RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5853
         (217 letters)



>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
           (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
           9606]}
          Length = 249

 Score =  151 bits (382), Expect = 4e-46
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 3/178 (1%)

Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
                  ++      I++ +++R Y Y   P    D  +D  + + ++ L  +       
Sbjct: 58  RGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCV 117

Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDL 161
                +         A  +I  + S +   DK+ C+ +    I N + +T   PA ADD 
Sbjct: 118 PVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDF 177

Query: 162 IPVLVYVLIKANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
           +P L+Y+++K NPP L S +QY+  F   +  M GE  Y++   C A+ FI+ +D + 
Sbjct: 178 LPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQS 235


>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase
           {Garden sage (Salvia officinalis) [TaxId: 38868]}
          Length = 328

 Score = 28.7 bits (64), Expect = 0.45
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 17  QGGGTAEY-RRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNG 75
           +   + E         +    +D  +  +        +   A +   I R     +Y +G
Sbjct: 250 ETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAAN---IGRV-AQFIYLHG 305

Query: 76  DGDISRDQVLHEHVKNLAKIITP 98
           DG   +    +EH+  L  +  P
Sbjct: 306 DGFGVQHSKTYEHIAGL--LFEP 326


>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA)
           {Escherichia coli [TaxId: 562]}
          Length = 253

 Score = 27.8 bits (62), Expect = 1.0
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 9   PDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYM 68
           PDI+   G       Y           + ++ +GY      +L L+       +     +
Sbjct: 170 PDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYG---GAELGLS-----YPITKHVRL 221

Query: 69  YAMYPNGDGD 78
           Y    +G G+
Sbjct: 222 YTQVYSGYGE 231


>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
           {Thermotoga maritima [TaxId: 2336]}
          Length = 120

 Score = 24.6 bits (53), Expect = 6.2
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 143 NTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSL-LSTVQYVNSFYANKMEGEIQYWWV 201
             + + +++ S   A   + P+L   L +    +  +          A     EI     
Sbjct: 8   LELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEAR 67

Query: 202 QFCSAIEFIKTM 213
                    K +
Sbjct: 68  FVVPGDVIQKMV 79


>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia
           enterocolitica, YfuA [TaxId: 630]}
          Length = 311

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 1/83 (1%)

Query: 134 KVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVN-SFYANKM 192
           KV       + + N L    +   AD  +      ++  +   L + +  V  +  A + 
Sbjct: 31  KVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAVTQAQVAQEY 90

Query: 193 EGEIQYWWVQFCSAIEFIKTMDY 215
             E   W      +  F+   + 
Sbjct: 91  RPEHGRWTGIAARSTVFVYNPEK 113


>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
           (P-protein) {Thermus thermophilus [TaxId: 274]}
          Length = 471

 Score = 24.8 bits (53), Expect = 9.7
 Identities = 5/50 (10%), Positives = 14/50 (28%)

Query: 65  RCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECP 114
           R + Y      +G      +   + + L +++      +        E  
Sbjct: 328 RAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFV 377


>d1wh4a_ a.77.1.2 (A:) Interleukin-1 receptor-associated kinase 4,
           IRAK4 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 127

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 141 TLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPS 176
           T+  +++LL        A  L+P  V   +K+ PPS
Sbjct: 87  TVGDLVDLLVQIELFAPATLLLPDAVPQTVKSLPPS 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,435
Number of extensions: 34726
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)