RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy585
(111 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 64.2 bits (157), Expect = 9e-14
Identities = 35/161 (21%), Positives = 50/161 (31%), Gaps = 59/161 (36%)
Query: 1 YELKLAASD----NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE------------- 43
Y L A D E + +I V+D+NDN P F Y + E
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTA 130
Query: 44 --EDD-----------------------------RTLPK-----RVLQYELTLVASDSLN 67
DD +T +Y + + A D
Sbjct: 131 TDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGG 190
Query: 68 E-----NKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
TT+ + + DVND PP F SLY + E+ + G
Sbjct: 191 HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLG 231
Score = 39.2 bits (92), Expect = 8e-05
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 55 QYELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
+Y LT A D E + +I + D+ND P F Y A + E + G
Sbjct: 70 EYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 62.4 bits (152), Expect = 6e-13
Identities = 35/165 (21%), Positives = 49/165 (29%), Gaps = 63/165 (38%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE-------------- 43
+ L+ A D N EN +VI+V D+NDN P F + + E
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 44 -EDDRTLPKRVLQY---------------------------------------ELTLVAS 63
DD +L+Y L + A+
Sbjct: 134 DADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Query: 64 DSLNE------NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPG 102
D N T VI + DVND PP F + + E
Sbjct: 194 DMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVD 238
Score = 51.2 bits (123), Expect = 5e-09
Identities = 36/169 (21%), Positives = 53/169 (31%), Gaps = 70/169 (41%)
Query: 1 YELKLAASDNLKE------NYTTVVIHVKDVNDNPPVFERPTYRTQITEED--------- 45
Y L + A+D N T VI V DVNDNPP F T+ ++ E+
Sbjct: 186 YTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV-PENRVDVIVANL 244
Query: 46 ---DRTLP-----------------------------------KRVLQYE------LTLV 61
D+ P + + +E LT+
Sbjct: 245 TVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVA 304
Query: 62 ASDSLNENK---------TTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
A + + K TV + + DVN+ P F + EE L
Sbjct: 305 AENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLH 352
Score = 48.5 bits (116), Expect = 4e-08
Identities = 29/165 (17%), Positives = 46/165 (27%), Gaps = 64/165 (38%)
Query: 1 YELKLAASDNLKE---------NYTTVVIHVKDVNDNPPVFERPTYRTQITE-------- 43
+ L +AA + + + TV + V DVN+N P F + E
Sbjct: 299 FVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTML 357
Query: 44 -------ED----------------------------------DR-TLPKRVLQYELTLV 61
D DR + + Y T +
Sbjct: 358 TTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFL 417
Query: 62 ASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELPGP 103
ASD+ + T+ I++ D+ND P E P
Sbjct: 418 ASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ-EAETCETPEPNS 461
Score = 44.6 bits (106), Expect = 9e-07
Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 53/147 (36%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDNPPVFERPTYR---------TQITEEDD-- 46
Y ASDN T+ I++ D+NDN P IT D
Sbjct: 412 YNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINITALDYDI 471
Query: 47 ----------------------------------RTLPKRVLQ--YELTLVASDSLN--- 67
K + YE+ ++ +DS N
Sbjct: 472 DPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPK 531
Query: 68 ENKTTVVIHINDVNDMPPVFNTSLYPA 94
N + + + + + + +
Sbjct: 532 SNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 36.9 bits (86), Expect = 5e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPAIMEE 98
++ L A D EN +VI++ D+ND P F ++ + E
Sbjct: 73 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 62.2 bits (151), Expect = 8e-13
Identities = 35/163 (21%), Positives = 50/163 (30%), Gaps = 61/163 (37%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE-------------- 43
Y L A + E + I+V D NDN P F + +R + E
Sbjct: 229 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSAT 288
Query: 44 -EDDR----------------------------------TLPKRVLQYE------LTLVA 62
EDD +L L E LT+ A
Sbjct: 289 DEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQA 348
Query: 63 SDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPG 102
+D + +I I D ND P+F+ Y A++ E G
Sbjct: 349 TDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG 391
Score = 56.4 bits (136), Expect = 8e-11
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 60/160 (37%)
Query: 1 YELKLAASDN------LKENYTTVVIHVKDVNDNPPVFERPTYRTQITE----------- 43
Y L++ + L + TV + V+DVN+ P F R ++E
Sbjct: 451 YVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISL 509
Query: 44 ------------------ED--------------------DR-TLPKRVLQYELTLVASD 64
D DR + + Y + ++ +D
Sbjct: 510 VAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD 569
Query: 65 SLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
T T+++H+ DVND PV + ++ + P
Sbjct: 570 DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 609
Score = 54.9 bits (132), Expect = 3e-10
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 63/162 (38%)
Query: 1 YELKLAASDNLKE---NYTTVVIHVKDVNDNPPVFERPTYRTQITEED------------ 45
Y L + A+D +I + D NDN P+F+ TY + E+
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALV-PENEIGFEVQRLSVT 400
Query: 46 DRTLP----------------------------------KRVLQYE------LTLVASDS 65
D +P + L +E L + ++
Sbjct: 401 DLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA 460
Query: 66 LNENK------TTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
+ TV + + DVN+ P F ++ + E+L
Sbjct: 461 EPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLS 501
Score = 44.9 bits (106), Expect = 8e-07
Identities = 17/159 (10%), Positives = 36/159 (22%), Gaps = 63/159 (39%)
Query: 16 TTVVIHVKDVNDNPPVFERPTYRTQITEED-------------DRTLPKRVL-------- 54
V DV+ P F Y + + D T K L
Sbjct: 21 QVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSRF 80
Query: 55 --------------------QYELTLVASDSLNENKTTVV-----------------IHI 77
++ ++ + + + V + +
Sbjct: 81 RVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPV 140
Query: 78 NDVNDMPPVFNTS-----LYPAIMEEELPGPYPHSLLKL 111
+ + P + E GP+P L+++
Sbjct: 141 LTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI 179
Score = 44.5 bits (105), Expect = 1e-06
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 47/145 (32%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDNPPVFERPTYRT------------------ 39
Y + + +D+ + T+++HV DVNDN PV +
Sbjct: 561 YTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIP 620
Query: 40 --------QITEEDDRTL-----------------PKRVLQYELTLVASDSLN-ENKTTV 73
++ D T + Y + ++ SD+ N T V
Sbjct: 621 PNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVV 680
Query: 74 VIHINDVNDMPPVFNTSLYPAIMEE 98
+ L
Sbjct: 681 NATVCSCEGKAIKCQEKLVGGFDLP 705
Score = 43.3 bits (102), Expect = 3e-06
Identities = 19/159 (11%), Positives = 40/159 (25%), Gaps = 61/159 (38%)
Query: 1 YELKLAASDNLKEN---YTTVVIHVKDVNDNPPVFERPTYR-----TQITEEDDRTLPKR 52
+ +A+ + + + V + +R +++E + PKR
Sbjct: 116 TNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKR 175
Query: 53 VLQ--------------------------------------------------YELTLVA 62
++Q Y L+ A
Sbjct: 176 LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 235
Query: 63 SDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPAIMEE 98
E + I++ D ND P F ++ + E
Sbjct: 236 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE 274
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 56.5 bits (137), Expect = 3e-11
Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 58/143 (40%)
Query: 1 YELKLAASDN----LKENYTTVVIHVKDVNDNPPVFERPTYRTQITE------------- 43
Y L A D E + ++ V+D+NDNPP F Y + E
Sbjct: 72 YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTA 131
Query: 44 --EDDR----------------------------TLPKRVL------QYELTLVASDSLN 67
DD + +Y + + A D
Sbjct: 132 SDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGG 191
Query: 68 E-----NKTTVVIHINDVNDMPP 85
T V I + D
Sbjct: 192 HMGGLSGTTKVTITLTDDYKDDD 214
Score = 41.5 bits (98), Expect = 9e-06
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 55 QYELTLVASDS----LNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
QY L A D E + ++ + D+ND PP F +Y A + E G
Sbjct: 71 QYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG 123
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 56.9 bits (138), Expect = 4e-11
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 61/161 (37%)
Query: 1 YELKLAASDNLKE---NYTTVVIHVKDVNDNPPVFERPTYRTQITE-------------- 43
Y L + A+D +I + D NDN P+F+ TY + E
Sbjct: 193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTD 252
Query: 44 ---------------EDDRTLP----------------KRVLQYE------LTLVASDSL 66
+ + L +E L + ++
Sbjct: 253 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAE 312
Query: 67 NENK------TTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
+ TV + + DVN+ P F ++ + E+L
Sbjct: 313 PFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLS 352
Score = 53.1 bits (128), Expect = 1e-09
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 60/160 (37%)
Query: 1 YELKLAASDN------LKENYTTVVIHVKDVNDNPPVFERPTYRTQITE----------- 43
Y L++ + L + TV + V+DVN+ P F R ++E
Sbjct: 302 YVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISL 360
Query: 44 ------------------ED--------------------DR-TLPKRVLQYELTLVASD 64
D DR + + Y + ++ +D
Sbjct: 361 VAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD 420
Query: 65 SLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
T T+++H+ DVND PV + ++ + P
Sbjct: 421 DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP 460
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y L A + E + I+V D NDN P F + +R + E
Sbjct: 80 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE 125
Score = 45.8 bits (109), Expect = 3e-07
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 55 QYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPG 102
+Y LT+ A+D + +I I D ND P+F+ Y A++ E G
Sbjct: 192 EYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG 242
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
+Y L+ A E + I++ D ND P F ++ + E +
Sbjct: 79 KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQ 128
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 56.2 bits (136), Expect = 8e-11
Identities = 33/161 (20%), Positives = 49/161 (30%), Gaps = 61/161 (37%)
Query: 1 YELKLAASDNLKE---NYTTVVIHVKDVNDNPPVFERPTYRTQITE-------------- 43
Y L + A+D E VI VKD+NDN PVF TY+ Q+ E
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTD 246
Query: 44 --------------------------EDDRT-----LPKRVLQYE------LTLVASDSL 66
D T + L +E L + +
Sbjct: 247 DDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEE 306
Query: 67 NENK------TTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
TV + + DVN+ P+F + + E+
Sbjct: 307 PFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFG 346
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y L A E+ +VI V D NDN P F + + + E
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Score = 49.6 bits (119), Expect = 2e-08
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 48/140 (34%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDNPPVFERPTYR--------TQITEED---- 45
Y + A+D+ + T+++ + DVNDN P+ E + IT D
Sbjct: 407 YVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITILDPDLP 466
Query: 46 -----------------------DRTLPKRVL---------QYELTLVASDSLN-ENKTT 72
D +L +Y++ L +D+ N + TT
Sbjct: 467 PNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTT 526
Query: 73 VVIHINDVNDMPPVFNTSLY 92
+ +H+ D + +
Sbjct: 527 LDVHVCDCEGTVNNCMKAHH 546
Score = 45.8 bits (109), Expect = 3e-07
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 55 QYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPG 102
Y L + A+D E VI + D+ND PVFN S Y + E
Sbjct: 186 TYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVN 236
Score = 40.8 bits (96), Expect = 2e-05
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 1 YELKLAASDNLK-ENYTTVVIHVKDVNDNPPVFERPTYR 38
Y++ L +DN + TT+ +HV D + +
Sbjct: 509 YKIHLKLADNQNKDQVTTLDVHVCDCEGTVNNCMKAHHH 547
Score = 39.2 bits (92), Expect = 8e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
+Y L A S E+ +VI + D ND P F ++ + E
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Score = 36.2 bits (84), Expect = 9e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 55 QYELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELP 101
Y ++A+D + T T+++ + DVND P+ P
Sbjct: 406 TYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP 455
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 54.5 bits (132), Expect = 1e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ ++ + SD+ V I V DVNDN P F Y +I E
Sbjct: 78 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120
Score = 46.4 bits (111), Expect = 2e-07
Identities = 19/124 (15%), Positives = 30/124 (24%), Gaps = 47/124 (37%)
Query: 26 NDNPPVFERPTYRT-----------------------------QITEEDDR--------- 47
+ P F + T ++ E+
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDT 61
Query: 48 ---TLPK-----RVLQYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEE 98
L + ++ + SD V I + DVND P F+ Y I E
Sbjct: 62 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121
Query: 99 ELPG 102
G
Sbjct: 122 TPVG 125
Score = 28.7 bits (65), Expect = 0.28
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 55 QYELTLVASDSLNEN----KTTVVIHINDVNDM 83
Y+LT+ A+D + I I D+ DM
Sbjct: 177 AYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 28.3 bits (64), Expect = 0.37
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 1 YELKLAASDNLKEN----YTTVVIHVKDVNDN 28
Y+L + A+D K + I + D+ D
Sbjct: 178 YQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 54.6 bits (132), Expect = 3e-10
Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 60/161 (37%)
Query: 1 YELKLAASDN------LKENYTTVVIHVKDVNDNPPVFERPTYRTQITE----------- 43
Y L + A D + T P F P+Y +I E
Sbjct: 182 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISI 241
Query: 44 --ED-----------------------------------DRTLPKRVLQYELTLVASD-- 64
+ D ++ Y L + A++
Sbjct: 242 KAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS 301
Query: 65 -SLNENKTTVVIHINDVNDMPPVFNTSLYPA--IMEEELPG 102
+ + I + DVND P F Y A + E+ G
Sbjct: 302 GGFS-TSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLG 341
Score = 44.2 bits (105), Expect = 1e-06
Identities = 24/159 (15%), Positives = 37/159 (23%), Gaps = 57/159 (35%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDNPPVFERP--TYRTQ--------------- 40
+ + N + V+I VKDVND PP F +
Sbjct: 77 WVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ 136
Query: 41 -------------ITEEDDRTL----PK----RVLQ---------YELTLVASD-----S 65
I + + R Y L + A D
Sbjct: 137 ARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVD 196
Query: 66 LNENKTTVVIHIN-DVNDMPPVFN-TSLYPAIMEEELPG 102
++T ++ P F S I E +
Sbjct: 197 DRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 235
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 51.6 bits (124), Expect = 2e-09
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 1 YELKLAASDNL----KENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
YEL D E + +I V D+NDN P+F + + + E
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE 115
Score = 41.2 bits (97), Expect = 1e-05
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 55 QYELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
+YELT D N E + +I ++D+ND P+F ++ + E G
Sbjct: 68 EYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 51.2 bits (123), Expect = 3e-09
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y+L + +D E + + V D NDN P+F Y + E
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119
Score = 40.5 bits (95), Expect = 2e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
Y+L + +D+ E + + + D ND P+F Y +ME G
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTG 124
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 51.2 bits (123), Expect = 3e-09
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
+ L+ A D N EN +VI+V D+NDN P F + + E
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
Score = 39.7 bits (93), Expect = 5e-05
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
++ L A D EN +VI++ D+ND P F ++ + E PG
Sbjct: 73 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG 124
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 50.8 bits (122), Expect = 4e-09
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y L A E+ +VI V D NDN P F + + + E
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Score = 41.6 bits (98), Expect = 8e-06
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
+Y L A S E+ +VI + D ND P F ++ + E +PG
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG 124
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 50.8 bits (122), Expect = 4e-09
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1 YELKLAASDNL----KENYTTVVIHVKDVNDNPPVFERPTYRTQITE 43
Y L+ A + E + +I + D+NDN P+F + Y + E
Sbjct: 71 YILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPE 117
Score = 41.5 bits (98), Expect = 8e-06
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 55 QYELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPG 102
Y L A + E ++ +I I+D+ND P+F +Y A + E G
Sbjct: 70 VYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG 122
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 49.3 bits (118), Expect = 2e-08
Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 56/157 (35%)
Query: 1 YELKLAASDNL---KENYTTVVIHVKDVNDNPPVFERP--TYRTQITEE----------- 44
+ + N + V+I VKDVND PP F + +
Sbjct: 72 WVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ 131
Query: 45 -------------------------DDRT---LPKRVL------QYELTLVASDS----- 65
D+R+ + +Y L + A D
Sbjct: 132 ARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVD 191
Query: 66 LNENKTTVVIHIN-DVNDMPPVFNTSLYPAIMEEELP 101
++T ++ P F Y A + E
Sbjct: 192 DRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQK 228
Score = 45.5 bits (108), Expect = 5e-07
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 58/139 (41%)
Query: 1 YELKLAASDN-------LKENYTTVVIHVKDVNDNPPVFERPTYRTQITE---------- 43
Y L + A D ++ + + P F P+Y +I E
Sbjct: 177 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIIS 235
Query: 44 ---ED-----------------------------------DRTLPKRVLQYELTLVASDS 65
+ D ++ Y L + A++
Sbjct: 236 IKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED 295
Query: 66 LN--ENKTTVVIHINDVND 82
+ I + DVND
Sbjct: 296 SGGFSTSVDLTIRVTDVND 314
Score = 35.1 bits (81), Expect = 0.002
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 56 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYP---AIMEEELPG 102
+ + + + V+I + DVND PP F P + P
Sbjct: 72 WVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 124
Score = 30.0 bits (68), Expect = 0.12
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 1 YELKLAASDN---LKENYTTVVIHVKDVNDN 28
Y L + A+++ + + I V DVNDN
Sbjct: 286 YSLIVTATEDSGGFSTS-VDLTIRVTDVNDN 315
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 42.8 bits (102), Expect = 1e-06
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 20 IHVKDVNDNPPVFERPTYRTQITE 43
NDN PVF+ I E
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPE 25
Score = 28.2 bits (64), Expect = 0.29
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEEELP 101
+ ND PVF + E P
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAP 28
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 43.1 bits (102), Expect = 1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVFER 34
+ L A D N E + I V D+NDN PVF +
Sbjct: 86 FLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 36.5 bits (85), Expect = 3e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVF 87
+ LT A D+ E + I + D+ND PVF
Sbjct: 85 FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 42.6 bits (101), Expect = 1e-06
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPPVF 32
+ L+ A D N EN +VI+V D+NDN P F
Sbjct: 76 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 35.7 bits (83), Expect = 4e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHINDVNDMPPVF 87
++ L A D EN +VI++ D+ND P F
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 42.1 bits (100), Expect = 2e-06
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 22 VKDVNDNPPVFERPTYRTQITE 43
NDN P FE+ Y + E
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAE 25
Score = 35.1 bits (82), Expect = 8e-04
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 1 YELKLAASD---NLKENYTTVVIHVKDVNDNPP 30
+ A D K + TVV+++KD NDN P
Sbjct: 87 LRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 28.2 bits (64), Expect = 0.26
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 77 INDVNDMPPVFNTSLYPAIMEEELP 101
+ ND P F S+Y A + E
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSA 28
Score = 28.2 bits (64), Expect = 0.28
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 56 YELTLVASDSLN---ENKTTVVIHINDVNDMPP 85
T++A D +K TVV++I D ND P
Sbjct: 87 LRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 39.9 bits (93), Expect = 4e-05
Identities = 16/132 (12%), Positives = 27/132 (20%), Gaps = 60/132 (45%)
Query: 16 TTVVIHVKDVNDNPPV----------FERPTYRTQITE---------------------- 43
++ N + P F +I E
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQI 172
Query: 44 ------EDDRTLP------------KRVL------QYELTLVASD----SLNENKTTVVI 75
+ LP + L +YEL V + +
Sbjct: 173 SVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPV 232
Query: 76 HINDVNDMPPVF 87
+ D +D P F
Sbjct: 233 TVYDEDDSAPEF 244
Score = 39.5 bits (92), Expect = 6e-05
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 1 YELKLAASD----NLKENYTTVVIHVKDVNDNPPVFE 33
YEL + + + V D +D+ P FE
Sbjct: 209 YELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 24.9 bits (54), Expect = 7.6
Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 43 EEDDRTLPKRVLQYELTLVASDSLN---------ENKTTVVIHINDVNDMPPVFN 88
++ + LT+ L+ + ++ + N P +
Sbjct: 76 SSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACS 130
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 31.8 bits (73), Expect = 0.017
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 VVIHVKDVNDNPPVF 32
I ++DVND+ P F
Sbjct: 101 GEIQLQDVNDHAPEF 115
Score = 25.7 bits (57), Expect = 2.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 73 VVIHINDVNDMPPVF 87
I + DVND P F
Sbjct: 101 GEIQLQDVNDHAPEF 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.025
Identities = 6/69 (8%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 8 SDNLKENYTTVVIHVKDVNDNPPVFERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLN 67
++ + + + + + + + D + ++ +Y +LV
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKSDVMVVVNKLHKY--SLVEKQP-- 421
Query: 68 ENKTTVVIH 76
++T+ I
Sbjct: 422 -KESTISIP 429
Score = 26.0 bits (56), Expect = 3.3
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 36 TYRTQITEEDD------RTLPKRVLQYELTLVASDSLNENKTTVVIHINDVNDMPPVFNT 89
Y+ I + D + + + E L+ S + ++ I + + +F
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD------LLRIALMAEDEAIFEE 582
Query: 90 S 90
+
Sbjct: 583 A 583
Score = 25.6 bits (55), Expect = 4.5
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 30/126 (23%)
Query: 2 ELKLAASDNLKENYTTVVIH----------VKDVNDNPPVFERPTYR------TQITEED 45
+L+ A L+ V+I DV + V + ++ +
Sbjct: 139 KLRQALL-ELRPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 46 DRTLPKRVLQYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYP 105
+ L Y++ + S +++ + + + I+ + ++ + PY
Sbjct: 197 TVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRL--------LKSK---PYE 244
Query: 106 HSLLKL 111
+ LL L
Sbjct: 245 NCLLVL 250
Score = 24.8 bits (53), Expect = 8.7
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 17/75 (22%)
Query: 4 KLAASDNLKENYTTVVIHVKDV--NDNPPVFERPTYRTQITEEDDRTLPKRVLQYELTLV 61
+ T + I +D NDN + R Q P L+ L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---------PYLKLRQALL-- 145
Query: 62 ASDSLNENKTTVVIH 76
L K V+I
Sbjct: 146 ---ELRPAK-NVLID 156
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 26.6 bits (59), Expect = 1.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 85 PVFNTSLYPAIMEEELPGPYPHSLLKL 111
P+ + + P E GP+P +L+++
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQI 28
Score = 26.2 bits (58), Expect = 1.6
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 30 PVFERPTYRTQITEEDDRTLPKRVLQ 55
P+ E + PK ++Q
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQ 27
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase,
catalytic proline, hexamer, BE beta, isomerase; 1.90A
{Helicobacter pylori} PDB: 2orm_A
Length = 67
Score = 25.9 bits (57), Expect = 1.3
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 35 PTYRTQITEEDDRTLP--KRVLQYELTLVASDSLNENKTTVVIHINDVND 82
P ++ E+ K+ L ++ + LN+NK ++V+ I++V+
Sbjct: 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDS 50
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus
thermophilus}
Length = 64
Score = 24.9 bits (55), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
KR L LT +AS L E V + + +V
Sbjct: 17 KRELVRRLTEMASRLLGEPYEEVRVILYEV 46
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus
aureus}
Length = 63
Score = 25.0 bits (55), Expect = 2.5
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
+ L E+T + N+ + + I ++
Sbjct: 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEEM 48
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, hydrolase; 2.41A {Chloroflexus
aurantiacus}
Length = 72
Score = 24.7 bits (54), Expect = 3.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
K L L+ A+ + + V + I +V
Sbjct: 17 KAELARALSAAAAAAFDVPLAEVRLIIQEV 46
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate
tautomerase, inhibitor, 2-FLUO hydroxycinnamate,
isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB:
2op8_A*
Length = 61
Score = 24.6 bits (54), Expect = 3.1
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
KR L ++T ++ ++ +V+ I ++
Sbjct: 16 KRNLVEKVTEAVKETTGASEEKIVVFIEEM 45
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP}
SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Length = 62
Score = 24.6 bits (54), Expect = 3.3
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
K L +++ ++SL+ V + I ++
Sbjct: 16 KETLIRQVSEAMANSLDAPLERVRVLITEM 45
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas
pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Length = 76
Score = 24.7 bits (54), Expect = 3.3
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
KR L L V S++ E + + I +
Sbjct: 17 KRALSAGLLRVISEATGEPRENIFFVIREG 46
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family,
isomerase; 1.40A {Streptomyces achromogenes}
Length = 65
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDV 80
L LT A ++L V + + +
Sbjct: 16 VAALGEALTAAAHETLGTPVEAVRVIVEET 45
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA,
national project protein structural and functional
analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Length = 141
Score = 24.8 bits (54), Expect = 5.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 80 VNDMPPVFNTSLYPAIMEE 98
+ + PV+ T ME
Sbjct: 27 LGPVHPVYATYWMVKHMEL 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 6.4
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 45 DDRTLPKRVLQYELTLVASDS 65
+ + L K LQ L L A DS
Sbjct: 18 EKQALKK--LQASLKLYADDS 36
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle,
beta-alpha-beta, catalytic proline, isomerase; 2.37A
{Archaeoglobus fulgidus}
Length = 62
Score = 23.2 bits (50), Expect = 9.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 51 KRVLQYELTLVASDSLNENKTTVVIHINDVND 82
KR LT VA++ +++ + I I++
Sbjct: 15 KREFVERLTSVAAEIYGMDRSAITILIHEPPA 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,632,377
Number of extensions: 81983
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 119
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)