RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy585
(111 letters)
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 38.1 bits (89), Expect = 5e-05
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDNPP 30
Y L + A+D + TV I V DVNDN P
Sbjct: 49 YTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
Score = 35.4 bits (82), Expect = 6e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 55 QYELTLVASDSLNENK---TTVVIHINDVNDMPP 85
+Y LT+ A+D TV I + DVND P
Sbjct: 48 EYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain.
Cadherins are glycoproteins involved in Ca2+-mediated
cell-cell adhesion. The cadherin repeat domains occur
as tandem repeats in the extracellular regions, which
are thought to mediate cell-cell contact when bound to
calcium. They play numerous roles in cell fate,
signalling, proliferation, differentiation, and
migration; members include E-, N-, P-, T-, VE-, CNR-,
proto-, and FAT-family cadherin, desmocollin, and
desmoglein, a large variety of domain architectures
with varying repeat copy numbers. Cadherin-repeat
containing proteins exist as monomers, homodimers, or
heterodimers.
Length = 98
Score = 31.5 bits (72), Expect = 0.021
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDN 28
Y L + A+D + TV I V DVNDN
Sbjct: 68 YTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 31.1 bits (71), Expect = 0.033
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVND 82
Y LT+ A+D + TV I + DVND
Sbjct: 67 SYTLTVTATDGGGPPLSSTATVTITVLDVND 97
>gnl|CDD|224853 COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate
tautomerase homolog [General function prediction only].
Length = 69
Score = 29.9 bits (68), Expect = 0.070
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 35 PTYRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVND 82
P ++ E K L E+T V ++L ++ + + + I +V
Sbjct: 2 PFVNIKLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPP 49
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This
family represents the C-terminal, catalytic domain of
the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
D-Alanine is one of the central molecules of the
cross-linking step of peptidoglycan assembly. There are
three enzymes involved in the D-alanine branch of
peptidoglycan biosynthesis: the pyridoxal
phosphate-dependent D-alanine racemase (Alr), the
ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Length = 201
Score = 27.6 bits (62), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEE 98
I++N+VN MP + SLYP +
Sbjct: 164 IYLNEVNTMPGFTSISLYPRMWAA 187
>gnl|CDD|215459 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 26.1 bits (57), Expect = 5.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 37 YRTQITEEDDRTLPKRVLQYELTLVASDSLNENKTTV 73
Y EDD+ L EL VA D+L N TT+
Sbjct: 337 YNCVYQREDDKGTIGVSLARELMAVAGDALKTNITTL 373
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as
1-13). Class 13 represents proteins that at the time
were difficult to place in a distinct similarity group;
this subgroup represents either a new class or one that
was included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 255
Score = 25.6 bits (57), Expect = 6.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 68 ENKTTVVIHINDVNDMPPVFNTSLY 92
E TVV + + V+NT +
Sbjct: 72 ELGITVVAGMFEPAGDGRVYNTLVV 96
>gnl|CDD|225222 COG2345, COG2345, Predicted transcriptional regulator
[Transcription].
Length = 218
Score = 25.4 bits (56), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 34 RPTYRTQITEEDDRTLPKRVLQYELTLVASDSLNEN 69
RP ++TE+ PKR EL L D+L E
Sbjct: 66 RPAKLYRLTEKGREQFPKRYG--ELALALLDALEET 99
>gnl|CDD|129314 TIGR00210, gltS, sodium--glutamate symport carrier (gltS).
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 398
Score = 25.5 bits (56), Expect = 8.2
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 23 KDVNDNPPVFERPTYRTQITE 43
D D FERP QIT
Sbjct: 194 NDTKDVTIGFERPQDNRQITY 214
>gnl|CDD|148673 pfam07209, DUF1415, Protein of unknown function (DUF1415). This
family consists of several hypothetical bacterial
proteins of around 180 residues in length. The function
of this family is unknown.
Length = 174
Score = 25.2 bits (56), Expect = 8.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 30 PVFERPTYRTQITEEDDRTLPKRVLQY---ELTLVASDSLNENKTTVVIH 76
+ R ++E D + +L+ EL L+ D E +TT++I
Sbjct: 27 REVVKGQIRYVVSEATD---VEDLLEDLLAELQLLDQDDAEEIETTLLIL 73
>gnl|CDD|177808 PLN00415, PLN00415, 3-ketoacyl-CoA synthase.
Length = 466
Score = 25.0 bits (54), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 43 EEDDRTLPKRVLQYELTLVASDSLNENKTTV 73
+ED + + L ELT+VA D+L N T +
Sbjct: 289 KEDSKGIVGVALSKELTVVAGDTLKTNLTAL 319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,585,535
Number of extensions: 459393
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 21
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)