BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy585
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 1 YELKLAASDNLKENYTT---VVIHVKDVNDNPPVFERPTYRTQITE 43
Y L + A+D E +T VI VKD+NDN PVF TY+ Q+ E
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPE 232
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 56 YELTLVASDSLNENKTT---VVIHINDVNDMPPVFNTSLYPAIMEE 98
Y L + A+D E +T VI + D+ND PVFN S Y + E
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPE 232
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1 YELKLAASDNLKENYTTV--VIHVKDVNDNPPVFERPTYRTQITEED 45
Y L + A+++ T+V I V DVNDN P FE P Y+ +ED
Sbjct: 291 YSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDED 337
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 18 VVIHVKDVNDNPPVF 32
V+I VKDVND PP F
Sbjct: 97 VIILVKDVNDEPPYF 111
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 43 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 102
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 103 NRPEFTQEVFEGSVAEGAVPG 123
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 105
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPG 126
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 105
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPG 126
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 45 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 104
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 105 NRPEFTQEVFEGSVAEGAVPG 125
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ E+ +VI + D ND
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQND 105
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPG 126
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1 YELKLAASDNLKENYTT---VVIHVKDVNDNPPVF 32
Y L + A+D E +T VI VKD+NDN PVF
Sbjct: 189 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 223
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 56 YELTLVASDSLNENKTT---VVIHINDVNDMPPVFNTS 90
Y L + A+D E +T VI + D+ND PVFN S
Sbjct: 189 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 13 ENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
N T VI V DVNDNPP F T+ ++ E
Sbjct: 204 SNTATAVITVTDVNDNPPEFTAMTFYGEVPE 234
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 51 KRVLQYELTLVASDSLN------ENKTTVVIHINDVNDMPPVFNTSLY 92
++V QY L + A+D N T VI + DVND PP F +
Sbjct: 181 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTF 228
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y ++ E+ +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 27 DNPPV----FERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
D PPV ER T ++T+ DR + + Y + ++ + +VI + D ND
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQND 103
Query: 83 MPPVFNTSLY-PAIMEEELPG 102
P F ++ ++ E +PG
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPG 124
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 55 QYELTLVASDSLNEN---KTTVVIHINDVNDMPPVFNTSLYPAIMEE 98
+Y LT+ A+D + +I I D ND P+F+ Y A++ E
Sbjct: 341 EYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 387
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 18 VVIHVKDVNDNPPVFERPTYRTQITE 43
+I + D NDN P+F+ TY + E
Sbjct: 362 AIIQITDANDNAPIFDPKTYTALVPE 387
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 17 TVVIHVKDVNDNPPV 31
T+++HV DVNDN PV
Sbjct: 580 TLILHVLDVNDNGPV 594
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++ + SD+ V I V DVNDN P F Y +I E
Sbjct: 79 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 121
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++ + SD+ V I V DVNDN P F Y +I E
Sbjct: 78 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++ + SD+ V I V DVNDN P F Y +I E
Sbjct: 79 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 121
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 55 QYELTLVASDSLNEN---KTTVVIHINDVNDMPPVFNTSLYPAIMEE 98
+Y LT+ A+D + +I I D ND P+F+ Y A++ E
Sbjct: 192 EYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 18 VVIHVKDVNDNPPVFERPTYRTQITE 43
+I + D NDN P+F+ TY + E
Sbjct: 213 AIIQITDANDNAPIFDPKTYTALVPE 238
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 17 TVVIHVKDVNDNPPV 31
T+++HV DVNDN PV
Sbjct: 431 TLILHVLDVNDNGPV 445
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 19 VIHVKDVNDNPPVFERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHIN 78
++ V+D+NDNPP F Y + E + + V+Q + ASD+ + +
Sbjct: 94 IVKVQDINDNPPEFLHEIYHANVPERSN--VGTSVIQ----VTASDADDPTYGNSAKLVY 147
Query: 79 DVNDMPPVFNTSLYPAIMEEELP 101
+ + P F+ I+ LP
Sbjct: 148 SILEGQPYFSVEAQTGIIRTALP 170
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 19 VIHVKDVNDNPPVFERPTYRTQITEEDD 46
+I + D+NDN P+F + Y + E D
Sbjct: 93 IIKIHDINDNEPIFTKDVYTATVPEMAD 120
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 74 VIHINDVNDMPPVFNTSLYPAIMEE 98
+I I+D+ND P+F +Y A + E
Sbjct: 93 IIKIHDINDNEPIFTKDVYTATVPE 117
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKL 111
I+IN+ N MP S+YP + E + YP + KL
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKL 337
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKL 111
I+IN+ N MP S+YP + E + YP + KL
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKL 337
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKL 111
I+IN+ N MP S+YP + E + YP + KL
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKL 337
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 18 VVIHVKDVNDNPPVF 32
V+I VKDVND PP F
Sbjct: 92 VIILVKDVNDEPPYF 106
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 19 VIHVKDVNDNPPVFERPTYRTQITE 43
+I V D+NDN P+F + + + E
Sbjct: 91 IIKVSDINDNAPIFVQKIFNGSVPE 115
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 15 YTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y V I V+D NDN P F+ +Y + E
Sbjct: 110 YHEVRIVVRDRNDNSPTFKHESYYATVNE 138
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++ + SD+ V I V VNDN P F Y +I E
Sbjct: 79 FTVEFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPE 121
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 23 KDVNDNPPVFERPTYRTQITEED 45
K++ ++ P+FERPT ED
Sbjct: 204 KELEESSPIFERPTGEVSTKNED 226
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITEEDDRTLPKRVLQYE 57
+ L+ A D N EN +VI+V D+NDN P F + + E + Y
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG------SKPGTYV 127
Query: 58 LTLVASDSLNENKTTVVIHINDVNDMP 84
+T+ A D+ + N ++ V+ P
Sbjct: 128 MTVTAIDADDPNALNGMLRYRIVSQAP 154
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++++ N E+ ++I V D NDN P F + ++ + E
Sbjct: 77 FSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVME 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,364,600
Number of Sequences: 62578
Number of extensions: 117766
Number of successful extensions: 352
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 84
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)