RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5849
         (59 letters)



>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
           chain {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 670

 Score = 28.1 bits (61), Expect = 0.045
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 5   HPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLY 50
             K   E Y    +  G D     TY +++ LH      +ET   Y
Sbjct: 588 PQKGLFEEYAAFGRGHGHDLAPFDTYHEVRGLHWPVVEGEETRWRY 633


>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 27.1 bits (59), Expect = 0.082
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 4   LHPKIQQEVYDEIVQVLGDDPETVPTYDQIQEL--HLLTR 41
           L      E    +        +  P Y  +++L  +L  R
Sbjct: 240 LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 279


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 24.8 bits (53), Expect = 0.63
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 4   LHPKIQQEVYDEIVQVLGDDPETVPTYDQIQEL 36
           L     +E Y  +        +  P YD +Q L
Sbjct: 240 LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL 272


>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
           {Escherichia coli [TaxId: 562]}
          Length = 499

 Score = 24.0 bits (50), Expect = 1.5
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 6   PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKETLRLYPAAPI 55
              +Q +Y +I+  L D+   +P             V K  L   P API
Sbjct: 442 ETQRQALYRDILTRLHDEAVYLPISYISM-----MVVSKPELGNIPYAPI 486


>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 453

 Score = 23.7 bits (51), Expect = 1.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 3   ALHPKIQQEVYDEIVQVLGDDPETV 27
           A    + +E++  +   LG+ PET 
Sbjct: 206 ATQDVMMEEIFRVVCICLGNPPETF 230


>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 311

 Score = 23.2 bits (49), Expect = 2.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 6   PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKET 46
                E+YD +      DP   PT+ QI  + L+ + I E+
Sbjct: 271 EHAPAEMYDIMKTCWDADPLKRPTFKQI--VQLIEKQISES 309


>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 22.8 bits (48), Expect = 2.9
 Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 2   LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKE 45
           L + P     +Y  + +    DP   P + ++     L+ +++E
Sbjct: 228 LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL--KAQLSTILEE 269


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 22.4 bits (47), Expect = 5.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 6   PKIQQEVYDEIVQVLGDDPETVPTYDQIQEL 36
           P+  + ++D + Q    +PE  PT++ +Q  
Sbjct: 237 PECPESLHDLMCQCWRKEPEERPTFEYLQAF 267


>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 309

 Score = 21.7 bits (45), Expect = 7.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 6   PKIQQEVYDEIVQVLGDDPETVPTYDQIQELHLLTRVIKE 45
                EVYD + Q   + P   P++ QI  L  L R+++E
Sbjct: 249 LNCDDEVYDLMRQCWREKPYERPSFAQI--LVSLNRMLEE 286


>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 21.6 bits (45), Expect = 7.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 2   LALHPKIQQEVYDEIVQVLGDDPETVPTYDQIQEL 36
           L       Q++Y+ +VQ     PE  PT+  +++ 
Sbjct: 234 LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 223,148
Number of extensions: 8117
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 16
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)