RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5849
(59 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 81.9 bits (203), Expect = 1e-20
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L+ P+I + E+ +V+G ++ + L L++V+KE+LRLYP A
Sbjct: 270 LSRQPEIVARLQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTF 323
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 80.5 bits (199), Expect = 3e-20
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59
++A HP +++ + EI V+G+ D IQ+L ++ I E++R P ++ +K
Sbjct: 321 LIAKHPNVEEAIIKEIQTVIGERD---IKIDDIQKLKVMENFIYESMRYQPVVDLVMRK 376
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 77.3 bits (191), Expect = 4e-19
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
LA HP+ + DE+ V G P ++ +++L VI E +RL PA ++
Sbjct: 290 LADHPEHADRIRDEVEAVTGGRP---VAFEDVRKLRHTGNVIVEAMRLRPAVWVLT 342
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 77.3 bits (191), Expect = 4e-19
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
LA +Q++ Y E V G++ + TYDQ+++L+LL R IKETLRL P I+
Sbjct: 279 LARDKTLQKKCYLEQKTVCGENLPPL-TYDQLKDLNLLDRCIKETLRLRPPIMIM 332
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 77.3 bits (191), Expect = 4e-19
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L H V DE+ ++ GD ++ ++++ L V+KETLRL+P I+
Sbjct: 272 LMRHRDAYAAVIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILM 325
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 76.9 bits (190), Expect = 6e-19
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L +P + Q+ +E +VL D P+Y Q+++L + V+ E LRL+P AP +
Sbjct: 280 LVKNPHVLQKAAEEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFS 332
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 73.4 bits (180), Expect = 1e-17
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 2 LAL-HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAKK 59
+ L + ++ +EI + + T + I+++ L V+ E+LR+ P P K
Sbjct: 292 IGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGK 350
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 71.4 bits (176), Expect = 4e-17
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
LA HP +QQ++ +EI VL + PTYD + ++ L V+ ETLRL+P A +
Sbjct: 299 LATHPDVQQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRL 351
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 71.2 bits (175), Expect = 6e-17
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L+ +P+ Q+ + E+ VL D+ P + ++ + L +KE++RL P+ P
Sbjct: 310 LSRNPQAQRRLLQEVQSVLPDN--QTPRAEDLRNMPYLKACLKESMRLTPSVPFTT 363
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 70.7 bits (173), Expect = 1e-16
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
+ ++ + +EI V+ + + T I+++ L V+ E LR P
Sbjct: 310 IGRAGHQVHNRLAEEIRSVIKSNGGEL-TMGAIEKMELTKSVVYECLRFEPPVTAQ 364
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 70.0 bits (172), Expect = 2e-16
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+A + K+Q + E++ +Q + LL IKETLRL+P + +
Sbjct: 302 MARNLKVQDMLRAEVLAARHQA--QGDMATMLQLVPLLKASIKETLRLHPISVTLQ 355
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 69.4 bits (170), Expect = 3e-16
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVP-----TYDQIQELHLLTRVIKETLRLYPAAPII 56
L +P+ V E+ +L + V + +L V+ E+LRL A I
Sbjct: 289 LLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFIT 348
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 67.4 bits (165), Expect = 1e-15
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVP--------TYDQIQELHLLTRVIKETLRLYPAA 53
+ +P+ + +E+ + L + + V + ++ +L +L +IKE+LRL A+
Sbjct: 284 MIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSAS 343
Query: 54 PII 56
I
Sbjct: 344 LNI 346
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 63.8 bits (156), Expect = 2e-14
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 2 LALHPKI--QQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
L + + + EI + + + E+ R +E++R P ++
Sbjct: 280 LMHPANVKHLEALRKEIEEFPAQLN----YNNVMDEMPFAERCARESIRRDPPLLML 332
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 63.5 bits (155), Expect = 4e-14
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
+L H I++ V E ++ T + ++++ L +V++E LRL P
Sbjct: 269 LLGQHSDIRERVRQEQNKLQLSQE---LTAETLKKMPYLDQVLQEVLRLIPPVGGG 321
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 59.2 bits (144), Expect = 1e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
L HP+ + V +EI + + ++ + + V+ ETLRL AA I
Sbjct: 280 LLTHPEALRAVREEI-----QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALIT 329
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 50.3 bits (121), Expect = 2e-09
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 20/56 (35%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L+ P Q+ V + L +E LRLYP A I+
Sbjct: 237 LSHRPDWQKRVAESEEAALA--------------------AFQEALRLYPPAWILT 272
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 45.7 bits (109), Expect = 7e-08
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 LALHPKIQQEVYDEIVQVLG-DDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L HP+IQ+ + +E+ + LG + TY L LL I E LRL P P+
Sbjct: 306 LLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPL 360
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 44.1 bits (105), Expect = 2e-07
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L +P++++++Y+EI Q +G PT L LL I+E LRL P AP+
Sbjct: 300 LLHNPQVKKKLYEEIDQNVG--FSRTPTISDRNRLLLLEATIREVLRLRPVAPM 351
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 43.1 bits (102), Expect = 5e-07
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 15 EIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+ L +Q+ ++E R YP P +
Sbjct: 252 FVAHALQTCSGI--RAALVQQPDYAELFVQEVRRFYPFFPAVV 292
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 41.8 bits (99), Expect = 2e-06
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
+P +Q V E+ QV+G + +P L + + E +R P+
Sbjct: 306 FTRYPDVQTRVQAELDQVVG--RDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPV 357
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 41.0 bits (97), Expect = 3e-06
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L P+IQ+++ E+ V+G E P +L L I ET R P
Sbjct: 309 LVTKPEIQRKIQKELDTVIG--RERRPRLSDRPQLPYLEAFILETFRHSSFLPF 360
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 40.8 bits (96), Expect = 3e-06
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 19/57 (33%)
Query: 1 MLALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
L HPK ++ + ++E R YP P +
Sbjct: 257 ALHEHPKYKEWLRSG-------------------NSREREMFVQEVRRYYPFGPFLG 294
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 40.2 bits (95), Expect = 5e-06
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
+AL+P IQ +V EI ++G P P++D ++ V+ E LR P+
Sbjct: 300 MALYPNIQGQVQKEIDLIMG--PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPL 351
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 40.2 bits (95), Expect = 6e-06
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
+ LHP +Q+ V EI V+G P + T VI E R P+
Sbjct: 299 MILHPDVQRRVQQEIDDVIG--QVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPL 350
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 39.1 bits (92), Expect = 1e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L HP++ +V +EI +V+G P + V+ E R P
Sbjct: 296 LLKHPEVTAKVQEEIERVIG--RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPT 347
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 38.7 bits (91), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L +P+I++++++EI +V+G P +P QE+ + V+ E R P
Sbjct: 294 LMKYPEIEEKLHEEIDRVIG--PSRIPAIKDRQEMPYMDAVVHEIQRFITLVPS 345
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 38.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
+ +P + + V EI QV+G P D ++ VI E RL P
Sbjct: 295 MLKYPHVTERVQKEIEQVIG--SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPF 346
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 38.3 bits (90), Expect = 3e-05
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
L HP+++ +V++EI +V+G P ++ ++ + VI E R P+
Sbjct: 295 LMKHPEVEAKVHEEIDRVIG--KNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.009
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 34 QELHLLTRVIKETLRLY-P-AAPIIAKK 59
Q L + ++ +L+LY +AP +A K
Sbjct: 20 QAL----KKLQASLKLYADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.068
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Query: 3 ALHPKIQQEVYDEIVQVLGDD---PETV--------PTYDQ---IQELH---LLTRVIKE 45
L P ++++D + V P + D + +LH L+ + KE
Sbjct: 365 VLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 46 -TLRLY 50
T+ +
Sbjct: 424 STISIP 429
Score = 27.9 bits (61), Expect = 0.13
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 6 PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPII 56
P + +Y E L +D + Y + L ++ + L L PA ++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVL 154
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate
immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Length = 180
Score = 26.7 bits (59), Expect = 0.38
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+G P QI+ L RL P I A
Sbjct: 108 FIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYA 146
>2f2l_X Peptidoglycan recognition protein-LC isoform LCX;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 167
Score = 26.3 bits (58), Expect = 0.51
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+G P Q++ LL + +L +
Sbjct: 101 FIGTFTTRKPNERQLEACQLLLQEGVRLKKLTTNYRLYG 139
>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL,
pattern recognition, PGRP, glycoprotein, immune
response, secreted,; 1.50A {Drosophila melanogaster}
Length = 169
Score = 25.9 bits (57), Expect = 0.64
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+G+ E P + + L + +L ++
Sbjct: 102 FIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLG 140
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 25.6 bits (57), Expect = 0.93
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 10 QEVYDEIVQVLGDDPETVP------TYDQIQEL 36
++V I + G P+ T + Q+L
Sbjct: 50 RQVASHINEETGRQPQWFILDLLTCTSENCQQL 82
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 25.3 bits (56), Expect = 0.97
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 2 LALHPKIQQEVYDEIVQVLGDDPETVPTY 30
+ + PK+ + EI +LG+ P + Y
Sbjct: 337 IQVLPKLSSSIVHEIDSILGNKPYSKKDY 365
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 24.5 bits (53), Expect = 2.2
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
++GD +P + L + PA ++
Sbjct: 113 LIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLLG 151
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune
system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB:
2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Length = 163
Score = 24.4 bits (53), Expect = 2.3
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 19 VLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIA 57
+G E P ++ L + L P ++
Sbjct: 99 FIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMG 137
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 24.4 bits (54), Expect = 2.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 12 VYDEIVQVLGDDPETVPTY----DQIQELHLLTRVIKE 45
VYD++ L + + P +Q++ L + + E
Sbjct: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGE 349
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 24.4 bits (54), Expect = 2.5
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P I +YD ++ V ++
Sbjct: 229 PDILDTSIYDGVITVTTEE 247
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 24.2 bits (53), Expect = 2.9
Identities = 1/18 (5%), Positives = 7/18 (38%)
Query: 6 PKIQQEVYDEIVQVLGDD 23
++ + +V ++
Sbjct: 305 WINMLDISYTLAEVTLEE 322
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 24.0 bits (53), Expect = 3.1
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
PKI + V DE++ V ++
Sbjct: 230 PKILDRSVIDEVITVEDEE 248
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 24.0 bits (53), Expect = 3.2
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P+ + D ++QV +D
Sbjct: 226 PENLDLSLLDGVIQVWEED 244
>4dkc_A Interleukin-34, IL-34; dimeric four-helix bundle cytokine,
activating CSF-1R, CSF-1 receptor, glycosylation,
cytokine; HET: NAG BMA; 1.85A {Homo sapiens} PDB:
4dke_A* 4dkf_A* 4dkd_A* 4exp_A* 4exn_A*
Length = 190
Score = 24.0 bits (51), Expect = 3.3
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 8 IQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPIIAK 58
+ + + VL E P++ +QE+ L +++ L +P +
Sbjct: 80 VSLSATESVQDVL---LEGHPSWKYLQEVETLLLNVQQGLTDVEVSPKVES 127
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 23.5 bits (51), Expect = 4.6
Identities = 5/19 (26%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
PK Q++ DE++ + ++
Sbjct: 340 PKNLDQKIMDEVIAISSEE 358
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 23.6 bits (52), Expect = 4.8
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P I + DE++ + D
Sbjct: 218 PGIFNASLVDEVLDIHQRD 236
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 23.3 bits (51), Expect = 5.2
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P I ++E DEI+ + D
Sbjct: 243 PDIYKKEFVDEIIPIKTQD 261
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 23.3 bits (51), Expect = 5.5
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P + + + DE++ V GDD
Sbjct: 237 PDVLDRSLIDEVLCVAGDD 255
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 23.2 bits (51), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P + Q++ DEI+ V +D
Sbjct: 232 PPVLDQDLVDEIITVGNED 250
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 23.2 bits (51), Expect = 5.9
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P + ++ DE+VQV D+
Sbjct: 232 PSVLNVDLIDEVVQVSSDE 250
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 23.2 bits (51), Expect = 6.2
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
PK + D + V D
Sbjct: 235 PKNLDLSIIDRVETVDSDT 253
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 22.9 bits (50), Expect = 6.8
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L + ++E LY A
Sbjct: 108 IDEIHRLNKAVEEL--LYSA 125
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 22.9 bits (50), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L+ I+E LYPA
Sbjct: 112 IDEIHRLSPAIEEV--LYPA 129
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 22.9 bits (50), Expect = 7.9
Identities = 4/19 (21%), Positives = 7/19 (36%), Gaps = 1/19 (5%)
Query: 6 PKI-QQEVYDEIVQVLGDD 23
P++ E+ V D
Sbjct: 230 PELYDPEILTARYSVGAVD 248
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 22.9 bits (50), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 33 IQELHLLTRVIKETLRLYPA 52
I E+H L+R +E LYPA
Sbjct: 96 IDEIHRLSRQAEEH--LYPA 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.389
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 935,669
Number of extensions: 42967
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 57
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)