Query psy5854
Match_columns 392
No_of_seqs 322 out of 1759
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:46:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 1.1E-51 2.5E-56 391.8 9.2 168 1-168 148-316 (459)
2 KOG3644|consensus 100.0 5.2E-47 1.1E-51 374.8 7.4 168 1-168 158-325 (457)
3 KOG3642|consensus 100.0 7.9E-44 1.7E-48 340.4 9.3 167 1-168 156-324 (466)
4 TIGR00860 LIC Cation transport 100.0 3E-38 6.5E-43 318.0 5.5 177 1-177 144-323 (459)
5 KOG3646|consensus 100.0 1.7E-31 3.8E-36 255.3 4.9 172 168-347 22-203 (486)
6 KOG3646|consensus 100.0 2.1E-30 4.5E-35 247.9 2.2 174 1-175 139-316 (486)
7 KOG3645|consensus 100.0 2.6E-29 5.7E-34 252.4 9.2 178 1-178 142-324 (449)
8 TIGR00860 LIC Cation transport 100.0 2.7E-28 5.8E-33 245.9 10.9 141 172-313 30-170 (459)
9 KOG3645|consensus 99.9 1.9E-26 4.2E-31 231.7 9.5 139 172-313 29-168 (449)
10 KOG3643|consensus 99.9 2.3E-26 5E-31 219.4 8.1 142 171-313 33-174 (459)
11 PF02931 Neur_chan_LBD: Neurot 99.9 5.1E-24 1.1E-28 194.7 9.0 136 174-313 2-140 (217)
12 KOG3642|consensus 99.9 6.1E-23 1.3E-27 197.2 7.8 142 170-313 41-182 (466)
13 KOG3644|consensus 99.9 2.7E-22 5.8E-27 199.1 10.0 143 171-313 38-184 (457)
14 PF02932 Neur_chan_memb: Neuro 99.7 4.9E-21 1.1E-25 172.7 -12.6 67 101-167 1-67 (237)
15 PF02931 Neur_chan_LBD: Neurot 99.6 3.9E-14 8.5E-19 129.3 12.7 94 1-94 114-217 (217)
16 PF14494 DUF4436: Domain of un 84.7 0.27 5.9E-06 45.8 -0.2 131 15-159 97-232 (256)
No 1
>KOG3643|consensus
Probab=100.00 E-value=1.1e-51 Score=391.80 Aligned_cols=168 Identities=43% Similarity=0.827 Sum_probs=161.1
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCC-CCccccccccccceeEEeeeeeeeeeecCCC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPE-MPLAVDEKIELPQLQLVKNKTADCSQVYSTG 79 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~-~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~ 79 (392)
+.+++|++.++.|+|||++||+|+|+|+|+++||+|+++||.+.|..+ +++...+.++++|+.+.+.........+.+|
T Consensus 148 Vlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG 227 (459)
T KOG3643|consen 148 VLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTG 227 (459)
T ss_pred EEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccc
Confidence 468999999999999999999999999999999999999999999974 4777788899999999999998888899999
Q ss_pred cceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccccccccc
Q psy5854 80 NFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDA 159 (392)
Q Consensus 80 ~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~~ 159 (392)
+|++|.+.|.|+|+.+||++++|+|+.+++++||+||||+.+++++|+++|+|++|+|++++...+++||++||+++||+
T Consensus 228 ~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDi 307 (459)
T KOG3643|consen 228 NYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDV 307 (459)
T ss_pred cceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecc
Q psy5854 160 FMSACTVSS 168 (392)
Q Consensus 160 ~l~~~l~~~ 168 (392)
|+.+|+++.
T Consensus 308 YL~vCFvfV 316 (459)
T KOG3643|consen 308 YLGVCFVFV 316 (459)
T ss_pred hhhHHHHHH
Confidence 999998743
No 2
>KOG3644|consensus
Probab=100.00 E-value=5.2e-47 Score=374.80 Aligned_cols=168 Identities=50% Similarity=0.920 Sum_probs=163.5
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCCCc
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGN 80 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ 80 (392)
++++.|++++.+|+|||++||+|+|+|.+.++||+|+.+|+++.|...+++...+++.++++++.+.....+...|++|.
T Consensus 158 V~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~ 237 (457)
T KOG3644|consen 158 VWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGV 237 (457)
T ss_pred EEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCCCcccccCccCCceeccceeeccccccccCcc
Confidence 46889999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccccccccce
Q psy5854 81 FTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAF 160 (392)
Q Consensus 81 ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~~~ 160 (392)
|+|++++|+++|+.+||+++.|+|+.+++++||++|||+++|+++|++||+|+||+++++...+...||++||+++||+|
T Consensus 238 ~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDVW 317 (457)
T KOG3644|consen 238 YSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDVW 317 (457)
T ss_pred eEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecc
Q psy5854 161 MSACTVSS 168 (392)
Q Consensus 161 l~~~l~~~ 168 (392)
+++|+++.
T Consensus 318 m~~C~~FI 325 (457)
T KOG3644|consen 318 MGVCMTFI 325 (457)
T ss_pred HHHHHHHH
Confidence 99998754
No 3
>KOG3642|consensus
Probab=100.00 E-value=7.9e-44 Score=340.44 Aligned_cols=167 Identities=34% Similarity=0.714 Sum_probs=157.2
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccc--cccccceeEEeeeeeeeeeecCC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDE--KIELPQLQLVKNKTADCSQVYST 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~~~~~~~ 78 (392)
+.|++|++..+.|+|++.+||+|.|.|+++|||++|+.+|+++.|... ++++++ .+.+.|+++.+.+...+.....+
T Consensus 156 vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~-~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~ 234 (466)
T KOG3642|consen 156 VLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR-SVEVNETDSWSLDQFDLLGVSVGTEDIKTSS 234 (466)
T ss_pred ceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc-cEEEcCCCCccccceeeecccccccceEecC
Confidence 468999999999999999999999999999999999999999999865 455544 45799999999999888888899
Q ss_pred CcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcccccccc
Q psy5854 79 GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVD 158 (392)
Q Consensus 79 ~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~ 158 (392)
|+|+.+.+.|+|+|+.||+++++|+||++.++|||++||++.+++++|.++|+|++|+|+++....+.++|+++|.|++|
T Consensus 235 gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD 314 (466)
T KOG3642|consen 235 GEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALD 314 (466)
T ss_pred CCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecc
Q psy5854 159 AFMSACTVSS 168 (392)
Q Consensus 159 ~~l~~~l~~~ 168 (392)
+|+.+|+++.
T Consensus 315 ~fIavCf~Fv 324 (466)
T KOG3642|consen 315 VFIAVCFIFV 324 (466)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 4
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=3e-38 Score=318.05 Aligned_cols=177 Identities=40% Similarity=0.744 Sum_probs=155.0
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCcccc--ccccccceeEEeeeee-eeeeecC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVD--EKIELPQLQLVKNKTA-DCSQVYS 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~--~~~~~~~w~l~~~~~~-~~~~~~~ 77 (392)
++|..|..++++|+||+++||||+|+|+|+|+||+|+.+++.+.|..++++..+ .+..++||++.+.... .+.....
T Consensus 144 V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~ 223 (459)
T TIGR00860 144 VLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETN 223 (459)
T ss_pred EEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECCCCceEechhhccccCceEEEeeeeeeeEecccC
Confidence 479999999999999999999999999999999999999999998765443333 3448999999985543 3323345
Q ss_pred CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccccccc
Q psy5854 78 TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAV 157 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i 157 (392)
.+.|+++.++++++|+++||++++++|++++++++|++||+|+++.++|+++|+|++|++++++..+++.||++||+|+|
T Consensus 224 ~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli 303 (459)
T TIGR00860 224 TGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAI 303 (459)
T ss_pred CCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHH
Confidence 67899999999999999999999999999999999999999999779999999999999999999999999999999999
Q ss_pred cceeeeeeeccchhhhhccc
Q psy5854 158 DAFMSACTVSSTSLTFNDIL 177 (392)
Q Consensus 158 ~~~l~~~l~~~~~~~~~~l~ 177 (392)
|.|+.+|+++.+.+.+..++
T Consensus 304 ~~y~~~~~~~v~~sli~tv~ 323 (459)
T TIGR00860 304 DVYFAVCMAFVFLALLETAF 323 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999876665554443
No 5
>KOG3646|consensus
Probab=99.97 E-value=1.7e-31 Score=255.28 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=145.2
Q ss_pred cchhhhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceee
Q psy5854 168 STSLTFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLL 246 (392)
Q Consensus 168 ~~~~~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l 246 (392)
.+.....+|+.+|+++|++..||+ +.++|+.|++++.++||.+||||+|.+++|+|++.+|+|.+|+|||++++++..+
T Consensus 22 ~~s~~E~rL~~dL~~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dv 101 (486)
T KOG3646|consen 22 MGSVAEYRLLTDLLENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDI 101 (486)
T ss_pred hcCHHHHHHHHHHHhhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceee
Confidence 455678899999999999999998 9999999999999999999999999999999999999999999999998887777
Q ss_pred ehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeec---------CCCCCCCCC
Q psy5854 247 EVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVL---------GDSDLPKPP 317 (392)
Q Consensus 247 ~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpf---------d~~~~~~~~ 317 (392)
.-+ .+++|.||+.+|||++.+|+....+|..++ +||.|.|.||+++|++|++|++.||| +||+|.+..
T Consensus 102 R~p-~~~iWkPDVLLYNSade~FDsTy~tN~Vv~--~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~ 178 (486)
T KOG3646|consen 102 RFP-GGNIWKPDVLLYNSADEQFDSTYKTNYVVY--STGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGIL 178 (486)
T ss_pred ccC-CccccCCceeccccccccCCCcceeeEEEc--cCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEccee
Confidence 655 459999999999999999999998886554 99999999999999999999887776 678887665
Q ss_pred CCCchhHHHHHHhhhccccccCCCCCCCCC
Q psy5854 318 EPAKQDKIFELAAKENARLLTGQPMIPPNH 347 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (392)
.+.+.+.... ..++..+.++..+..
T Consensus 179 lDL~~~~~~g-----~~Dls~yi~NGEW~L 203 (486)
T KOG3646|consen 179 LDLRIDDEDG-----GIDLSTYIPNGEWDL 203 (486)
T ss_pred eeeeeccccC-----CcchhhcccCCceee
Confidence 4322211111 145666777777743
No 6
>KOG3646|consensus
Probab=99.96 E-value=2.1e-30 Score=247.88 Aligned_cols=174 Identities=24% Similarity=0.337 Sum_probs=159.8
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCC-CCccccccccccceeEEeeeeeeeeeecCCC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPE-MPLAVDEKIELPQLQLVKNKTADCSQVYSTG 79 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~-~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~ 79 (392)
+.|.+|-.++++|.+|++.||||.|.|.++||||+|++..++++.... .+++.+.++.|+||++.+..+.+....|.++
T Consensus 139 v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC 218 (486)
T KOG3646|consen 139 VLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCC 218 (486)
T ss_pred eeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeeecccC
Confidence 468999999999999999999999999999999999999999986553 3467899999999999999999999989854
Q ss_pred --cceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-cccc
Q psy5854 80 --NFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKA 156 (392)
Q Consensus 80 --~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~ 156 (392)
.|..+.|.++++||..||-+++++|++++.++++++|-+|+|+ |||+++++|.+|+..+|+..+++..|++| .+|+
T Consensus 219 ~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPl 297 (486)
T KOG3646|consen 219 PEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPL 297 (486)
T ss_pred CCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccH
Confidence 5999999999999999999999999999999999999999998 99999999999999999999999999999 9999
Q ss_pred ccceeeeeeeccchhhhhc
Q psy5854 157 VDAFMSACTVSSTSLTFND 175 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~~ 175 (392)
++.|+..|+.+.+.++...
T Consensus 298 lg~fFsc~m~iv~~SvvfT 316 (486)
T KOG3646|consen 298 LGAFFSCCMFIVAASVVFT 316 (486)
T ss_pred HHHHHHHHHHHHHhhheeE
Confidence 9999999887655544443
No 7
>KOG3645|consensus
Probab=99.96 E-value=2.6e-29 Score=252.36 Aligned_cols=178 Identities=20% Similarity=0.368 Sum_probs=157.3
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEE-EeeCCCCC-ccccccccccceeEEeeeeeeeeeecC-
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLI-FQWDPEMP-LAVDEKIELPQLQLVKNKTADCSQVYS- 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~-~~~~~~~~-~~~~~~~~~~~w~l~~~~~~~~~~~~~- 77 (392)
++|..++.++++|++|+++||||.|+|.+.|+||.|+.+++. +....... .+.++..+++||++.+.........|.
T Consensus 142 V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~ 221 (449)
T KOG3645|consen 142 VLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDC 221 (449)
T ss_pred EEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeecccCC
Confidence 479999999999999999999999999999999999999776 44222221 677888999999999999988887774
Q ss_pred -CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccc-cc
Q psy5854 78 -TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSY-LK 155 (392)
Q Consensus 78 -~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~-~~ 155 (392)
.+.|+.+.+.+.+||++.||++++++||+++.+++.++||+|++..++|+++|++++|++++++..+++.+|++|. +|
T Consensus 222 ~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iP 301 (449)
T KOG3645|consen 222 CPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIP 301 (449)
T ss_pred CCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcch
Confidence 3459999999999999999999999999999999999999998885699999999999999999999999999995 99
Q ss_pred cccceeeeeeeccchhhhhcccc
Q psy5854 156 AVDAFMSACTVSSTSLTFNDILP 178 (392)
Q Consensus 156 ~i~~~l~~~l~~~~~~~~~~l~~ 178 (392)
+++.|+.++++..+.++...++-
T Consensus 302 Lig~y~~~~m~~~~~sv~~tv~i 324 (449)
T KOG3645|consen 302 LIGKYLLFTMVLVTISVVVTVVI 324 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHheeE
Confidence 99999999987766666555543
No 8
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.95 E-value=2.7e-28 Score=245.92 Aligned_cols=141 Identities=26% Similarity=0.413 Sum_probs=128.1
Q ss_pred hhhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhhh
Q psy5854 172 TFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWL 251 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~~ 251 (392)
...+|+++|+++||+.+||++.+.|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||++++++...+.. +.
T Consensus 30 ~~~~L~~~Ll~~Yd~~~RPv~~~~~v~V~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~-~~ 108 (459)
T TIGR00860 30 VERKLLDELLKNYDARVRPVFGGPPVTVSFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRT-PD 108 (459)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCEEEEEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccc-cc
Confidence 45689999999999999999888999999999999999999999999999999999999999999987665443332 27
Q ss_pred ccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 252 KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 252 ~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
++||+||++++|++++.++....++..+++++||+|.|.+|++++++|+||+.+||||...+
T Consensus 109 ~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C 170 (459)
T TIGR00860 109 DSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNC 170 (459)
T ss_pred cccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccc
Confidence 99999999999999999988888899999889999999999999999999999999976644
No 9
>KOG3645|consensus
Probab=99.93 E-value=1.9e-26 Score=231.67 Aligned_cols=139 Identities=17% Similarity=0.307 Sum_probs=124.0
Q ss_pred hhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhh
Q psy5854 172 TFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDW 250 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~ 250 (392)
...++..+++.+|++.+||+ +...+++|.+++.+.++++|||++|.+++++|+.++|+|+||+|||++++++-.+..+
T Consensus 29 ~~~~l~~~l~~~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp- 107 (449)
T KOG3645|consen 29 AEERLLVDLFDKYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVP- 107 (449)
T ss_pred HHHHHHHHHhhcccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEec-
Confidence 56778889999999999998 7777999999999999999999999999999999999999999999886655444432
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.++||+||+++||++++++.....++ +.+.++|+|.|.+|++++++|++|+.+||||...+
T Consensus 108 ~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C 168 (449)
T KOG3645|consen 108 SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNC 168 (449)
T ss_pred HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEEcceEEEeecccccccCCCcceeE
Confidence 89999999999999999998888777 66679999999999999999999999999975433
No 10
>KOG3643|consensus
Probab=99.93 E-value=2.3e-26 Score=219.40 Aligned_cols=142 Identities=26% Similarity=0.451 Sum_probs=135.2
Q ss_pred hhhhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhh
Q psy5854 171 LTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDW 250 (392)
Q Consensus 171 ~~~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~ 250 (392)
....++++.++.+||.+.||...++|+.|.+.+.+.+|..|+|.+|++|.+++++|+|+||||+|+ +...+.++++...
T Consensus 33 ~~~~~~ld~l~~~yd~~lRP~fGG~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~-~~~~~slTl~~~~ 111 (459)
T KOG3643|consen 33 QLVSSVLDRLLNGYDYRLRPNFGGPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS-SKNIDSLTLDVRY 111 (459)
T ss_pred hhHHHHHHHHhhcCceecCCCCCCCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccC-CCCCceEEEchhh
Confidence 457778899999999999999999999999999999999999999999999999999999999999 5566789999999
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.+++|+||+++-|++++-+|+++..|.++++.+||+|+|+.|++.+.+|+||+..||+|+..+
T Consensus 112 ~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C 174 (459)
T KOG3643|consen 112 VDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNC 174 (459)
T ss_pred hhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccce
Confidence 999999999999999999999999999999999999999999999999999999999998766
No 11
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.90 E-value=5.1e-24 Score=194.71 Aligned_cols=136 Identities=26% Similarity=0.423 Sum_probs=111.5
Q ss_pred hcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceeeehhh
Q psy5854 174 NDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLLEVDW 250 (392)
Q Consensus 174 ~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l~~~~ 250 (392)
.+|+++|+.+||+.+||. ..+.|+.|.+++.+.++.++||++|++++++|+++.|+|+||+||+.++++ .+.++
T Consensus 2 ~~l~~~L~~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~--- 78 (217)
T PF02931_consen 2 TRLLKSLFDNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP--- 78 (217)
T ss_dssp HHHHHHHHHTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEE---
T ss_pred hHHHHHHHhcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCccccccc---
Confidence 568889999999999998 788999999999999999999999999999999999999999999888554 45555
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.++||+||++++|+.++.. ........+.|.++|+|.|..++++++.|.|++.+||||...+
T Consensus 79 ~~~iW~P~l~~~n~~~~~~-~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C 140 (217)
T PF02931_consen 79 SSQIWTPDLYFYNSVSGSF-EITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNC 140 (217)
T ss_dssp GGGS----EEETTBSSSEE-ECS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEE
T ss_pred ccceEecccccccccccce-ecccccccccccccchheeeeccccccccccccccccccccee
Confidence 6799999999999555443 3334567899999999999999999999999999999997766
No 12
>KOG3642|consensus
Probab=99.88 E-value=6.1e-23 Score=197.25 Aligned_cols=142 Identities=29% Similarity=0.467 Sum_probs=131.2
Q ss_pred hhhhhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehh
Q psy5854 170 SLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVD 249 (392)
Q Consensus 170 ~~~~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~ 249 (392)
...+.++++.++++||++.||...++|+.|.+++++.++..|++.+|++++++.+||+|.|+||++|. ..+.+.+...
T Consensus 41 ~~~~T~iLn~lL~~YD~~lRP~~g~~pt~v~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~--~~~~L~Ln~~ 118 (466)
T KOG3642|consen 41 DTDVTLILNNLLRGYDNKLRPDIGSKPTEVETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNG--PQEALPLNSL 118 (466)
T ss_pred cchHHHHHHHHHHhhhcccCCCCCCCCcEEEEEEEEeecccccccCceEEEEEEEEEeehhhhhcccC--cchhhccchh
Confidence 35578899999999999999997779999999999999999999999999999999999999999992 2234777778
Q ss_pred hhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 250 WLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 250 ~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
..++||+||++++|++++..|..+.+|.+++|..||+|+|+.|.+..+.|+|.+.+||+|..++
T Consensus 119 m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haC 182 (466)
T KOG3642|consen 119 MLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHAC 182 (466)
T ss_pred hhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccC
Confidence 8999999999999999999999999999999999999999999999999999999999985444
No 13
>KOG3644|consensus
Probab=99.87 E-value=2.7e-22 Score=199.11 Aligned_cols=143 Identities=28% Similarity=0.484 Sum_probs=122.8
Q ss_pred hhhhcccccCccc-cCCCCCCCC-CCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccC-CC-CCccceee
Q psy5854 171 LTFNDILPEDPKL-YDKMRPPKK-EGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLP-EN-MTSEYRLL 246 (392)
Q Consensus 171 ~~~~~l~~~ll~~-yd~~~rP~~-~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~-~~-~~~~~~~l 246 (392)
....+++.+|+.+ ||+.+||.. .+.|+.|.+.+.++++.+++|.++++++++|++|+|+|+||+.+ .. +.......
T Consensus 38 ~~~~~il~~LL~~~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~ 117 (457)
T KOG3644|consen 38 TSDTDILDRLLGRNYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKL 117 (457)
T ss_pred cChHHHHHHHhhccCccccCCCccCCCceEEEEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCccccccccc
Confidence 4466778888887 999999984 48999999999999999999999999999999999999999998 33 22211111
Q ss_pred ehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 247 EVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 247 ~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.....++||.||+++.|++...+|..+.+|+++.|++||+|.++.|+..+.+|.||+.+||+|+-.+
T Consensus 118 ~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C 184 (457)
T KOG3644|consen 118 NLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQEC 184 (457)
T ss_pred ccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCcccee
Confidence 2112266999999999999999999999999999999999999999999999999999999976443
No 14
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.73 E-value=4.9e-21 Score=172.67 Aligned_cols=67 Identities=45% Similarity=0.867 Sum_probs=62.6
Q ss_pred eecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccccccccceeeeeeec
Q psy5854 101 TYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVS 167 (392)
Q Consensus 101 ~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~~~l~~~l~~ 167 (392)
+++||++++++||++||+|+++.+||+++|+|++|++++++..+++.||++||.+++|.++.+|+++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~ 67 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMF 67 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccch
Confidence 4799999999999999999999669999999999999999999999999999999999998888654
No 15
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.55 E-value=3.9e-14 Score=129.31 Aligned_cols=94 Identities=23% Similarity=0.520 Sum_probs=80.2
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCC-------CccccccccccceeEEeeeeeeee
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEM-------PLAVDEKIELPQLQLVKNKTADCS 73 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~w~l~~~~~~~~~ 73 (392)
+.|..++++++.|+||+++||||+|+|.|.|+||+|+.+++.+.|.... .........+++|++.+.......
T Consensus 114 V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~ 193 (217)
T PF02931_consen 114 VRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRE 193 (217)
T ss_dssp EEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEE
T ss_pred heeeecccccccccccccccccccceeEEEEecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEEEEEE
Confidence 4688999999999999999999999999999999999999999988642 445566788999999997776655
Q ss_pred eecC--CCc-ceEEEEEEEEEEec
Q psy5854 74 QVYS--TGN-FTCLEVIFVLKRRL 94 (392)
Q Consensus 74 ~~~~--~~~-ys~l~~~~~l~R~~ 94 (392)
..+. .+. |+++.++|+|+|+|
T Consensus 194 ~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 194 TTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EEESTSSSCSEEEEEEEEEEEEST
T ss_pred EccCCcCCCCEeeEEEEEEEEECc
Confidence 5443 334 99999999999986
No 16
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=84.70 E-value=0.27 Score=45.83 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=69.2
Q ss_pred eeecccCcceeEEe-EEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCCCcceEEEEEEEEEEe
Q psy5854 15 MNFMIYPHDTQECS-LQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRR 93 (392)
Q Consensus 15 mdl~~fPfD~Q~C~-l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~ 93 (392)
=+..+||||+-+-. +.+..+.-++.+-. ..+..+.-......|++.......+. ....+.++++|.
T Consensus 97 G~~~~yPFD~Y~~~~i~v~~~~g~~~~~~-----~~p~~v~~~~s~~gW~i~~~~~~~~~--------~~~~~~i~l~Rs 163 (256)
T PF14494_consen 97 GDINNYPFDRYRTDPIRVSAFVGNGDNRE-----PVPARVTLTGSLSGWDISATRVADAD--------GGDGVDITLKRS 163 (256)
T ss_pred CCccCCCCcccccceEEEEEEecCCCccc-----ccceEEEEEcccCCeEEEeeecCCCC--------CceeEEEEEEcc
Confidence 46789999998888 67766543332111 11222333334667887665433322 445688999999
Q ss_pred ceEEEEEeecceeheeeeeeEEEeecCCCc--ccceeeeehhhhhhh-hhhhcccccCCCcc-ccccccc
Q psy5854 94 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAA--PARVTLGVTSLLTLS-TQHAKSQASLPPVS-YLKAVDA 159 (392)
Q Consensus 94 ~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~--~~Rv~l~it~lL~~~-~~~~~~~~~LP~~s-~~~~i~~ 159 (392)
.+--.+.+++=.++ .+|+.+.++.-.... ..++.....+.++.+ .-+--+++.||-.+ .=..+|.
T Consensus 164 ~~~~~F~~~i~~vm-~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~ 232 (256)
T PF14494_consen 164 RGVLFFALFICLVM-WALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDF 232 (256)
T ss_pred CcceehHHHHHHHH-HHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceEee
Confidence 88766644443332 334444444422221 123333333333333 33344777888776 3334444
Done!