RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy585
(111 letters)
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 31.6 bits (70), Expect = 0.007
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 26 NDNPPVFERPTYRTQITE 43
NDN P F + +R + E
Sbjct: 2 NDNRPKFTQDVFRGSVRE 19
Score = 23.9 bits (50), Expect = 4.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 81 NDMPPVFNTSLYPAIMEEELP 101
ND P F ++ + E +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQ 22
Score = 23.5 bits (49), Expect = 5.2
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 55 QYELTLVASDSLN---ENKTTVVIHIND 79
+Y LT+ A+D + +I I D
Sbjct: 86 EYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 31.6 bits (70), Expect = 0.007
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 26 NDNPPVFERPTYRTQITE 43
NDN P F + + + E
Sbjct: 1 NDNRPEFTQEVFEGSVAE 18
Score = 23.9 bits (50), Expect = 4.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 81 NDMPPVFNTSLYPAIMEEELP 101
ND P F ++ + E
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAV 21
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 31.1 bits (69), Expect = 0.010
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 26 NDNPPVFERPTYRTQITE 43
NDN P+F+ TY + E
Sbjct: 2 NDNAPIFDPKTYTALVPE 19
Score = 25.0 bits (53), Expect = 1.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 81 NDMPPVFNTSLYPAIMEEELPG 102
ND P+F+ Y A++ E G
Sbjct: 2 NDNAPIFDPKTYTALVPENEIG 23
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.2 bits (69), Expect = 0.011
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 26 NDNPPVFERPTYRTQITE 43
NDN P F + + E
Sbjct: 1 NDNRPEFLHQVWNGSVPE 18
Score = 25.1 bits (53), Expect = 1.7
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 15 YTTVVIHVKDVNDNPPVFERPTYRTQITEEDDRTLPKRVLQYELTLVASDS------LNE 68
++ +P +F I ++V QY L + A+D
Sbjct: 44 LRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 103
Query: 69 NKTTVVIHIND 79
N T VI + D
Sbjct: 104 NTATAVITVTD 114
Score = 22.8 bits (47), Expect = 9.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 81 NDMPPVFNTSLYPAIMEEELP 101
ND P F ++ + E
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSK 21
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 30.3 bits (67), Expect = 0.022
Identities = 11/114 (9%), Positives = 22/114 (19%), Gaps = 42/114 (36%)
Query: 24 DVNDNPPVFERPTYRTQITEEDD------------------------------------- 46
++ F Y + ++
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTV 64
Query: 47 ---RTLPKRVLQYELTLVASDSLNENK--TTVVIHINDVNDMPPVFNTSLYPAI 95
R+ P Q + + A D + K V + P+ I
Sbjct: 65 YAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEI 118
Score = 26.1 bits (56), Expect = 0.71
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 1 YELKLAASDNLKENYTTVVIHVKDVNDNPPVFERPTYR 38
+ + + ++ V + + P+ E
Sbjct: 79 FLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIE 116
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 27.3 bits (59), Expect = 0.23
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 27 DNPPVFERPTYRTQITE 43
+ P F R ++E
Sbjct: 1 NEAPFFVPAVSRVDVSE 17
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 27.0 bits (58), Expect = 0.36
Identities = 3/26 (11%), Positives = 4/26 (15%)
Query: 6 AASDNLKENYTTVVIHVKDVNDNPPV 31
+ T V V
Sbjct: 80 LSDAQNNPQLTVVNATVCSCEGKAIK 105
Score = 25.4 bits (54), Expect = 1.1
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 10 NLKENYTTVVIHVKDVNDNPPVFERPTYRTQITEEDDRTLPKRVLQYELTLVASDSLN-E 68
+ T V + + ++ + T + Y + ++ SD+ N
Sbjct: 28 DADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP 87
Query: 69 NKTTVVIHINDVNDMPPV 86
T V +
Sbjct: 88 QLTVVNATVCSCEGKAIK 105
Score = 25.4 bits (54), Expect = 1.3
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 26 NDNPPVFERPTYRTQITE 43
NDN PV +
Sbjct: 1 NDNGPVPSPRVFTMCDQN 18
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.6 bits (57), Expect = 0.62
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 75 IHINDVNDMPPVFNTSLYPAIME 97
++ + N P + + SL P
Sbjct: 170 FYLLEANTSPGMTSHSLVPMAAR 192
>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
OXA-1 [TaxId: 562]}
Length = 251
Score = 26.3 bits (57), Expect = 0.88
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 56 YELTLVASDSLNENKTTVVIHINDVNDMPPVFN 88
+++ VAS + +++ N FN
Sbjct: 2 TDISTVASPLFEGTEGCFLLYDASTNAEIAQFN 34
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 25.4 bits (54), Expect = 1.5
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 75 IHINDVNDMPPVFNTSLYPAIMEE 98
++ + N +P N SL+ + +
Sbjct: 178 PYLGEPNTLPGFTNMSLFKRLWDY 201
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 25.1 bits (53), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 75 IHINDVNDMPPVFNTSLYPAIME 97
I +N+VN +P + S YP +M
Sbjct: 170 IVLNEVNTLPGFTSYSRYPRMMA 192
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.1 bits (50), Expect = 3.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 38 RTQITEEDDRTLPKRVLQYE 57
R T+ DD + V +
Sbjct: 2 RIAFTDADDVAILTYVKENA 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,406
Number of extensions: 15421
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 30
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)