BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5853
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus
musculus GN=Gapvd1 PE=1 SV=2
Length = 1458
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1282 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1341
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +TI+NLLSL + +VP ADD
Sbjct: 1342 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1401
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D ++
Sbjct: 1402 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1458
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos
taurus GN=GAPVD1 PE=2 SV=1
Length = 1413
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1237 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1296
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +TI+NLLSL + +VP ADD
Sbjct: 1297 LQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1356
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D ++
Sbjct: 1357 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1413
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1
OS=Homo sapiens GN=GAPVD1 PE=1 SV=2
Length = 1478
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1302 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1361
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +TI+NLLSL + +VP ADD
Sbjct: 1362 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1421
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D ++
Sbjct: 1422 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1478
>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1
OS=Xenopus laevis GN=gapvd1 PE=2 SV=1
Length = 1452
Score = 219 bits (559), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 98/177 (55%), Positives = 139/177 (78%), Gaps = 2/177 (1%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A+IAI+R++++R + A PN D DI RDQVLHEH+K L+K++T NH+
Sbjct: 1276 WQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRA 1335
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
L+IP+++ E PWP+AQ EI +IS+YKT DKVQC+ R +TI+NLLSL + +VP ADD
Sbjct: 1336 LQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEYSVPGADD 1395
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
+PVLV+VLIKANP LLSTVQY++SFY+N++ GE YWW+QF +A+EFIKT+D ++
Sbjct: 1396 FVPVLVFVLIKANPTYLLSTVQYISSFYSNRLIGEESYWWMQFTAAVEFIKTIDDRK 1452
>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
melanogaster GN=CG1657 PE=1 SV=2
Length = 1712
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 128/189 (67%), Gaps = 1/189 (0%)
Query: 28 TYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHE 87
T EFV++ ++ RS + Q+ A++AI+R ++ + Y M+PN D D+SRD+VL
Sbjct: 1522 TEEFVESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSA 1581
Query: 88 HVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILN 147
H+ L + + P H L I + + E PW AQ ++ +++YKT +K+QC+ +++I++
Sbjct: 1582 HIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMS 1641
Query: 148 LLSLTSA-VPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSA 206
LL ++S VPAADDL+PVL+YV+I ANPP LLSTV+Y++ F K+EGE +++W F S
Sbjct: 1642 LLRMSSGRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGKKLEGEDEFYWTLFGSV 1701
Query: 207 IEFIKTMDY 215
++FIKTMDY
Sbjct: 1702 VKFIKTMDY 1710
>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2
Length = 1774
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Query: 50 QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
Q+ A+ AI+R ++ Y M+PN D D+SRD VL H+ L + + P H L I + +
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEY 1665
Query: 110 HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSA-VPAADDLIPVLVYV 168
E PW AQ ++ +++YKT +K+QC+ +++I++LL ++ VPAADDL+PVL+YV
Sbjct: 1666 LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRVPAADDLLPVLIYV 1725
Query: 169 LIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDY 215
+I ANPP LLSTV+Y++ F K++GE +++W F S ++FIKTMDY
Sbjct: 1726 VIMANPPYLLSTVEYISCFLGRKLDGENEFYWTLFGSVVKFIKTMDY 1772
>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans
GN=rme-6 PE=1 SV=2
Length = 1093
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 51 LSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFH 110
+S A I+R VI Y A YPN D D RD++L + ++ ++TP + +L+IP+ H
Sbjct: 927 MSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDFLKIPEHLH 986
Query: 111 SECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYV 168
E PWP+AQAE+S + Y TA DK+ CV R + I NL++L+S AV +ADDL PVLV+V
Sbjct: 987 GEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDVINNLVALSSKNAVASADDLTPVLVFV 1046
Query: 169 LIKANPPSLLSTVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTM 213
+IKANP +LLS VQ+V +F +++E G Y+WV F SA+E+IKT+
Sbjct: 1047 IIKANPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYIKTI 1092
>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
GN=rme-6 PE=3 SV=1
Length = 1104
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 109/163 (66%), Gaps = 3/163 (1%)
Query: 54 AKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSEC 113
A ++R V+ Y A +PN + D +D++L + + +TP H+ L+IP+ E
Sbjct: 941 AMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEA 1000
Query: 114 PWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYVLIK 171
PWP+AQAE+S + +Y TA +K+ C+ R + I NL++L+S AV +ADDL PVLV+V+IK
Sbjct: 1001 PWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIK 1060
Query: 172 ANPPSLLSTVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTM 213
ANP SLLS +Q++ +F +++E G Y+WV F SA+E+IKT+
Sbjct: 1061 ANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYIKTI 1103
>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis
thaliana GN=VPS9A PE=1 SV=1
Length = 520
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+S + +L A +++ V+++ + N + ++ D+ L + + + + I+P +
Sbjct: 67 WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPEN-- 123
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLL---SLTSA--VPA 157
L I F +E W AQ E+ I+ YK DK+ C+ I NLL S+ S P
Sbjct: 124 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 183
Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
AD+ +PVL+YV IKANPP L S + Y+ + +K+ GE Y++ SA FI +D K
Sbjct: 184 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 243
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1
Length = 491
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y + P D +D + + ++ L +TP + L +P + E P +
Sbjct: 211 IEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTP--QMLCVP--VNEEIPEVS 265
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ R I N + +T PA ADD +P L+Y+++K
Sbjct: 266 DMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 325
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 326 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 370
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1
Length = 492
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + L +P + E P +
Sbjct: 212 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTP--QMLCVP--VNEEIPEVS 266
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + I N + +T PA ADD +P L+Y+++K
Sbjct: 267 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 326
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 327 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 371
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2
Length = 708
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 428 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 482
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + I N + +T PA ADD +P L+Y+++K
Sbjct: 483 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 542
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 543 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 587
>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps901 PE=1 SV=3
Length = 572
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPN-----------GDGDISRDQVLHEHVKN 91
++ + ++ AK +++ V++R Y P D+ D+VL E ++
Sbjct: 172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231
Query: 92 LAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSL 151
I N L I K S + A E+ I+ Y DK+ C+ I + L
Sbjct: 232 FQWITEEN---LDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRN 288
Query: 152 TSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFI 210
+AD +P+L++V+++A P L+S +QY+ F + K+ GE+ Y+ A+ FI
Sbjct: 289 VVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFI 348
Query: 211 KTMD 214
+T+D
Sbjct: 349 ETLD 352
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1
SV=2
Length = 451
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 54 AKIAIDRAVI----SRCYMYAMY-----PNGD---GDISRDQVLHEHVKNLAKIITP--- 98
AK +++ ++ SRC+ ++Y P D D++ D L E +++ + I+P
Sbjct: 133 AKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHY-RFISPIML 191
Query: 99 ----NHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSA 154
R+ K H A E+ I+ +K+ DK+ CV I LL T
Sbjct: 192 DIPDTMPNARLNKFVH------LASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKL 245
Query: 155 VP-AADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFIKT 212
AD IPVL+Y ++K L+S V Y+ F + + + GE +Y+ +A+ FI
Sbjct: 246 EQNGADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFIMN 305
Query: 213 M 213
+
Sbjct: 306 L 306
>sp|Q8C190|VP9D1_MOUSE VPS9 domain-containing protein 1 OS=Mus musculus GN=Vps9d1 PE=2
SV=1
Length = 649
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 76 DGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKV 135
+ +SR L+ + A I P R+P+ S P+ A E+ + K+
Sbjct: 490 EAAVSRSMELYRNAPPTALGI-PTKLLPRVPEAQASTYPYCTAAQELGLLVLESCPQKKL 548
Query: 136 QCVYRTLNTIL----NLLSLTSAVP-----------AADDLIPVLVYVLIKANPPSLLST 180
+C+ RTL I + A P ADDL+P+L +V++++ P L+S
Sbjct: 549 ECIVRTLRVICICAEDYCRAQEARPEGESQPPAAAIGADDLLPILSFVVLRSGLPQLVSE 608
Query: 181 VQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTM 213
+ F + + GE Y SA+ +++ +
Sbjct: 609 CAALEEFTHEGYLIGEEGYCLTSLQSALSYVELL 642
>sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN=RIN3 PE=1 SV=4
Length = 985
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 121 EISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVP-AADDLIPVLVYVLIKANPPSLL 178
+ +S+ + K+ + +T I + ++L + P ADD +PVL+YVL ++N +L
Sbjct: 745 KFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEML 804
Query: 179 STVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTMD 214
V+Y+ ++ GE Y+ A+E IK+ D
Sbjct: 805 LNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKSYD 841
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 OS=Mus musculus GN=Rin3 PE=2 SV=2
Length = 980
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 121 EISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVP-AADDLIPVLVYVLIKANPPSLL 178
+++S+ + K+ + +T I + ++L + P ADD +PVL+YVL ++N +L
Sbjct: 742 KLTSMHKAYSPGKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEML 801
Query: 179 STVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTMD 214
V+Y+ ++ GE Y+ A+E IK D
Sbjct: 802 LNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYD 838
>sp|Q9Y2B5|VP9D1_HUMAN VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=2
SV=2
Length = 631
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 114 PWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAA--------------- 158
P+ AA E+ + K++C+ RTL I P A
Sbjct: 508 PYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIG 567
Query: 159 -DDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTM 213
DDL+P+L +V++++ P L+S + F + + GE Y SA+ +++ +
Sbjct: 568 ADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVELL 624
>sp|Q54PZ6|Y5897_DICDI Putative uncharacterized protein DDB_G0284213 OS=Dictyostelium
discoideum GN=DDB_G0284213 PE=4 SV=2
Length = 702
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 157 AADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMD 214
DD +P+ Y+LI A P L + + Y + F + Y V +AI++IK++D
Sbjct: 426 TGDDALPLTAYLLIHARPKYLATDLAYCSKFILTDIFNSSYGYHLVNLIAAIDYIKSLD 484
>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii
GN=ANKRD27 PE=2 SV=1
Length = 1050
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 116 PAAQAEISSISSYKTAHDKVQCVYRTLNTI-------LNLLSLTSAVPAADDLIPVLVYV 168
P A+ E++ ++ + K+ C+ + + I +NL ++ ADDL+ VL+Y+
Sbjct: 265 PRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQRVNLETM-----CADDLLSVLLYL 319
Query: 169 LIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIK 211
L+K P+ ++ + Y+ +F +++ + E+ Y F +AIE+I+
Sbjct: 320 LVKTEIPNWMANLSYIKNFRFSSSAKDELGYCLTSFEAAIEYIR 363
>sp|Q8MQW8|SPRI_DROME Protein sprint OS=Drosophila melanogaster GN=spri PE=2 SV=2
Length = 1790
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 157 AADDLIPVLVYVLIKANPPSLLSTVQYV-NSFYANKMEGEIQYWWVQFCSAIEFIKT 212
ADD +PVLVYV+ K +++ + GE Y+ CSA++ +KT
Sbjct: 1611 GADDFLPVLVYVVAKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSAVQVLKT 1667
>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens
GN=ANKRD27 PE=1 SV=2
Length = 1050
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 13/104 (12%)
Query: 116 PAAQAEISSISSYKTAHDKVQCVYRTLNTI-------LNLLSLTSAVPAADDLIPVLVYV 168
P A+ E++ ++ + K+ C+ + + I +NL ++ ADDL+ VL+Y+
Sbjct: 265 PRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQRVNLETM-----CADDLLSVLLYL 319
Query: 169 LIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIK 211
L+K P+ ++ + Y+ +F +++ + E+ Y F +AIE+I+
Sbjct: 320 LVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYIR 363
>sp|Q71XE1|Y2257_LISMF UPF0754 membrane protein LMOf2365_2257 OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=LMOf2365_2257 PE=3 SV=1
Length = 377
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 78 DISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDK-VQ 136
D R ++L E NL K IT I KMFH + E+ Y+ A + +
Sbjct: 73 DAIRARLLDE---NLQKEITDT-----ITKMFHEKMQLETTPNELLHHFGYENAEIRSMT 124
Query: 137 CVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEI 196
V +TL +N T DLIP ++ + P + + + + + EG+I
Sbjct: 125 WVEKTLEKEINHFLTTKKTTKMSDLIPTMLESELTTKLPHVTERITSKMTLFVSSEEGKI 184
Query: 197 Q 197
Q
Sbjct: 185 Q 185
>sp|C1KXH9|Y2251_LISMC UPF0754 membrane protein Lm4b_02251 OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=Lm4b_02251 PE=3 SV=1
Length = 377
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 78 DISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDK-VQ 136
D R ++L E NL K IT I KMFH + E+ Y+ A + +
Sbjct: 73 DAIRARLLDE---NLQKEITDT-----ITKMFHEKMQLETTPNELLHHFGYENAEIRSMT 124
Query: 137 CVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEI 196
V +TL +N T DLIP ++ + P + + + + + EG+I
Sbjct: 125 WVEKTLEKEINHFLTTKKTTKMSDLIPTMLESELTTKLPHVTERITSKMTLFVSSEEGKI 184
Query: 197 Q 197
Q
Sbjct: 185 Q 185
>sp|B4LEJ0|EIF3L_DROVI Eukaryotic translation initiation factor 3 subunit L OS=Drosophila
virilis GN=GJ13043 PE=3 SV=1
Length = 538
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 181 VQYVNSFYANKMEGEIQYWWVQFCSAIE 208
++Y +FYAN+M ++Y+ + FC AI+
Sbjct: 26 LEYERNFYANRMPENVKYFLMNFCQAIK 53
>sp|Q8WYP3|RIN2_HUMAN Ras and Rab interactor 2 OS=Homo sapiens GN=RIN2 PE=1 SV=1
Length = 895
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 134 KVQCVYRTLNTILNLLSLTSA-VPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFY-ANK 191
KV + R I ++ S + ADD +PVL YV+ + + L + ++Y+ +
Sbjct: 670 KVMLLLRVCKLIYTVMENNSGRMYGADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSL 729
Query: 192 MEGEIQYWWVQFCSAIEFIKTMDYKE 217
+ GE Y+ A+ IK ++
Sbjct: 730 LHGEGGYYLTSAYGALSLIKNFQEEQ 755
>sp|B4KZ45|EIF3L_DROMO Eukaryotic translation initiation factor 3 subunit L OS=Drosophila
mojavensis GN=GI12903 PE=3 SV=1
Length = 538
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 181 VQYVNSFYANKMEGEIQYWWVQFCSAIE 208
++Y +FYAN+M ++++ + FC AI+
Sbjct: 26 MEYERTFYANRMPDNVKFFLMNFCQAIK 53
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 OS=Mus musculus GN=Rin2 PE=1 SV=3
Length = 903
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 134 KVQCVYRTLNTILNLLSLTSA-VPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFY-ANK 191
KV + R I ++ S + ADD +PVL YV+ + + L + ++Y+ +
Sbjct: 679 KVMLLLRVCKLIYTVMENNSGRMYGADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSL 738
Query: 192 MEGEIQYWWVQFCSAIEFIKTMDYKE 217
+ GE Y+ A+ IK ++
Sbjct: 739 LHGEGGYYLTSAYGALSLIKNFQEEQ 764
>sp|B4IWN1|EIF3L_DROGR Eukaryotic translation initiation factor 3 subunit L OS=Drosophila
grimshawi GN=GH15308 PE=3 SV=1
Length = 540
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 181 VQYVNSFYANKMEGEIQYWWVQFCSAIE 208
++Y ++YAN+M ++Y+ + FC AI+
Sbjct: 28 LEYERNYYANRMPENVKYFLINFCQAIK 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,303,660
Number of Sequences: 539616
Number of extensions: 2934840
Number of successful extensions: 6875
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6829
Number of HSP's gapped (non-prelim): 35
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)