7E-18 1.5E-22 91.7 5.3 55 1-58 342-396 (516)
5 PLN02394 trans-cinnamate 4-mon 99.7 1E-17 2.2E-22 90.7 5.5 56 1-58 319-375 (503)
6 PLN02183 ferulate 5-hydroxylas 99.7 1.4E-17 2.9E-22 90.6 5.2 56 1-58 330-385 (516)
7 KOG0159|consensus 99.7 1.6E-17 3.4E-22 90.1 5.3 57 2-59 343-399 (519)
8 PLN02500 cytochrome P450 90B1 99.7 1.8E-17 4E-22 89.6 5.3 58 1-58 305-365 (490)
9 PTZ00404 cytochrome P450; Prov 99.7 1.1E-17 2.3E-22 90.3 4.0 57 1-59 309-366 (482)
10 PLN03234 cytochrome P450 83B1; 99.7 2.8E-17 6E-22 89.0 5.6 56 1-58 314-370 (499)
11 PLN02426 cytochrome P450, fami 99.7 4E-17 8.6E-22 88.8 5.9 57 1-58 319-375 (502)
12 PLN02738 carotene beta-ring hy 99.7 3.7E-17 7.9E-22 90.9 5.2 55 1-58 417-471 (633)
13 PLN02966 cytochrome P450 83A1 99.7 5.5E-17 1.2E-21 88.0 5.4 59 1-59 315-374 (502)
14 PLN02774 brassinosteroid-6-oxi 99.7 6.8E-17 1.5E-21 87.0 5.7 58 1-58 290-348 (463)
15 PF00067 p450: Cytochrome P450 99.7 2.3E-17 4.9E-22 86.9 3.2 56 1-58 288-344 (463)
16 PLN03195 fatty acid omega-hydr 99.7 7.9E-17 1.7E-21 87.6 5.2 58 1-58 318-393 (516)
17 PLN00168 Cytochrome P450; Prov 99.7 1.4E-16 3E-21 86.8 5.9 57 1-58 332-389 (519)
18 PLN03112 cytochrome P450 famil 99.7 8.5E-17 1.8E-21 87.4 4.9 56 1-58 322-378 (514)
19 KOG0157|consensus 99.7 1.3E-16 2.8E-21 86.9 5.6 58 1-59 317-374 (497)
20 PLN00110 flavonoid 3',5'-hydro 99.7 2E-16 4.3E-21 86.1 5.7 57 1-59 315-372 (504)
21 PLN02687 flavonoid 3'-monooxyg 99.7 2.3E-16 4.9E-21 85.9 5.8 57 1-59 323-380 (517)
22 PLN02936 epsilon-ring hydroxyl 99.7 3.6E-16 7.9E-21 84.8 5.5 54 1-57 304-357 (489)
23 PLN03018 homomethionine N-hydr 99.7 4.2E-16 9.1E-21 85.4 5.7 56 1-58 340-396 (534)
24 PLN02169 fatty acid (omega-1)- 99.7 2.5E-16 5.5E-21 85.6 4.8 50 1-58 327-376 (500)
25 PLN02655 ent-kaurene oxidase 99.6 6E-16 1.3E-20 83.5 5.8 55 1-58 288-343 (466)
26 PLN03141 3-epi-6-deoxocathaste 99.6 7.5E-16 1.6E-20 82.8 5.5 58 1-58 277-336 (452)
27 PLN02196 abscisic acid 8'-hydr 99.6 2.2E-15 4.9E-20 81.3 5.5 57 2-58 291-348 (463)
28 PLN02302 ent-kaurenoic acid ox 99.6 5.1E-15 1.1E-19 79.9 5.4 57 2-58 314-372 (490)
29 PLN02648 allene oxide synthase 99.6 9.7E-15 2.1E-19 79.5 5.4 57 1-58 298-355 (480)
30 PLN02987 Cytochrome P450, fami 99.5 2.2E-14 4.7E-19 77.9 5.7 57 2-58 294-351 (472)
31 KOG0684|consensus 99.5 2.8E-14 6.2E-19 76.9 4.5 57 1-58 299-355 (486)
32 COG2124 CypX Cytochrome P450 [ 98.4 1.6E-07 3.5E-12 50.9 2.4 39 2-58 263-301 (411)
33 PF05952 ComX: Bacillus compet 87.2 0.29 6.3E-06 20.1 0.6 16 1-16 8-23 (57)
34 TIGR03244 arg_catab_AstA argin 75.2 4.2 9.1E-05 22.7 2.4 50 2-52 146-210 (336)
35 PF15300 INT_SG_DDX_CT_C: INTS 75.2 2.3 5.1E-05 18.0 1.2 16 35-50 39-54 (65)
36 PRK10456 arginine succinyltran 66.6 4.2 9.1E-05 22.8 1.3 50 2-52 148-212 (344)
37 TIGR03245 arg_AOST_alph argini 63.8 4 8.6E-05 22.8 0.9 50 2-52 147-211 (336)
38 TIGR03243 arg_catab_AOST argin 63.7 4 8.7E-05 22.7 0.9 50 2-52 146-210 (335)
39 cd00642 GTP_cyclohydro1 GTP cy 60.2 8.2 0.00018 19.7 1.6 20 2-21 110-129 (185)
40 PLN03044 GTP cyclohydrolase I; 58.9 12 0.00026 19.2 2.0 19 2-20 111-129 (188)
41 COG0302 FolE GTP cyclohydrolas 57.7 15 0.00032 19.0 2.2 20 2-21 119-138 (195)
42 TIGR00063 folE GTP cyclohydrol 57.6 9.7 0.00021 19.4 1.6 19 2-20 105-123 (180)
43 PF14824 Sirohm_synth_M: Siroh 57.0 11 0.00023 13.5 2.4 15 5-19 15-29 (30)
44 PRK12606 GTP cyclohydrolase I; 53.9 16 0.00035 19.0 2.0 19 2-20 125-143 (201)
45 KOG3451|consensus 51.7 21 0.00046 15.3 2.4 22 1-22 42-63 (71)
46 PRK09347 folE GTP cyclohydrola 48.6 15 0.00031 18.9 1.4 20 2-21 113-132 (188)
47 PRK13990 cell division topolog 47.7 29 0.00062 15.7 2.3 18 5-22 41-58 (90)
48 KOG0736|consensus 46.2 57 0.0012 21.1 3.6 40 10-49 651-690 (953)
49 PTZ00484 GTP cyclohydrolase I; 45.0 20 0.00044 19.4 1.6 20 2-21 184-203 (259)
50 COG0851 MinE Septum formation 44.1 29 0.00062 15.7 1.8 17 5-21 35-51 (88)
51 PF12627 PolyA_pol_RNAbd: Prob 42.3 12 0.00026 15.0 0.5 14 9-22 24-37 (64)
52 PF13043 DUF3903: Domain of un 42.2 24 0.00052 13.2 2.1 14 9-22 10-23 (40)
53 PF01227 GTP_cyclohydroI: GTP 41.6 14 0.00031 18.8 0.8 18 3-20 106-123 (179)
54 PHA01346 hypothetical protein 41.1 27 0.00059 13.5 1.8 17 5-21 29-46 (53)
55 PF14483 Cut8_M: Cut8 dimerisa 40.9 18 0.00039 13.5 0.8 10 4-13 25-34 (38)
56 PF03592 Terminase_2: Terminas 40.9 44 0.00095 15.9 2.4 18 2-19 39-56 (144)
57 PRK13991 cell division topolog 39.4 41 0.00088 15.1 2.4 17 5-21 35-51 (87)
58 PF07577 DUF1547: Domain of Un 39.3 26 0.00056 14.5 1.2 15 8-22 2-16 (58)
59 KOG4634|consensus 39.0 45 0.00097 15.4 2.4 16 4-19 57-72 (105)
60 PF13040 DUF3901: Protein of u 38.7 29 0.00063 13.2 2.1 17 2-18 19-35 (40)
61 PF11998 DUF3493: Protein of u 38.0 41 0.00089 14.7 2.0 14 5-18 2-15 (75)
62 PRK13989 cell division topolog 37.3 44 0.00095 14.8 2.3 17 5-21 36-52 (84)
63 KOG3348|consensus 36.3 37 0.0008 15.2 1.5 19 2-20 49-67 (85)
64 COG3138 AstA Arginine/ornithin 35.8 50 0.0011 18.5 2.2 50 2-52 148-212 (336)
65 cd03113 CTGs CTP synthetase (C 35.2 48 0.001 18.1 2.1 21 29-49 143-163 (255)
66 PRK13987 cell division topolog 34.3 53 0.0011 14.9 2.3 17 5-21 33-49 (91)
67 PF07849 DUF1641: Protein of u 34.3 35 0.00077 12.9 1.3 10 3-12 20-29 (42)
68 PRK11409 antitoxin YefM; Provi 34.0 49 0.0011 14.5 1.9 20 2-21 54-73 (83)
69 PRK01642 cls cardiolipin synth 33.9 1E+02 0.0022 18.1 4.0 47 4-52 435-481 (483)
70 PF02084 Bindin: Bindin; Inte 33.5 48 0.001 17.8 1.9 41 8-52 101-142 (238)
71 PHA02677 hypothetical protein; 33.2 60 0.0013 15.2 2.1 14 6-19 20-33 (108)
72 PRK13467 F0F1 ATP synthase sub 33.1 32 0.00069 14.6 1.0 13 3-15 31-43 (66)
73 PF08557 Lipid_DES: Sphingolip 32.7 25 0.00054 13.3 0.6 9 14-22 27-35 (39)
74 PLN02531 GTP cyclohydrolase I 32.6 40 0.00086 20.0 1.6 19 2-20 389-407 (469)
75 PRK13988 cell division topolog 31.1 63 0.0014 14.8 2.4 17 5-21 37-53 (97)
76 TIGR01215 minE cell division t 30.4 59 0.0013 14.3 2.3 17 5-21 34-50 (81)
77 PF15599 Imm38: Immunity prote 30.2 71 0.0015 15.1 2.1 15 5-19 109-123 (124)
78 TIGR01260 ATP_synt_c ATP synth 29.1 35 0.00077 14.0 0.8 12 3-14 21-32 (58)
79 PF08776 VASP_tetra: VASP tetr 29.0 47 0.001 12.7 2.3 13 7-19 11-23 (40)
80 PRK13466 F0F1 ATP synthase sub 29.0 38 0.00083 14.3 1.0 13 3-15 31-43 (66)
81 PRK06524 biotin carboxylase-li 28.3 43 0.00094 20.0 1.3 14 1-14 89-102 (493)
82 smart00511 ORANGE Orange domai 28.0 48 0.001 12.5 1.2 12 40-51 8-19 (45)
83 PF10777 YlaC: Inner membrane 27.8 24 0.00052 17.6 0.3 20 3-22 119-138 (155)
84 PRK06876 F0F1 ATP synthase sub 27.3 44 0.00096 14.7 1.0 13 3-15 39-51 (78)
85 PF14129 DUF4296: Domain of un 27.2 69 0.0015 14.0 1.8 18 3-20 61-78 (87)
86 PF00714 IFN-gamma: Interferon 26.7 76 0.0016 15.7 1.8 18 4-21 110-127 (138)
87 PF05511 ATP-synt_F6: Mitochon 25.7 85 0.0018 14.5 2.1 15 5-19 63-77 (99)
88 COG3586 Uncharacterized conser 25.5 27 0.00058 16.1 0.2 22 26-47 77-98 (101)
89 KOG3964|consensus 25.2 1.1E+02 0.0024 18.1 2.5 20 2-21 420-439 (469)
90 PF00154 RecA: recA bacterial 25.2 63 0.0014 18.1 1.5 18 2-19 303-320 (322)
91 PRK00296 minE cell division to 24.6 82 0.0018 14.0 2.3 17 5-21 35-51 (86)
92 PF14185 SpoIISB_antitox: Anti 24.4 41 0.0009 13.7 0.6 22 28-49 26-47 (56)
93 PF07971 Glyco_hydro_92: Glyco 24.3 1.7E+02 0.0038 17.6 3.2 46 8-55 385-430 (502)
94 PF07167 PhaC_N: Poly-beta-hyd 23.9 62 0.0013 16.5 1.3 15 1-15 65-79 (172)
95 PRK07558 F0F1 ATP synthase sub 23.8 51 0.0011 14.3 0.9 11 3-13 37-47 (74)
96 PF03605 DcuA_DcuB: Anaerobic 23.3 57 0.0012 18.7 1.2 15 2-16 191-205 (364)
97 COG2704 DcuB Anaerobic C4-dica 23.2 54 0.0012 19.2 1.1 14 2-15 194-207 (436)
98 TIGR00337 PyrG CTP synthase. C 23.0 89 0.0019 19.0 1.9 44 6-49 115-164 (525)
99 PF09556 RE_HaeIII: HaeIII res 22.2 64 0.0014 18.0 1.2 17 35-51 171-187 (300)
100 PF03776 MinE: Septum formatio 21.2 57 0.0012 13.8 0.8 15 7-21 25-39 (70)
101 PF06582 DUF1136: Repeat of un 20.5 63 0.0014 11.2 1.6 11 3-13 5-15 (28)
102 PF05542 DUF760: Protein of un 20.2 1E+02 0.0023 13.5 2.5 18 5-22 23-40 (86)
103 PF10189 DUF2356: Conserved pr 20.1 1E+02 0.0023 16.6 1.7 23 26-48 200-222 (230)
No 1
>KOG0156|consensus
Probab=99.78 E-value=3.9e-19 Score=96.51 Aligned_cols=57 Identities=33% Similarity=0.577 Sum_probs=51.2
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-cccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r~ 59 (59)
+|++||++|+|+++||+.++|. +..++.+|..++||++|+|+|++|++|++|. ++|.
T Consensus 312 ~Ll~~Pev~~K~qeEId~vvG~--~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~ 369 (489)
T KOG0156|consen 312 ELLNNPEVQKKLQEEIDEVVGK--GRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRE 369 (489)
T ss_pred HHHhCHHHHHHHHHHHHHHhCC--CCCCChhhhccCHHHHHHHHHHHhcCCCcccccccc
Confidence 4789999999999999999985 4448899999999999999999999999998 6663
No 2
>KOG0158|consensus
Probab=99.78 E-value=4.5e-19 Score=96.24 Aligned_cols=57 Identities=44% Similarity=0.715 Sum_probs=50.4
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcccccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r~ 59 (59)
+|++||++|+|+++||++++.+ ...++++.+.+|+|+++||+||+|+||+++.+.|+
T Consensus 320 eLA~~PdvQ~kLreEI~~~~~~--~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~ 376 (499)
T KOG0158|consen 320 ELAKNPDVQDKLREEIDEVLEE--KEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRE 376 (499)
T ss_pred HHhcChHHHHHHHHHHHHHhcc--cCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccce
Confidence 4799999999999999999764 22299999999999999999999999999987663
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.76 E-value=2.1e-18 Score=94.27 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=50.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-ccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r 58 (59)
+|+.||++|+|+++||+++++. +..++++++.+|||++||++|++|++|++|. ++|
T Consensus 353 ~La~~Pevq~kl~~EI~~v~g~--~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r 409 (543)
T PLN02971 353 EMINKPEILHKAMEEIDRVVGK--ERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPH 409 (543)
T ss_pred HHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcce
Confidence 4789999999999999999984 5678999999999999999999999999987 665
No 4
>PLN02290 cytokinin trans-hydroxylase
Probab=99.73 E-value=6.7e-18 Score=91.66 Aligned_cols=55 Identities=40% Similarity=0.719 Sum_probs=49.8
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++|+|+++|++++++. ..++++++.++||++||++|++|++|+++.++|
T Consensus 342 ~L~~~P~vq~kl~~Ei~~v~~~---~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R 396 (516)
T PLN02290 342 LLASNPTWQDKVRAEVAEVCGG---ETPSVDHLSKLTLLNMVINESLRLYPPATLLPR 396 (516)
T ss_pred HHhcCHHHHHHHHHHHHHHhCC---CCCCHHHHhcChHHHHHHHHHHHcCCCccccce
Confidence 3789999999999999999984 367899999999999999999999999987766
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.73 E-value=1e-17 Score=90.73 Aligned_cols=56 Identities=39% Similarity=0.530 Sum_probs=49.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccc-cc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII-AK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~-~r 58 (59)
+|++||++|+++++|++++++. +..++++++.++||++||++|++|++|+++.. +|
T Consensus 319 ~L~~~P~vq~kl~~Ei~~v~~~--~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r 375 (503)
T PLN02394 319 ELVNHPEIQKKLRDELDTVLGP--GNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPH 375 (503)
T ss_pred HHHcCHHHHHHHHHHHHHHhCC--CCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccce
Confidence 4789999999999999999874 44578889999999999999999999999884 44
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.72 E-value=1.4e-17 Score=90.62 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=50.1
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++|+|+++|++++++. ...++++++.++||++||++|++|++|++|...|
T Consensus 330 ~La~~Pevq~kl~~Ei~~v~~~--~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r 385 (516)
T PLN02183 330 ELMKSPEDLKRVQQELADVVGL--NRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLH 385 (516)
T ss_pred HHHhCHHHHHHHHHHHHHHcCC--CCCCCHHHhccChHHHHHHHHHhccCCCccceee
Confidence 3788999999999999999874 3467899999999999999999999999998665
No 7
>KOG0159|consensus
Probab=99.72 E-value=1.6e-17 Score=90.14 Aligned_cols=57 Identities=37% Similarity=0.533 Sum_probs=51.3
Q ss_pred cccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcccccC
Q psy5849 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r~ 59 (59)
|++||++|+++++|+.+++.. ++..++.+++.++||+.|||||++|+||++|.+.|.
T Consensus 343 LarnP~~Q~~L~~Ei~~~~p~-~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~ 399 (519)
T KOG0159|consen 343 LARNPEVQQRLREEILAVLPS-GNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRV 399 (519)
T ss_pred HhcChHHHHHHHHHHHhhCCC-cccccchHHHhhCHHHHHHHHhhhceeccccccccc
Confidence 789999999999999999874 356678889999999999999999999999998774
No 8
>PLN02500 cytochrome P450 90B1
Probab=99.72 E-value=1.8e-17 Score=89.60 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=49.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCC---CCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGD---DPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~---~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++|+|+++|++++++. .+...++++++.++||++||++|++|++|+++.++|
T Consensus 305 ~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R 365 (490)
T PLN02500 305 FLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFLHR 365 (490)
T ss_pred HHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCeee
Confidence 3789999999999999998742 123457999999999999999999999999998766
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.71 E-value=1.1e-17 Score=90.30 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=50.2
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-cccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r~ 59 (59)
+|++||++|+|+++|+++++++ ...++++++.+|||++||++|++|++|+++. ++|.
T Consensus 309 ~L~~~P~vq~kl~~Ei~~v~~~--~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~ 366 (482)
T PTZ00404 309 MLCNYPEIQEKAYNEIKSTVNG--RNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRS 366 (482)
T ss_pred HHHcCcHHHHHHHHHHHHHhcC--CCCCCccccccChHHHHHHHHHHHhcCCccccccee
Confidence 3789999999999999999874 3457888999999999999999999999987 6663
No 10
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.71 E-value=2.8e-17 Score=88.98 Aligned_cols=56 Identities=36% Similarity=0.560 Sum_probs=50.0
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-ccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r 58 (59)
+|++||++|+++++|+++++++ ...++++++.+|||++||++|++|++|+++. ++|
T Consensus 314 ~L~~~P~v~~kl~~Ei~~~~~~--~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R 370 (499)
T PLN03234 314 YLIKYPEAMKKAQDEVRNVIGD--KGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHR 370 (499)
T ss_pred HHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHhcChHHHHHHHHHhccCCCccccCCc
Confidence 3789999999999999999874 4567899999999999999999999999998 456
No 11
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.71 E-value=4e-17 Score=88.83 Aligned_cols=57 Identities=25% Similarity=0.612 Sum_probs=49.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++|+++++|++.+.+. +...++++++.+|||++||++|++|++|+++...|
T Consensus 319 ~L~~~P~v~~kl~~Ei~~~~~~-~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~r 375 (502)
T PLN02426 319 LLSKHPEVASAIREEADRVMGP-NQEAASFEEMKEMHYLHAALYESMRLFPPVQFDSK 375 (502)
T ss_pred HHhcCHHHHHHHHHHHHHhhCC-CCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcce
Confidence 3789999999999999998873 23467999999999999999999999999987554
No 12
>PLN02738 carotene beta-ring hydroxylase
Probab=99.70 E-value=3.7e-17 Score=90.93 Aligned_cols=55 Identities=36% Similarity=0.761 Sum_probs=49.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++|+|+++|++.+++ +..++++++.+|||++|||+|++|++|+++.++|
T Consensus 417 ~L~~~Pevq~kLreEl~~v~~---~~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~R 471 (633)
T PLN02738 417 LLSKEPSVVAKLQEEVDSVLG---DRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIR 471 (633)
T ss_pred HHHhCHHHHHHHHHHHHHhcC---CCCCCHHHHccCHHHHHHHHHHHhcCCCccccce
Confidence 478999999999999999987 3467999999999999999999999999988665
No 13
>PLN02966 cytochrome P450 83A1
Probab=99.69 E-value=5.5e-17 Score=88.03 Aligned_cols=59 Identities=25% Similarity=0.463 Sum_probs=50.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-cccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r~ 59 (59)
+|++||++|+|+++|++++++.++...++++++.++||++|+++|++|++|+++. ++|.
T Consensus 315 ~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~ 374 (502)
T PLN02966 315 YLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRA 374 (502)
T ss_pred HHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcc
Confidence 3788999999999999999874223457899999999999999999999999998 5663
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=99.69 E-value=6.8e-17 Score=87.03 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=49.9
Q ss_pred CcccCHHHHHHHHHHHHHhhCCC-CCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDD-PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~-~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|+.||++|+++++|++.+.+.. +...++++++.++||++||++|++|++|+++.++|
T Consensus 290 ~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~R 348 (463)
T PLN02774 290 YLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLR 348 (463)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCccc
Confidence 36889999999999999998631 23467899999999999999999999999988766
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.69 E-value=2.3e-17 Score=86.93 Aligned_cols=56 Identities=43% Similarity=0.716 Sum_probs=49.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCc-cccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP-IIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~-~~~r 58 (59)
+|++||++|+++++|++.+.+. +..++.+++.++||++||++|++|++|+++ .++|
T Consensus 288 ~L~~~P~~~~kl~~Ei~~~~~~--~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R 344 (463)
T PF00067_consen 288 ELAKNPEVQEKLREEIDSVLGD--GREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPR 344 (463)
T ss_dssp HHHHSHHHHHHHHHHHHHHTTT--SSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEE
T ss_pred cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 3688999999999999999864 446788999999999999999999999999 4766
No 16
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.68 E-value=7.9e-17 Score=87.60 Aligned_cols=58 Identities=36% Similarity=0.633 Sum_probs=48.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCCC------------------CCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDD------------------PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|+.||++|+|+++|++++++.. .+..++++++.++||++||++|++|++|+++..+|
T Consensus 318 ~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r 393 (516)
T PLN03195 318 MIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPK 393 (516)
T ss_pred HHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhh
Confidence 47899999999999999886421 02357889999999999999999999999988654
No 17
>PLN00168 Cytochrome P450; Provisional
Probab=99.68 E-value=1.4e-16 Score=86.80 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=49.8
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-ccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r 58 (59)
+|++||++|+|+++|++++++. ....++++++.+|||++||++|++|++|+++. ++|
T Consensus 332 ~L~~~P~~q~kl~~Ei~~v~~~-~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R 389 (519)
T PLN00168 332 ELVKNPSIQSKLHDEIKAKTGD-DQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPH 389 (519)
T ss_pred HHHhCHHHHHHHHHHHHHHhCC-CCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCc
Confidence 3788999999999999999873 23567899999999999999999999999987 466
No 18
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.68 E-value=8.5e-17 Score=87.39 Aligned_cols=56 Identities=25% Similarity=0.514 Sum_probs=50.0
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-ccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r 58 (59)
+|+.||++|+++++|++++++. ...++++++.++||++|+++|++|++|+++. ++|
T Consensus 322 ~L~~~P~vq~kl~~Ei~~~~~~--~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R 378 (514)
T PLN03112 322 EVIKNPRVLRKIQEELDSVVGR--NRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPH 378 (514)
T ss_pred HHHhChHHHHHHHHHHHHhcCC--CCcCChhhhccCcHHHHHHHHHhccCCCccccccc
Confidence 3788999999999999999874 4568899999999999999999999999987 566
No 19
>KOG0157|consensus
Probab=99.68 E-value=1.3e-16 Score=86.86 Aligned_cols=58 Identities=36% Similarity=0.749 Sum_probs=46.3
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcccccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r~ 59 (59)
+|+.||++|+++++|+.++++.. ..........+|+|+++|++|++|++|++|.+.|.
T Consensus 317 ~La~hP~vq~k~~eEi~~i~~~~-~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~ 374 (497)
T KOG0157|consen 317 LLAKHPEVQEKLREEVDEILGNR-DDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARK 374 (497)
T ss_pred HHhcCHHHHHHHHHHHHHHhCCC-CCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcc
Confidence 47899999999999999999842 22222223336999999999999999999998774
No 20
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.67 E-value=2e-16 Score=86.09 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=50.4
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-cccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r~ 59 (59)
+|+.||++|+|+++|++++++. ...++++++.++||++||++|++|++|+++. ++|.
T Consensus 315 ~L~~~P~~~~kl~~Ei~~~~~~--~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~ 372 (504)
T PLN00110 315 EMLKNPSILKRAHEEMDQVIGR--NRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRV 372 (504)
T ss_pred HHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccc
Confidence 3688999999999999999874 4568899999999999999999999999987 6663
No 21
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.67 E-value=2.3e-16 Score=85.94 Aligned_cols=57 Identities=32% Similarity=0.571 Sum_probs=50.4
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc-cccC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI-IAKK 59 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~-~~r~ 59 (59)
+|++||++|+++++|++++++. ...++++++.++||++||++|++|++|+++. ++|.
T Consensus 323 ~L~~~P~~~~kl~~Ei~~~~~~--~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~ 380 (517)
T PLN02687 323 ELIRHPDILKKAQEELDAVVGR--DRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRM 380 (517)
T ss_pred HHHhCHHHHHHHHHHHHHHcCC--CCCCCHHHhhhCHHHHHHHHHHHccCCCcccccccc
Confidence 3688999999999999999874 4567899999999999999999999999987 6663
No 22
>PLN02936 epsilon-ring hydroxylase
Probab=99.65 E-value=3.6e-16 Score=84.75 Aligned_cols=54 Identities=39% Similarity=0.754 Sum_probs=47.6
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~ 57 (59)
+|++||++|+++++|++.+++. ..++++++.+|||++||++|++|++|+++...
T Consensus 304 ~L~~~p~~~~kl~~Ei~~~~~~---~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~ 357 (489)
T PLN02936 304 LLSKNPEALRKAQEELDRVLQG---RPPTYEDIKELKYLTRCINESMRLYPHPPVLI 357 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhcC---CCCCHHHHhhCHHHHHHHHHhhhcCCCccccc
Confidence 4688999999999999999873 34788999999999999999999999988743
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.65 E-value=4.2e-16 Score=85.41 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=49.6
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccc-cc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII-AK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~-~r 58 (59)
+|+.||++|+++++|++++++. ...++.+++.++||++||++|++|++|+++.. +|
T Consensus 340 ~L~~~P~~q~kl~~Ei~~v~~~--~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r 396 (534)
T PLN03018 340 EMLKNPEILRKALKELDEVVGK--DRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPH 396 (534)
T ss_pred HHHcCHHHHHHHHHHHHHHhCC--CCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCc
Confidence 3789999999999999999874 45678899999999999999999999999884 44
No 24
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.65 E-value=2.5e-16 Score=85.63 Aligned_cols=50 Identities=28% Similarity=0.578 Sum_probs=44.4
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|+.||++|+|+++|+++++ +++++.+|||++|+++|++|++|++|.+.|
T Consensus 327 ~La~~Pevq~kl~~Ei~~v~--------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r 376 (500)
T PLN02169 327 LLSKHPQVMAKIRHEINTKF--------DNEDLEKLVYLHAALSESMRLYPPLPFNHK 376 (500)
T ss_pred HHHCCHHHHHHHHHHHHhhC--------CHHHHhcCHHHHHHHHHHHhcCCCCCcCce
Confidence 47899999999999998764 457899999999999999999999998665
No 25
>PLN02655 ent-kaurene oxidase
Probab=99.64 E-value=6e-16 Score=83.46 Aligned_cols=55 Identities=38% Similarity=0.607 Sum_probs=48.9
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccc-cc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII-AK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~-~r 58 (59)
+|+.||++|+++++|++.+++. . .++++++.++||++|+++|++|++|+++.+ +|
T Consensus 288 ~l~~~p~~~~~l~~Ei~~~~~~--~-~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r 343 (466)
T PLN02655 288 ELAKNPDKQERLYREIREVCGD--E-RVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPR 343 (466)
T ss_pred HHHcCHHHHHHHHHHHHHHhCC--C-CCCHHHHhcChHHHHHHHHHhccCCCcCCCCCc
Confidence 3788999999999999999874 3 389999999999999999999999999874 56
No 26
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.63 E-value=7.5e-16 Score=82.81 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=48.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCC--CCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGD--DPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~--~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|+.||++|+++++|++++.+. ..+..++.++..++||++||++|++|++|+++.++|
T Consensus 277 ~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R 336 (452)
T PLN03141 277 FLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMR 336 (452)
T ss_pred HHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCcce
Confidence 3688999999999999887641 123457889999999999999999999999887766
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.61 E-value=2.2e-15 Score=81.27 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=49.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCC-CCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 2 LALHPKIQQEVYDEIVQVLGDD-PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~~~-~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
|++||++|+++++|++.+.+.. ....++++++.+++|++|+++|++|++|+++...|
T Consensus 291 L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~R 348 (463)
T PLN02196 291 LAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFR 348 (463)
T ss_pred HHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccce
Confidence 6789999999999999988632 13467899999999999999999999999988655
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.58 E-value=5.1e-15 Score=79.95 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=48.5
Q ss_pred cccCHHHHHHHHHHHHHhhCCCC--CCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 2 LALHPKIQQEVYDEIVQVLGDDP--ETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~~~~--~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
|++||++|+++++|++++.+... ...++++++.++||++|+++|++|++|+++..+|
T Consensus 314 L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R 372 (490)
T PLN02302 314 LQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFR 372 (490)
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchh
Confidence 67899999999999999986311 1236889999999999999999999999988665
No 29
>PLN02648 allene oxide synthase
Probab=99.56 E-value=9.7e-15 Score=79.48 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=48.9
Q ss_pred CcccCHH-HHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPK-IQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~-~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|+.||+ +|+++++|++.+++. .+..++++++.+|||++++++|++|++|+++.+.|
T Consensus 298 ~L~~~p~~v~~klr~Ei~~~~~~-~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r 355 (480)
T PLN02648 298 WVGRAGEELQARLAEEVRSAVKA-GGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYG 355 (480)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcc-CCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccc
Confidence 3678985 999999999999863 23467999999999999999999999999988655
No 30
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.54 E-value=2.2e-14 Score=77.86 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=48.5
Q ss_pred cccCHHHHHHHHHHHHHhhCCC-CCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 2 LALHPKIQQEVYDEIVQVLGDD-PETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~~~-~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
|+.||++|+++++|++.+.+.. +...++++++.++||++|+++|++|++|+++.++|
T Consensus 294 L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R 351 (472)
T PLN02987 294 LTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFR 351 (472)
T ss_pred HHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccc
Confidence 6789999999999999987531 13457889999999999999999999999987666
No 31
>KOG0684|consensus
Probab=99.51 E-value=2.8e-14 Score=76.92 Aligned_cols=57 Identities=44% Similarity=0.638 Sum_probs=50.9
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
+|++||++++.+++|+.+++|. ....++.+.++++|.++.||+|++|++||.+.++|
T Consensus 299 yLl~~Pe~~~a~~eE~k~vlG~-~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R 355 (486)
T KOG0684|consen 299 YLLRHPEAQKAVREEQKRVLGE-KKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLMR 355 (486)
T ss_pred HHhhCHHHHHHHHHHHHHHhhc-cCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHHH
Confidence 5789999999999999999984 34458999999999999999999999998887666
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=1.6e-07 Score=50.87 Aligned_cols=39 Identities=38% Similarity=0.613 Sum_probs=31.5
Q ss_pred cccCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCccccc
Q psy5849 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~~~r 58 (59)
|++||+.++++++|.+. +|+.++++|++|++|+++.+.|
T Consensus 263 L~~~P~~~~~l~~e~~~------------------~~~~~~v~E~LR~~ppv~~~~R 301 (411)
T COG2124 263 LLRHPDQLAKLRAEPDR------------------PLLEAVVEETLRLYPPVPLARR 301 (411)
T ss_pred HHHCchHHHHHHhCcch------------------HHHHHHHHHHHHhCCchhccce
Confidence 56788877777766532 8999999999999999988655
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=87.19 E-value=0.29 Score=20.13 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=12.5
Q ss_pred CcccCHHHHHHHHHHH
Q psy5849 1 MLALHPKIQQEVYDEI 16 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei 16 (59)
||.+||++.+++.+.-
T Consensus 8 YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 8 YLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHChHHHHHHHcCC
Confidence 5788999998887543
No 34
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=75.23 E-value=4.2 Score=22.68 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=33.1
Q ss_pred cccCHHH-HHHHHHHHHHhhCCCCCCCCCHHHHh----hcHHHH----------HHHHHHhccCCC
Q psy5849 2 LALHPKI-QQEVYDEIVQVLGDDPETVPTYDQIQ----ELHLLT----------RVIKETLRLYPA 52 (59)
Q Consensus 2 l~~~p~~-~~~~~~Ei~~~~~~~~~~~~~~~~~~----~~~~~~----------a~~~e~~R~~~~ 52 (59)
++.+|+. .+++..|++.+... ++..+-|+.+. .|.|.. .+|.|-|--+|+
T Consensus 146 iA~~~erF~~~viAEmrG~~De-~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PI 210 (336)
T TIGR03244 146 IAQFRERFSKKIIAEMRGVSDE-QGRSPFWNALGRHFFSMDFSQADYLSGIGQKAFIAELMPKFPI 210 (336)
T ss_pred HHhhHhhhhhhhhhhhcCccCC-CCCCchHHHhhccccCCCHHHHHHHhccCcchhHHHHCCCCCc
Confidence 5667764 47889999888874 45666666542 344433 477888877776
No 35
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=75.18 E-value=2.3 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.9
Q ss_pred hcHHHHHHHHHHhccC
Q psy5849 35 ELHLLTRVIKETLRLY 50 (59)
Q Consensus 35 ~~~~~~a~~~e~~R~~ 50 (59)
+..++..+|+|+.|+.
T Consensus 39 r~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 39 RKQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3468899999999974
No 36
>PRK10456 arginine succinyltransferase; Provisional
Probab=66.58 E-value=4.2 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=32.4
Q ss_pred cccCHHH-HHHHHHHHHHhhCCCCCCCCCHHHHh----hcHHHH----------HHHHHHhccCCC
Q psy5849 2 LALHPKI-QQEVYDEIVQVLGDDPETVPTYDQIQ----ELHLLT----------RVIKETLRLYPA 52 (59)
Q Consensus 2 l~~~p~~-~~~~~~Ei~~~~~~~~~~~~~~~~~~----~~~~~~----------a~~~e~~R~~~~ 52 (59)
++.||+. .+++..|++.+... ++..|-|+.+. .|.|.. .+|.|-|--+|+
T Consensus 148 iA~~~erF~~~viAEmRG~~De-~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PI 212 (344)
T PRK10456 148 MAAFRDKFNDKVVAEMRGVIDE-HGYSPFWQSLGKRFFSMDFSRADYLCGTGQKAFIAELMPKHPI 212 (344)
T ss_pred HHhhHhhhhhhhheeccCccCC-CCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCc
Confidence 5667764 47888899888774 45566666542 344433 467787777776
No 37
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=63.77 E-value=4 Score=22.76 Aligned_cols=50 Identities=32% Similarity=0.448 Sum_probs=32.1
Q ss_pred cccCHHH-HHHHHHHHHHhhCCCCCCCCCHHHHh----hcHHHH----------HHHHHHhccCCC
Q psy5849 2 LALHPKI-QQEVYDEIVQVLGDDPETVPTYDQIQ----ELHLLT----------RVIKETLRLYPA 52 (59)
Q Consensus 2 l~~~p~~-~~~~~~Ei~~~~~~~~~~~~~~~~~~----~~~~~~----------a~~~e~~R~~~~ 52 (59)
++.||+. .+++..|++.+... ++..|-|+.+. .|.|.. .+|.|-|--+|+
T Consensus 147 iA~~~erF~~~viAEmrG~~De-~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PI 211 (336)
T TIGR03245 147 MAAHRERFQSRIIVEIQGVQDD-NGDSPFWDAIGRHFFDLDFATAEYYSGIKSKTFIAELMPPYPI 211 (336)
T ss_pred HHhhHhhhhhhheeeccCccCC-CCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCc
Confidence 5667764 46788898888764 45666666542 344433 467777777775
No 38
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=63.75 E-value=4 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=32.4
Q ss_pred cccCHHH-HHHHHHHHHHhhCCCCCCCCCHHHHh----hcHHHH----------HHHHHHhccCCC
Q psy5849 2 LALHPKI-QQEVYDEIVQVLGDDPETVPTYDQIQ----ELHLLT----------RVIKETLRLYPA 52 (59)
Q Consensus 2 l~~~p~~-~~~~~~Ei~~~~~~~~~~~~~~~~~~----~~~~~~----------a~~~e~~R~~~~ 52 (59)
++.||+. .+++..|+..+... ++..|-|+.+. .|.|.. .+|.|.|--+|+
T Consensus 146 iA~~~erF~~~viAEmrG~~De-~G~SPFWd~lg~hFF~mdF~~AD~Lsg~~~k~FIaeLMP~~PI 210 (335)
T TIGR03243 146 IAAFRERFGDKIIAEMRGVSDE-QGRSPFWEALGRHFFSMDFAQADYLSGIGSKTFIAELMPKYPI 210 (335)
T ss_pred HHhhHhhhhhhheeeccCccCC-CCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCc
Confidence 5667764 46788898888764 45666666552 344433 467787777776
No 39
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=60.15 E-value=8.2 Score=19.69 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=15.7
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
.++.|.+|+++..+|...+.
T Consensus 110 ~arRlQiQERLt~qIa~al~ 129 (185)
T cd00642 110 FSRRLQVQERLTKQIAVAIQ 129 (185)
T ss_pred HhcCchHHHHHHHHHHHHHH
Confidence 46778999999988877653
No 40
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=58.91 E-value=12 Score=19.17 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.2
Q ss_pred cccCHHHHHHHHHHHHHhh
Q psy5849 2 LALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~ 20 (59)
.++.|.+|+|+..+|...+
T Consensus 111 ~arRlQiQERLT~qIa~~l 129 (188)
T PLN03044 111 YARRLQTQERLTRQIADAI 129 (188)
T ss_pred HhcCcHHHHHHHHHHHHHH
Confidence 3577899999998887765
No 41
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=57.65 E-value=15 Score=19.05 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.7
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
.++.|.+|+++.++|...+.
T Consensus 119 ~arR~QvQErlT~qIA~al~ 138 (195)
T COG0302 119 FARRLQVQERLTEQIADALQ 138 (195)
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 35678999999999877653
No 42
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=57.58 E-value=9.7 Score=19.36 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=15.2
Q ss_pred cccCHHHHHHHHHHHHHhh
Q psy5849 2 LALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~ 20 (59)
.++.|.+|+++..+|...+
T Consensus 105 ~arRlQiQERlT~qIa~~l 123 (180)
T TIGR00063 105 FARRPQVQERLTQQIAEAL 123 (180)
T ss_pred HhcCchHHHHHHHHHHHHH
Confidence 3677899999998887765
No 43
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=56.97 E-value=11 Score=13.48 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHh
Q psy5849 5 HPKIQQEVYDEIVQV 19 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~ 19 (59)
.|..-.++++|+...
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 477778888888764
No 44
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=53.90 E-value=16 Score=18.97 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.3
Q ss_pred cccCHHHHHHHHHHHHHhh
Q psy5849 2 LALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~ 20 (59)
.++.|.+|+|+..+|...+
T Consensus 125 ~arRlQvQERLT~qIa~~l 143 (201)
T PRK12606 125 FARRLQIQENLTRQIATAV 143 (201)
T ss_pred HhcCchHHHHHHHHHHHHH
Confidence 3677899999998887765
No 45
>KOG3451|consensus
Probab=51.65 E-value=21 Score=15.30 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=17.7
Q ss_pred CcccCHHHHHHHHHHHHHhhCC
Q psy5849 1 MLALHPKIQQEVYDEIVQVLGD 22 (59)
Q Consensus 1 ~l~~~p~~~~~~~~Ei~~~~~~ 22 (59)
+|.-+|++.+.++.|+.+.+..
T Consensus 42 hLfV~p~~vemvk~~le~~le~ 63 (71)
T KOG3451|consen 42 HLFVNPSIVEMVKNELERILEN 63 (71)
T ss_pred eeeecHHHHHHHHHHHHHHHHh
Confidence 3567899999999999888763
No 46
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=48.59 E-value=15 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=15.3
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
.++.|.+|+++..+|...+.
T Consensus 113 ~arRlQiQERlT~qIa~al~ 132 (188)
T PRK09347 113 FARRPQVQERLTAQIADALQ 132 (188)
T ss_pred HHcCchhHHHHHHHHHHHHH
Confidence 35678999999888877653
No 47
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=47.66 E-value=29 Score=15.72 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy5849 5 HPKIQQEVYDEIVQVLGD 22 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~~ 22 (59)
.|+....+++||-.++..
T Consensus 41 ~pd~L~~lk~eIl~VI~K 58 (90)
T PRK13990 41 SSHLLAELKDEIIEVVKK 58 (90)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 468999999999988753
No 48
>KOG0736|consensus
Probab=46.20 E-value=57 Score=21.11 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhcc
Q psy5849 10 QEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRL 49 (59)
Q Consensus 10 ~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~ 49 (59)
.+++.|....+|...-...+|+|+..+-.++..|.+|.++
T Consensus 651 s~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736|consen 651 SRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred HHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC
Confidence 4566677777774223456899999999999999999887
No 49
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=45.04 E-value=20 Score=19.40 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=15.4
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
.++.|.+|+++..+|...+.
T Consensus 184 ~arRlQiQERLT~qIAdaL~ 203 (259)
T PTZ00484 184 FSRRLQVQERLTQQIANALQ 203 (259)
T ss_pred HhcccHHHHHHHHHHHHHHH
Confidence 35678999999988877653
No 50
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=44.07 E-value=29 Score=15.69 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|++...+++||-+++.
T Consensus 35 ~pd~l~~Lr~eIl~VI~ 51 (88)
T COG0851 35 QPDYLEQLRKEILEVIS 51 (88)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 47888999999988864
No 51
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=42.31 E-value=12 Score=15.01 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhCC
Q psy5849 9 QQEVYDEIVQVLGD 22 (59)
Q Consensus 9 ~~~~~~Ei~~~~~~ 22 (59)
.+|+.+|+.+++..
T Consensus 24 ~ERi~~El~kil~~ 37 (64)
T PF12627_consen 24 KERIREELEKILSS 37 (64)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC
Confidence 47899999999873
No 52
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=42.16 E-value=24 Score=13.20 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhCC
Q psy5849 9 QQEVYDEIVQVLGD 22 (59)
Q Consensus 9 ~~~~~~Ei~~~~~~ 22 (59)
.++++.|+...+|.
T Consensus 10 i~kvr~eckrrfgk 23 (40)
T PF13043_consen 10 IQKVRAECKRRFGK 23 (40)
T ss_pred HHHHHHHHHHHhch
Confidence 47899999998874
No 53
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=41.56 E-value=14 Score=18.75 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.7
Q ss_pred ccCHHHHHHHHHHHHHhh
Q psy5849 3 ALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 3 ~~~p~~~~~~~~Ei~~~~ 20 (59)
++.|.+|+++..+|...+
T Consensus 106 arRlQlQERLT~qIa~~l 123 (179)
T PF01227_consen 106 ARRLQLQERLTRQIADAL 123 (179)
T ss_dssp HSSEE-HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 567789999988876654
No 54
>PHA01346 hypothetical protein
Probab=41.07 E-value=27 Score=13.54 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=11.8
Q ss_pred CHHH-HHHHHHHHHHhhC
Q psy5849 5 HPKI-QQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~-~~~~~~Ei~~~~~ 21 (59)
+|+. |+++..|++..+.
T Consensus 29 dpdfsqekihaeldsllr 46 (53)
T PHA01346 29 DPDFSQEKIHAELDSLLR 46 (53)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 4543 7888888887654
No 55
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=40.90 E-value=18 Score=13.52 Aligned_cols=10 Identities=60% Similarity=0.896 Sum_probs=6.0
Q ss_pred cCHHHHHHHH
Q psy5849 4 LHPKIQQEVY 13 (59)
Q Consensus 4 ~~p~~~~~~~ 13 (59)
+||++++.++
T Consensus 25 ~HPei~~~i~ 34 (38)
T PF14483_consen 25 RHPEIQQEIR 34 (38)
T ss_dssp HSTHHHHHHH
T ss_pred hChhHHHHHH
Confidence 5676665554
No 56
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=40.89 E-value=44 Score=15.92 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=12.8
Q ss_pred cccCHHHHHHHHHHHHHh
Q psy5849 2 LALHPKIQQEVYDEIVQV 19 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~ 19 (59)
|+++|.|++.+.+-....
T Consensus 39 LL~n~~V~~~I~~~~~e~ 56 (144)
T PF03592_consen 39 LLRNPKVKAYIEELMKER 56 (144)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHH
Confidence 678899988886554444
No 57
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=39.44 E-value=41 Score=15.10 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++|+-.++.
T Consensus 35 ~p~~l~~lk~eil~VIs 51 (87)
T PRK13991 35 TPEMMEQMKADLAEVIK 51 (87)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 58889999999988764
No 58
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=39.30 E-value=26 Score=14.55 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhCC
Q psy5849 8 IQQEVYDEIVQVLGD 22 (59)
Q Consensus 8 ~~~~~~~Ei~~~~~~ 22 (59)
+..++|+.++.+++.
T Consensus 2 iL~~vR~HLD~vy~~ 16 (58)
T PF07577_consen 2 ILPAVRAHLDVVYDQ 16 (58)
T ss_pred HHHHHHHHhhceecC
Confidence 567899999999875
No 59
>KOG4634|consensus
Probab=39.03 E-value=45 Score=15.44 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.1
Q ss_pred cCHHHHHHHHHHHHHh
Q psy5849 4 LHPKIQQEVYDEIVQV 19 (59)
Q Consensus 4 ~~p~~~~~~~~Ei~~~ 19 (59)
.+|++++.+.+|+.+.
T Consensus 57 s~pe~e~eLk~el~rl 72 (105)
T KOG4634|consen 57 SDPEYEQELKEELFRL 72 (105)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3688999999998776
No 60
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=38.71 E-value=29 Score=13.22 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=10.0
Q ss_pred cccCHHHHHHHHHHHHH
Q psy5849 2 LALHPKIQQEVYDEIVQ 18 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~ 18 (59)
|+++++..+++.+-++.
T Consensus 19 ll~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 19 LLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 45566666666655543
No 61
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=37.96 E-value=41 Score=14.70 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHH
Q psy5849 5 HPKIQQEVYDEIVQ 18 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~ 18 (59)
+|+...|+++|.+.
T Consensus 2 ~~~~~~rLraE~~a 15 (75)
T PF11998_consen 2 DPEQYARLRAEAQA 15 (75)
T ss_pred CHHHHHHHHHHHHC
Confidence 57778899999865
No 62
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=37.28 E-value=44 Score=14.84 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++|+-.++.
T Consensus 36 ~p~~l~~lk~dil~VIs 52 (84)
T PRK13989 36 PPDYLPALQKELVAVIS 52 (84)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 48899999999998875
No 63
>KOG3348|consensus
Probab=36.33 E-value=37 Score=15.23 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=12.8
Q ss_pred cccCHHHHHHHHHHHHHhh
Q psy5849 2 LALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~ 20 (59)
|.+|.-|...+++|++.+-
T Consensus 49 L~rHRlVN~~L~Eeik~iH 67 (85)
T KOG3348|consen 49 LARHRLVNSILAEEIKEIH 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456666777888887763
No 64
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=35.84 E-value=50 Score=18.53 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=32.1
Q ss_pred cccCHHHH-HHHHHHHHHhhCCCCCCCCCHHHHh----hcHHHH----------HHHHHHhccCCC
Q psy5849 2 LALHPKIQ-QEVYDEIVQVLGDDPETVPTYDQIQ----ELHLLT----------RVIKETLRLYPA 52 (59)
Q Consensus 2 l~~~p~~~-~~~~~Ei~~~~~~~~~~~~~~~~~~----~~~~~~----------a~~~e~~R~~~~ 52 (59)
++.+++.- +++..|++.+... ++..|-|+.+. +|.|.. ++|-|-|--||.
T Consensus 148 mA~~r~~F~~~ViAEmRG~sDe-dGrSPFW~~lg~hFF~mdF~~AD~l~g~~~k~FIaeLmPk~PI 212 (336)
T COG3138 148 MAAFRDRFADKVVAEMRGVSDE-DGRSPFWESLGRHFFSMDFSQADYLCGTGQKAFIAELMPKHPI 212 (336)
T ss_pred hHhhHHHHHHHHHHHHhccccc-cCCChhHHHHhhhhhccchhhhhHhhccCcchhHHHhCCCCce
Confidence 56677654 7888999988764 45666665543 343332 467777776665
No 65
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=35.25 E-value=48 Score=18.06 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=15.2
Q ss_pred CHHHHhhcHHHHHHHHHHhcc
Q psy5849 29 TYDQIQELHLLTRVIKETLRL 49 (59)
Q Consensus 29 ~~~~~~~~~~~~a~~~e~~R~ 49 (59)
+..|+..+||+.|+-+-..++
T Consensus 143 TvGDiEs~pf~EAirq~~~~~ 163 (255)
T cd03113 143 TVGDIESLPFLEAIRQMKLEL 163 (255)
T ss_pred ccccccccHHHHHHHHHHHHh
Confidence 456888999999986554444
No 66
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=34.30 E-value=53 Score=14.89 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++|+..++.
T Consensus 33 sp~~l~~lk~eIl~VI~ 49 (91)
T PRK13987 33 SPDVLEMIKEDILKVIS 49 (91)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 48889999999988875
No 67
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=34.30 E-value=35 Score=12.89 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.5
Q ss_pred ccCHHHHHHH
Q psy5849 3 ALHPKIQQEV 12 (59)
Q Consensus 3 ~~~p~~~~~~ 12 (59)
+++|++|.-+
T Consensus 20 l~DpdvqrgL 29 (42)
T PF07849_consen 20 LRDPDVQRGL 29 (42)
T ss_pred HcCHHHHHHH
Confidence 4566666443
No 68
>PRK11409 antitoxin YefM; Provisional
Probab=34.04 E-value=49 Score=14.47 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.1
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
|+.+|...+++.+.+.+.-.
T Consensus 54 ll~~p~~~~~l~~~i~~~~~ 73 (83)
T PRK11409 54 LLRSPANARRLMDSIDSLKS 73 (83)
T ss_pred HhcCHHHHHHHHHHHHHHHc
Confidence 56778777888777776543
No 69
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=33.94 E-value=1e+02 Score=18.14 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCC
Q psy5849 4 LHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPA 52 (59)
Q Consensus 4 ~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~ 52 (59)
.++++.+++.+....-+.. ....+.++..+.++...+.....|+..|
T Consensus 435 ~d~~~~~~l~~~f~~d~~~--s~~i~~~~~~~r~~~~r~~~~~~rl~sP 481 (483)
T PRK01642 435 DDTGFAADLAAMQEDYFAR--SRELDLEEWRKRPLWQRIAERVARLFSP 481 (483)
T ss_pred ECHHHHHHHHHHHHHHHHh--CeEcCHHHHhhCCHHHHHHHHHHHHhcc
Confidence 3566666666666555542 4567778888888888887777787654
No 70
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=33.52 E-value=48 Score=17.76 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCH-HHHhhcHHHHHHHHHHhccCCC
Q psy5849 8 IQQEVYDEIVQVLGDDPETVPTY-DQIQELHLLTRVIKETLRLYPA 52 (59)
Q Consensus 8 ~~~~~~~Ei~~~~~~~~~~~~~~-~~~~~~~~~~a~~~e~~R~~~~ 52 (59)
|-.|+.+.|+.+++. ..+++ .|+ +-||---.+..-+|.|+.
T Consensus 101 ISAKvm~~ikavLga---TKiDLPVDI-NDPYDlGLLLRhLRHHSN 142 (238)
T PF02084_consen 101 ISAKVMEDIKAVLGA---TKIDLPVDI-NDPYDLGLLLRHLRHHSN 142 (238)
T ss_pred ccHHHHHHHHHHhcc---ccccccccc-CChhhHHHHHHHHHHHHH
Confidence 457888899999884 22222 122 225544444455665553
No 71
>PHA02677 hypothetical protein; Provisional
Probab=33.21 E-value=60 Score=15.21 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q psy5849 6 PKIQQEVYDEIVQV 19 (59)
Q Consensus 6 p~~~~~~~~Ei~~~ 19 (59)
|.+-+|+|.|-+..
T Consensus 20 P~I~EKlR~E~~Af 33 (108)
T PHA02677 20 PGIFEKLRQEHAAF 33 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999998764
No 72
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=33.10 E-value=32 Score=14.62 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=7.8
Q ss_pred ccCHHHHHHHHHH
Q psy5849 3 ALHPKIQQEVYDE 15 (59)
Q Consensus 3 ~~~p~~~~~~~~E 15 (59)
+++|+.+.+++.-
T Consensus 31 aRqPE~~~~i~~~ 43 (66)
T PRK13467 31 ARQPEMIGQLRSL 43 (66)
T ss_pred HcChhHHHhHHHH
Confidence 4667766666543
No 73
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=32.72 E-value=25 Score=13.35 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=5.4
Q ss_pred HHHHHhhCC
Q psy5849 14 DEIVQVLGD 22 (59)
Q Consensus 14 ~Ei~~~~~~ 22 (59)
-||.+.+|.
T Consensus 27 PeIk~L~G~ 35 (39)
T PF08557_consen 27 PEIKKLMGP 35 (39)
T ss_pred hHHHHHhCC
Confidence 566666663
No 74
>PLN02531 GTP cyclohydrolase I
Probab=32.57 E-value=40 Score=20.01 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=15.1
Q ss_pred cccCHHHHHHHHHHHHHhh
Q psy5849 2 LALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~ 20 (59)
.++.|.+|+|+..+|...+
T Consensus 389 ~arRlQvQERLT~qIA~al 407 (469)
T PLN02531 389 YGFRLQVQERLTRQIAETV 407 (469)
T ss_pred HhccchHHHHHHHHHHHHH
Confidence 3567899999998887665
No 75
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=31.06 E-value=63 Score=14.83 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++||..++.
T Consensus 37 sp~~l~~mk~dIl~VIs 53 (97)
T PRK13988 37 SPELLEQMRKEILEVVA 53 (97)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 48899999999988875
No 76
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=30.44 E-value=59 Score=14.28 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++|+..++.
T Consensus 34 ~p~~l~~mk~dil~VIs 50 (81)
T TIGR01215 34 APEYLEELRKEILEVIS 50 (81)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 47888999999988875
No 77
>PF15599 Imm38: Immunity protein 38
Probab=30.20 E-value=71 Score=15.12 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHh
Q psy5849 5 HPKIQQEVYDEIVQV 19 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~ 19 (59)
+|++-++..+|++.+
T Consensus 109 ~p~w~~~~~~e~~~~ 123 (124)
T PF15599_consen 109 NPKWGKRAKQEIAEI 123 (124)
T ss_pred CHHHHHHHHHHHHhh
Confidence 566666666666543
No 78
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=29.12 E-value=35 Score=14.00 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.5
Q ss_pred ccCHHHHHHHHH
Q psy5849 3 ALHPKIQQEVYD 14 (59)
Q Consensus 3 ~~~p~~~~~~~~ 14 (59)
+++|+...+++.
T Consensus 21 aRqPe~~~~l~~ 32 (58)
T TIGR01260 21 ARQPELKPLLRT 32 (58)
T ss_pred HcChhHHHhHHH
Confidence 456666555543
No 79
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=28.99 E-value=47 Score=12.69 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q psy5849 7 KIQQEVYDEIVQV 19 (59)
Q Consensus 7 ~~~~~~~~Ei~~~ 19 (59)
++.+.++.|+..+
T Consensus 11 EIL~EvrkEl~K~ 23 (40)
T PF08776_consen 11 EILEEVRKELQKV 23 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555443
No 80
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=28.98 E-value=38 Score=14.35 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=8.0
Q ss_pred ccCHHHHHHHHHH
Q psy5849 3 ALHPKIQQEVYDE 15 (59)
Q Consensus 3 ~~~p~~~~~~~~E 15 (59)
+++|+.+.+++.-
T Consensus 31 aRqPea~~~l~~~ 43 (66)
T PRK13466 31 ARQPEMQSKLMAG 43 (66)
T ss_pred HcChhHHHhHHHH
Confidence 4667766666543
No 81
>PRK06524 biotin carboxylase-like protein; Validated
Probab=28.34 E-value=43 Score=19.98 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=10.4
Q ss_pred CcccCHHHHHHHHH
Q psy5849 1 MLALHPKIQQEVYD 14 (59)
Q Consensus 1 ~l~~~p~~~~~~~~ 14 (59)
||++||++++.+..
T Consensus 89 ~~~~~~~~~~~~~~ 102 (493)
T PRK06524 89 YLLRHPETLEFIKR 102 (493)
T ss_pred hhhcCHHHHHHHHh
Confidence 57888888877754
No 82
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=28.04 E-value=48 Score=12.46 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHHHHhccCC
Q psy5849 40 TRVIKETLRLYP 51 (59)
Q Consensus 40 ~a~~~e~~R~~~ 51 (59)
..|+.|+.|+-.
T Consensus 8 ~~C~~Ev~~fLs 19 (45)
T smart00511 8 RECANEVSRFLS 19 (45)
T ss_pred HHHHHHHHHHHh
Confidence 457777777644
No 83
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=27.77 E-value=24 Score=17.60 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=13.0
Q ss_pred ccCHHHHHHHHHHHHHhhCC
Q psy5849 3 ALHPKIQQEVYDEIVQVLGD 22 (59)
Q Consensus 3 ~~~p~~~~~~~~Ei~~~~~~ 22 (59)
+.+|++-+.+.+++++.+..
T Consensus 119 L~~p~V~~~~K~~i~~i~~~ 138 (155)
T PF10777_consen 119 LQSPQVPDEIKQGIQRIIST 138 (155)
T ss_pred HcCCCCCHHHHHHHHHHHHh
Confidence 45666666777777776653
No 84
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=27.30 E-value=44 Score=14.65 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=8.0
Q ss_pred ccCHHHHHHHHHH
Q psy5849 3 ALHPKIQQEVYDE 15 (59)
Q Consensus 3 ~~~p~~~~~~~~E 15 (59)
+++|+.+.+++.-
T Consensus 39 aRqPe~~~~l~~~ 51 (78)
T PRK06876 39 ARQPELIPMLQTK 51 (78)
T ss_pred HcChHHHHhHHHH
Confidence 4667776666543
No 85
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=27.19 E-value=69 Score=13.99 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=11.9
Q ss_pred ccCHHHHHHHHHHHHHhh
Q psy5849 3 ALHPKIQQEVYDEIVQVL 20 (59)
Q Consensus 3 ~~~p~~~~~~~~Ei~~~~ 20 (59)
+.||+...++.+.+...+
T Consensus 61 ~~~p~~~~~Iy~~V~~rL 78 (87)
T PF14129_consen 61 SRNPEEYEKIYDKVIERL 78 (87)
T ss_pred HhCHHHHHHHHHHHHHHH
Confidence 467777777776665544
No 86
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=26.66 E-value=76 Score=15.65 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHhhC
Q psy5849 4 LHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 4 ~~p~~~~~~~~Ei~~~~~ 21 (59)
.+|.+|.++..|+-.++.
T Consensus 110 nD~~vQrKAi~EL~~V~~ 127 (138)
T PF00714_consen 110 NDLQVQRKAINELFKVMQ 127 (138)
T ss_dssp TCHHHHHHHHHCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 468899999999988876
No 87
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=25.66 E-value=85 Score=14.55 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHh
Q psy5849 5 HPKIQQEVYDEIVQV 19 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~ 19 (59)
.|++++.+.+|+.++
T Consensus 63 ~Pe~~kel~eel~kL 77 (99)
T PF05511_consen 63 GPEYEKELNEELEKL 77 (99)
T ss_dssp -THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 588999999998775
No 88
>COG3586 Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=27 Score=16.11 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCCHHHHhhcHHHHHHHHHHh
Q psy5849 26 TVPTYDQIQELHLLTRVIKETL 47 (59)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~e~~ 47 (59)
..+..++...+||+...++.+.
T Consensus 77 ~Ei~i~~~~~lpy~~gLirqa~ 98 (101)
T COG3586 77 VEIGIEDLANLPYIMGLIRQAF 98 (101)
T ss_pred EEEEEeehhhchHHHHHHHHHh
Confidence 3456678889999998887664
No 89
>KOG3964|consensus
Probab=25.23 E-value=1.1e+02 Score=18.12 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.7
Q ss_pred cccCHHHHHHHHHHHHHhhC
Q psy5849 2 LALHPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~~~ 21 (59)
+..+.+.++|++.|++....
T Consensus 420 vT~nqel~qrl~aE~e~L~~ 439 (469)
T KOG3964|consen 420 VTENQELQQRLHAEQEQLYQ 439 (469)
T ss_pred EecCHHHHHHHHHHHHHHHH
Confidence 35688999999999998865
No 90
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=25.19 E-value=63 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=12.2
Q ss_pred cccCHHHHHHHHHHHHHh
Q psy5849 2 LALHPKIQQEVYDEIVQV 19 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei~~~ 19 (59)
|..||++.+.+.+.+.+.
T Consensus 303 L~en~e~~~ei~~~ir~~ 320 (322)
T PF00154_consen 303 LKENPELAEEIEQKIREK 320 (322)
T ss_dssp HHHSHHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHh
Confidence 556777777777766654
No 91
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=24.64 E-value=82 Score=14.04 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy5849 5 HPKIQQEVYDEIVQVLG 21 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~ 21 (59)
.|+..+.+++|+..++.
T Consensus 35 ~p~~l~~lk~dIl~VIs 51 (86)
T PRK00296 35 EPDYLPQLRKEILEVIA 51 (86)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 47888999999988875
No 92
>PF14185 SpoIISB_antitox: Antitoxin SpoIISB, type II toxin-antitoxin system ; PDB: 3O6Q_B.
Probab=24.43 E-value=41 Score=13.73 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=12.9
Q ss_pred CCHHHHhhcHHHHHHHHHHhcc
Q psy5849 28 PTYDQIQELHLLTRVIKETLRL 49 (59)
Q Consensus 28 ~~~~~~~~~~~~~a~~~e~~R~ 49 (59)
.+..+..-.|++..++++.-|+
T Consensus 26 ~s~a~y~vSPht~Ri~kqnerl 47 (56)
T PF14185_consen 26 TSFAEYKVSPHTERIFKQNERL 47 (56)
T ss_dssp EEE------HHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHHHHHH
Confidence 4456667779999999988776
No 93
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=24.29 E-value=1.7e+02 Score=17.63 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCHHHHhhcHHHHHHHHHHhccCCCCcc
Q psy5849 8 IQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55 (59)
Q Consensus 8 ~~~~~~~Ei~~~~~~~~~~~~~~~~~~~~~~~~a~~~e~~R~~~~~~~ 55 (59)
-|+.+++-+...++...+..+..+|.-.|. .-.|-.+|-|+|+.|.
T Consensus 385 Tq~~vr~i~~~~y~~~p~G~pGndD~G~MS--aWyV~salG~YPv~pg 430 (502)
T PF07971_consen 385 TQEWVRRILDELYSNTPDGLPGNDDCGQMS--AWYVFSALGFYPVNPG 430 (502)
T ss_dssp HHHHHHHHHHHSB-SSTT-CSSTTTTTCCH--HHHHHHHHTEE-SSTT
T ss_pred HHHHHHHHHHHHhCCccCCCCCCcccchHH--HHHHHHHcCCCCCCCC
Confidence 356666666676764334556666666664 2245667889998665
No 94
>PF07167 PhaC_N: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; InterPro: IPR010941 This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond [].; GO: 0016746 transferase activity, transferring acyl groups, 0042619 poly-hydroxybutyrate biosynthetic process
Probab=23.91 E-value=62 Score=16.53 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=10.2
Q ss_pred CcccCHHHHHHHHHH
Q psy5849 1 MLALHPKIQQEVYDE 15 (59)
Q Consensus 1 ~l~~~p~~~~~~~~E 15 (59)
+++.||+++++..++
T Consensus 65 f~~tNP~~l~~~~et 79 (172)
T PF07167_consen 65 FLLTNPEVLRRTIET 79 (172)
T ss_pred ccccCHHHHHHHHhC
Confidence 357789887776543
No 95
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=23.84 E-value=51 Score=14.31 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=6.0
Q ss_pred ccCHHHHHHHH
Q psy5849 3 ALHPKIQQEVY 13 (59)
Q Consensus 3 ~~~p~~~~~~~ 13 (59)
+++|+...+++
T Consensus 37 aRqPe~~~~l~ 47 (74)
T PRK07558 37 LRNPSAADSQF 47 (74)
T ss_pred HcCchHHHhHH
Confidence 45666555554
No 96
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=23.34 E-value=57 Score=18.74 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=11.7
Q ss_pred cccCHHHHHHHHHHH
Q psy5849 2 LALHPKIQQEVYDEI 16 (59)
Q Consensus 2 l~~~p~~~~~~~~Ei 16 (59)
|..+|+.|+|+.+-.
T Consensus 191 L~~Dp~yq~rl~~g~ 205 (364)
T PF03605_consen 191 LDDDPEYQERLADGL 205 (364)
T ss_pred cccCHHHHHHHhccc
Confidence 567899999997643
No 97
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=23.17 E-value=54 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.2
Q ss_pred cccCHHHHHHHHHH
Q psy5849 2 LALHPKIQQEVYDE 15 (59)
Q Consensus 2 l~~~p~~~~~~~~E 15 (59)
|-.+|+.|+|+.+-
T Consensus 194 L~~Dp~yq~RL~~~ 207 (436)
T COG2704 194 LDDDPEYQKRLSEG 207 (436)
T ss_pred ccCCHHHHHHhhCc
Confidence 56789999999753
No 98
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=23.04 E-value=89 Score=18.97 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCC------CCCHHHHhhcHHHHHHHHHHhcc
Q psy5849 6 PKIQQEVYDEIVQVLGDDPET------VPTYDQIQELHLLTRVIKETLRL 49 (59)
Q Consensus 6 p~~~~~~~~Ei~~~~~~~~~~------~~~~~~~~~~~~~~a~~~e~~R~ 49 (59)
|++.+.+.+-|..+......+ .-+..|+..+||+.|+-+-..++
T Consensus 115 PHvt~ei~~~i~~~~~~~~~d~~i~EiGGTvGDiEs~pf~ea~rq~~~~~ 164 (525)
T TIGR00337 115 PHITNEIKDRIKRVAKISGPDVVIVEIGGTVGDIESLPFLEAIRQFRNEV 164 (525)
T ss_pred CCCcHHHHHHHHHhcccCCCCEEEEEeCCccccccccHHHHHHHHHHHhh
Confidence 555555555555543211111 12557888999999986655544
No 99
>PF09556 RE_HaeIII: HaeIII restriction endonuclease; InterPro: IPR019059 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease HaeIII, which recognises and cleaves the double-stranded sequence GG^CC.
Probab=22.17 E-value=64 Score=18.00 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.6
Q ss_pred hcHHHHHHHHHHhccCC
Q psy5849 35 ELHLLTRVIKETLRLYP 51 (59)
Q Consensus 35 ~~~~~~a~~~e~~R~~~ 51 (59)
-.|.+.|++.|..|.+-
T Consensus 171 YiPLL~AF~~Ei~r~~~ 187 (300)
T PF09556_consen 171 YIPLLKAFIDEINRLYE 187 (300)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 46999999999999863
No 100
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=21.15 E-value=57 Score=13.80 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhC
Q psy5849 7 KIQQEVYDEIVQVLG 21 (59)
Q Consensus 7 ~~~~~~~~Ei~~~~~ 21 (59)
+..+.+++|+..++.
T Consensus 25 ~~l~~lk~eil~vis 39 (70)
T PF03776_consen 25 DYLEQLKKEILEVIS 39 (70)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888887764
No 101
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=20.47 E-value=63 Score=11.16 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=6.8
Q ss_pred ccCHHHHHHHH
Q psy5849 3 ALHPKIQQEVY 13 (59)
Q Consensus 3 ~~~p~~~~~~~ 13 (59)
..||+-.+|++
T Consensus 5 TQhp~~lekIq 15 (28)
T PF06582_consen 5 TQHPESLEKIQ 15 (28)
T ss_pred ccCHHHHHHHH
Confidence 35677666664
No 102
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=20.21 E-value=1e+02 Score=13.55 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy5849 5 HPKIQQEVYDEIVQVLGD 22 (59)
Q Consensus 5 ~p~~~~~~~~Ei~~~~~~ 22 (59)
.|++.+-+++-+..++|.
T Consensus 23 s~ev~e~m~~~v~~llG~ 40 (86)
T PF05542_consen 23 SPEVLEAMKQHVSGLLGN 40 (86)
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 588999999999999885
No 103
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=20.05 E-value=1e+02 Score=16.56 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=13.6
Q ss_pred CCCCHHHHhhcHHHHHHHHHHhc
Q psy5849 26 TVPTYDQIQELHLLTRVIKETLR 48 (59)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~e~~R 48 (59)
...+...+...+.++..++|.+|
T Consensus 200 vv~sl~~l~~~~~ld~~lre~lr 222 (230)
T PF10189_consen 200 VVPSLSPLFDNPKLDPELRELLR 222 (230)
T ss_pred CcCChHHhcCCcccCHHHHHHHH
Confidence 34455555566666666666655
Done!