Your job contains 1 sequence.
>psy5853
MVLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDR
AVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQA
EISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLST
VQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5853
(217 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1C268 - symbol:GAPVD1 "Uncharacterized protein... 522 3.2e-50 2
UNIPROTKB|A5D794 - symbol:GAPVD1 "GTPase-activating prote... 515 7.0e-49 2
UNIPROTKB|E2RA33 - symbol:GAPVD1 "Uncharacterized protein... 514 9.1e-49 2
MGI|MGI:1913941 - symbol:Gapvd1 "GTPase activating protei... 514 1.0e-48 2
UNIPROTKB|E2RA13 - symbol:GAPVD1 "Uncharacterized protein... 514 1.0e-48 2
RGD|1307479 - symbol:Gapvd1 "GTPase activating protein an... 514 1.0e-48 2
UNIPROTKB|E2RA32 - symbol:GAPVD1 "Uncharacterized protein... 514 1.1e-48 2
ZFIN|ZDB-GENE-040718-117 - symbol:gapvd1 "GTPase activati... 505 3.6e-48 2
UNIPROTKB|F8W9S7 - symbol:GAPVD1 "GTPase-activating prote... 514 5.4e-48 1
UNIPROTKB|Q14C86 - symbol:GAPVD1 "GTPase-activating prote... 514 5.9e-48 1
UNIPROTKB|F1RS34 - symbol:GAPVD1 "Uncharacterized protein... 514 5.9e-48 1
UNIPROTKB|A2RV61 - symbol:gapvd1 "GTPase-activating prote... 498 5.1e-47 2
FB|FBgn0030286 - symbol:CG1657 species:7227 "Drosophila m... 409 1.2e-36 1
UNIPROTKB|Q29HW3 - symbol:GA14078 "Receptor-mediated endo... 375 5.1e-33 1
WB|WBGene00004377 - symbol:rme-6 species:6239 "Caenorhabd... 366 2.2e-32 1
UNIPROTKB|Q9GYH7 - symbol:rme-6 "Receptor-mediated endocy... 366 2.2e-32 1
UNIPROTKB|A8WVM4 - symbol:rme-6 "Receptor-mediated endocy... 321 1.4e-27 1
ZFIN|ZDB-GENE-040426-813 - symbol:rabgef1l "RAB guanine n... 188 1.8e-15 2
TAIR|locus:2092211 - symbol:VPS9A species:3702 "Arabidops... 202 2.1e-15 1
TAIR|locus:2184727 - symbol:VPS9B "AT5G09320" species:370... 194 2.8e-14 1
DICTYBASE|DDB_G0291115 - symbol:DDB_G0291115 "vacuolar so... 184 1.6e-13 2
UNIPROTKB|Q2TBX8 - symbol:RABGEF1 "RABGEF1 protein" speci... 184 1.7e-13 1
UNIPROTKB|O18973 - symbol:RABGEF1 "Rab5 GDP/GTP exchange ... 184 1.7e-13 1
UNIPROTKB|F1RJI2 - symbol:LOC100516668 "Uncharacterized p... 184 1.7e-13 1
UNIPROTKB|E9PFK9 - symbol:RABGEF1 "Rab5 GDP/GTP exchange ... 184 1.8e-13 1
UNIPROTKB|B4DZM7 - symbol:RABGEF1 "Rab5 GDP/GTP exchange ... 184 1.8e-13 1
UNIPROTKB|E7ERJ8 - symbol:KCTD7 "BTB/POZ domain-containin... 184 2.0e-13 1
MGI|MGI:1929459 - symbol:Rabgef1 "RAB guanine nucleotide ... 183 2.2e-13 1
UNIPROTKB|F6Y7P9 - symbol:RABGEF1 "Uncharacterized protei... 183 2.2e-13 1
RGD|1307295 - symbol:Rabgef1 "RAB guanine nucleotide exch... 183 2.3e-13 1
UNIPROTKB|Q9UJ41 - symbol:RABGEF1 "Rab5 GDP/GTP exchange ... 184 3.2e-13 1
UNIPROTKB|E1C0P2 - symbol:RABGEF1 "Uncharacterized protei... 181 3.6e-13 1
UNIPROTKB|E2R706 - symbol:RABGEF1 "Uncharacterized protei... 183 4.0e-13 1
DICTYBASE|DDB_G0271844 - symbol:DDB_G0271844 "Rho GTPase ... 157 6.1e-13 2
POMBASE|SPBC4F6.10 - symbol:vps901 "guanyl-nucleotide exc... 169 9.3e-12 1
ZFIN|ZDB-GENE-040426-1486 - symbol:rabgef1 "RAB guanine n... 167 1.2e-11 1
FB|FBgn0262937 - symbol:Rabex-5 "Rabaptin-5-associated ex... 166 2.7e-11 1
DICTYBASE|DDB_G0289495 - symbol:DDB_G0289495 "vacuolar so... 167 4.3e-11 1
WB|WBGene00012644 - symbol:rabx-5 species:6239 "Caenorhab... 157 1.6e-10 1
UNIPROTKB|Q8I100 - symbol:rabx-5 "Protein RABX-5" species... 157 1.6e-10 1
ASPGD|ASPL0000018244 - symbol:AN3678 species:162425 "Emer... 159 1.7e-10 1
DICTYBASE|DDB_G0285073 - symbol:DDB_G0285073 "vacuolar so... 155 4.3e-10 1
DICTYBASE|DDB_G0272038 - symbol:rgfA "Vps9 domain-contain... 144 5.1e-08 1
CGD|CAL0006139 - symbol:orf19.5533 species:5476 "Candida ... 126 1.9e-05 1
DICTYBASE|DDB_G0275413 - symbol:DDB_G0275413 "DUF726 fami... 127 2.6e-05 1
SGD|S000004563 - symbol:VPS9 "Guanine nucleotide exchange... 115 0.00020 1
UNIPROTKB|Q96NW4 - symbol:ANKRD27 "Ankyrin repeat domain-... 116 0.00046 1
>UNIPROTKB|E1C268 [details] [associations]
symbol:GAPVD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0051056 "regulation of small GTPase mediated signal
transduction" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032794 "GTPase activating protein binding" evidence=IEA]
[GO:0051223 "regulation of protein transport" evidence=IEA]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0005829 GO:GO:0007165 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005085
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GO:GO:0051223 Gene3D:1.10.506.10 GeneTree:ENSGT00530000063341
OMA:HSYPERL EMBL:AADN02026317 IPI:IPI00583672
Ensembl:ENSGALT00000001466 Uniprot:E1C268
Length = 1440
Score = 522 (188.8 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
Identities = 95/174 (54%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NHK
Sbjct: 1264 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHKA 1323
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1324 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1383
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYAN + GE YWW+QF +A+EFIKT+D
Sbjct: 1384 FVPVLVFVLIKANPPCLLSTVQYISSFYANCLSGEESYWWMQFTAAVEFIKTID 1437
Score = 43 (20.2 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 20 GTAEYRRRTYEFVDNN 35
GT ++++R E VD+N
Sbjct: 239 GTEKFKQRVQEMVDSN 254
>UNIPROTKB|A5D794 [details] [associations]
symbol:GAPVD1 "GTPase-activating protein and VPS9
domain-containing protein 1" species:9913 "Bos taurus" [GO:0051223
"regulation of protein transport" evidence=ISS] [GO:0032794 "GTPase
activating protein binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0005085 "guanyl-nucleotide exchange factor
activity" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0005768 "endosome" evidence=IEA] [GO:0006897 "endocytosis"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
[GO:0051056 "regulation of small GTPase mediated signal
transduction" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616
PROSITE:PS50018 Pfam:PF02204 GO:GO:0005829 GO:GO:0007165
GO:GO:0016020 GO:GO:0005096 GO:GO:0043547 SUPFAM:SSF48350
GO:GO:0005768 GO:GO:0051056 GO:GO:0006897 GO:GO:0005085
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GO:GO:0051223 Gene3D:1.10.506.10 PROSITE:PS00509 GO:GO:0032794
EMBL:BC140474 IPI:IPI00704893 RefSeq:NP_001095990.1
UniGene:Bt.20982 ProteinModelPortal:A5D794 PRIDE:A5D794
Ensembl:ENSBTAT00000015341 GeneID:539646 KEGG:bta:539646 CTD:26130
eggNOG:NOG275317 GeneTree:ENSGT00530000063341 HOGENOM:HOG000038022
HOVERGEN:HBG107936 OMA:HSYPERL NextBio:20878130 Uniprot:A5D794
Length = 1413
Score = 515 (186.3 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1237 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1296
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1297 LQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1356
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1357 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1410
Score = 37 (18.1 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>UNIPROTKB|E2RA33 [details] [associations]
symbol:GAPVD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0007165 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005622 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 Gene3D:1.10.506.10
GeneTree:ENSGT00530000063341 EMBL:AAEX03006882
Ensembl:ENSCAFT00000032150 Uniprot:E2RA33
Length = 1416
Score = 514 (186.0 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1240 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1299
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1300 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1359
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1360 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1413
Score = 37 (18.1 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>MGI|MGI:1913941 [details] [associations]
symbol:Gapvd1 "GTPase activating protein and VPS9 domains 1"
species:10090 "Mus musculus" [GO:0005085 "guanyl-nucleotide
exchange factor activity" evidence=ISO;IMP] [GO:0005096 "GTPase
activator activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005622 "intracellular" evidence=IEA] [GO:0005768
"endosome" evidence=IEA] [GO:0005829 "cytosol" evidence=ISO;IDA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0032794 "GTPase activating protein binding" evidence=ISO;IMP]
[GO:0050790 "regulation of catalytic activity" evidence=IMP]
[GO:0051056 "regulation of small GTPase mediated signal
transduction" evidence=IEA] [GO:0051223 "regulation of protein
transport" evidence=ISO;IMP] InterPro:IPR001936 InterPro:IPR008936
Pfam:PF00616 PROSITE:PS50018 MGI:MGI:1913941 Pfam:PF02204
GO:GO:0005829 GO:GO:0007165 GO:GO:0016020 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0005768 GO:GO:0051056
GO:GO:0006897 GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 GO:GO:0051223 Gene3D:1.10.506.10
PROSITE:PS00509 EMBL:AL929106 GO:GO:0032794 CTD:26130
eggNOG:NOG275317 GeneTree:ENSGT00530000063341 HOVERGEN:HBG107936
OMA:HSYPERL ChiTaRS:GAPVD1 EMBL:EF155419 EMBL:AK129381
EMBL:AK014474 EMBL:AK088851 EMBL:AK003521 EMBL:AK134776
EMBL:AK150026 EMBL:AK165047 EMBL:AL845262 EMBL:BC031478
EMBL:BC043715 EMBL:BC048847 EMBL:BC057164 EMBL:BC060123
IPI:IPI00406596 IPI:IPI00889216 IPI:IPI00889225 IPI:IPI00889231
IPI:IPI00889244 IPI:IPI00889253 RefSeq:NP_079985.2
UniGene:Mm.156452 UniGene:Mm.393397 ProteinModelPortal:Q6PAR5
SMR:Q6PAR5 STRING:Q6PAR5 PhosphoSite:Q6PAR5 PaxDb:Q6PAR5
PRIDE:Q6PAR5 Ensembl:ENSMUST00000028224 Ensembl:ENSMUST00000102800
Ensembl:ENSMUST00000113099 GeneID:66691 KEGG:mmu:66691
UCSC:uc008jiq.1 UCSC:uc008jir.1 UCSC:uc012bug.1 InParanoid:Q6PAR5
OrthoDB:EOG4548XR NextBio:322389 Bgee:Q6PAR5 CleanEx:MM_GAPVD1
Genevestigator:Q6PAR5 Uniprot:Q6PAR5
Length = 1458
Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1282 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1341
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1342 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1401
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1402 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1455
Score = 37 (18.1 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>UNIPROTKB|E2RA13 [details] [associations]
symbol:GAPVD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0007165 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005622 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 Gene3D:1.10.506.10
GeneTree:ENSGT00530000063341 EMBL:AAEX03006882
Ensembl:ENSCAFT00000032152 Uniprot:E2RA13
Length = 1460
Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1284 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1343
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1344 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1403
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1404 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1457
Score = 37 (18.1 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>RGD|1307479 [details] [associations]
symbol:Gapvd1 "GTPase activating protein and VPS9 domains 1"
species:10116 "Rattus norvegicus" [GO:0005085 "guanyl-nucleotide
exchange factor activity" evidence=ISO] [GO:0005096 "GTPase
activator activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0007165
"signal transduction" evidence=IEA] [GO:0032794 "GTPase activating
protein binding" evidence=ISO] [GO:0050790 "regulation of catalytic
activity" evidence=ISO] [GO:0051056 "regulation of small GTPase
mediated signal transduction" evidence=IEA] [GO:0051223 "regulation
of protein transport" evidence=ISO] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 RGD:1307479
Pfam:PF02204 GO:GO:0005829 GO:GO:0007165 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005085
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GO:GO:0051223 Gene3D:1.10.506.10 GeneTree:ENSGT00530000063341
OrthoDB:EOG4548XR IPI:IPI00949820 Ensembl:ENSRNOT00000066961
UCSC:RGD:1307479 ArrayExpress:D4A022 Uniprot:D4A022
Length = 1463
Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1287 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1346
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1347 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1406
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1407 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1460
Score = 37 (18.1 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>UNIPROTKB|E2RA32 [details] [associations]
symbol:GAPVD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0007165 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005622 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 Gene3D:1.10.506.10
GeneTree:ENSGT00530000063341 OMA:HSYPERL EMBL:AAEX03006882
Ensembl:ENSCAFT00000032151 Uniprot:E2RA32
Length = 1480
Score = 514 (186.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1304 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1363
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1364 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1423
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1424 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1477
Score = 37 (18.1 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 20 GTAEYRRRTYEFVDNN 35
G+ +R++ E VD+N
Sbjct: 239 GSDRFRQKVQEMVDSN 254
>ZFIN|ZDB-GENE-040718-117 [details] [associations]
symbol:gapvd1 "GTPase activating protein and VPS9
domains 1" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=IEA] [GO:0005096 "GTPase activator
activity" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616
PROSITE:PS50018 Pfam:PF02204 ZFIN:ZDB-GENE-040718-117 GO:GO:0007165
GO:GO:0005096 GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0051056
GO:GO:0005622 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 Gene3D:1.10.506.10 GeneTree:ENSGT00530000063341
EMBL:BX005399 EMBL:BX511073 IPI:IPI00920790
Ensembl:ENSDART00000112854 Uniprot:E7F237
Length = 1472
Score = 505 (182.8 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 89/167 (53%), Positives = 126/167 (75%)
Query: 50 QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
QL A++AI+R+V++R + A YPN DGDI RD++ HEH++ L+++++ NHK L+IP+++
Sbjct: 1303 QLQDAQMAIERSVMNRIFKLAFYPNQDGDIHRDELFHEHIQRLSRVVSANHKALQIPEVY 1362
Query: 110 HSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADDLIPVLVY 167
E PWP+AQAEI +I++YKT DKVQC+ R AVP ADD +PVLV+
Sbjct: 1363 LKEAPWPSAQAEIKTINAYKTPRDKVQCILRMCSTIMNLLSLANEDAVPGADDFVPVLVF 1422
Query: 168 VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
VLIKANPP LLST+QY+N+FYA+++ GE YWW+QF +A+EFIKT+D
Sbjct: 1423 VLIKANPPCLLSTIQYINNFYASRLSGEECYWWMQFTAAVEFIKTID 1469
Score = 41 (19.5 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 20 GTAEYRRRTYEFVDNN 35
GT EYRR+ V+ N
Sbjct: 239 GTDEYRRKVQAAVEEN 254
>UNIPROTKB|F8W9S7 [details] [associations]
symbol:GAPVD1 "GTPase-activating protein and VPS9
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0005096 "GTPase activator activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=IEA] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204
GO:GO:0007165 GO:GO:0005096 GO:GO:0043547 SUPFAM:SSF48350
GO:GO:0051056 GO:GO:0005622 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 Gene3D:1.10.506.10 EMBL:AL627223
EMBL:AL354710 HGNC:HGNC:23375 ChiTaRS:GAPVD1 IPI:IPI00946050
ProteinModelPortal:F8W9S7 SMR:F8W9S7 Ensembl:ENST00000394083
ArrayExpress:F8W9S7 Bgee:F8W9S7 Uniprot:F8W9S7
Length = 1412
Score = 514 (186.0 bits), Expect = 5.4e-48, P = 5.4e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1236 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1295
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1296 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1355
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1356 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1409
>UNIPROTKB|Q14C86 [details] [associations]
symbol:GAPVD1 "GTPase-activating protein and VPS9
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0007165 "signal transduction" evidence=IEA] [GO:0051056
"regulation of small GTPase mediated signal transduction"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0005768 "endosome"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0032794 "GTPase activating
protein binding" evidence=IMP] [GO:0051223 "regulation of protein
transport" evidence=IMP] InterPro:IPR001936 InterPro:IPR008936
Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204 GO:GO:0005829
GO:GO:0007165 GO:GO:0016020 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0005768 EMBL:CH471090 GO:GO:0051056
GO:GO:0006897 GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 GO:GO:0051223 Gene3D:1.10.506.10
PROSITE:PS00509 GO:GO:0032794 CTD:26130 eggNOG:NOG275317
HOVERGEN:HBG107936 OMA:HSYPERL EMBL:DQ233254 EMBL:AB040954
EMBL:AL627223 EMBL:AL354710 EMBL:BC013635 EMBL:BC021119
EMBL:BC114937 EMBL:BC114962 EMBL:AK000126 EMBL:AL080196
EMBL:AL834325 IPI:IPI00292753 IPI:IPI00302156 IPI:IPI00852719
IPI:IPI00873087 IPI:IPI00883910 IPI:IPI00888069 PIR:T12506
RefSeq:NP_056450.2 UniGene:Hs.495134 ProteinModelPortal:Q14C86
SMR:Q14C86 IntAct:Q14C86 MINT:MINT-1631145 STRING:Q14C86
DMDM:172046859 PaxDb:Q14C86 PRIDE:Q14C86 Ensembl:ENST00000265956
Ensembl:ENST00000297933 Ensembl:ENST00000312123
Ensembl:ENST00000394104 Ensembl:ENST00000394105
Ensembl:ENST00000470056 Ensembl:ENST00000495955 GeneID:26130
KEGG:hsa:26130 UCSC:uc004bpp.3 UCSC:uc004bpq.3 UCSC:uc004bpr.3
UCSC:uc004bps.3 UCSC:uc010mwx.3 UCSC:uc010mwy.1
GeneCards:GC09P128024 H-InvDB:HIX0008383 HGNC:HGNC:23375
HPA:HPA029386 HPA:HPA029387 MIM:611714 neXtProt:NX_Q14C86
PharmGKB:PA142671748 ChiTaRS:GAPVD1 GenomeRNAi:26130 NextBio:48153
PMAP-CutDB:Q14C86 ArrayExpress:Q14C86 Bgee:Q14C86
Genevestigator:Q14C86 Uniprot:Q14C86
Length = 1478
Score = 514 (186.0 bits), Expect = 5.9e-48, P = 5.9e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1302 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1361
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1362 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1421
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1422 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1475
>UNIPROTKB|F1RS34 [details] [associations]
symbol:GAPVD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051223 "regulation of protein transport" evidence=IEA]
[GO:0032794 "GTPase activating protein binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005085 "guanyl-nucleotide
exchange factor activity" evidence=IEA] [GO:0051056 "regulation of
small GTPase mediated signal transduction" evidence=IEA]
[GO:0007165 "signal transduction" evidence=IEA] [GO:0005096 "GTPase
activator activity" evidence=IEA] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204
GO:GO:0005829 GO:GO:0007165 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005085 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 GO:GO:0051223
Gene3D:1.10.506.10 GeneTree:ENSGT00530000063341 OMA:HSYPERL
EMBL:CU929944 EMBL:FP312771 Ensembl:ENSSSCT00000006160
Uniprot:F1RS34
Length = 1478
Score = 514 (186.0 bits), Expect = 5.9e-48, P = 5.9e-48
Identities = 93/174 (53%), Positives = 130/174 (74%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A++AI+R+V++R + A YPN DGDI RDQVLHEH++ L+K++T NH+
Sbjct: 1302 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1361
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ+EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1362 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1421
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANPP LLSTVQY++SFYA+ + GE YWW+QF +A+EFIKT+D
Sbjct: 1422 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1475
>UNIPROTKB|A2RV61 [details] [associations]
symbol:gapvd1 "GTPase-activating protein and VPS9
domain-containing protein 1" species:8355 "Xenopus laevis"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0032794
"GTPase activating protein binding" evidence=ISS] [GO:0051223
"regulation of protein transport" evidence=ISS] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204
GO:GO:0005829 GO:GO:0007165 GO:GO:0016020 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0005768 GO:GO:0051056
GO:GO:0006897 GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 GO:GO:0051223 Gene3D:1.10.506.10
PROSITE:PS00509 GO:GO:0032794 CTD:26130 HOVERGEN:HBG107936
EMBL:BC133191 RefSeq:NP_001091308.1 UniGene:Xl.19818
ProteinModelPortal:A2RV61 PRIDE:A2RV61 GeneID:100037133
KEGG:xla:100037133 Xenbase:XB-GENE-997392 Uniprot:A2RV61
Length = 1452
Score = 498 (180.4 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 91/174 (52%), Positives = 127/174 (72%)
Query: 43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
+ +++ QL A+IAI+R++++R + A PN D DI RDQVLHEH+K L+K++T NH+
Sbjct: 1276 WQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRA 1335
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
L+IP+++ E PWP+AQ EI +IS+YKT DKVQC+ R +VP ADD
Sbjct: 1336 LQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEYSVPGADD 1395
Query: 161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
+PVLV+VLIKANP LLSTVQY++SFY+N++ GE YWW+QF +A+EFIKT+D
Sbjct: 1396 FVPVLVFVLIKANPTYLLSTVQYISSFYSNRLIGEESYWWMQFTAAVEFIKTID 1449
Score = 37 (18.1 bits), Expect = 5.1e-47, Sum P(2) = 5.1e-47
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 18 GGGTAEYRRRTYEFVDNN 35
G GT +R+R V+ N
Sbjct: 237 GKGTEAFRQRVQAMVETN 254
>FB|FBgn0030286 [details] [associations]
symbol:CG1657 species:7227 "Drosophila melanogaster"
[GO:0017112 "Rab guanyl-nucleotide exchange factor activity"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA] [GO:0005096
"GTPase activator activity" evidence=IEA] [GO:0051056 "regulation
of small GTPase mediated signal transduction" evidence=IEA]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0005829 GO:GO:0007165 GO:GO:0016020
GO:GO:0005096 GO:GO:0043547 SUPFAM:SSF48350 EMBL:AE014298
GO:GO:0051056 GO:GO:0006897 GO:GO:0005085 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 GO:GO:0051223
Gene3D:1.10.506.10 PROSITE:PS00509 GO:GO:0032794 eggNOG:NOG275317
GeneTree:ENSGT00530000063341 InterPro:IPR024767 Pfam:PF12871
EMBL:AY061391 EMBL:EU706774 EMBL:EU706775 EMBL:EU706776
EMBL:EU706777 EMBL:EU706778 EMBL:EU706779 EMBL:EU706780
EMBL:EU706781 EMBL:EU706782 EMBL:EU706783 EMBL:EU706784
EMBL:EU706785 EMBL:EU706786 EMBL:EU706787 EMBL:EU706788
RefSeq:NP_572704.1 UniGene:Dm.132 ProteinModelPortal:Q9VZ08
SMR:Q9VZ08 PaxDb:Q9VZ08 EnsemblMetazoa:FBtr0073448 GeneID:32070
KEGG:dme:Dmel_CG1657 UCSC:CG1657-RA FlyBase:FBgn0030286
InParanoid:Q9VZ08 OMA:IISDTWS OrthoDB:EOG4KKWHS PhylomeDB:Q9VZ08
ChiTaRS:CG1657 GenomeRNAi:32070 NextBio:776661 Bgee:Q9VZ08
Uniprot:Q9VZ08
Length = 1712
Score = 409 (149.0 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 77/189 (40%), Positives = 117/189 (61%)
Query: 28 TYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHE 87
T EFV++ ++ RS + Q+ A++AI+R ++ + Y M+PN D D+SRD+VL
Sbjct: 1522 TEEFVESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSA 1581
Query: 88 HVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXXXXX 147
H+ L + + P H L I + + E PW AQ ++ +++YKT +K+QC+
Sbjct: 1582 HIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMS 1641
Query: 148 XXXXXXA-VPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSA 206
VPAADDL+PVL+YV+I ANPP LLSTV+Y++ F K+EGE +++W F S
Sbjct: 1642 LLRMSSGRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGKKLEGEDEFYWTLFGSV 1701
Query: 207 IEFIKTMDY 215
++FIKTMDY
Sbjct: 1702 VKFIKTMDY 1710
>UNIPROTKB|Q29HW3 [details] [associations]
symbol:GA14078 "Receptor-mediated endocytosis protein 6
homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0032794
"GTPase activating protein binding" evidence=ISS] [GO:0051223
"regulation of protein transport" evidence=ISS] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204
GO:GO:0005829 GO:GO:0007165 GO:GO:0016020 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0006897
GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 GO:GO:0051223 EMBL:CH379064 Gene3D:1.10.506.10
PROSITE:PS00509 GO:GO:0032794 eggNOG:NOG275317 InterPro:IPR024767
Pfam:PF12871 OrthoDB:EOG4KKWHS RefSeq:XP_001354590.2 GeneID:4814905
KEGG:dpo:Dpse_GA14078 FlyBase:FBgn0074109 InParanoid:Q29HW3
Uniprot:Q29HW3
Length = 1774
Score = 375 (137.1 bits), Expect = 5.1e-33, P = 5.1e-33
Identities = 70/167 (41%), Positives = 103/167 (61%)
Query: 50 QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
Q+ A+ AI+R ++ Y M+PN D D+SRD VL H+ L + + P H L I + +
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEY 1665
Query: 110 HSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXA-VPAADDLIPVLVYV 168
E PW AQ ++ +++YKT +K+QC+ VPAADDL+PVL+YV
Sbjct: 1666 LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRVPAADDLLPVLIYV 1725
Query: 169 LIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDY 215
+I ANPP LLSTV+Y++ F K++GE +++W F S ++FIKTMDY
Sbjct: 1726 VIMANPPYLLSTVEYISCFLGRKLDGENEFYWTLFGSVVKFIKTMDY 1772
>WB|WBGene00004377 [details] [associations]
symbol:rme-6 species:6239 "Caenorhabditis elegans"
[GO:0005096 "GTPase activator activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0051056 "regulation of small
GTPase mediated signal transduction" evidence=IEA] [GO:0006897
"endocytosis" evidence=IMP] [GO:0045334 "clathrin-coated endocytic
vesicle" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005769 "early endosome" evidence=IDA] [GO:2000369 "regulation
of clathrin-mediated endocytosis" evidence=IMP] [GO:0017137 "Rab
GTPase binding" evidence=IPI] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IGI] [GO:0032851 "positive
regulation of Rab GTPase activity" evidence=IGI] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204
GO:GO:0005829 GO:GO:0005886 GO:GO:0007165 GO:GO:0005096
SUPFAM:SSF48350 GO:GO:0018996 GO:GO:0006897 GO:GO:2000369
GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769
InterPro:IPR013995 SMART:SM00167 GO:GO:0051223 GO:GO:0032851
Gene3D:1.10.506.10 PROSITE:PS00509 GO:GO:0045334 GO:GO:0032794
eggNOG:NOG275317 GeneTree:ENSGT00530000063341 HOGENOM:HOG000154147
OMA:VETEHRR EMBL:AY750054 EMBL:FO080361 PIR:T25788 PIR:T31057
RefSeq:NP_508208.2 UniGene:Cel.22673 ProteinModelPortal:Q9GYH7
SMR:Q9GYH7 DIP:DIP-25631N IntAct:Q9GYH7 MINT:MINT-1116995
STRING:Q9GYH7 PaxDb:Q9GYH7 PRIDE:Q9GYH7 EnsemblMetazoa:F49E7.1a
GeneID:180463 KEGG:cel:CELE_F49E7.1 UCSC:F49E7.1a CTD:180463
WormBase:F49E7.1a WormBase:F49E7.1b InParanoid:Q9GYH7
NextBio:909496 Uniprot:Q9GYH7
Length = 1093
Score = 366 (133.9 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 78/195 (40%), Positives = 115/195 (58%)
Query: 22 AEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISR 81
AE+ + F+ +R ++ + +S A I+R VI Y A YPN D D R
Sbjct: 899 AEFLKNLLTFL-RDRLMQNVDWNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHR 957
Query: 82 DQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR- 140
D++L + ++ ++TP + +L+IP+ H E PWP+AQAE+S + Y TA DK+ CV R
Sbjct: 958 DKLLRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRC 1017
Query: 141 -XXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKME-GEIQY 198
AV +ADDL PVLV+V+IKANP +LLS VQ+V +F +++E G Y
Sbjct: 1018 CDVINNLVALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAY 1077
Query: 199 WWVQFCSAIEFIKTM 213
+WV F SA+E+IKT+
Sbjct: 1078 YWVNFKSAVEYIKTI 1092
>UNIPROTKB|Q9GYH7 [details] [associations]
symbol:rme-6 "Receptor-mediated endocytosis protein 6"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0051223 "regulation of protein transport"
evidence=ISS] [GO:0032794 "GTPase activating protein binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISS]
InterPro:IPR001936 InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
Pfam:PF02204 GO:GO:0005829 GO:GO:0005886 GO:GO:0007165
GO:GO:0005096 SUPFAM:SSF48350 GO:GO:0018996 GO:GO:0006897
GO:GO:2000369 GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205
GO:GO:0005769 InterPro:IPR013995 SMART:SM00167 GO:GO:0051223
GO:GO:0032851 Gene3D:1.10.506.10 PROSITE:PS00509 GO:GO:0045334
GO:GO:0032794 eggNOG:NOG275317 GeneTree:ENSGT00530000063341
HOGENOM:HOG000154147 OMA:VETEHRR EMBL:AY750054 EMBL:FO080361
PIR:T25788 PIR:T31057 RefSeq:NP_508208.2 UniGene:Cel.22673
ProteinModelPortal:Q9GYH7 SMR:Q9GYH7 DIP:DIP-25631N IntAct:Q9GYH7
MINT:MINT-1116995 STRING:Q9GYH7 PaxDb:Q9GYH7 PRIDE:Q9GYH7
EnsemblMetazoa:F49E7.1a GeneID:180463 KEGG:cel:CELE_F49E7.1
UCSC:F49E7.1a CTD:180463 WormBase:F49E7.1a WormBase:F49E7.1b
InParanoid:Q9GYH7 NextBio:909496 Uniprot:Q9GYH7
Length = 1093
Score = 366 (133.9 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 78/195 (40%), Positives = 115/195 (58%)
Query: 22 AEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISR 81
AE+ + F+ +R ++ + +S A I+R VI Y A YPN D D R
Sbjct: 899 AEFLKNLLTFL-RDRLMQNVDWNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHR 957
Query: 82 DQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR- 140
D++L + ++ ++TP + +L+IP+ H E PWP+AQAE+S + Y TA DK+ CV R
Sbjct: 958 DKLLRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRC 1017
Query: 141 -XXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKME-GEIQY 198
AV +ADDL PVLV+V+IKANP +LLS VQ+V +F +++E G Y
Sbjct: 1018 CDVINNLVALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAY 1077
Query: 199 WWVQFCSAIEFIKTM 213
+WV F SA+E+IKT+
Sbjct: 1078 YWVNFKSAVEYIKTI 1092
>UNIPROTKB|A8WVM4 [details] [associations]
symbol:rme-6 "Receptor-mediated endocytosis protein 6"
species:6238 "Caenorhabditis briggsae" [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=ISS] [GO:0032794 "GTPase activating
protein binding" evidence=ISS] [GO:0051223 "regulation of protein
transport" evidence=ISS] InterPro:IPR001936 InterPro:IPR008936
Pfam:PF00616 PROSITE:PS50018 Pfam:PF02204 GO:GO:0005829
GO:GO:0007165 GO:GO:0016020 GO:GO:0005096 GO:GO:0043547
SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0006897 GO:GO:0030136
GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 GO:GO:0051223 Gene3D:1.10.506.10 PROSITE:PS00509
GO:GO:0032794 eggNOG:NOG275317 EMBL:HE600974 RefSeq:XP_002643315.1
ProteinModelPortal:A8WVM4 EnsemblMetazoa:CBG04130 GeneID:8585309
KEGG:cbr:CBG04130 CTD:8585309 WormBase:CBG04130
HOGENOM:HOG000154147 OMA:VETEHRR Uniprot:A8WVM4
Length = 1104
Score = 321 (118.1 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 65/166 (39%), Positives = 102/166 (61%)
Query: 51 LSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFH 110
++ A ++R V+ Y A +PN + D +D++L + + +TP H+ L+IP+
Sbjct: 938 IARAMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLL 997
Query: 111 SECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADDLIPVLVYV 168
E PWP+AQAE+S + +Y TA +K+ C+ R AV +ADDL PVLV+V
Sbjct: 998 GEAPWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVASADDLTPVLVFV 1057
Query: 169 LIKANPPSLLSTVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTM 213
+IKANP SLLS +Q++ +F +++E G Y+WV F SA+E+IKT+
Sbjct: 1058 IIKANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYIKTI 1103
>ZFIN|ZDB-GENE-040426-813 [details] [associations]
symbol:rabgef1l "RAB guanine nucleotide exchange
factor (GEF) 1, like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 Pfam:PF02204 ZFIN:ZDB-GENE-040426-813 GO:GO:0003677
GO:GO:0008270 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 eggNOG:NOG301606 HOGENOM:HOG000070180
HOVERGEN:HBG062584 OrthoDB:EOG42FSHP EMBL:BC045469 IPI:IPI00859614
RefSeq:NP_957235.1 UniGene:Dr.82264 ProteinModelPortal:Q7ZVP0
SMR:Q7ZVP0 GeneID:393915 KEGG:dre:393915 CTD:393915
NextBio:20814891 ArrayExpress:Q7ZVP0 Uniprot:Q7ZVP0
Length = 470
Score = 188 (71.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 48/166 (28%), Positives = 82/166 (49%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVK-----NLAKIITPNHKYLRIPKMFHSE 112
++R V+ R Y P+ D +D + + ++ ++A + P + +IPK+ S
Sbjct: 204 VERYVMGRLYEQLFCPDHTDDEKKDLTVQKRIRALHWVSIAMLCVPLDE--QIPKVSDSV 261
Query: 113 CPWPAAQAEISSISSYKTAHDKVQCVYR-XXXXXXXXXXXXXAVPAADDLIPVLVYVLIK 171
A+ ++ ++ S K +K+ CV R A +ADD +P LVY+++K
Sbjct: 262 ---ERAKTDLINLDSKKVPKEKLACVTRCSKHILTAIQGSKKAAASADDFLPALVYIILK 318
Query: 172 ANPPSLLSTVQYVNSFYANK---MEGEIQYWWVQFCSAIEFIKTMD 214
ANPP L S +QY+ Y N M GE Y++ C A+ FI+ +D
Sbjct: 319 ANPPRLHSNIQYITR-YCNPSRLMSGEDGYYFTNLCCAVSFIEKLD 363
Score = 35 (17.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 8 KPDISNVTGQGGG-TAEYRRRTYEFVDNNRRDYRSGY 43
K +S + Q +AE R T F+D + R GY
Sbjct: 111 KTPVSQSSSQSRQPSAECDRITQHFIDFLKPFQRPGY 147
>TAIR|locus:2092211 [details] [associations]
symbol:VPS9A species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006810 "transport"
evidence=ISS] [GO:0016020 "membrane" evidence=IDA] [GO:0000919
"cell plate assembly" evidence=IMP] [GO:0005089 "Rho
guanyl-nucleotide exchange factor activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009790 "embryo
development" evidence=IMP] [GO:0042546 "cell wall biogenesis"
evidence=IMP] [GO:0048528 "post-embryonic root development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] Pfam:PF02204 GO:GO:0005525 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016020
GO:GO:0005096 GO:GO:0043547 GO:GO:0009790 GO:GO:0005089
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
EMBL:AP000417 EMBL:AB025631 GO:GO:0042546 GO:GO:0048528
eggNOG:NOG301606 PDB:2EFC PDB:2EFD PDB:2EFE PDB:2EFH PDBsum:2EFC
PDBsum:2EFD PDBsum:2EFE PDBsum:2EFH EMBL:AY045810 EMBL:AY079338
IPI:IPI00543757 RefSeq:NP_566645.1 UniGene:At.22893
ProteinModelPortal:Q9LT31 SMR:Q9LT31 STRING:Q9LT31 PaxDb:Q9LT31
PRIDE:Q9LT31 EnsemblPlants:AT3G19770.1 GeneID:821514
KEGG:ath:AT3G19770 TAIR:At3g19770 HOGENOM:HOG000029999
InParanoid:Q9LT31 OMA:MEESEFE PhylomeDB:Q9LT31
ProtClustDB:CLSN2688573 EvolutionaryTrace:Q9LT31
Genevestigator:Q9LT31 GO:GO:0000919 Uniprot:Q9LT31
Length = 520
Score = 202 (76.2 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 53/195 (27%), Positives = 91/195 (46%)
Query: 30 EFVDNNRRDYRSG--YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHE 87
EF +R+ +S + +L A +++ V+++ + N + ++ D+ L +
Sbjct: 52 EFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQ 110
Query: 88 HVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XX 142
+ + + I+P + L I F +E W AQ E+ I+ YK DK+ C+
Sbjct: 111 KMSLVQQFISPEN--LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINN 168
Query: 143 XXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWV 201
P AD+ +PVL+YV IKANPP L S + Y+ + +K+ GE Y++
Sbjct: 169 LLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFT 228
Query: 202 QFCSAIEFIKTMDYK 216
SA FI +D K
Sbjct: 229 NILSAESFISNIDAK 243
>TAIR|locus:2184727 [details] [associations]
symbol:VPS9B "AT5G09320" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006810 "transport" evidence=ISS]
Pfam:PF02204 EMBL:CP002688 EMBL:AL391712 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 IPI:IPI00543083
RefSeq:NP_196494.1 UniGene:At.32529 ProteinModelPortal:Q9FY83
SMR:Q9FY83 EnsemblPlants:AT5G09320.1 GeneID:830791
KEGG:ath:AT5G09320 TAIR:At5g09320 HOGENOM:HOG000152589
InParanoid:Q9FY83 OMA:FASNTED PhylomeDB:Q9FY83
ProtClustDB:CLSN2916871 ArrayExpress:Q9FY83 Genevestigator:Q9FY83
Uniprot:Q9FY83
Length = 712
Score = 194 (73.4 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 52/182 (28%), Positives = 84/182 (46%)
Query: 41 SGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNH 100
SG SD +L A +++ V+++ + N + D+ D+ L + + + + I+P +
Sbjct: 65 SGCSDD---ELDNAGDGLEKYVMTKLFPRVFASNTE-DVISDEKLFQKISLVQQFISPEN 120
Query: 101 KYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XXXXXXXXXXXXXAV 155
L I F ++ W AQ E+ I+ Y DK+ C+ R
Sbjct: 121 --LDIQPTFQNQTSWLLAQKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIASNQNE 178
Query: 156 PAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFIKTMD 214
P AD +PVL+YV IKANPP S + Y+ + +K+ GE Y + SA FI +D
Sbjct: 179 PGADQFLPVLIYVTIKANPPQFHSNLLYIQRYRRQSKLVGEAGYLFTNILSAESFISNID 238
Query: 215 YK 216
K
Sbjct: 239 AK 240
>DICTYBASE|DDB_G0291115 [details] [associations]
symbol:DDB_G0291115 "vacuolar sorting protein 9
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0051056 "regulation of small GTPase mediated signal
transduction" evidence=IEA] [GO:0043547 "positive regulation of
GTPase activity" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005096
"GTPase activator activity" evidence=IEA] InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 PROSITE:PS50018
dictyBase:DDB_G0291115 Pfam:PF02204 GO:GO:0007165 GO:GO:0005096
GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0051056 GO:GO:0005622
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
EMBL:AAFI02000175 eggNOG:NOG275317 RefSeq:XP_635406.1
ProteinModelPortal:Q54F48 EnsemblProtists:DDB0233768 GeneID:8627990
KEGG:ddi:DDB_G0291115 InParanoid:Q54F48 OMA:ARPENIL Uniprot:Q54F48
Length = 1918
Score = 184 (69.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 44/169 (26%), Positives = 90/169 (53%)
Query: 44 SDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNL-AKIITPNHKY 102
S++ + S+A ++R ++++ Y + +IS++ + K+L +K + +H
Sbjct: 1700 SNTTDDEFSIATNTLERNLLTQIYNFTF------NISKEDLTFS--KDLISKFSSIDHGL 1751
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPAADDLI 162
L I + + S+ PW AQ EI I+ YK+ DK++C+ + DD +
Sbjct: 1752 L-IAEKYSSQAPWELAQQEIKKINLYKSPQDKMKCIIDTWNIIFNYTKPFGS-SGPDDFL 1809
Query: 163 PVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIK 211
P++ YV+IKA P ++LS +QY+ + +++ + + W++ S+IE +K
Sbjct: 1810 PIMGYVIIKARPENILSNIQYIELY--SELNDDSEIWFMNLKSSIEIVK 1856
Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 4 PPPIKPDISNVT 15
PPP+KP + + +
Sbjct: 216 PPPLKPFVDDAS 227
>UNIPROTKB|Q2TBX8 [details] [associations]
symbol:RABGEF1 "RABGEF1 protein" species:9913 "Bos taurus"
[GO:1900235 "negative regulation of Kit signaling pathway"
evidence=IEA] [GO:1900165 "negative regulation of interleukin-6
secretion" evidence=IEA] [GO:0060368 "regulation of Fc receptor
mediated stimulatory signaling pathway" evidence=IEA] [GO:0050728
"negative regulation of inflammatory response" evidence=IEA]
[GO:0048261 "negative regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IEA] [GO:0043305 "negative regulation
of mast cell degranulation" evidence=IEA] [GO:0031982 "vesicle"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0002686 "negative regulation of leukocyte
migration" evidence=IEA] [GO:0001933 "negative regulation of
protein phosphorylation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0003677 GO:GO:0008270 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 IPI:IPI00691292 UniGene:Bt.317
HOVERGEN:HBG062584 OMA:RYMSGQA EMBL:DAAA02057950 EMBL:BC109491
SMR:Q2TBX8 STRING:Q2TBX8 Ensembl:ENSBTAT00000005011
InParanoid:Q2TBX8 Uniprot:Q2TBX8
Length = 491
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + L +P + E P +
Sbjct: 211 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 265
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 266 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 325
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 326 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 370
>UNIPROTKB|O18973 [details] [associations]
symbol:RABGEF1 "Rab5 GDP/GTP exchange factor" species:9913
"Bos taurus" [GO:0005515 "protein binding" evidence=IPI]
[GO:0055037 "recycling endosome" evidence=IEA] [GO:0005769 "early
endosome" evidence=IEA] [GO:1900235 "negative regulation of Kit
signaling pathway" evidence=IEA] [GO:1900165 "negative regulation
of interleukin-6 secretion" evidence=IEA] [GO:0060368 "regulation
of Fc receptor mediated stimulatory signaling pathway"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0048261 "negative regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0046580 "negative
regulation of Ras protein signal transduction" evidence=IEA]
[GO:0043305 "negative regulation of mast cell degranulation"
evidence=IEA] [GO:0031982 "vesicle" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0002686
"negative regulation of leukocyte migration" evidence=IEA]
[GO:0001933 "negative regulation of protein phosphorylation"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0046872 GO:GO:0003677 GO:GO:0015031
GO:GO:0008270 GO:GO:0006897 GO:GO:0055037 InterPro:IPR003123
PROSITE:PS51205 GO:GO:0005769 InterPro:IPR013995 SMART:SM00167
EMBL:AJ001119 IPI:IPI00691292 RefSeq:NP_777016.1 UniGene:Bt.317
PDB:2FID PDB:2FIF PDBsum:2FID PDBsum:2FIF ProteinModelPortal:O18973
SMR:O18973 DIP:DIP-29059N IntAct:O18973 STRING:O18973 PRIDE:O18973
GeneID:282335 KEGG:bta:282335 CTD:27342 eggNOG:NOG301606
HOGENOM:HOG000070180 HOVERGEN:HBG062584 InParanoid:O18973
OrthoDB:EOG42FSHP EvolutionaryTrace:O18973 NextBio:20806130
ArrayExpress:O18973 Uniprot:O18973
Length = 492
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + L +P + E P +
Sbjct: 212 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 266
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 267 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 326
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 327 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 371
>UNIPROTKB|F1RJI2 [details] [associations]
symbol:LOC100516668 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:1900235 "negative regulation of Kit signaling
pathway" evidence=IEA] [GO:1900165 "negative regulation of
interleukin-6 secretion" evidence=IEA] [GO:0060368 "regulation of
Fc receptor mediated stimulatory signaling pathway" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0048261 "negative regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0046580 "negative regulation of Ras
protein signal transduction" evidence=IEA] [GO:0043305 "negative
regulation of mast cell degranulation" evidence=IEA] [GO:0031982
"vesicle" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0002686 "negative regulation of
leukocyte migration" evidence=IEA] [GO:0001933 "negative regulation
of protein phosphorylation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0003677 GO:GO:0008270 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 OMA:RYMSGQA EMBL:FP340504
Ensembl:ENSSSCT00000008480 Uniprot:F1RJI2
Length = 492
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + L +P + E P +
Sbjct: 212 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 266
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 267 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKVTKNEPASADDFLPTLIYIVLK 326
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 327 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 371
>UNIPROTKB|E9PFK9 [details] [associations]
symbol:RABGEF1 "Rab5 GDP/GTP exchange factor" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 SMART:SM00259 Pfam:PF02204 GO:GO:0003677
GO:GO:0008270 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 EMBL:AC027644 HGNC:HGNC:17676 ChiTaRS:RABGEF1
IPI:IPI00004974 ProteinModelPortal:E9PFK9 SMR:E9PFK9 PRIDE:E9PFK9
Ensembl:ENST00000439720 ArrayExpress:E9PFK9 Bgee:E9PFK9
Uniprot:E9PFK9
Length = 504
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 45/165 (27%), Positives = 81/165 (49%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 224 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 278
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 279 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 338
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 339 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 383
>UNIPROTKB|B4DZM7 [details] [associations]
symbol:RABGEF1 "Rab5 GDP/GTP exchange factor" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 SMART:SM00259 Pfam:PF02204 GO:GO:0003677
GO:GO:0008270 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 HOGENOM:HOG000070180 HOVERGEN:HBG062584 EMBL:AC027644
UniGene:Hs.530053 UniGene:Hs.709878 HGNC:HGNC:17676 ChiTaRS:RABGEF1
EMBL:AK303006 IPI:IPI00004974 SMR:B4DZM7 STRING:B4DZM7
Ensembl:ENST00000437078 UCSC:uc011kee.2 Uniprot:B4DZM7
Length = 505
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 45/165 (27%), Positives = 81/165 (49%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 225 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 279
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 280 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 339
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 340 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 384
>UNIPROTKB|E7ERJ8 [details] [associations]
symbol:KCTD7 "BTB/POZ domain-containing protein KCTD7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR002653
Pfam:PF01754 PROSITE:PS51036 SMART:SM00259 Pfam:PF02204
GO:GO:0003677 GO:GO:0008270 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 HGNC:HGNC:21957 ChiTaRS:KCTD7
EMBL:AC027644 EMBL:AC006001 EMBL:AC079588 IPI:IPI00963967
ProteinModelPortal:E7ERJ8 SMR:E7ERJ8 Ensembl:ENST00000380828
ArrayExpress:E7ERJ8 Bgee:E7ERJ8 Uniprot:E7ERJ8
Length = 531
Score = 184 (69.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 45/165 (27%), Positives = 81/165 (49%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 251 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 305
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 306 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 365
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 366 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 410
>MGI|MGI:1929459 [details] [associations]
symbol:Rabgef1 "RAB guanine nucleotide exchange factor (GEF)
1" species:10090 "Mus musculus" [GO:0001933 "negative regulation of
protein phosphorylation" evidence=IMP] [GO:0002686 "negative
regulation of leukocyte migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005768 "endosome"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0006897
"endocytosis" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0017112 "Rab guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0031982 "vesicle" evidence=IDA] [GO:0033004
"negative regulation of mast cell activation" evidence=IMP]
[GO:0043305 "negative regulation of mast cell degranulation"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048261 "negative regulation of receptor-mediated
endocytosis" evidence=IMP] [GO:0050728 "negative regulation of
inflammatory response" evidence=IMP] [GO:0060368 "regulation of Fc
receptor mediated stimulatory signaling pathway" evidence=IDA;IMP]
[GO:1900165 "negative regulation of interleukin-6 secretion"
evidence=IMP] [GO:1900235 "negative regulation of Kit signaling
pathway" evidence=IMP] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 SMART:SM00259 MGI:MGI:1929459 Pfam:PF02204
GO:GO:0046872 GO:GO:0003677 GO:GO:0015031 GO:GO:0050728
GO:GO:0008270 GO:GO:0006897 GO:GO:0002686 GO:GO:0055037
GO:GO:0004842 InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769
GO:GO:0031982 InterPro:IPR013995 SMART:SM00167 GO:GO:0048261
GO:GO:0001933 GO:GO:0046580 GO:GO:1900165 GO:GO:0043305
GO:GO:0060368 GeneTree:ENSGT00530000063341 CTD:27342
eggNOG:NOG301606 HOGENOM:HOG000070180 HOVERGEN:HBG062584
OrthoDB:EOG42FSHP EMBL:AF093590 EMBL:AK044568 EMBL:AK146734
EMBL:BC018229 IPI:IPI00124636 RefSeq:NP_001185988.1
RefSeq:NP_064367.1 UniGene:Mm.288639 ProteinModelPortal:Q9JM13
SMR:Q9JM13 STRING:Q9JM13 PhosphoSite:Q9JM13 PaxDb:Q9JM13
PRIDE:Q9JM13 Ensembl:ENSMUST00000026390 Ensembl:ENSMUST00000119797
GeneID:56715 KEGG:mmu:56715 UCSC:uc008zuf.2 InParanoid:Q9JM13
OMA:RYMSGQA NextBio:313183 Bgee:Q9JM13 CleanEx:MM_RABGEF1
Genevestigator:Q9JM13 GermOnline:ENSMUSG00000025340 GO:GO:1900235
Uniprot:Q9JM13
Length = 491
Score = 183 (69.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y + P D +D + + ++ L +TP + L +P + E P +
Sbjct: 211 IEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 265
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ R PA ADD +P L+Y+++K
Sbjct: 266 DMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 325
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 326 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 370
>UNIPROTKB|F6Y7P9 [details] [associations]
symbol:RABGEF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0003677 GO:GO:0008270 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
Ensembl:ENSCAFT00000017144 Uniprot:F6Y7P9
Length = 492
Score = 183 (69.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 44/162 (27%), Positives = 78/162 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + + + SE
Sbjct: 212 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-HWVTPQMLCVPVNEEI-SEVSDMV 269
Query: 118 AQA--EISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIKANP 174
+A +I + S + DK+ C+ + PA ADD +P L+Y+++K NP
Sbjct: 270 VKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNP 329
Query: 175 PSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
P L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 330 PRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 371
>RGD|1307295 [details] [associations]
symbol:Rabgef1 "RAB guanine nucleotide exchange factor (GEF) 1"
species:10116 "Rattus norvegicus" [GO:0001933 "negative regulation
of protein phosphorylation" evidence=IEA;ISO] [GO:0002686 "negative
regulation of leukocyte migration" evidence=IEA;ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017112 "Rab guanyl-nucleotide exchange factor
activity" evidence=ISO] [GO:0031982 "vesicle" evidence=IEA;ISO]
[GO:0033004 "negative regulation of mast cell activation"
evidence=ISO] [GO:0043305 "negative regulation of mast cell
degranulation" evidence=IEA;ISO] [GO:0046580 "negative regulation
of Ras protein signal transduction" evidence=IEA;ISO] [GO:0048261
"negative regulation of receptor-mediated endocytosis"
evidence=IEA;ISO] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA;ISO] [GO:0060368 "regulation of Fc receptor
mediated stimulatory signaling pathway" evidence=IEA;ISO]
[GO:1900165 "negative regulation of interleukin-6 secretion"
evidence=IEA;ISO] [GO:1900235 "negative regulation of Kit signaling
pathway" evidence=IEA;ISO] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 SMART:SM00259 RGD:1307295 Pfam:PF02204
GO:GO:0003677 GO:GO:0008270 EMBL:CH473973 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 CTD:27342 RefSeq:NP_001101803.1
UniGene:Rn.21688 Ensembl:ENSRNOT00000001196 GeneID:360797
KEGG:rno:360797 NextBio:674129 Uniprot:G3V631
Length = 502
Score = 183 (69.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y + P D +D + + ++ L +TP + L +P + E P +
Sbjct: 222 IEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 276
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ R PA ADD +P L+Y+++K
Sbjct: 277 DMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 336
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 337 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 381
>UNIPROTKB|Q9UJ41 [details] [associations]
symbol:RABGEF1 "Rab5 GDP/GTP exchange factor" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006897 "endocytosis"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005769 "early endosome" evidence=IEA] [GO:0055037 "recycling
endosome" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0017112 "Rab guanyl-nucleotide exchange factor activity"
evidence=IDA] InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036
SMART:SM00259 Pfam:PF02204 GO:GO:0046872 GO:GO:0003677
GO:GO:0015031 GO:GO:0008270 GO:GO:0006897 GO:GO:0055037
InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769 GO:GO:0017112
InterPro:IPR013995 SMART:SM00167 GermOnline:ENSG00000154710
PDB:2OT3 PDBsum:2OT3 CTD:27342 eggNOG:NOG301606
HOGENOM:HOG000070180 HOVERGEN:HBG062584 OrthoDB:EOG42FSHP
EMBL:AJ250042 EMBL:DQ230533 EMBL:DQ230534 EMBL:AK127790
EMBL:BT007107 EMBL:AK223329 EMBL:AC027644 EMBL:BC015330
IPI:IPI00418213 IPI:IPI00816003 IPI:IPI00924641 RefSeq:NP_055319.1
UniGene:Hs.530053 UniGene:Hs.709878 PDB:1TXU PDB:2C7M PDB:2C7N
PDBsum:1TXU PDBsum:2C7M PDBsum:2C7N ProteinModelPortal:Q9UJ41
SMR:Q9UJ41 DIP:DIP-29348N IntAct:Q9UJ41 MINT:MINT-1189235
STRING:Q9UJ41 PhosphoSite:Q9UJ41 DMDM:56405102 PRIDE:Q9UJ41
DNASU:27342 Ensembl:ENST00000284957 Ensembl:ENST00000450873
GeneID:27342 KEGG:hsa:27342 UCSC:uc003tvf.3 UCSC:uc003tvh.3
GeneCards:GC07P066205 HGNC:HGNC:17676 HPA:HPA001407 MIM:609700
neXtProt:NX_Q9UJ41 PharmGKB:PA134946532 ChiTaRS:RABGEF1
EvolutionaryTrace:Q9UJ41 GenomeRNAi:27342 NextBio:50418
ArrayExpress:Q9UJ41 CleanEx:HS_RABGEF1 Genevestigator:Q9UJ41
Uniprot:Q9UJ41
Length = 708
Score = 184 (69.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 45/165 (27%), Positives = 81/165 (49%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L + +TP + L +P + + P +
Sbjct: 428 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 482
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 483 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 542
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 543 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 587
>UNIPROTKB|E1C0P2 [details] [associations]
symbol:RABGEF1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0001933 "negative regulation
of protein phosphorylation" evidence=IEA] [GO:0002686 "negative
regulation of leukocyte migration" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0031982
"vesicle" evidence=IEA] [GO:0043305 "negative regulation of mast
cell degranulation" evidence=IEA] [GO:0046580 "negative regulation
of Ras protein signal transduction" evidence=IEA] [GO:0048261
"negative regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0060368 "regulation of Fc receptor
mediated stimulatory signaling pathway" evidence=IEA] [GO:1900165
"negative regulation of interleukin-6 secretion" evidence=IEA]
[GO:1900235 "negative regulation of Kit signaling pathway"
evidence=IEA] InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036
SMART:SM00259 Pfam:PF02204 GO:GO:0003677 GO:GO:0008270
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 CTD:27342 OMA:RYMSGQA
EMBL:AADN02025920 IPI:IPI00576946 RefSeq:XP_415796.2
UniGene:Gga.48513 UniGene:Gga.53522 Ensembl:ENSGALT00000004122
GeneID:417548 KEGG:gga:417548 NextBio:20820833 Uniprot:E1C0P2
Length = 491
Score = 181 (68.8 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + L +P + E P +
Sbjct: 211 IEKYIMTRQYKYVFCPETTDDEKKDLAVQKRIRAL-HWVTP--QMLCVP--VNEEIPEVS 265
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
A +I + S + DK+ C+ + PA ADD +P L+Y+++K
Sbjct: 266 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 325
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
NPP L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 326 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 370
>UNIPROTKB|E2R706 [details] [associations]
symbol:RABGEF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051260 "protein homooligomerization"
evidence=IEA] InterPro:IPR000210 InterPro:IPR003131 Pfam:PF02214
SMART:SM00225 Pfam:PF02204 GO:GO:0051260 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 EMBL:AAEX03004190 EMBL:AAEX03004191
EMBL:AAEX03004192 Ensembl:ENSCAFT00000017144 OMA:INQRRAI
Uniprot:E2R706
Length = 700
Score = 183 (69.5 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 44/162 (27%), Positives = 78/162 (48%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
I++ +++R Y Y P D +D + + ++ L +TP + + + SE
Sbjct: 420 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-HWVTPQMLCVPVNEEI-SEVSDMV 477
Query: 118 AQA--EISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIKANP 174
+A +I + S + DK+ C+ + PA ADD +P L+Y+++K NP
Sbjct: 478 VKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNP 537
Query: 175 PSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
P L S +QY+ F + M GE Y++ C A+ FI+ +D
Sbjct: 538 PRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 579
>DICTYBASE|DDB_G0271844 [details] [associations]
symbol:DDB_G0271844 "Rho GTPase domain containing
protein" species:44689 "Dictyostelium discoideum" [GO:0035091
"phosphatidylinositol binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007264 "small GTPase mediated signal
transduction" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0007154 "cell communication" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001683
InterPro:IPR001806 InterPro:IPR020849 Pfam:PF00071 Pfam:PF00787
PROSITE:PS50195 PROSITE:PS51421 SMART:SM00312
dictyBase:DDB_G0271844 Pfam:PF02204 GO:GO:0005525 GO:GO:0007264
GO:GO:0016020 GO:GO:0003924 EMBL:AAFI02000006 GO:GO:0035091
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
Gene3D:3.30.1520.10 SUPFAM:SSF64268 eggNOG:NOG301606
RefSeq:XP_645538.1 ProteinModelPortal:Q55AI4
EnsemblProtists:DDB0233291 GeneID:8618167 KEGG:ddi:DDB_G0271844
InParanoid:Q55AI4 OMA:ENIDAKQ Uniprot:Q55AI4
Length = 1603
Score = 157 (60.3 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 37/140 (26%), Positives = 71/140 (50%)
Query: 79 ISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCV 138
+ RD +L E + L + P H L I + + W AQ E+ +++ + K++CV
Sbjct: 1261 LERDTLLSERMSKLV-FVEPKH--LEISPIHCDKDLWFTAQQELQALNELYSPSQKLECV 1317
Query: 139 YRXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQ 197
+ + ADD +P L+YV+I AN P+L S ++++ F + ++++ E
Sbjct: 1318 LKCCKIILFLLSNSDSPGGADDFLPHLIYVVIHANVPNLCSNFEFISKFCSQDQLKMERY 1377
Query: 198 YWWVQFCSAIEFIKTMDYKE 217
Y+ F A+ F++ +D K+
Sbjct: 1378 YYLTTFGIAVTFLENIDAKQ 1397
Score = 57 (25.1 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 7 IKPDISNVTGQGG--GTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAID 59
+K + + GG GT++ R T +DNN + + +++N ++S + IAI+
Sbjct: 3 VKDRSGSTSSSGGFIGTSKSRSNT---IDNNNSNINNNNNNNNIAEVSKSTIAIN 54
>POMBASE|SPBC4F6.10 [details] [associations]
symbol:vps901 "guanyl-nucleotide exchange factor Vps901
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005096 "GTPase activator activity" evidence=IEA] [GO:0005829
"cytosol" evidence=ISO] [GO:0006623 "protein targeting to vacuole"
evidence=ISO] InterPro:IPR003892 InterPro:IPR009060 Pfam:PF02845
PROSITE:PS51140 SMART:SM00546 Pfam:PF02204 GO:GO:0005829
GO:GO:0005096 GO:GO:0043547 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005085 InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995
SMART:SM00167 GO:GO:0006623 SUPFAM:SSF46934 eggNOG:NOG301606
EMBL:DQ665299 PIR:T40507 HSSP:Q9UJ41 OrthoDB:EOG4NW2VJ
NextBio:20802002 Uniprot:O74396
Length = 572
Score = 169 (64.5 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 51/197 (25%), Positives = 92/197 (46%)
Query: 30 EFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYP----NG-------DGD 78
+F++ Y S S + ++ AK +++ V++R Y P +G D
Sbjct: 160 KFINEKIEQYEPWASGSQA-EIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDD 218
Query: 79 ISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCV 138
+ D+VL E ++ L + IT + L I K S + A E+ I+ Y DK+ C+
Sbjct: 219 VEEDRVLSEKME-LFQWITEEN--LDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICL 275
Query: 139 YRXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQ 197
+AD +P+L++V+++A P L+S +QY+ F + K+ GE+
Sbjct: 276 LNCCKVIFSYLRNVVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVM 335
Query: 198 YWWVQFCSAIEFIKTMD 214
Y+ A+ FI+T+D
Sbjct: 336 YYLSTLMGAMSFIETLD 352
>ZFIN|ZDB-GENE-040426-1486 [details] [associations]
symbol:rabgef1 "RAB guanine nucleotide exchange
factor (GEF) 1" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002653 Pfam:PF01754
PROSITE:PS51036 SMART:SM00259 Pfam:PF02204
ZFIN:ZDB-GENE-040426-1486 GO:GO:0003677 GO:GO:0008270
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GeneTree:ENSGT00530000063341 CTD:27342 HOGENOM:HOG000070180
HOVERGEN:HBG062584 OrthoDB:EOG42FSHP OMA:RYMSGQA EMBL:AL935293
EMBL:BC061953 IPI:IPI00481337 RefSeq:NP_957137.1 UniGene:Dr.123825
UniGene:Dr.9342 SMR:Q6P6Y4 STRING:Q6P6Y4 Ensembl:ENSDART00000018977
Ensembl:ENSDART00000138243 GeneID:393816 KEGG:dre:393816
InParanoid:Q6P6Y4 NextBio:20814806 Uniprot:Q6P6Y4
Length = 502
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 50/193 (25%), Positives = 85/193 (44%)
Query: 37 RDYRSGYSDS--NSVQLSLAKI-----AIDRAVISRCYMYAMYPNGDGDISRDQVLHEHV 89
+D+ G SD N + S K+ +++ +++R Y P D +D +
Sbjct: 193 QDFYQGMSDRLLNHFKGSSEKVDRVMDQVEKYIMTRLYKSVFCPETSDDEKKDLATQHRI 252
Query: 90 KNL-----AKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXX 144
+ L + P + IP++ S A +I + S + DK+ C+
Sbjct: 253 RALHWVTIQMLCVPVEE--EIPEVSDSVVK---AITDIIEMDSKRVPRDKLACITSCSKH 307
Query: 145 XXXXXXXXXAVPA-ADDLIPVLVYVLIKANPPSLLSTVQYVNSFY--ANKMEGEIQYWWV 201
PA ADD +P L+Y+++KANPP L S +QY+ F + M GE Y++
Sbjct: 308 IFNAIRVTKNEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFT 367
Query: 202 QFCSAIEFIKTMD 214
C A+ FI+ +D
Sbjct: 368 NLCCAVAFIEKLD 380
>FB|FBgn0262937 [details] [associations]
symbol:Rabex-5 "Rabaptin-5-associated exchange factor for
Rab5 ortholog (H. sapiens)" species:7227 "Drosophila melanogaster"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007474 "imaginal
disc-derived wing vein specification" evidence=IMP] [GO:0035214
"eye-antennal disc development" evidence=IMP] [GO:0040015 "negative
regulation of multicellular organism growth" evidence=IMP]
[GO:0031398 "positive regulation of protein ubiquitination"
evidence=IDA] [GO:0005622 "intracellular" evidence=IC] [GO:0017112
"Rab guanyl-nucleotide exchange factor activity" evidence=IDA]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 EMBL:AE014296 GO:GO:0003677 GO:GO:0007474
GO:GO:0008270 GO:GO:0040015 GO:GO:0031398 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 GO:GO:0035214
GeneTree:ENSGT00530000063341 eggNOG:NOG301606 EMBL:AY058763
RefSeq:NP_612093.1 UniGene:Dm.7401 SMR:Q9W0H9 MINT:MINT-969750
EnsemblMetazoa:FBtr0072663 GeneID:38144 KEGG:dme:Dmel_CG9139
UCSC:CG9139-RA CTD:38144 FlyBase:FBgn0262937 InParanoid:Q9W0H9
OMA:RCCRHIF OrthoDB:EOG4QZ621 GenomeRNAi:38144 NextBio:807171
Uniprot:Q9W0H9
Length = 696
Score = 166 (63.5 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 47/161 (29%), Positives = 81/161 (50%)
Query: 59 DRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAA 118
++ V+++ + + P D D + + ++ L+ I T H I ++ +SE
Sbjct: 215 EKVVMTQNHKFLFSPYFTTDEDSDVKVQKRIRQLSWI-TAKHLDCSIDEV-NSEARDLVY 272
Query: 119 QA--EISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIKANPP 175
A E+ I SY + +K+QC +R PA ADD +P L++V++KANP
Sbjct: 273 NAISELVGIDSYYSPQEKLQCTWRCCRHIFELLKRATGGPASADDFLPALIFVVLKANPV 332
Query: 176 SLLSTVQYVNSFY-ANK-MEGEIQYWWVQFCSAIEFIKTMD 214
L S + +V F A++ M GE Y++ CSAI FI+ ++
Sbjct: 333 RLHSNINFVTRFTNASRLMSGESGYYFTNLCSAIAFIENLN 373
>DICTYBASE|DDB_G0289495 [details] [associations]
symbol:DDB_G0289495 "vacuolar sorting protein 9
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] dictyBase:DDB_G0289495 Pfam:PF02204 EMBL:AAFI02000141
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
eggNOG:NOG301606 RefSeq:XP_636178.1 ProteinModelPortal:Q54HF9
EnsemblProtists:DDB0234181 GeneID:8627165 KEGG:ddi:DDB_G0289495
InParanoid:Q54HF9 OMA:YLVECIN Uniprot:Q54HF9
Length = 1197
Score = 167 (63.8 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 52/194 (26%), Positives = 90/194 (46%)
Query: 23 EYRRRTYEFVDN--NRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDIS 80
+ R +FVDN N +S S+ +L+ + + + V+ + Y Y P+ + +
Sbjct: 627 DLREALLDFVDNMQNTLTLDPQWSQSSEEELNYSSHHLQQYVLEKIYDYVFQPSEE-EAK 685
Query: 81 RDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR 140
+DQ L + L+ IT H + IP SE W A + I+ ++ KV + +
Sbjct: 686 KDQDLSMLIDKLS-FITLEH--MEIPIYGFSEAMWYKAGKYLLKINFTQSCRHKVMYIMK 742
Query: 141 X-XXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYW 199
+ AD L+P L++VL+K NPP L S V +++ F ++ + E Y+
Sbjct: 743 CCKTILKHFSTHLKELSGADFLLPNLIWVLLKTNPPFLHSNVIFISKF-SDSSDSEAIYY 801
Query: 200 WVQFCSAIEFIKTM 213
Q SAI FI+ +
Sbjct: 802 LTQLISAIYFIENL 815
>WB|WBGene00012644 [details] [associations]
symbol:rabx-5 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005769 "early endosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IGI]
[GO:0034058 "endosomal vesicle fusion" evidence=IMP] [GO:0032851
"positive regulation of Rab GTPase activity" evidence=IGI]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0003677 GO:GO:0018996 GO:GO:0008270
InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769 InterPro:IPR013995
SMART:SM00167 GO:GO:0032851 GeneTree:ENSGT00530000063341
EMBL:AL031633 eggNOG:NOG301606 GO:GO:0034058 RefSeq:NP_499337.3
ProteinModelPortal:Q8I100 SMR:Q8I100 IntAct:Q8I100 STRING:Q8I100
PaxDb:Q8I100 EnsemblMetazoa:Y39A1A.5 GeneID:176481
KEGG:cel:CELE_Y39A1A.5 UCSC:Y39A1A.5 CTD:176481 WormBase:Y39A1A.5
HOGENOM:HOG000021299 InParanoid:Q8I100 OMA:LSCALEF NextBio:892764
Uniprot:Q8I100
Length = 517
Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 38/164 (23%), Positives = 82/164 (50%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSEC---P 114
+++ + + CY N + +++ D L + +++L +T +L +F +
Sbjct: 200 VEKYISTFCYSIFFCANHEEEVA-DMSLQDRIRSL-HWVTAG--FLETKMVFKKQTVRDK 255
Query: 115 WPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANP 174
A +E+ I++ ++A +K+ C+ + A +AD+ +P L+YVL + NP
Sbjct: 256 IDEAISELIEINAKRSAFEKLDCLTKSCKAIFEALKESEASTSADEFLPTLIYVLFRGNP 315
Query: 175 PSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
P + S V++++ F A M GE Y++ A+EF + M+++
Sbjct: 316 PLIQSNVKFISRFAIPARLMSGEAAYFFTNLSCALEFARNMNHE 359
>UNIPROTKB|Q8I100 [details] [associations]
symbol:rabx-5 "Protein RABX-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002653 Pfam:PF01754 PROSITE:PS51036 SMART:SM00259
Pfam:PF02204 GO:GO:0003677 GO:GO:0018996 GO:GO:0008270
InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769 InterPro:IPR013995
SMART:SM00167 GO:GO:0032851 GeneTree:ENSGT00530000063341
EMBL:AL031633 eggNOG:NOG301606 GO:GO:0034058 RefSeq:NP_499337.3
ProteinModelPortal:Q8I100 SMR:Q8I100 IntAct:Q8I100 STRING:Q8I100
PaxDb:Q8I100 EnsemblMetazoa:Y39A1A.5 GeneID:176481
KEGG:cel:CELE_Y39A1A.5 UCSC:Y39A1A.5 CTD:176481 WormBase:Y39A1A.5
HOGENOM:HOG000021299 InParanoid:Q8I100 OMA:LSCALEF NextBio:892764
Uniprot:Q8I100
Length = 517
Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 38/164 (23%), Positives = 82/164 (50%)
Query: 58 IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSEC---P 114
+++ + + CY N + +++ D L + +++L +T +L +F +
Sbjct: 200 VEKYISTFCYSIFFCANHEEEVA-DMSLQDRIRSL-HWVTAG--FLETKMVFKKQTVRDK 255
Query: 115 WPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANP 174
A +E+ I++ ++A +K+ C+ + A +AD+ +P L+YVL + NP
Sbjct: 256 IDEAISELIEINAKRSAFEKLDCLTKSCKAIFEALKESEASTSADEFLPTLIYVLFRGNP 315
Query: 175 PSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
P + S V++++ F A M GE Y++ A+EF + M+++
Sbjct: 316 PLIQSNVKFISRFAIPARLMSGEAAYFFTNLSCALEFARNMNHE 359
>ASPGD|ASPL0000018244 [details] [associations]
symbol:AN3678 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR003892 InterPro:IPR009060 Pfam:PF02845
PROSITE:PS51140 Pfam:PF02204 EMBL:BN001302 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 SUPFAM:SSF46934
EnsemblFungi:CADANIAT00005054 HOGENOM:HOG000192136 OMA:QYILRFR
Uniprot:C8V7N4
Length = 767
Score = 159 (61.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 42/140 (30%), Positives = 72/140 (51%)
Query: 78 DISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPW-PAAQAEISSISSYKTAHDKVQ 136
D+ RD+VL + ++ + + ++L I + S + AQ E+ I+ Y+ DKV
Sbjct: 408 DVERDEVLAQKMRIYSWV---REEHLDIAPVSSSGRRFLNLAQQELLKINGYRAPRDKVI 464
Query: 137 CVYRX-XXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFY-ANKMEG 194
C+ + +AD IP+L+YV+++ANP L+S +QY+ F K+ G
Sbjct: 465 CILNCCKVIFGLLRNAKKSDTSADSFIPLLIYVVLQANPEHLVSNIQYILRFRNQEKLGG 524
Query: 195 EIQYWWVQFCSAIEFIKTMD 214
E Y+ AI+FI+T+D
Sbjct: 525 EAGYYLSSLSGAIQFIETLD 544
>DICTYBASE|DDB_G0285073 [details] [associations]
symbol:DDB_G0285073 "vacuolar sorting protein 9
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] dictyBase:DDB_G0285073 Pfam:PF02204 EMBL:AAFI02000073
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
eggNOG:NOG301606 RefSeq:XP_639976.1 ProteinModelPortal:Q54NU1
EnsemblProtists:DDB0234179 GeneID:8624888 KEGG:ddi:DDB_G0285073
InParanoid:Q54NU1 OMA:IEESEFY Uniprot:Q54NU1
Length = 726
Score = 155 (59.6 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 43/137 (31%), Positives = 71/137 (51%)
Query: 82 DQVLHEHVKNLAKIITPNHKYLRIPKMFHS-ECPWPAAQAEISSISSYKTAHDKVQCVYR 140
D L +H+ + + P H L I + +S E A +E+ I++YKT DK+ CVY
Sbjct: 258 DLKLFKHI-TIHGFLEPQH--LDIQQFINSNEQRQNLAISELRKINTYKTPRDKMVCVYN 314
Query: 141 --XXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIKANPPSLLSTVQYVNSFY-ANKMEGEI 196
P+ AD+ +P+L+YV++K+NP L S + YVN+F ++M EI
Sbjct: 315 CCKVIFKLLKSVNPNGNPSGADEFLPILIYVVLKSNPIMLKSNITYVNTFRDQSRMMTEI 374
Query: 197 QYWWVQFCSAIEFIKTM 213
++ SA+ FI+ +
Sbjct: 375 ACYFTHLVSAVSFIENI 391
>DICTYBASE|DDB_G0272038 [details] [associations]
symbol:rgfA "Vps9 domain-containing protein RgfA"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0272038 Pfam:PF02204 EMBL:AAFI02000007
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
RefSeq:XP_645360.1 ProteinModelPortal:Q55AA6
EnsemblProtists:DDB0234180 GeneID:8618249 KEGG:ddi:DDB_G0272038
eggNOG:NOG281184 InParanoid:Q55AA6 Uniprot:Q55AA6
Length = 715
Score = 144 (55.7 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 44/173 (25%), Positives = 86/173 (49%)
Query: 47 NSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIP 106
N +++ + + +++ + SR Y ++ + + I +D +L EH+ I TP++ L I
Sbjct: 409 NEIEIIIYEF-MEQYIASRLYR-RIFSSQEA-IQKDTLLCEHISRFQHI-TPSN--LDIN 462
Query: 107 KMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXX--AVPAADDLIPV 164
S Q E+ IS +K+ +K+ C+ + +V AD L+P+
Sbjct: 463 DSIISTQFLEQIQEELLYISIFKSPREKLMCIKKSFKLLFQLLSKTQLPSVVGADLLLPI 522
Query: 165 LVYVLIKANPPSLLSTVQYVNSFY-ANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
+++ LIK+N P L S +Q+++ F +E E Y+ V +A FI+ M ++
Sbjct: 523 VIFCLIKSNLPFLWSNLQFISLFRDPTLIESETNYFLVTMITAASFIENMTFE 575
>CGD|CAL0006139 [details] [associations]
symbol:orf19.5533 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0006623 "protein targeting to vacuole"
evidence=IEA] [GO:0000011 "vacuole inheritance" evidence=IEA]
[GO:0043130 "ubiquitin binding" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=IEA]
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF02845 PROSITE:PS51140
CGD:CAL0006139 Pfam:PF02204 InterPro:IPR003123 PROSITE:PS51205
InterPro:IPR013995 SMART:SM00167 EMBL:AACQ01000034
EMBL:AACQ01000033 SUPFAM:SSF46934 eggNOG:NOG301606
RefSeq:XP_719097.1 RefSeq:XP_719214.1 ProteinModelPortal:Q5AC17
GeneID:3639113 GeneID:3639221 KEGG:cal:CaO19.12979
KEGG:cal:CaO19.5533 Uniprot:Q5AC17
Length = 765
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 118 AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSL 177
A E++ I++Y+ DK+ C+ AD IP+L+ V+ KA L
Sbjct: 492 AITELNKINNYRAPRDKIICILNACKIIFSYLKLSKQETNADSFIPILILVIFKAKTDHL 551
Query: 178 LSTVQYVNSFYANK--MEGEIQYWWVQFCSAIEFIKTM 213
+S + Y+ +F + + GE Y+ A+EFI+ +
Sbjct: 552 ISNIHYIENFRGQEWLLHGETSYYLSSIQGAVEFIQNI 589
>DICTYBASE|DDB_G0275413 [details] [associations]
symbol:DDB_G0275413 "DUF726 family protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
dictyBase:DDB_G0275413 Pfam:PF02204 GO:GO:0016021 EMBL:AAFI02000013
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
eggNOG:NOG280803 InterPro:IPR007941 PANTHER:PTHR17920 Pfam:PF05277
ProtClustDB:CLSZ2846849 RefSeq:XP_643686.2
ProteinModelPortal:Q553T5 PRIDE:Q553T5 EnsemblProtists:DDB0234182
GeneID:8619953 KEGG:ddi:DDB_G0275413 InParanoid:Q553T5 OMA:CRHISKG
Uniprot:Q553T5
Length = 1268
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/139 (24%), Positives = 69/139 (49%)
Query: 80 SRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVY 139
S+D+ L ++ + ++ P + Y I S W AA A++S I+ Y+ DK+ C+
Sbjct: 346 SKDKQLKSIIQYVKQL--PINDYSDIDPTKLSSVNWEAAIADLSLINLYEAPRDKIVCIL 403
Query: 140 RXXXXXXXXXXXXXAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANK-MEGEIQY 198
R AD+ I L+Y+ ++ NP L S ++++ F A+ M E Y
Sbjct: 404 RSCRHISKGLNKFGTF-GADEFIGYLIYLTVQTNPSYLYSNLKFIELFRASDFMVSEEGY 462
Query: 199 WWVQFCSAIEFIKTMDYKE 217
+++ A +++++ ++K+
Sbjct: 463 YFISLKMASDYLES-NFKD 480
>SGD|S000004563 [details] [associations]
symbol:VPS9 "Guanine nucleotide exchange factor involved in
vacuolar transport" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000011 "vacuole
inheritance" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=IMP]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0043130 "ubiquitin binding" evidence=IDA]
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF02845 PROSITE:PS51140
SMART:SM00546 SGD:S000004563 Pfam:PF02204 GO:GO:0005829
EMBL:BK006946 GO:GO:0005085 GO:GO:0000011 EMBL:Z46660
InterPro:IPR003123 PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167
GO:GO:0006623 GO:GO:0043130 SUPFAM:SSF46934
GeneTree:ENSGT00530000063341 eggNOG:NOG301606 PDB:1P3Q PDBsum:1P3Q
OrthoDB:EOG4NW2VJ EMBL:U50142 EMBL:U20373 PIR:S49629
RefSeq:NP_013612.1 PDB:1MN3 PDBsum:1MN3 ProteinModelPortal:P54787
SMR:P54787 DIP:DIP-4526N IntAct:P54787 MINT:MINT-516456
STRING:P54787 PaxDb:P54787 PeptideAtlas:P54787 EnsemblFungi:YML097C
GeneID:854876 KEGG:sce:YML097C HOGENOM:HOG000141911 OMA:EDVCIAK
EvolutionaryTrace:P54787 NextBio:977816 Genevestigator:P54787
GermOnline:YML097C Uniprot:P54787
Length = 451
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 45/183 (24%), Positives = 82/183 (44%)
Query: 44 SDSNSVQLSLAKIAIDRAVISRCYMYAMY-----PNGDG---DISRDQVLHEHVKNLAKI 95
S + + + K+ + + + SRC+ ++Y P D D++ D L E +++ +
Sbjct: 128 SKMRNAKEGMEKLIMGK-LYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHY-RF 185
Query: 96 ITPNHKYLRIPK-MFHSECPW--PAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXX 152
I+P L IP M ++ A E+ I+ +K+ DK+ CV
Sbjct: 186 ISPI--MLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHT 243
Query: 153 XAVP-AADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFI 210
AD IPVL+Y ++K L+S V Y+ F + + + GE +Y+ +A+ FI
Sbjct: 244 KLEQNGADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFI 303
Query: 211 KTM 213
+
Sbjct: 304 MNL 306
>UNIPROTKB|Q96NW4 [details] [associations]
symbol:ANKRD27 "Ankyrin repeat domain-containing protein
27" species:9606 "Homo sapiens" [GO:0005096 "GTPase activator
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IDA] [GO:0005769 "early endosome"
evidence=IDA] [GO:0045022 "early endosome to late endosome
transport" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005764 "lysosome" evidence=IDA]
InterPro:IPR002110 Pfam:PF00023 PRINTS:PR01415 PROSITE:PS50088
SMART:SM00248 Pfam:PF02204 GO:GO:0005096 GO:GO:0043547
eggNOG:COG0666 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0005764 GO:GO:0005085
GO:GO:0045022 InterPro:IPR003123 PROSITE:PS51205 GO:GO:0005769
EMBL:AL136784 EMBL:AK054561 EMBL:BC050529 EMBL:AF447882
EMBL:AL834335 IPI:IPI00102377 RefSeq:NP_115515.2 UniGene:Hs.59236
PDB:4B93 PDBsum:4B93 ProteinModelPortal:Q96NW4 SMR:Q96NW4
IntAct:Q96NW4 MINT:MINT-1198049 STRING:Q96NW4 PhosphoSite:Q96NW4
DMDM:125987706 PaxDb:Q96NW4 PRIDE:Q96NW4 DNASU:84079
Ensembl:ENST00000306065 GeneID:84079 KEGG:hsa:84079 UCSC:uc002ntn.1
CTD:84079 GeneCards:GC19M033087 HGNC:HGNC:25310 HPA:HPA042769
neXtProt:NX_Q96NW4 PharmGKB:PA134893411 HOGENOM:HOG000033958
HOVERGEN:HBG080845 InParanoid:Q96NW4 OMA:CLFKHIA OrthoDB:EOG48PMJG
ChiTaRS:ANKRD27 GenomeRNAi:84079 NextBio:73299 Bgee:Q96NW4
CleanEx:HS_ANKRD27 Genevestigator:Q96NW4 InterPro:IPR013995
SMART:SM00167 Uniprot:Q96NW4
Length = 1050
Score = 116 (45.9 bits), Expect = 0.00046, P = 0.00046
Identities = 36/165 (21%), Positives = 76/165 (46%)
Query: 50 QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
Q++L K A++ V Y G + S D ++ ++L + K + + F
Sbjct: 204 QMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFNKITRSLQDL---QQKDIGVKPEF 260
Query: 110 HSECPWPAAQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA--ADDLIPVLVY 167
P A+ E++ ++ + K+ C+ + + ADDL+ VL+Y
Sbjct: 261 SFNIP--RAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQRVNLETMCADDLLSVLLY 318
Query: 168 VLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIK 211
+L+K P+ ++ + Y+ +F +++ + E+ Y F +AIE+I+
Sbjct: 319 LLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYIR 363
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 217 204 0.00094 111 3 11 22 0.48 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 598 (64 KB)
Total size of DFA: 180 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.01u 0.09s 18.10t Elapsed: 00:00:06
Total cpu time: 18.01u 0.09s 18.10t Elapsed: 00:00:06
Start: Thu Aug 15 14:27:18 2013 End: Thu Aug 15 14:27:24 2013