RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5849
(59 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 68.8 bits (169), Expect = 8e-16
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP 54
LA HP++Q+++ +EI +V+GD PTYD +Q + L VIKETLRL+P P
Sbjct: 288 LAKHPEVQEKLREEIDEVIGDK--RSPTYDDLQNMPYLDAVIKETLRLHPVVP 338
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 54.8 bits (132), Expect = 7e-11
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58
+LA +P Q +V E+ +V G + P+ D + +L LL VI E+LRLYP A ++ +
Sbjct: 342 LLASNPTWQDKVRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPR 396
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 49.7 bits (119), Expect = 4e-09
Identities = 13/51 (25%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYP 51
+L+ HP++ + +E +V+G + + ++++++E+H L + E++RL+P
Sbjct: 319 LLSKHPEVASAIREEADRVMGPN-QEAASFEEMKEMHYLHAALYESMRLFP 368
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 47.8 bits (114), Expect = 2e-08
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
LA +P Q+ +Y EI +V GD E V T + + L L V ETLR Y P++
Sbjct: 289 LAKNPDKQERLYREIREVCGD--ERV-TEEDLPNLPYLNAVFHETLRKYSPVPLL 340
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 46.8 bits (111), Expect = 4e-08
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59
+L+ P + ++ +E+ VLGD PT + +++L TRVI E+LRLYP P++ ++
Sbjct: 417 LLSKEPSVVAKLQEEVDSVLGD---RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRR 472
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 45.9 bits (109), Expect = 9e-08
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 5 HPKIQQEVYDEIVQVLGDD-PETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
HP+IQ+++ DE+ VLG T P +L L V+KETLRL+ A P++
Sbjct: 323 HPEIQKKLRDELDTVLGPGNQVTEPD---THKLPYLQAVVKETLRLHMAIPLL 372
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 43.6 bits (103), Expect = 5e-07
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59
+L+ +P+ ++ +E+ +VL P PTY+ I+EL LTR I E++RLYP P++ ++
Sbjct: 304 LLSKNPEALRKAQEELDRVLQGRP---PTYEDIKELKYLTRCINESMRLYPHPPVLIRR 359
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 42.4 bits (100), Expect = 1e-06
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP 54
ML +P+IQ++ Y+EI + + Q +IKETLR P +P
Sbjct: 309 MLCNYPEIQEKAYNEIKSTVNGRNKV--LLSDRQSTPYTVAIIKETLRYKPVSP 360
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 41.7 bits (98), Expect = 3e-06
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 18/72 (25%)
Query: 1 MLALHPKIQQEVYDEI--------VQVLGDDPETVP----------TYDQIQELHLLTRV 42
M+ ++P + +++Y E+ + +D ++ TYD + +L L V
Sbjct: 318 MIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAV 377
Query: 43 IKETLRLYPAAP 54
I ETLRLYPA P
Sbjct: 378 ITETLRLYPAVP 389
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 35.1 bits (81), Expect = 6e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 18/57 (31%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58
L HP ++ E + LL V++ETLRLYP P+ +
Sbjct: 263 LLRHPDQLAKLRAE------------------PDRPLLEAVVEETLRLYPPVPLARR 301
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 34.8 bits (80), Expect = 7e-04
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L HP I ++ +E+ V+G D + + + +L L VIKET RL+P+ P+
Sbjct: 324 LIRHPDILKKAQEELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPL 375
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 34.9 bits (80), Expect = 7e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAA 53
L +P IQ +++DEI GDD E V D + ++ L V+ E LR +P A
Sbjct: 333 LVKNPSIQSKLHDEIKAKTGDDQEEVSEED-VHKMPYLKAVVLEGLRKHPPA 383
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 34.8 bits (80), Expect = 7e-04
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 5 HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP 54
+P++ +++ +E+ V+G + + L+ L V++ET R++PA P
Sbjct: 326 NPRVLRKIQEELDSVVG--RNRMVQESDLVHLNYLRCVVRETFRMHPAGP 373
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 32.7 bits (74), Expect = 0.004
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
L +P+ ++ DE+ V+GD + + + I L L VIKE+LRL P PI+
Sbjct: 315 LIKYPEAMKKAQDEVRNVIGD--KGYVSEEDIPNLPYLKAVIKESLRLEPVIPIL 367
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 30.6 bits (69), Expect = 0.027
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
P+ + V E+ V+G + V D +++L L +KETLRL+P P++
Sbjct: 335 PEDLKRVQQELADVVGLN-RRVEESD-LEKLTYLKCTLKETLRLHPPIPLL 383
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 29.7 bits (67), Expect = 0.044
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 HPKIQQEVYDEIVQVLGDDPET--VPTYDQIQELHLLTRVIKETLRL 49
HP++ Q+ E ++ P T ++++ L++VI ETLRL
Sbjct: 317 HPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRL 363
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 29.7 bits (66), Expect = 0.048
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
L +P++ ++ E+ + + + T T D ++ L ++KETLR+ P P++
Sbjct: 316 LMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLL 370
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 29.0 bits (65), Expect = 0.094
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
P I + ++E+ QV+G + V + + +L L + KE+ R +P+ P+
Sbjct: 320 PSILKRAHEEMDQVIGRNRRLVES--DLPKLPYLQAICKESFRKHPSTPL 367
>gnl|CDD|198457 cd10314, FAM20_C, C-terminal putative kinase domain of FAM20
(family with sequence similarity 20) proteins. This
family contains the C-terminal domain of FAM20A, -B, -C
and related proteins. FAM20A may participate in enamel
development and gingival homeostasis, FAM20B in
proteoglycan production, and FAM20C in bone development.
FAM20B is a xylose kinase that may regulate the number
of glycosaminoglycan chains by phosphorylating the
xylose residue in the glycosaminoglycan-protein linkage
region of proteoglycans. FAM20C, also called Dentin
Matrix Protein 4, is abundant in the dentin matrix, and
may participate in the differentiation of mesenchymal
precursor cells into functional odontoblast-like cells.
Mutations in FAM20C are associated with lethal
Osteosclerotic Bone Dysplasia (Raine Syndrome), and
mutations in FAM20A with Amelogenesis imperfecta (AI)
and Gingival Hyperplasia Syndrome. The C-terminal
domains of members of this family are putative kinase
domains, based on mutagenesis of the C-terminal domain
of Drosophila Four-Jointed, a related Golgi kinase. This
domain family is also known as DUF1193.
Length = 209
Score = 27.6 bits (62), Expect = 0.26
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 29 TYDQIQELH----LLTRVIKETLRLYPAAPIIAKK 59
T+ ++Q L L+ +++E+L P +P++ +
Sbjct: 151 TWLRLQLLAKGGGSLSDLLRESLSHDPLSPVLTEP 185
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 27.6 bits (61), Expect = 0.30
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPE-TVPTYDQIQELHLLTRVIKETLRL 49
LA +P + + V +E + + D E T++ +++ L +RVI+ETLR+
Sbjct: 291 LAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRV 339
>gnl|CDD|198458 cd10467, FAM20_C_like, C-terminal putative kinase domain of FAM20
(family with sequence similarity 20), Drosophila
Four-jointed (Fj), and related proteins. Drosophila Fj
is a Golgi kinase that phosphorylates Ser or Thr
residues within extracellular cadherin domains of a
transmembrane receptor Fat and its ligand, Dachsous
(Ds). The Fat signaling pathway regulates growth, gene
expression, and planar cell polarity (PCP). Defects from
mutation in the Drosophila fj gene include loss of the
intermediate leg joint, and a PCP defect in the eye.
Fjx1, the murine homologue of Fj, has been shown to be
involved in both the Fat and Hippo signaling pathways,
these two pathways intersect at multiple points. The
Hippo pathway is important in organ size control and in
cancer. FAM20B is a xylose kinase that may regulate the
number of glycosaminoglycan chains by phosphorylating
the xylose residue in the glycosaminoglycan-protein
linkage region of proteoglycans. This domain has
homology to a kinase-active site, mutation of three
conserved Asp residues at the Drosophila Fj putative
active site abolished its ability to phosphorylate Ft
and Ds cadherin domains. FAM20A may participate in
enamel development and gingival homeostasis, FAM20B in
proteoglycan production, and FAM20C in bone development.
FAM20C, also called Dentin Matrix Protein 4, is abundant
in the dentin matrix, and may participate in the
differentiation of mesenchymal precursor cells into
functional odontoblast-like cells. Mutations in FAM20C
are associated with lethal Osteosclerotic Bone Dysplasia
(Raine Syndrome), and mutations in FAM20A with
Amelogenesis imperfecta (AI) and Gingival Hyperplasia
Syndrome. This model includes the FAM20_C domain family,
previously known as DUF1193; FAM20_C appears to be
homologous to the catalytic domain of the
phosphoinositide 3-kinase (PI3K)-like family.
Length = 210
Score = 27.2 bits (61), Expect = 0.34
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 28 PTYDQIQELHL----LTRVIKETLRLYPAAPIIAKK 59
T++++ LH L+R+++E+LR P P++ +
Sbjct: 153 STWERLLLLHRGGGVLSRLLRESLRHDPLLPVLTEP 188
>gnl|CDD|216690 pfam01767, Birna_VP3, Birnavirus VP3 protein. VP3 is a minor
structural component of the virus. The large RNA segment
of birnaviruses codes for a polyprotein
(N-VP2-VP4-VP3-C).
Length = 229
Score = 26.8 bits (59), Expect = 0.48
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 10 QEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIK 44
YDE+ V ++ P +Q+++L LL R +K
Sbjct: 193 DAFYDEVAAVYAENQGRGPNQEQMRDLRLLARRMK 227
>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional.
Length = 239
Score = 26.4 bits (58), Expect = 0.72
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVP 28
++A H K ++VYD IV+ +P +
Sbjct: 35 LVARHQKKLEKVYDAIVEAGHPEPFAIR 62
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 25.9 bits (57), Expect = 1.0
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPA 52
V+G + +Y Q L L V+ L ++P
Sbjct: 292 VIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPI 325
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 25.8 bits (56), Expect = 1.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAA 53
P+I + +EI +V+G E I +L+ + +I+E RL+P A
Sbjct: 358 PEILHKAMEEIDRVVGK--ERFVQESDIPKLNYVKAIIREAFRLHPVA 403
>gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate
synthase BshA. Members of this protein family are BshA,
a glycosyltransferase required for bacillithiol
biosynthesis. This enzyme combines UDP-GlcNAc and
L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate
synthase. Bacillithiol is a low-molecular-weight thiol,
an analog of glutathione and mycothiol, and is found
largely in the Firmicutes [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 374
Score = 25.6 bits (57), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 7 KIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRV 42
++QQEV +++ V GD PE P ++EL L RV
Sbjct: 223 RVQQEVPAKLLLV-GDGPERSPAEQLVRELGLTDRV 257
>gnl|CDD|215228 PLN02408, PLN02408, phospholipase A1.
Length = 365
Score = 25.6 bits (56), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 2 LALHPKIQQEVYDEIVQVL---GDDP 24
A+ P +Q+ V +EI ++L GD+P
Sbjct: 174 TAMGPSLQEMVREEIARLLQSYGDEP 199
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 25.4 bits (55), Expect = 2.0
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAP 54
+L+ HP++ ++ EI D E +++L L + E++RLYP P
Sbjct: 327 LLSKHPQVMAKIRHEINTKF--DNE------DLEKLVYLHAALSESMRLYPPLP 372
>gnl|CDD|185003 PRK15043, PRK15043, transcriptional regulator MirA; Provisional.
Length = 243
Score = 25.3 bits (55), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 22 DDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
D ET+ TY Q LH L IKE + YPA +
Sbjct: 83 DQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTT 118
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 24.8 bits (55), Expect = 2.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 31 DQIQELHLLTRVIKETLRLY 50
+ +EL LL ++ETL+ Y
Sbjct: 695 PRSRELQLLAAGVRETLQRY 714
>gnl|CDD|217802 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1).
This family consists of the beta-glucan
synthesis-associated proteins KRE6 and SKN1.
Beta1,6-Glucan is a key component of the yeast cell
wall, interconnecting cell wall proteins,
beta1,3-glucan, and chitin. It has been postulated that
the synthesis of beta1,6-glucan begins in the
endoplasmic reticulum with the formation of
protein-bound primer structures and that these primer
structures are extended in the Golgi complex by two
putative glucosyltransferases that are functionally
redundant, Kre6 and Skn1. This is followed by maturation
steps at the cell surface and by coupling to other cell
wall macromolecules.
Length = 505
Score = 24.9 bits (55), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 20 LGDDPETVPTYDQIQELHL 38
+G DP PT D I++ H
Sbjct: 461 VGCDPPDYPTTDYIEK-HP 478
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase)
and shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054)
[Amino acid biosynthesis, Aspartate family].
Length = 302
Score = 24.7 bits (54), Expect = 2.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLY 50
+ QE D ++ G+ E +PT +L+ +V K L
Sbjct: 33 DVVAQESDDTEIEAEGEGVEKIPTEPTD---NLIYQVAKRFLDQL 74
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 25.0 bits (54), Expect = 2.7
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 5 HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAA 53
+P+I ++ E+ +V+G D V D I L+ L +ET R++P+A
Sbjct: 344 NPEILRKALKELDEVVGKD-RLVQESD-IPNLNYLKACCRETFRIHPSA 390
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 24.2 bits (52), Expect = 4.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 10 QEVYDEIVQVLGDDPETVPTYDQIQEL 36
+E+Y+ +++ + PE PT++ IQ +
Sbjct: 230 EELYNIMMRCWKNRPEERPTFEYIQSV 256
>gnl|CDD|220425 pfam09822, ABC_transp_aux, ABC-type uncharacterized transport
system. This domain is found in various eukaryotic and
prokaryotic intra-flagellar transport proteins involved
in gliding motility, as well as in several hypothetical
proteins.
Length = 268
Score = 23.8 bits (52), Expect = 5.4
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 7 KIQQEVYDEIVQVLGDDPETVPTYDQIQELHL---LTRVIKETLR 48
+Y +V GD E +P D + +L LTR I++ R
Sbjct: 98 SSVVTIYFGLVVEYGDKREVIPFLDNVSLQNLEYELTRAIQKVTR 142
>gnl|CDD|223818 COG0747, DdpA, ABC-type dipeptide transport system, periplasmic
component [Amino acid transport and metabolism].
Length = 556
Score = 24.1 bits (52), Expect = 5.6
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQ 32
P ++ +Y E ++L ++ +P Y
Sbjct: 497 PAKRKALYKEAQKILLEEAPYIPLYQS 523
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 23.7 bits (51), Expect = 6.5
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
++ +++ D + + GD PE + + L LL RVI +
Sbjct: 122 LIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLAL 177
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 23.6 bits (51), Expect = 7.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 9 QQEVYDEIVQVLGDDPETVPTYDQI--QELHLLTR 41
Q + +QVL D+ + + T Q Q L+ LTR
Sbjct: 217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTR 251
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 23.1 bits (50), Expect = 9.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 2 LALHPKIQQ-EVYDEIVQVLGDDPETVPTYDQIQEL 36
+ L P I Q E D+I+ V DDPE Y I+EL
Sbjct: 99 IGLMPMIDQGEKDDKIIAVCADDPEYR-HYTDIKEL 133
>gnl|CDD|213366 cd12832, TmCorA-like_u3, Uncharacterized subfamily of the
Thermotoga maritima CorA-like family. This subfamily
belongs to the Thermotoga maritima CorA (TmCorA)-like
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. Members of the
TmCorA-like family are found in all three kingdoms of
life. It is a functionally diverse family which includes
the CorA Co2+ transporter from the hyperthermophilic
Thermotoga maritima, and three Saccharomyces cerevisiae
proteins: two located in the plasma membrane: the Mg2+
transporter Alr1p/Swc3p and the putative Mg2+
transporter, Alr2p, and the vacuole membrane protein
Mnr2p, a putative Mg2+ transporter. Thermotoga maritima
CorA forms funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by a related protein, Saccharomyces cerevisiae
Alr1p. Natural variants in this signature sequence may
be associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 287
Score = 23.3 bits (51), Expect = 9.8
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKE 45
+L L Q+V D+I L DP T D + +L L + E
Sbjct: 166 VLNLT----QDVIDKIDTPLKSDPYTQDLRDLLIKLLSLYDELHE 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.389
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,163,276
Number of extensions: 228389
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 46
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)