BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5853
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A
pdb|2EFC|C Chain C, Ara7-GdpATVPS9A
pdb|2EFD|A Chain A, Ara7ATVPS9A
pdb|2EFD|C Chain C, Ara7ATVPS9A
pdb|2EFE|A Chain A, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|C Chain C, Ara7-Gdpnh2ATVPS9A
pdb|4G01|A Chain A, Ara7-gdp-ca2+/vps9a
Length = 267
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+S + +L A +++ V+++ + N + I+ D+ L + + + + I+P +
Sbjct: 69 WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIA-DEKLFQKMSLVQQFISPEN-- 125
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XXXXXXXXXXXXXAVPA 157
L I F +E W AQ E+ I+ YK DK+ C+ P
Sbjct: 126 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 185
Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
AD+ +PVL+YV IKANPP L S + Y+ + +K+ GE Y++ SA FI +D K
Sbjct: 186 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 245
>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|C Chain C, Ara7-GdpATVPS9A(D185N)
Length = 267
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+S + +L A +++ V+++ + N + ++ D+ L + + + + I+P +
Sbjct: 69 WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPEN-- 125
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XXXXXXXXXXXXXAVPA 157
L I F +E W AQ E+ I+ YK DK+ C+ P
Sbjct: 126 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 185
Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
A++ +PVL+YV IKANPP L S + Y+ + +K+ GE Y++ SA FI +D K
Sbjct: 186 ANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 245
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 88 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 142
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 143 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 202
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 203 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 247
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ + +R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 90 IEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QXLCVP--VNEDIPEVS 144
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 145 DXVVKAITDIIEXDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 204
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + GE Y++ C A+ FI+ +D
Sbjct: 205 GNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLD 249
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 63 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 95
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 64 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 96
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 182 QYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+ V FY ++ EG IQY ++++CS E ++
Sbjct: 65 ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97
>pdb|1D8W|A Chain A, L-Rhamnose Isomerase
pdb|1D8W|B Chain B, L-Rhamnose Isomerase
pdb|1D8W|C Chain C, L-Rhamnose Isomerase
pdb|1D8W|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 65 RCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYL 103
R ++A+Y D +SRDQ+ EH KN + N L
Sbjct: 98 RLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGL 136
>pdb|1DE5|A Chain A, L-Rhamnose Isomerase
pdb|1DE5|B Chain B, L-Rhamnose Isomerase
pdb|1DE5|C Chain C, L-Rhamnose Isomerase
pdb|1DE5|D Chain D, L-Rhamnose Isomerase
pdb|1DE6|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|B Chain B, L-Rhamnose Isomerase
pdb|1DE6|C Chain C, L-Rhamnose Isomerase
pdb|1DE6|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 65 RCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYL 103
R ++A+Y D +SRDQ+ EH KN + N L
Sbjct: 98 RLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGL 136
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 67 YMYAMYPNGDGDISRDQVLHEHVKNLAKIIT 97
+M+ + DGD+SRD +L E +K +IIT
Sbjct: 226 HMHTLMVEVDGDVSRDDIL-EAIKKTPRIIT 255
>pdb|4ACO|A Chain A, Structure Of The Budding Yeast Ndc10 N-Terminal Domain
Length = 956
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 23 EYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGD 76
EY+R YE + N RD+ L L ++ +R + + ++Y +PN D
Sbjct: 441 EYKRHDYEGLSQNSRDF-----------LDLMEVLRERFLSNLPWIYKFFPNHD 483
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,184,531
Number of Sequences: 62578
Number of extensions: 219230
Number of successful extensions: 377
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 31
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)