Query psy5854
Match_columns 392
No_of_seqs 322 out of 1759
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:46:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 2E-41 6.7E-46 329.9 1.3 172 1-172 118-291 (347)
2 3tlw_A GLR4197 protein, GLIC; 100.0 1.5E-38 5E-43 306.5 0.9 171 1-174 104-276 (321)
3 2bg9_E Acetylcholine receptor 100.0 7.7E-37 2.6E-41 299.7 -6.8 174 1-174 115-292 (370)
4 2bg9_A Acetylcholine receptor 100.0 4.2E-36 1.4E-40 294.5 -3.0 172 1-174 116-291 (370)
5 3rqw_A ELIC pentameric ligand 100.0 1.4E-35 4.8E-40 285.7 -2.3 172 1-175 100-280 (322)
6 2bg9_C Acetylcholine receptor 100.0 9E-36 3.1E-40 291.9 -5.0 169 1-174 118-290 (369)
7 2bg9_B Acetylcholine receptor 100.0 7.6E-36 2.6E-40 292.5 -5.6 172 1-174 116-288 (370)
8 4aq5_A Acetylcholine receptor 100.0 5.5E-35 1.9E-39 293.1 -2.7 174 1-176 140-317 (461)
9 4aq5_B Acetylcholine receptor 100.0 1.5E-34 5.3E-39 292.4 -5.1 174 1-176 140-323 (493)
10 4aq5_E Acetylcholine receptor 100.0 1.1E-34 3.7E-39 293.1 -7.7 176 1-176 115-301 (488)
11 4aq5_C Acetylcholine receptor 100.0 5.1E-34 1.8E-38 290.2 -5.3 175 1-176 139-328 (522)
12 4aoe_A Acetylcholine-binding p 100.0 1.4E-30 4.8E-35 233.7 11.2 139 172-317 4-152 (205)
13 2qc1_B Acetylcholine receptor 100.0 1.1E-30 3.8E-35 236.7 9.8 141 172-317 4-156 (212)
14 4aod_A Acetylcholine-binding p 100.0 1.4E-30 4.9E-35 233.9 10.0 141 172-318 4-153 (205)
15 3sq6_A ACHBP, neuronal acetylc 100.0 2.2E-30 7.6E-35 233.1 10.4 136 173-317 3-151 (204)
16 3rhw_A Avermectin-sensitive gl 100.0 4E-30 1.4E-34 250.1 10.7 144 173-316 2-156 (347)
17 1uw6_A Acetylcholine-binding p 100.0 4.1E-29 1.4E-33 226.2 10.6 139 173-317 4-150 (211)
18 4aq5_A Acetylcholine receptor 100.0 4.8E-29 1.6E-33 250.0 8.7 147 166-317 21-179 (461)
19 4aq5_C Acetylcholine receptor 100.0 1.1E-28 3.8E-33 251.0 9.6 146 168-318 20-179 (522)
20 2bg9_E Acetylcholine receptor 100.0 7.8E-29 2.7E-33 242.8 8.1 136 173-313 3-141 (370)
21 2bg9_C Acetylcholine receptor 99.9 1.4E-28 4.7E-33 240.9 8.2 134 172-310 3-141 (369)
22 2bg9_A Acetylcholine receptor 99.9 1.2E-28 4.2E-33 241.4 7.5 134 172-310 3-139 (370)
23 2wn9_A Soluble acetylcholine r 99.9 1.9E-28 6.4E-33 224.3 8.0 141 170-318 12-163 (228)
24 2bg9_B Acetylcholine receptor 99.9 1.3E-28 4.4E-33 241.2 7.0 137 172-313 3-142 (370)
25 4aq5_E Acetylcholine receptor 99.9 1E-28 3.5E-33 249.5 6.4 135 173-312 3-140 (488)
26 4afh_A ACHBP; acetylcholine-bi 99.9 4.8E-28 1.6E-32 221.3 9.7 143 171-318 4-160 (230)
27 4aq5_B Acetylcholine receptor 99.9 1.1E-28 3.7E-33 249.6 4.9 138 168-310 23-163 (493)
28 2bj0_A Acetylcholine-binding p 99.9 2.5E-27 8.6E-32 213.2 12.0 135 175-318 5-149 (203)
29 3igq_A GLR4197 protein; plgic 99.9 1.4E-27 4.8E-32 214.0 9.9 125 186-317 5-139 (201)
30 3tlw_A GLR4197 protein, GLIC; 99.9 1.5E-26 5.1E-31 222.6 10.9 128 183-316 6-142 (321)
31 3rqw_A ELIC pentameric ligand 99.9 6.2E-23 2.1E-27 197.4 10.3 116 194-316 9-138 (322)
32 2qc1_B Acetylcholine receptor 99.8 7.5E-19 2.6E-23 158.8 12.8 93 1-94 117-212 (212)
33 3igq_A GLR4197 protein; plgic 99.8 1.3E-18 4.6E-23 155.6 10.1 96 1-97 100-197 (201)
34 2lkg_A Acetylcholine receptor; 99.7 1.2E-22 4.2E-27 169.9 -18.7 102 71-173 23-128 (140)
35 3sq6_A ACHBP, neuronal acetylc 99.7 2.1E-17 7.2E-22 148.3 11.8 89 1-93 113-203 (204)
36 2ksr_A Neuronal acetylcholine 99.7 7E-21 2.4E-25 163.5 -12.4 96 78-174 12-108 (164)
37 4aod_A Acetylcholine-binding p 99.7 4.7E-17 1.6E-21 145.8 10.8 89 1-92 114-204 (205)
38 4aoe_A Acetylcholine-binding p 99.7 7.4E-17 2.5E-21 144.4 11.3 89 1-92 114-204 (205)
39 2wn9_A Soluble acetylcholine r 99.7 9.9E-17 3.4E-21 146.4 11.4 98 1-103 124-226 (228)
40 2bj0_A Acetylcholine-binding p 99.7 2.5E-16 8.6E-21 141.2 11.9 91 1-93 110-203 (203)
41 1uw6_A Acetylcholine-binding p 99.7 3.7E-16 1.3E-20 141.0 11.5 94 1-99 112-211 (211)
42 4afh_A ACHBP; acetylcholine-bi 99.6 7.7E-16 2.6E-20 140.4 10.6 94 1-101 125-221 (230)
43 2lly_A Neuronal acetylcholine 99.6 1E-18 3.6E-23 146.0 -11.1 86 89-175 2-88 (137)
44 1oed_E Acetylcholine receptor 99.3 2.5E-15 8.4E-20 138.7 -13.5 80 94-173 1-81 (260)
45 1oed_A Acetylcholine receptor 99.3 2.1E-15 7.2E-20 136.4 -14.6 81 94-175 1-82 (227)
46 1oed_B Acetylcholine receptor 99.3 3.3E-15 1.1E-19 137.1 -14.5 81 94-175 1-82 (250)
47 1oed_C Acetylcholine receptor 99.2 7.3E-15 2.5E-19 135.6 -14.9 81 94-175 1-82 (260)
48 1vry_A Glycine receptor alpha- 98.6 5.8E-10 2E-14 82.0 -5.2 47 124-170 2-48 (76)
49 1mot_A Glycine receptor alpha- 95.4 0.0017 5.8E-08 38.0 -0.9 27 124-150 2-28 (28)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2e-41 Score=329.88 Aligned_cols=172 Identities=42% Similarity=0.815 Sum_probs=160.2
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccc--cccccceeEEeeeeeeeeeecCC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDE--KIELPQLQLVKNKTADCSQVYST 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~~~~~~~ 78 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..++++...+ ...++||++.+.....+...+.+
T Consensus 118 V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 197 (347)
T 3rhw_A 118 VLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNT 197 (347)
T ss_dssp EEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSS
T ss_pred EEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEeeEeeeeecc
Confidence 4799999999999999999999999999999999999999999998766666555 67889999999988888888889
Q ss_pred CcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcccccccc
Q psy5854 79 GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVD 158 (392)
Q Consensus 79 ~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~ 158 (392)
|.|+++.+.+++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.||++||+|+||
T Consensus 198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id 277 (347)
T 3rhw_A 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAID 277 (347)
T ss_dssp CEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHH
T ss_pred cceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred ceeeeeeeccchhh
Q psy5854 159 AFMSACTVSSTSLT 172 (392)
Q Consensus 159 ~~l~~~l~~~~~~~ 172 (392)
.|+.+|+++...+.
T Consensus 278 ~~~~~~~~~v~~sl 291 (347)
T 3rhw_A 278 VWIGACMTFIFCAL 291 (347)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987654433
No 2
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=1.5e-38 Score=306.48 Aligned_cols=171 Identities=17% Similarity=0.267 Sum_probs=155.3
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeec--CC
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVY--ST 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~--~~ 78 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|. +++++.++..+++||++.+....++...+ .+
T Consensus 104 V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~-~~~~~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ 182 (321)
T 3tlw_A 104 VQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVD-LEKVGKNDDVFLTGWDIESFTAVVKPANFALED 182 (321)
T ss_dssp EEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEEC-GGGCEECTTCCBTTEEEEEEEEEEEEEEEEETT
T ss_pred EEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEc-CCcccccccccccceEEEeeEeEEeeEEecCCC
Confidence 4799999999999999999999999999999999999999999997 44567778889999999999887666555 56
Q ss_pred CcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcccccccc
Q psy5854 79 GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVD 158 (392)
Q Consensus 79 ~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~ 158 (392)
|.|+++.+++++||+++||++++++||+++++++|++|| |+++ ++|+++|+|++|++++++..+++.||++||+|++|
T Consensus 183 ~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~-~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~ 260 (321)
T 3tlw_A 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSY-EANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTG 260 (321)
T ss_dssp EEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHH
T ss_pred CceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCC-CCcEEEEhhHHHHHHHHHHHHHhhCCCccccHHHH
Confidence 789999999999999999999999999999999999999 6655 99999999999999999999999999999999999
Q ss_pred ceeeeeeeccchhhhh
Q psy5854 159 AFMSACTVSSTSLTFN 174 (392)
Q Consensus 159 ~~l~~~l~~~~~~~~~ 174 (392)
.|+.+|+++...+.+.
T Consensus 261 ~~~~~~~~~v~~sll~ 276 (321)
T 3tlw_A 261 AIIFMIYLFYFVAVIE 276 (321)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998765444433
No 3
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=7.7e-37 Score=299.70 Aligned_cols=174 Identities=16% Similarity=0.259 Sum_probs=158.1
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeee-cC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQV-YS-- 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~-~~-- 77 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+++++++.|..+++++.++...++||++.+....+.... |.
T Consensus 115 V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~ 194 (370)
T 2bg9_E 115 MYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKD 194 (370)
T ss_dssp EEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCCGGGSCCTTSSEEEEECCCCEECCCCTTCC
T ss_pred EEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcccHhhcccccEEEEecceeEEEEEecccCC
Confidence 469999999999999999999999999999999999999999999765456777778899999999887666554 54
Q ss_pred CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccc-ccc
Q psy5854 78 TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSY-LKA 156 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~-~~~ 156 (392)
+|.|+++.++|++||+++||++++++||++++++||++||+|++++++|+++|+|++|++++++..+++.||++|| +|+
T Consensus 195 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~ 274 (370)
T 2bg9_E 195 DIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL 274 (370)
T ss_dssp CSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCCh
Confidence 5789999999999999999999999999999999999999999977999999999999999999999999999997 999
Q ss_pred ccceeeeeeeccchhhhh
Q psy5854 157 VDAFMSACTVSSTSLTFN 174 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~ 174 (392)
||.|+.+|+++.+.+.+.
T Consensus 275 i~~~~~~~~~~v~~sll~ 292 (370)
T 2bg9_E 275 IGKYLIFVMFVSLVIVTN 292 (370)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998765554433
No 4
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4.2e-36 Score=294.50 Aligned_cols=172 Identities=14% Similarity=0.235 Sum_probs=157.5
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYST-- 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~-- 78 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|.. ++++..+...++||++.+....++...|.+
T Consensus 116 V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~ 194 (370)
T 2bg9_A 116 IMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES-DRPDLSTFMESGEWVMKDYRGWKHWVYYTCCP 194 (370)
T ss_dssp EEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCC-CCCSTTSCCTTCSSEEEEEEEEEEECCCSSSS
T ss_pred EEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecC-CCcccccccccceEEEEcceEEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999999864 456777888999999999988777777765
Q ss_pred -CcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccc-ccc
Q psy5854 79 -GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSY-LKA 156 (392)
Q Consensus 79 -~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~-~~~ 156 (392)
|.|+++.++|++||+++||++++++||++++++||++||+|+++ ++|+++|+|++|++++++..+++.||++|| +|+
T Consensus 195 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~ 273 (370)
T 2bg9_A 195 DTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL 273 (370)
T ss_dssp SCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCH
Confidence 67999999999999999999999999999999999999999998 899999999999999999999999999996 999
Q ss_pred ccceeeeeeeccchhhhh
Q psy5854 157 VDAFMSACTVSSTSLTFN 174 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~ 174 (392)
+|.|+.+|+++...+.+.
T Consensus 274 i~~~~~~~~~~v~~sl~~ 291 (370)
T 2bg9_A 274 IGKYMLFTMIFVISSIIV 291 (370)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998765554433
No 5
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=1.4e-35 Score=285.74 Aligned_cols=172 Identities=23% Similarity=0.342 Sum_probs=151.7
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeE-Eeeeee------eee
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQL-VKNKTA------DCS 73 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l-~~~~~~------~~~ 73 (392)
+.|.+|++++++|+||+++||||+|+|+++|+||+|+.+++++.|..+......+. +++||++ .+.... ++.
T Consensus 100 V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~-~~~ew~l~~~~~~~~~~~~y~~~ 178 (322)
T 3rqw_A 100 VIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHL 178 (322)
T ss_dssp EEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSSC-SSSSEEECCSCEECCEEEECTTS
T ss_pred EEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCCC-CCCceEEEeeeEEEeecccccee
Confidence 47999999999999999999999999999999999999999999964321122223 8899999 888776 555
Q ss_pred eecC--CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCc
Q psy5854 74 QVYS--TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPV 151 (392)
Q Consensus 74 ~~~~--~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~ 151 (392)
..|+ +|.|+++.+++++||+++||++++++|++++++++|++||+| + .++|+++|+|++|++++++..+++.||++
T Consensus 179 ~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~-~~~Rv~l~it~lL~~~~~~~~~~~~lP~~ 256 (322)
T 3rqw_A 179 SSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-S-FSERLQTSFTLMLTVVAYAFYTSNILPRL 256 (322)
T ss_dssp CCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-S-HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-C-CCCcEEEEEehHHHHHHHHHHHhhhCCCc
Confidence 5665 678999999999999999999999999999999999999999 4 59999999999999999999999999999
Q ss_pred cccccccceeeeeeeccchhhhhc
Q psy5854 152 SYLKAVDAFMSACTVSSTSLTFND 175 (392)
Q Consensus 152 s~~~~i~~~l~~~l~~~~~~~~~~ 175 (392)
||+|++|.|+.+|+++...+.+..
T Consensus 257 s~vp~i~~~~~~~~~~v~~sll~~ 280 (322)
T 3rqw_A 257 PYTTVIDQMIIAGYGSIFAAILLI 280 (322)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987655544333
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=9e-36 Score=291.91 Aligned_cols=169 Identities=15% Similarity=0.307 Sum_probs=153.7
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeee-cC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQV-YS-- 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~-~~-- 77 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+++++++.| +.+..+...++||++.+....+.... |+
T Consensus 118 V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~----~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~ 193 (369)
T 2bg9_C 118 VTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDL----IIDPEAFTENGEWEIIHKPAKKNIYGDKFPN 193 (369)
T ss_dssp EEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEEC----CCGGGSCCTTSSEEEEECCEEEEECCCSSCS
T ss_pred EEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEE----ecccccceeCCEEEEeeeeEEEEEEecCCCC
Confidence 479999999999999999999999999999999999999999998 34556677899999999887666655 65
Q ss_pred CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccc-ccc
Q psy5854 78 TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSY-LKA 156 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~-~~~ 156 (392)
+|.|+++.++|++||+++||++++++||++++++||++||+|++ +++|+++|+|++|++++++..+++.||++|| +|+
T Consensus 194 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~ 272 (369)
T 2bg9_C 194 GTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL 272 (369)
T ss_dssp SCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccH
Confidence 57899999999999999999999999999999999999999999 5999999999999999999999999999996 999
Q ss_pred ccceeeeeeeccchhhhh
Q psy5854 157 VDAFMSACTVSSTSLTFN 174 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~ 174 (392)
||.|+.+|+++.+.+.+.
T Consensus 273 i~~~~~~~~~~v~~sll~ 290 (369)
T 2bg9_C 273 IGKYLMFIMSLVTGVVVN 290 (369)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998866554433
No 7
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=7.6e-36 Score=292.55 Aligned_cols=172 Identities=17% Similarity=0.324 Sum_probs=155.0
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCCCc
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGN 80 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ 80 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..+++++..+...++||++.+....++ ....+|.
T Consensus 116 V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~-y~~~~~~ 194 (370)
T 2bg9_B 116 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSRKN-WRSDDPS 194 (370)
T ss_dssp EEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCCCCSTTSCCTTCSSEECCCCEEEC-CCTTSSS
T ss_pred EEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccCCccccccccccceEEEeccceEEe-ecCCCCC
Confidence 479999999999999999999999999999999999999999998445566777888999999998877555 2223678
Q ss_pred ceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccc-cccccc
Q psy5854 81 FTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSY-LKAVDA 159 (392)
Q Consensus 81 ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~-~~~i~~ 159 (392)
|+++.++|++||+++||++++++||++++++||++||+|++ +++|+++|+|++|++++++..+++.||++|| +|+||.
T Consensus 195 y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~ 273 (370)
T 2bg9_B 195 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIIS 273 (370)
T ss_dssp BCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSH
T ss_pred ccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHHH
Confidence 99999999999999999999999999999999999999999 5999999999999999999999999999997 999999
Q ss_pred eeeeeeeccchhhhh
Q psy5854 160 FMSACTVSSTSLTFN 174 (392)
Q Consensus 160 ~l~~~l~~~~~~~~~ 174 (392)
|+.+|+++.+.+.+.
T Consensus 274 ~~~~~~~~v~~sll~ 288 (370)
T 2bg9_B 274 YLMFIMILVAFSVIL 288 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998766554433
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.98 E-value=5.5e-35 Score=293.13 Aligned_cols=174 Identities=14% Similarity=0.240 Sum_probs=158.7
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYST-- 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~-- 78 (392)
++|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|. ++.++.++..+++||++.+....+....|.+
T Consensus 140 V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~-~~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~ 218 (461)
T 4aq5_A 140 IMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPE-SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCP 218 (461)
T ss_dssp EEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECC-CCCCSGGGCCTTCSSEEEEEEEEEEECCCSSSS
T ss_pred EEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEec-cccccHHhhhccCceEEeeeeeEEEEEeecCcC
Confidence 4799999999999999999999999999999999999999999976 4457777888999999999888777776654
Q ss_pred C-cceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-cccc
Q psy5854 79 G-NFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKA 156 (392)
Q Consensus 79 ~-~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~ 156 (392)
| .|+++.++|++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.||++| ++|+
T Consensus 219 ~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vpl 297 (461)
T 4aq5_A 219 DTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL 297 (461)
T ss_dssp SCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeehhHHHHHHHHHHHHHHHhhcCcccCCcCH
Confidence 5 8999999999999999999999999999999999999999998 69999999999999999999999999998 9999
Q ss_pred ccceeeeeeeccchhhhhcc
Q psy5854 157 VDAFMSACTVSSTSLTFNDI 176 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~~l 176 (392)
||.|+.+|+++.+.+.+..+
T Consensus 298 I~~y~~~~m~~v~~sll~tv 317 (461)
T 4aq5_A 298 IGKYMLFTMIFVISSIIVTV 317 (461)
T ss_dssp CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999987655554443
No 9
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.97 E-value=1.5e-34 Score=292.35 Aligned_cols=174 Identities=17% Similarity=0.329 Sum_probs=154.6
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCC---------CccccccccccceeEEeeeeee
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEM---------PLAVDEKIELPQLQLVKNKTAD 71 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~w~l~~~~~~~ 71 (392)
++|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..++ .++..+...++||++.+....+
T Consensus 140 V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~ 219 (493)
T 4aq5_B 140 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRK 219 (493)
T ss_dssp EEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEE
T ss_pred EEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEE
Confidence 4799999999999999999999999999999999999999999995332 2445566788999999887655
Q ss_pred eeeecCCCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCc
Q psy5854 72 CSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPV 151 (392)
Q Consensus 72 ~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~ 151 (392)
....|+ +.|+++.++|++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.||++
T Consensus 220 ~~~~~~-~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~t 297 (493)
T 4aq5_B 220 NWRSDD-PSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPET 297 (493)
T ss_dssp CCCTTS-SSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EeecCC-CCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCcc
Confidence 554444 48999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred cc-cccccceeeeeeeccchhhhhcc
Q psy5854 152 SY-LKAVDAFMSACTVSSTSLTFNDI 176 (392)
Q Consensus 152 s~-~~~i~~~l~~~l~~~~~~~~~~l 176 (392)
|+ +|+||.|+.+|+++.+.+.+..+
T Consensus 298 S~~vPlI~~y~~~~m~~v~lsll~tv 323 (493)
T 4aq5_B 298 SLSVPIIISYLMFIMILVAFSVILSV 323 (493)
T ss_dssp TTSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHhHHHHHHHHHHHHHHHHH
Confidence 97 99999999999987665554443
No 10
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.97 E-value=1.1e-34 Score=293.14 Aligned_cols=176 Identities=15% Similarity=0.254 Sum_probs=154.8
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCC-------ccccccccccceeEEeeeeeeee
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMP-------LAVDEKIELPQLQLVKNKTADCS 73 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~w~l~~~~~~~~~ 73 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..+++ ++.++...++||++.+....+..
T Consensus 115 V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~ 194 (488)
T 4aq5_E 115 MYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNY 194 (488)
T ss_dssp EEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCCEEEC
T ss_pred EEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEEEEEE
Confidence 47999999999999999999999999999999999999999999876432 33455678899999987665443
Q ss_pred ee-c--CCCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCC
Q psy5854 74 QV-Y--STGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPP 150 (392)
Q Consensus 74 ~~-~--~~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~ 150 (392)
.. + .++.|+++.++|++||+++||++++++||+++++++|++||+|++++++|+++|+|++|++++++..+++.||+
T Consensus 195 ~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~ 274 (488)
T 4aq5_E 195 NWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPE 274 (488)
T ss_dssp CCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCc
Confidence 32 3 24569999999999999999999999999999999999999999977999999999999999999999999999
Q ss_pred ccc-cccccceeeeeeeccchhhhhcc
Q psy5854 151 VSY-LKAVDAFMSACTVSSTSLTFNDI 176 (392)
Q Consensus 151 ~s~-~~~i~~~l~~~l~~~~~~~~~~l 176 (392)
+|+ +|+||.|+.+|+++.+.+.+..+
T Consensus 275 tS~~vPlI~~y~~~~m~lv~~Sll~tv 301 (488)
T 4aq5_E 275 TSLNVPLIGKYLIFVMFVSLVIVTNCV 301 (488)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 996 99999999999987666554443
No 11
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.97 E-value=5.1e-34 Score=290.21 Aligned_cols=175 Identities=15% Similarity=0.288 Sum_probs=151.5
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCC-----------ccccccccccceeEEeeee
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMP-----------LAVDEKIELPQLQLVKNKT 69 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~w~l~~~~~ 69 (392)
++|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..+++ ++.++..+++||++.+...
T Consensus 139 V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~ 218 (522)
T 4aq5_C 139 VTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPA 218 (522)
T ss_dssp EEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEECCE
T ss_pred EEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEE
Confidence 47999999999999999999999999999999999999999999875431 3344567899999998776
Q ss_pred eeeeee-c--CCCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccc
Q psy5854 70 ADCSQV-Y--STGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQA 146 (392)
Q Consensus 70 ~~~~~~-~--~~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~ 146 (392)
.+.... + .++.|+++.++|++||+++||++++++||+++++++|++||+|++ +++|+++|+|++|++++++..+++
T Consensus 219 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~ 297 (522)
T 4aq5_C 219 KKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQ 297 (522)
T ss_dssp EEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHh
Confidence 554432 3 345699999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred cCCCccc-cccccceeeeeeeccchhhhhcc
Q psy5854 147 SLPPVSY-LKAVDAFMSACTVSSTSLTFNDI 176 (392)
Q Consensus 147 ~LP~~s~-~~~i~~~l~~~l~~~~~~~~~~l 176 (392)
.||++|+ +|+||.|+.+|+++.+.+.+..+
T Consensus 298 ~LP~tS~~vPlI~~y~~~~m~lv~lSll~tv 328 (522)
T 4aq5_C 298 RLPETALAVPLIGKYLMFIMSLVTGVVVNCG 328 (522)
T ss_dssp HHHHHTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999996 99999999999987666554443
No 12
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.97 E-value=1.4e-30 Score=233.72 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=120.3
Q ss_pred hhhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCC-Cccceeeehhh
Q psy5854 172 TFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENM-TSEYRLLEVDW 250 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~-~~~~~~l~~~~ 250 (392)
...+|+++|+++|++..||+..++|+.|.+++.+.+|.+|||++|++++++|++|+|+|+||+||++. +.+.+.++
T Consensus 4 ~e~~L~~~Ll~~Yn~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~--- 80 (205)
T 4aoe_A 4 SREEIVKEILGRANPNNIPIVDEQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLP--- 80 (205)
T ss_dssp HHHHHHHHHHHTTCCSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE---
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeC---
Confidence 35679999999999999999668999999999999999999999999999999999999999999742 33455555
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKPP 317 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~~ 317 (392)
.++||+|||+++|+++.... ..+..+.|++||+|.|++|++++++|+|| .+|||| ||+|++..
T Consensus 81 ~~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~ 152 (205)
T 4aoe_A 81 SKYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRD 152 (205)
T ss_dssp GGGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTT
T ss_pred HHHhccccEEEecccccccc---ccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChhe
Confidence 78999999999999875432 35668899999999999999999999999 567765 78886654
No 13
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.96 E-value=1.1e-30 Score=236.69 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=125.3
Q ss_pred hhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceeeeh
Q psy5854 172 TFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLLEV 248 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l~~ 248 (392)
...+|+++|+++||+.+||+ +.+.|+.|.+++.+.+|.+|||++|++++++|++|.|+|+||+||++++++ .+.++
T Consensus 4 ~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~- 82 (212)
T 2qc1_B 4 HETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIP- 82 (212)
T ss_dssp HHHHHHHHHHTTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEEC-
T ss_pred HHHHHHHHHHHhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcc-
Confidence 46788999999999999998 668999999999999999999999999999999999999999999887544 45555
Q ss_pred hhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCCC
Q psy5854 249 DWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKPP 317 (392)
Q Consensus 249 ~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~~ 317 (392)
.++||+||++++|++++.++.... ..++|++||+|.|++|++++++|+||+.+|||| ||+|++..
T Consensus 83 --~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~ 156 (212)
T 2qc1_B 83 --SEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSA 156 (212)
T ss_dssp --GGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTT
T ss_pred --hhhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCce
Confidence 799999999999999999887654 468888999999999999999999999999986 56775553
No 14
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.96 E-value=1.4e-30 Score=233.94 Aligned_cols=141 Identities=14% Similarity=0.228 Sum_probs=121.7
Q ss_pred hhhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCC-Cccceeeehhh
Q psy5854 172 TFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENM-TSEYRLLEVDW 250 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~-~~~~~~l~~~~ 250 (392)
...+|+++|+++|++.+||+..++|+.|.+++.+.+|++|||++|++++++|++|+|+|+||+||++. +.+.+.++
T Consensus 4 ~~~~L~~dLl~~Y~~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~--- 80 (205)
T 4aod_A 4 SRSEILQDVLSRCSPLNIPIEDDQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTVP--- 80 (205)
T ss_dssp HHHHHHHHHHHTTCSSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE---
T ss_pred hHHHHHHHHHhcCCCcCCCCCCCccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeecc---
Confidence 35789999999999999999778999999999999999999999999999999999999999999632 33445555
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeec--------CCCCCCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVL--------GDSDLPKPPE 318 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpf--------d~~~~~~~~~ 318 (392)
.++||+||+++||++++.. ...+..+.|++||+|.|++|++++++|+||+.+||| +||+|++...
T Consensus 81 ~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfDQ~C~l~fgSw~y~~~~i 153 (205)
T 4aod_A 81 IAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETGVTCSLKSGSWTHSTQEL 153 (205)
T ss_dssp GGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSCEEEEEEEEESSCCTTTE
T ss_pred HHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCccccCCCCcEEEEEEECccccccEE
Confidence 7999999999999987543 345667899999999999999999999999877775 5788866643
No 15
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.96 E-value=2.2e-30 Score=233.09 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=120.9
Q ss_pred hhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceeeehhh
Q psy5854 173 FNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLLEVDW 250 (392)
Q Consensus 173 ~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l~~~~ 250 (392)
..+|+++|+++||+.+||+..+.|+.|.+++.+.+|.+|||++|++++++|++|.|+|+||+||++++++ .+.++
T Consensus 3 e~~L~~~Ll~~Yd~~~RP~~~~~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~--- 79 (204)
T 3sq6_A 3 QRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVP--- 79 (204)
T ss_dssp CCHHHHHHTTTCCTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEE---
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcC---
Confidence 4678899999999999999545999999999999999999999999999999999999999999887654 44555
Q ss_pred hccccCCccccccccc--cccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKA--VTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKPP 317 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~--~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~~ 317 (392)
.++||+||++++|+++ +.++.. .++|++||+|.|++|++++++|+||+ +|||| ||+|++..
T Consensus 80 ~~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~ 151 (204)
T 3sq6_A 80 ISSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRE 151 (204)
T ss_dssp GGGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTT
T ss_pred HHHCcCCCEEeEcccccCCccccc-----EEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeE
Confidence 7999999999999999 776642 78999999999999999999999999 99986 67776554
No 16
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.96 E-value=4e-30 Score=250.11 Aligned_cols=144 Identities=23% Similarity=0.359 Sum_probs=129.8
Q ss_pred hhcccccCc-cccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhh
Q psy5854 173 FNDILPEDP-KLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDW 250 (392)
Q Consensus 173 ~~~l~~~ll-~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~ 250 (392)
..+|+++|+ ++||+.+||+ +.++|+.|.+++.+.+|.++||++|++++++|++|+|+|+||+||++++++...+...+
T Consensus 2 ~~~L~~~Ll~~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~ 81 (347)
T 3rhw_A 2 DSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTV 81 (347)
T ss_dssp HHHHHHHHHHSCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCT
T ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecc
Confidence 357888999 9999999999 56799999999999999999999999999999999999999999988765444443334
Q ss_pred hccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCC
Q psy5854 251 LKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKP 316 (392)
Q Consensus 251 ~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~ 316 (392)
.++||+||++++|++++.++....+|..++|++||+|.|++|++++++|+||+.+|||| ||+|++.
T Consensus 82 ~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~ 156 (347)
T 3rhw_A 82 GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTK 156 (347)
T ss_dssp TCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTT
T ss_pred hhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChh
Confidence 69999999999999999999998999999999999999999999999999999999987 6777665
No 17
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.96 E-value=4.1e-29 Score=226.17 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=125.3
Q ss_pred hhcccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhhhc
Q psy5854 173 FNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLK 252 (392)
Q Consensus 173 ~~~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~~~ 252 (392)
..+|+++|+++||+.+||++.+.|+.|.+++.+.+|.+|||++|++++++|++|.|+|+||+||++++++.+.++ .+
T Consensus 4 ~~~ll~~Ll~~Yd~~~RP~~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~~l~~~---~~ 80 (211)
T 1uw6_A 4 RADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVP---IS 80 (211)
T ss_dssp HHHHHHHHHHHCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEEE---GG
T ss_pred HHHHHHHHHHcCCCcCCCCCCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCCeEEcc---HH
Confidence 456888889999999999987899999999999999999999999999999999999999999998866555665 79
Q ss_pred cccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEece---eE-----EeeeecCCCCCCCCC
Q psy5854 253 NMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME---YC-----LVNIVLGDSDLPKPP 317 (392)
Q Consensus 253 ~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~---~~-----~~~fpfd~~~~~~~~ 317 (392)
+||+||++++|++++. . .+.. ..++|++||+|.|++|++++++|+ || .|.+.|+||+|++..
T Consensus 81 ~iW~PDi~~~N~~~~~-~-~~~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~S~~y~~~~ 150 (211)
T 1uw6_A 81 SLWVPDLAAYNAISKP-E-VLTP-QLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSRE 150 (211)
T ss_dssp GSCCCCEEETTBCSCC-E-ECSC-CEEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTT
T ss_pred HccCCCEeeecccccc-c-ccee-eEEEEeCCceEEEeCCEEEEEECCCCCCCCCcceEeEEEEEcccccCce
Confidence 9999999999999988 3 3333 789999999999999999999999 87 489999999997764
No 18
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.95 E-value=4.8e-29 Score=250.03 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=128.5
Q ss_pred eccchhhhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCc--c
Q psy5854 166 VSSTSLTFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTS--E 242 (392)
Q Consensus 166 ~~~~~~~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~--~ 242 (392)
.+.+.....+|+++|+++||+.+||+ +.++|+.|.+++.+.++.+|||++|++++++|++|+|+|+||+||+++++ +
T Consensus 21 ~~~~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~ 100 (461)
T 4aq5_A 21 LVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIK 100 (461)
T ss_dssp ----CTTHHHHHHHHHHTCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHS
T ss_pred hhcCCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCcc
Confidence 34456678899999999999999999 66899999999999999999999999999999999999999999998755 4
Q ss_pred ceeeehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCC
Q psy5854 243 YRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDL 313 (392)
Q Consensus 243 ~~~l~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~ 313 (392)
.+.++ .++||+||++++|+++++++....+ .++|++||+|.|++|++++++|+||+.+|||| ||+|
T Consensus 101 ~l~vp---~~~IW~PDi~l~N~~d~~~~~~~~~--~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y 175 (461)
T 4aq5_A 101 KIRLP---SDDVWLPDLVLYNNADGDFAIVHMT--KLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 175 (461)
T ss_dssp SEEEE---GGGSCCCCEEESSCCCSCCTTCSSC--EEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSC
T ss_pred EEEec---CCCEECCceeeeccccccccccccc--ceEEcCCccEEEeccccccccccccccCCCCccCccCeEEecccc
Confidence 55655 7999999999999999999876544 46889999999999999999999999999997 5677
Q ss_pred CCCC
Q psy5854 314 PKPP 317 (392)
Q Consensus 314 ~~~~ 317 (392)
++..
T Consensus 176 ~~~~ 179 (461)
T 4aq5_A 176 DGTK 179 (461)
T ss_dssp CTTT
T ss_pred CCce
Confidence 6653
No 19
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.95 E-value=1.1e-28 Score=250.96 Aligned_cols=146 Identities=15% Similarity=0.227 Sum_probs=129.6
Q ss_pred cchhhhhcccccCc--cccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCc--c
Q psy5854 168 STSLTFNDILPEDP--KLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTS--E 242 (392)
Q Consensus 168 ~~~~~~~~l~~~ll--~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~--~ 242 (392)
.+.....+|+++|+ ++||+.+||+ +.+.|+.|.+++.+.+|.+|||++|++++++|++|+|+|+||+||+++++ +
T Consensus 20 ~~~~~e~rL~~~Ll~~~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~ 99 (522)
T 4aq5_C 20 SGVNEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDIS 99 (522)
T ss_dssp --CTTCTTTTTTSCSTTTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCS
T ss_pred ccCcHHHHHHHHhhcccCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCce
Confidence 45567899999999 9999999999 66899999999999999999999999999999999999999999988755 4
Q ss_pred ceeeehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCC
Q psy5854 243 YRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDL 313 (392)
Q Consensus 243 ~~~l~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~ 313 (392)
.+.++ .++||+||++++|++++.++....+|+ .|++||+|.|++|++++++|+||+.+|||| ||+|
T Consensus 100 ~l~vp---~~~IW~PDi~l~N~~d~~~~~~~~~nv--~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y 174 (522)
T 4aq5_C 100 ILRLR---PELIWIPDIVLQNNNDGQYNVAYFCNV--LVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174 (522)
T ss_dssp CEEEC---GGGSCCCCEEETTTCSSCCBSCSSCCE--EECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTC
T ss_pred EEeec---cCCEECCcEeccccccCCccccccceE--EEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccc
Confidence 45555 799999999999999999988877775 478999999999999999999999999997 5677
Q ss_pred CCCCC
Q psy5854 314 PKPPE 318 (392)
Q Consensus 314 ~~~~~ 318 (392)
++...
T Consensus 175 ~~~~v 179 (522)
T 4aq5_C 175 NANEI 179 (522)
T ss_dssp CTTTC
T ss_pred cCcee
Confidence 66643
No 20
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=7.8e-29 Score=242.82 Aligned_cols=136 Identities=15% Similarity=0.254 Sum_probs=122.4
Q ss_pred hhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceeeehh
Q psy5854 173 FNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLLEVD 249 (392)
Q Consensus 173 ~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l~~~ 249 (392)
..+|+++|+++||+.+||+ +.++|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||++++++ .+.++
T Consensus 3 e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~-- 80 (370)
T 2bg9_E 3 EGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP-- 80 (370)
T ss_dssp HHHHHHHHHHHCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCC--
T ss_pred HHHHHHHHHhccCCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeec--
Confidence 4678889999999999998 669999999999999999999999999999999999999999999987654 44444
Q ss_pred hhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 250 WLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 250 ~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.++||+||++++|+++++++....+|+ .|++||+|.|++|++++++|+||+.+||||...+
T Consensus 81 -~~~IW~PDi~~~N~~~~~~~~~~~~~~--~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C 141 (370)
T 2bg9_E 81 -SELLWLPDVVLENNVDGQFEVAYYANV--LVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNC 141 (370)
T ss_dssp -GGGSCCCCEEESSSCCSCCBSSSSCCC--EECSSSEEEECCEEEEEECCCCSSCSSSSSCCBC
T ss_pred -hhccCCCCEeeccccCCcccccccccE--EEECCccEEEecCEEEEEECcccccCCCCCeEEE
Confidence 799999999999999999988777775 4789999999999999999999999999986443
No 21
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=1.4e-28 Score=240.93 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=121.4
Q ss_pred hhhcccccCcc--ccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceee
Q psy5854 172 TFNDILPEDPK--LYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLL 246 (392)
Q Consensus 172 ~~~~l~~~ll~--~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l 246 (392)
...+|+++|++ +||+.+||+ +.++|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||++++++ .+.+
T Consensus 3 ~~~~L~~~Ll~~~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v 82 (369)
T 2bg9_C 3 EEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL 82 (369)
T ss_dssp SHHHHHHHHTTTTTSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEE
T ss_pred hHHHHHHHHhcccCCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEe
Confidence 35678889999 999999998 668999999999999999999999999999999999999999999887554 4555
Q ss_pred ehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCC
Q psy5854 247 EVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGD 310 (392)
Q Consensus 247 ~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~ 310 (392)
+ .++||+||++++|+++++++....+|+ .|++||+|.|++|++++++|+||+.+||||.
T Consensus 83 ~---~~~IW~PDi~~~N~~~~~~~~~~~~~~--~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~ 141 (369)
T 2bg9_C 83 R---PELIWIPDIVLQNNNDGQYNVAYFCNV--LVRPNGYVTWLPPAIFRSSCPINVLYFPFDW 141 (369)
T ss_dssp C---GGGSCCCCEEETTTCSSCCBSSSSCCE--EECSSSEEEECCEEEEEECCSCGGGSSSTTC
T ss_pred c---HHhccCCcEeccccccccccccccccE--EEECCccEEEecCEEEEEECcCcccCCCCCc
Confidence 5 799999999999999999988766664 5789999999999999999999999999986
No 22
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=1.2e-28 Score=241.44 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=121.8
Q ss_pred hhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCc--cceeeeh
Q psy5854 172 TFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTS--EYRLLEV 248 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~--~~~~l~~ 248 (392)
...+|+++|+++||+.+||+ +.++|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||+++++ +.+.++
T Consensus 3 ~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~- 81 (370)
T 2bg9_A 3 HETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP- 81 (370)
T ss_dssp THHHHHHHHHHSCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEE-
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEec-
Confidence 35678899999999999998 66999999999999999999999999999999999999999999998754 445555
Q ss_pred hhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCC
Q psy5854 249 DWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGD 310 (392)
Q Consensus 249 ~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~ 310 (392)
.++||+||++++|+++++++... +..++|++||+|.|++|++++++|+||+.+||||.
T Consensus 82 --~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~ 139 (370)
T 2bg9_A 82 --SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQ 139 (370)
T ss_dssp --GGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSC
T ss_pred --hhhccCCcEeccccccccccccc--cceEEEECCeeEEEecceEEEEECCCCcCCCCCCc
Confidence 89999999999999999888754 45788999999999999999999999999999975
No 23
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.95 E-value=1.9e-28 Score=224.27 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=127.1
Q ss_pred hhhhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceee
Q psy5854 170 SLTFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLL 246 (392)
Q Consensus 170 ~~~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l 246 (392)
.....+|+++|+++||+. |+ +.+.|+.|.+++.+.+|.+|||++|++++++|++|+|+|+||+||++++++ .+.+
T Consensus 12 ~~~~~~L~~~Ll~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~ 89 (228)
T 2wn9_A 12 QANLMRLKSDLFNRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRT 89 (228)
T ss_dssp HHHHHHHHHHHHTSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEE
T ss_pred CcHHHHHHHHHHhhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEe
Confidence 456788999999999999 76 679999999999999999999999999999999999999999999887554 4555
Q ss_pred ehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEece---eEE-----eeeecCCCCCCCCCC
Q psy5854 247 EVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME---YCL-----VNIVLGDSDLPKPPE 318 (392)
Q Consensus 247 ~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~---~~~-----~~fpfd~~~~~~~~~ 318 (392)
+ .++||+||++++|++++.++.. +..++|++||+|.|++|++++++|+ ||+ |.+.|+||+|++...
T Consensus 90 ~---~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~Sw~y~~~~i 163 (228)
T 2wn9_A 90 S---AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEI 163 (228)
T ss_dssp E---GGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTTTTSTTCEEEEEEEEESSCCTTTE
T ss_pred c---HHHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCCCCCCcCcEeeEEEEeecccccEE
Confidence 5 7999999999999999998764 7889999999999999999999999 874 999999999977643
No 24
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=1.3e-28 Score=241.19 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=123.0
Q ss_pred hhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCcc--ceeeeh
Q psy5854 172 TFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE--YRLLEV 248 (392)
Q Consensus 172 ~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~--~~~l~~ 248 (392)
...+|+++|+++||+.+||+ +.++|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||++++++ .+.++
T Consensus 3 ~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~- 81 (370)
T 2bg9_B 3 MEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP- 81 (370)
T ss_dssp THHHHHHHHHHHCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEE-
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEec-
Confidence 35678899999999999998 668999999999999999999999999999999999999999999887654 45555
Q ss_pred hhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCCC
Q psy5854 249 DWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDL 313 (392)
Q Consensus 249 ~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~~ 313 (392)
.++||+||++++|+++++++....++ +.|++||+|.|++|++++++|+||+.+||||...+
T Consensus 82 --~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C 142 (370)
T 2bg9_B 82 --SDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNC 142 (370)
T ss_dssp --SSSSCCCCEEESSCCCSCEESSSSCE--EEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCC
T ss_pred --hhhccCCCccccccccccccccccce--EEEeCCceEEEEecceEEEEccCcccCCCCCceee
Confidence 79999999999999999988776655 46789999999999999999999999999987544
No 25
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.95 E-value=1e-28 Score=249.49 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=122.5
Q ss_pred hhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccc--eeeehh
Q psy5854 173 FNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEY--RLLEVD 249 (392)
Q Consensus 173 ~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~--~~l~~~ 249 (392)
..+|+++|+++||+.+||+ +.+.|+.|.+++.+.+|.+|||++|++++++|++|+|+|+||+||++++++. +.++
T Consensus 3 e~rL~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~-- 80 (488)
T 4aq5_E 3 EGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP-- 80 (488)
T ss_dssp HHHHHHHHHHHCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCC--
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecC--
Confidence 5678999999999999999 6689999999999999999999999999999999999999999998876544 4444
Q ss_pred hhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCCCC
Q psy5854 250 WLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSD 312 (392)
Q Consensus 250 ~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~~~ 312 (392)
.++||+||++++|+++++++....+|+. |++||+|.|++|++++++|+||+.+||||...
T Consensus 81 -~~~IW~PDi~l~N~~d~~~~~~~~~nv~--v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~ 140 (488)
T 4aq5_E 81 -SELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQN 140 (488)
T ss_dssp -TTSSCCCCEECSSSCCSCCBSCSSSCCC--BCTTSEEEECCEEBCEECCCCSSSSSSSSCCC
T ss_pred -ccCEECCceehhccccccccccccccEE--EeCCceEEEecceeEEeecccccccCCCcCce
Confidence 7999999999999999999988777764 77999999999999999999999999997543
No 26
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.95 E-value=4.8e-28 Score=221.33 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=124.0
Q ss_pred hhhhcccccCccccCCCCC---CC-CCCCCEEEEEEEEEeeecccccc----cceEEeeeeeeccccccccccCCCCCcc
Q psy5854 171 LTFNDILPEDPKLYDKMRP---PK-KEGQPTIVYFHVTVMGLDSIDEN----SMTYAADIFFAQTWKDHRLRLPENMTSE 242 (392)
Q Consensus 171 ~~~~~l~~~ll~~yd~~~r---P~-~~~~pv~V~~~~~l~~i~~vde~----~q~~~~~~w~~~~W~D~~L~w~~~~~~~ 242 (392)
....+|+++|+++||+.+| |+ +.+.|+.|.+++.+.+|.+|||+ +|++++++|++|+|+|+||+||++++++
T Consensus 4 ~~e~~L~~~Ll~~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~ 83 (230)
T 4afh_A 4 LMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFD 83 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSC
T ss_pred hHHHHHHHHHHhhcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCC
Confidence 3567899999999999999 99 66899999999999999999999 9999999999999999999999887654
Q ss_pred --ceeeehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEecee--E--EeeeecCCCCCCCC
Q psy5854 243 --YRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEY--C--LVNIVLGDSDLPKP 316 (392)
Q Consensus 243 --~~~l~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~--~--~~~fpfd~~~~~~~ 316 (392)
.+.++ .++||+||++++|++++.++.... ..+.|++||+|.|++|++++++|+| | .|.+.|+||.|++.
T Consensus 84 i~~i~l~---~~~IW~PDi~l~N~~~~~~~~~~~--~~v~v~~~G~V~~~~~~~~~s~C~mPfD~Q~C~l~f~S~~y~~~ 158 (230)
T 4afh_A 84 FQKIEIS---PDEIWTPDIKLFNSVDLDMTLDRT--TQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVD 158 (230)
T ss_dssp CSEEEEC---GGGSCCCCEEETTCSSSSCEECTT--SCEEEETTSEEEECCEEEEEEEEEEETTEEEEEEEEEESSCCTT
T ss_pred eeEEEec---cCCEECCcEEEEeccccccccccc--ceEEEEcCCEEEEecCEEEEEECCCCCCcccCCEeeccccccCc
Confidence 45554 799999999999999999876543 4578889999999999999999976 2 46666678999766
Q ss_pred CC
Q psy5854 317 PE 318 (392)
Q Consensus 317 ~~ 318 (392)
..
T Consensus 159 ~v 160 (230)
T 4afh_A 159 EV 160 (230)
T ss_dssp TE
T ss_pred eE
Confidence 43
No 27
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.95 E-value=1.1e-28 Score=249.56 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=124.0
Q ss_pred cchhhhhcccccCccccCCCCCCC-CCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCC--ccce
Q psy5854 168 STSLTFNDILPEDPKLYDKMRPPK-KEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMT--SEYR 244 (392)
Q Consensus 168 ~~~~~~~~l~~~ll~~yd~~~rP~-~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~--~~~~ 244 (392)
.+.....+|+++|+++||+.+||+ +.+.|+.|.+++.+.+|.+|||++|++++++|++|+|+|+||+||++++ .+.+
T Consensus 23 ~~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l 102 (493)
T 4aq5_B 23 GASVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDL 102 (493)
T ss_dssp --CTTHHHHHHHHHHHCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCE
T ss_pred cCCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEE
Confidence 455678899999999999999999 6699999999999999999999999999999999999999999998764 4455
Q ss_pred eeehhhhccccCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecCC
Q psy5854 245 LLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGD 310 (392)
Q Consensus 245 ~l~~~~~~~iW~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd~ 310 (392)
.++ .++||+||++++|+++++++....+|+ .|++||+|.|++|++++++|+||+.+||||.
T Consensus 103 ~v~---~~~IW~PDi~l~N~~d~~~~~~~~~nv--~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~ 163 (493)
T 4aq5_B 103 SIP---SDDVWQPDIVLMNNNDGSFEITLHVNV--LVQHTGAVSWHPSAIYRSSCTIKVMYFPFDW 163 (493)
T ss_dssp EEC---SCSSCCCCCEESSCCCSCEESSSSSCE--EECTTSEEEECCEEEEEECCSCTTCSSSTTC
T ss_pred ecc---cccCccCcEEEecccccccccccccce--EEecCCCEEEeeeeeeeecccccccCCCccc
Confidence 555 799999999999999999988777764 5789999999999999999999999999974
No 28
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.94 E-value=2.5e-27 Score=213.16 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=120.2
Q ss_pred cccccCccccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeecccccccc-ccCCCCCccceeeehhhhcc
Q psy5854 175 DILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRL-RLPENMTSEYRLLEVDWLKN 253 (392)
Q Consensus 175 ~l~~~ll~~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L-~w~~~~~~~~~~l~~~~~~~ 253 (392)
++++.++ ||+.+||+..+.|+.|.+++.+.+|.++||++|++++++|++|.|+|+|| +||++++.+.+.++ .++
T Consensus 5 ~ll~~l~--~d~~~RP~~~~~p~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~~---~~~ 79 (203)
T 2bj0_A 5 TLLNQIT--GESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLP---VSK 79 (203)
T ss_dssp HHHHHHH--HTTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEEE---GGG
T ss_pred HHHHHHh--cCCccCCCCCCCCEEEEEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccCCceEEEEc---hhh
Confidence 4455554 59999998888999999999999999999999999999999999999999 99988765666666 799
Q ss_pred ccCCccccccc-cccccccccccceEEEEecCcEEEEEecEEEEEecee-E-------EeeeecCCCCCCCCCC
Q psy5854 254 MWRPDSFFKNA-KAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEY-C-------LVNIVLGDSDLPKPPE 318 (392)
Q Consensus 254 iW~PDi~l~N~-~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~-~-------~~~fpfd~~~~~~~~~ 318 (392)
||+||++++|+ +++.++.. ..++|++||+|.|++|++++++|+| | .|.+.|+||+|++...
T Consensus 80 iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~fD~Q~C~l~f~S~~y~~~~v 149 (203)
T 2bj0_A 80 MWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPGATCRIKVGSWTHDNKQF 149 (203)
T ss_dssp SCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTTE
T ss_pred ccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEccccccCccccceeeEEEEcccccCcEE
Confidence 99999999999 99988866 6788999999999999999999999 5 5788899999976643
No 29
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.94 E-value=1.4e-27 Score=214.03 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=104.5
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCC-CccceeeehhhhccccCCccccccc
Q psy5854 186 KMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENM-TSEYRLLEVDWLKNMWRPDSFFKNA 264 (392)
Q Consensus 186 ~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~-~~~~~~l~~~~~~~iW~PDi~l~N~ 264 (392)
+++||++.+.|+.|.+++.+.+|.+|||++|++++++|++|.|+|+||+||+++ +...+.+ +.++||+||++++|+
T Consensus 5 ~~~RP~~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~---~~~~IW~PDi~l~N~ 81 (201)
T 3igq_A 5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY---EPEAIWIPEIRFVNV 81 (201)
T ss_dssp CSCCCCBTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEEC---CGGGSCCCCEEESSB
T ss_pred cccCCCCCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEecc---cccCcCccCEEEEcc
Confidence 578999889999999999999999999999999999999999999999999766 3333333 489999999999999
Q ss_pred cccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCCC
Q psy5854 265 KAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKPP 317 (392)
Q Consensus 265 ~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~~ 317 (392)
++... ..+..++|++||+|.|++|++++++|+||+.+|||| ||.|++..
T Consensus 82 ~~~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~ 139 (201)
T 3igq_A 82 ENARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRN 139 (201)
T ss_dssp SSSCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCC
T ss_pred ccccc----ccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceE
Confidence 87542 457889999999999999999999999999999986 67786664
No 30
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.93 E-value=1.5e-26 Score=222.60 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=112.9
Q ss_pred ccCCCCCCCCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhhhccccCCccccc
Q psy5854 183 LYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFK 262 (392)
Q Consensus 183 ~yd~~~rP~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~~~~iW~PDi~l~ 262 (392)
.+|++.||++.++|+.|.+++.+.++.++||++|++++++|++|+|+|+||+||+++++ +.....+.++||+||++++
T Consensus 6 q~d~~~RP~~~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~--i~~~~~~~~~IW~PDi~l~ 83 (321)
T 3tlw_A 6 QDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG--VRVKTYEPEAIWIPEIRFV 83 (321)
T ss_dssp ---CCCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC--CSSEECCGGGSCCCCEEES
T ss_pred cCCCccCCCCCCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC--eeeecccccCeEcCcEEee
Confidence 57899999989999999999999999999999999999999999999999999988765 3333345899999999999
Q ss_pred cccccccccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCC
Q psy5854 263 NAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKP 316 (392)
Q Consensus 263 N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~ 316 (392)
|++++. ...+..++|++||+|.|++|++++++|+||+.+|||| ||.|+++
T Consensus 84 N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~ 142 (321)
T 3tlw_A 84 NVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTR 142 (321)
T ss_dssp SBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSC
T ss_pred cccccc----cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChh
Confidence 999987 4567889999999999999999999999999999997 5666655
No 31
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.88 E-value=6.2e-23 Score=197.41 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=101.5
Q ss_pred CCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeeh-----hhhccccCCccccccccccc
Q psy5854 194 GQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEV-----DWLKNMWRPDSFFKNAKAVT 268 (392)
Q Consensus 194 ~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~-----~~~~~iW~PDi~l~N~~~~~ 268 (392)
++|+.|.+++.+.+|.++||++|++++++|++|+|+|+||+|+ +.+.+.++. .+.++||+||++++|++++.
T Consensus 9 ~~pv~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~---~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~ 85 (322)
T 3rqw_A 9 ARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP---GDKPLIVENTQIERWINNGLWVPALEFINVVGSP 85 (322)
T ss_dssp --CEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCS---TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCC
T ss_pred CCCEEEEEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCC---CCCceeecchhhcccccccccCCcEEEEcccCcc
Confidence 4599999999999999999999999999999999999999994 344555542 23899999999999999998
Q ss_pred cccccccceEEEEecCcEEEEEecEEEEEeceeEEeeeecC---------CCCCCCC
Q psy5854 269 FQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG---------DSDLPKP 316 (392)
Q Consensus 269 ~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~~~~fpfd---------~~~~~~~ 316 (392)
+ ..+..+++++||+|.|++|++++++|+||+.+|||| ||+|+++
T Consensus 86 ~----~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~ 138 (322)
T 3rqw_A 86 D----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQ 138 (322)
T ss_dssp E----EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSE
T ss_pred c----ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcc
Confidence 7 567889999999999999999999999999999997 5677554
No 32
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.78 E-value=7.5e-19 Score=158.80 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=85.6
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYST-- 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~-- 78 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+++++++.|..+ +++..+...++||++.+....++...|++
T Consensus 117 V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~ 195 (212)
T 2qc1_B 117 ITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESD-QPDLSNFMESGEWVIKEARGWKHWVFYSCCP 195 (212)
T ss_dssp EEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCS-SCBCTTCCCCSSEEEEEEEEEEEEEEETTCS
T ss_pred EEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEeccc-ccchhhCccCCCEEEEEeEEEEEEEecCCCC
Confidence 478999999999999999999999999999999999999999999754 57778888999999999999888888876
Q ss_pred -CcceEEEEEEEEEEec
Q psy5854 79 -GNFTCLEVIFVLKRRL 94 (392)
Q Consensus 79 -~~ys~l~~~~~l~R~~ 94 (392)
|.|+++.++|+|||+|
T Consensus 196 ~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 196 TTPYLDITYHFVMQRLP 212 (212)
T ss_dssp SCCEEEEEEEEEEEECC
T ss_pred CCCeeEEEEEEEEEECc
Confidence 7799999999999986
No 33
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.76 E-value=1.3e-18 Score=155.61 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=74.4
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCCC-
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTG- 79 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~- 79 (392)
+.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|.. ++++.++..+++||++.+....+....|.++
T Consensus 100 V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~y~cc~ 178 (201)
T 3igq_A 100 VQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDVFLTGWDIESFTAVVKPANFALED 178 (201)
T ss_dssp EEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG-GGCEESCSEEETTEEEEEEEEEEEC-------
T ss_pred EEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC-CccccccCcccCCeEEEeeEEEEEEEEeCCCC
Confidence 47999999999999999999999999999999999999999999974 4677788899999999999998888888754
Q ss_pred -cceEEEEEEEEEEeceEE
Q psy5854 80 -NFTCLEVIFVLKRRLGYY 97 (392)
Q Consensus 80 -~ys~l~~~~~l~R~~~~y 97 (392)
.|+.+.|.+.+||+.+.+
T Consensus 179 ~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 179 RLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp -CCCEEEEEEEEEEC----
T ss_pred CccCeEEEEEEEEECCCCC
Confidence 599999999999998865
No 34
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.74 E-value=1.2e-22 Score=169.85 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=93.1
Q ss_pred eeeeec---CCCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhccccc
Q psy5854 71 DCSQVY---STGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQAS 147 (392)
Q Consensus 71 ~~~~~~---~~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~ 147 (392)
.|...| ++|.|+++.++|.+||+++||++++++||+++++++|++||+|+|+ |||+++|++++|++++++..+++.
T Consensus 23 cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~ 101 (140)
T 2lkg_A 23 ICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVEL 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHh
Confidence 344555 5788999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred CCCcc-ccccccceeeeeeeccchhhh
Q psy5854 148 LPPVS-YLKAVDAFMSACTVSSTSLTF 173 (392)
Q Consensus 148 LP~~s-~~~~i~~~l~~~l~~~~~~~~ 173 (392)
+|++| ++|++|.|+.+|+++.+.+..
T Consensus 102 lP~tS~~vPlI~~y~~~~~~~v~~sll 128 (140)
T 2lkg_A 102 IPSTSSAVPLIGKYMLFTKEFVESSIK 128 (140)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999876655443
No 35
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.72 E-value=2.1e-17 Score=148.29 Aligned_cols=89 Identities=13% Similarity=0.294 Sum_probs=81.1
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecC--C
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYS--T 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~--~ 78 (392)
+.|.+|++++++|+||+ +||||+|+|+|+|+||+|+++++.+.|. .++.++..+++||++.+....+....|. +
T Consensus 113 V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~---~~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~ 188 (204)
T 3sq6_A 113 VQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQ---EADISGYIPYSRFELVGVTQKRSERFYECCK 188 (204)
T ss_dssp EEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECC---CCCCTTSCSSSSEEEEEEEEEEEEEECSSSS
T ss_pred EEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEec---cCCHHHcccCCCEEEEEeEEEEEEEeeCCCC
Confidence 47899999999999999 9999999999999999999999999975 3456677899999999999988888887 5
Q ss_pred CcceEEEEEEEEEEe
Q psy5854 79 GNFTCLEVIFVLKRR 93 (392)
Q Consensus 79 ~~ys~l~~~~~l~R~ 93 (392)
|.|+.+.++|+|||+
T Consensus 189 ~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 189 EPYPDVTFTVTFRKK 203 (204)
T ss_dssp SEEEEEEEEEEEEEC
T ss_pred CCcceEEEEEEEEEC
Confidence 779999999999997
No 36
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.71 E-value=7e-21 Score=163.45 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=77.9
Q ss_pred CCcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-cccc
Q psy5854 78 TGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKA 156 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~ 156 (392)
.+.|+++.+++.+||+++||++++++||+++++++|++||+|+|+ |||+++|++++|++++++..+++.+|++| ++|+
T Consensus 12 ~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPl 90 (164)
T 2ksr_A 12 DLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPL 90 (164)
T ss_dssp -------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHH
T ss_pred CCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCH
Confidence 457999999999999999999999999999999999999999998 99999999999999999999999999998 9999
Q ss_pred ccceeeeeeeccchhhhh
Q psy5854 157 VDAFMSACTVSSTSLTFN 174 (392)
Q Consensus 157 i~~~l~~~l~~~~~~~~~ 174 (392)
+|.|+.+|++..+.+...
T Consensus 91 I~~y~~~~m~~v~~sll~ 108 (164)
T 2ksr_A 91 VGKYLMFTMVLVTFSIVT 108 (164)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998765554433
No 37
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.70 E-value=4.7e-17 Score=145.84 Aligned_cols=89 Identities=18% Similarity=0.342 Sum_probs=81.3
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYST-- 78 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~-- 78 (392)
+.|.+|++++++|+||+++|||| |+|.|+||||+|+++++.+.|.. .++.++..+++||++.+....+....|++
T Consensus 114 V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~--~~dl~~~~~n~EW~l~~~~~~~~~~~Y~cc~ 190 (205)
T 4aod_A 114 VTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA--KVDLGDYASDTRFQLLNATQQVNRKQYPCCP 190 (205)
T ss_dssp EEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS--SCBCTTSCTTCSSEEEEEEEEEEEEEETTEE
T ss_pred EEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC--CcccccccccCCEEEEeeEEEEEEEEeCCCC
Confidence 47999999999999999999999 99999999999999999999854 46678889999999999999998888985
Q ss_pred CcceEEEEEEEEEE
Q psy5854 79 GNFTCLEVIFVLKR 92 (392)
Q Consensus 79 ~~ys~l~~~~~l~R 92 (392)
+.|+.+.++|+|||
T Consensus 191 ~~Y~~it~~~~lrR 204 (205)
T 4aod_A 191 ETYEDTTLSFTFRK 204 (205)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred CCcceEEEEEEEEC
Confidence 45999999999976
No 38
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.69 E-value=7.4e-17 Score=144.45 Aligned_cols=89 Identities=18% Similarity=0.326 Sum_probs=81.0
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecCCC-
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTG- 79 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~- 79 (392)
++|.+|++++++|+|| .+||||+|+|.|+||||+|+++++.+.+ .+.++.+++.+++||++.+....+....|+++
T Consensus 114 V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~--~~~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~ 190 (205)
T 4aoe_A 114 VTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDE--SQQVDLTTYAGGERFQLIEAKQKVNKKTYPCCP 190 (205)
T ss_dssp EEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEEC--SSSCBCTTSCTTCSEEEEEEEEEEEEEEETTEE
T ss_pred EEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEec--CcccchhccccCCcEEEEeeEEEEEEEEeCCCC
Confidence 4799999999999999 8999999999999999999999999974 34567788899999999999999999899864
Q ss_pred -cceEEEEEEEEEE
Q psy5854 80 -NFTCLEVIFVLKR 92 (392)
Q Consensus 80 -~ys~l~~~~~l~R 92 (392)
.|+.+.++|+|||
T Consensus 191 ~~y~dit~~i~lrR 204 (205)
T 4aoe_A 191 QSFEDIELRVTFKK 204 (205)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred CCcceEEEEEEEEE
Confidence 5999999999999
No 39
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.69 E-value=9.9e-17 Score=146.37 Aligned_cols=98 Identities=10% Similarity=0.180 Sum_probs=80.9
Q ss_pred CeeeeeEEEEEeec---eeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecC
Q psy5854 1 MTSEYRLTLKLSCA---MNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYS 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~---mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~ 77 (392)
+.|.+|++++++|+ ||++ |+|+|+|+|+||+|+++++.+.|..+ +++..+..+++||++.+....+....|+
T Consensus 124 V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~ 198 (228)
T 2wn9_A 124 VMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTD-QVDLSSYYASSKYEILSATQTRQVQHYS 198 (228)
T ss_dssp EEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCS-BCBCTTCCTTCSEEEEEEEEEEEEECCS
T ss_pred EEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCC-ccchhhceecCCEEEEEEEEEEEEEeec
Confidence 47999999999999 9999 99999999999999999999998753 5677778899999999999888877786
Q ss_pred C--CcceEEEEEEEEEEeceEEEEEeec
Q psy5854 78 T--GNFTCLEVIFVLKRRLGYYLFHTYI 103 (392)
Q Consensus 78 ~--~~ys~l~~~~~l~R~~~~y~~~~~i 103 (392)
+ |.|+++.++|+|||+++||++++++
T Consensus 199 ~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 199 CCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp SCSSCEEEEEEEEEEEECC---------
T ss_pred CCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 5 7899999999999999999999865
No 40
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.67 E-value=2.5e-16 Score=141.23 Aligned_cols=91 Identities=14% Similarity=0.338 Sum_probs=83.3
Q ss_pred CeeeeeEEEEEeece-eecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccccccccceeEEeeeeeeeeeecC--
Q psy5854 1 MTSEYRLTLKLSCAM-NFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYS-- 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~m-dl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~-- 77 (392)
+.|.+|++++++|+| |+++ ||+|+|+|+||||+|+++++++.|..+.+++..+..+++||++.+....++...|+
T Consensus 110 V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~ 187 (203)
T 2bj0_A 110 VIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEGVVNIAEYFDSPKFDLLSATQSLNRKKYSCC 187 (203)
T ss_dssp EEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTTTSCTTTTCCCSSEEEEEEEEEEEEEECTTC
T ss_pred EEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCCccchhcceecCCEEEEEeEEEEEEEecCCC
Confidence 479999999999999 9999 99999999999999999999999975443777888999999999999988888887
Q ss_pred CCcceEEEEEEEEEEe
Q psy5854 78 TGNFTCLEVIFVLKRR 93 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~ 93 (392)
.|.|+++.++|+|||+
T Consensus 188 ~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 188 ENMYDDIEITFAFRKK 203 (203)
T ss_dssp SSEEEEEEEEEEEEEC
T ss_pred CCCeeEEEEEEEEEEC
Confidence 5789999999999996
No 41
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.66 E-value=3.7e-16 Score=140.97 Aligned_cols=94 Identities=12% Similarity=0.225 Sum_probs=83.3
Q ss_pred CeeeeeEEEEEeec---eeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCcccccccc-ccceeEEeeeeeeeeeec
Q psy5854 1 MTSEYRLTLKLSCA---MNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIE-LPQLQLVKNKTADCSQVY 76 (392)
Q Consensus 1 ~~~~~r~~~~~~C~---mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~-~~~w~l~~~~~~~~~~~~ 76 (392)
+.|.+|++++++|+ ||++ |+|+|+|+|+||+|+++++.+.|.. ++++..+..+ ++||++.+....++...|
T Consensus 112 V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~-~~~~~~~~~~~~~ew~l~~~~~~~~~~~y 186 (211)
T 1uw6_A 112 VLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTT-ENSDDSEYFSQYSRFEILDVTQKKNSVTY 186 (211)
T ss_dssp EEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECC-CSSCTTTTSCTTSSEEEEEEEEEEEEEEC
T ss_pred EEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecc-cccchhhhcccCCCEEEEeeEEEEEEEEe
Confidence 47999999999999 9999 9999999999999999999999975 4567778888 999999999988888888
Q ss_pred C--CCcceEEEEEEEEEEeceEEEE
Q psy5854 77 S--TGNFTCLEVIFVLKRRLGYYLF 99 (392)
Q Consensus 77 ~--~~~ys~l~~~~~l~R~~~~y~~ 99 (392)
+ .|.|+++.++|+|||+++||++
T Consensus 187 ~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 187 SCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp TTCSSEEEEEEEEEEEEECCCC---
T ss_pred CCCCCCcceEEEEEEEEEccceeEC
Confidence 7 5789999999999999999974
No 42
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.63 E-value=7.7e-16 Score=140.41 Aligned_cols=94 Identities=15% Similarity=0.288 Sum_probs=76.5
Q ss_pred CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCC-CCccccccccccceeEEeeeeeeeeeecC--
Q psy5854 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPE-MPLAVDEKIELPQLQLVKNKTADCSQVYS-- 77 (392)
Q Consensus 1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~-~~~~~~~~~~~~~w~l~~~~~~~~~~~~~-- 77 (392)
+.|.+|++++++|+| |||+|+|+|+|+||+|+.+++.+.|..+ ..++. +..+++ |++.+....+....|.
T Consensus 125 V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~~~~~~~~~~~y~cc 197 (230)
T 4afh_A 125 VLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLL-DFYQDS-LEILENSAQRQEVVYPCC 197 (230)
T ss_dssp EEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEEEEEEEEEEECCTTC
T ss_pred EEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccce-eeecCc-EEEEEEEEEEEEEecCCC
Confidence 479999999999999 9999999999999999999999999753 34566 777888 9999999888877776
Q ss_pred CCcceEEEEEEEEEEeceEEEEEe
Q psy5854 78 TGNFTCLEVIFVLKRRLGYYLFHT 101 (392)
Q Consensus 78 ~~~ys~l~~~~~l~R~~~~y~~~~ 101 (392)
.+.|+.+.+.|.|||+++||+.+-
T Consensus 198 ~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 198 ESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp SSCEEEEEEEEEEECC--------
T ss_pred CCCccEEEEEEEEEEeechhhccc
Confidence 357999999999999999998763
No 43
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.60 E-value=1e-18 Score=145.97 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=78.2
Q ss_pred EEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-ccccccceeeeeeec
Q psy5854 89 VLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKAVDAFMSACTVS 167 (392)
Q Consensus 89 ~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~i~~~l~~~l~~ 167 (392)
++||+++||++++++||+++++++|++||+|+|+ |||+++|++++|++++++..+++.+|++| ++|++|.|+.+|++.
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998 99999999999999999999999999998 999999999999876
Q ss_pred cchhhhhc
Q psy5854 168 STSLTFND 175 (392)
Q Consensus 168 ~~~~~~~~ 175 (392)
.+.+....
T Consensus 81 v~~sl~~t 88 (137)
T 2lly_A 81 VTLSIVIT 88 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 65544333
No 44
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.29 E-value=2.5e-15 Score=138.73 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=74.1
Q ss_pred ceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-ccccccceeeeeeeccchhh
Q psy5854 94 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKAVDAFMSACTVSSTSLT 172 (392)
Q Consensus 94 ~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~i~~~l~~~l~~~~~~~ 172 (392)
++||++++++||+++++++|++||+|++++|||+++|+|++|++++++..+++.+|++| ++|+||.|+.+|+++.+.+.
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996699999999999999999999999999999 99999999999987665544
Q ss_pred h
Q psy5854 173 F 173 (392)
Q Consensus 173 ~ 173 (392)
+
T Consensus 81 ~ 81 (260)
T 1oed_E 81 M 81 (260)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.27 E-value=2.1e-15 Score=136.44 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=74.5
Q ss_pred ceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-ccccccceeeeeeeccchhh
Q psy5854 94 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKAVDAFMSACTVSSTSLT 172 (392)
Q Consensus 94 ~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~i~~~l~~~l~~~~~~~ 172 (392)
++||++++++||+++++++|++||+|+++ |||+++|++++|++++++..+++.+|++| ++|++|.|+.+|+++.+.+.
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 99999999999999999999999999998 99999999999987665544
Q ss_pred hhc
Q psy5854 173 FND 175 (392)
Q Consensus 173 ~~~ 175 (392)
...
T Consensus 80 ~~t 82 (227)
T 1oed_A 80 IIT 82 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 46
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.26 E-value=3.3e-15 Score=137.05 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=74.3
Q ss_pred ceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-ccccccceeeeeeeccchhh
Q psy5854 94 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKAVDAFMSACTVSSTSLT 172 (392)
Q Consensus 94 ~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~i~~~l~~~l~~~~~~~ 172 (392)
++||++++++||+++++++|++||+|+++ |||+++|++++|++++|+..+++.+|++| ++|++|.|+.+|+++.+.+.
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 99999999999999999999999999999 99999999999987665544
Q ss_pred hhc
Q psy5854 173 FND 175 (392)
Q Consensus 173 ~~~ 175 (392)
+..
T Consensus 80 ~~t 82 (250)
T 1oed_B 80 ILS 82 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 47
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.21 E-value=7.3e-15 Score=135.56 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=74.0
Q ss_pred ceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcc-ccccccceeeeeeeccchhh
Q psy5854 94 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YLKAVDAFMSACTVSSTSLT 172 (392)
Q Consensus 94 ~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s-~~~~i~~~l~~~l~~~~~~~ 172 (392)
++||++++++||+++++++|++||+|+++ |||+++|++++|++++|+..+++.+|++| ++|+|+.|+.+|+++.+.+.
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999996 99999999999999999999999999998 99999999999987665544
Q ss_pred hhc
Q psy5854 173 FND 175 (392)
Q Consensus 173 ~~~ 175 (392)
+..
T Consensus 80 ~~t 82 (260)
T 1oed_C 80 VNC 82 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 48
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.59 E-value=5.8e-10 Score=82.04 Aligned_cols=47 Identities=53% Similarity=0.825 Sum_probs=43.5
Q ss_pred ccceeeeehhhhhhhhhhhcccccCCCccccccccceeeeeeeccch
Q psy5854 124 PARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTS 170 (392)
Q Consensus 124 ~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~~~l~~~l~~~~~ 170 (392)
++|+++|++++|+++.+...+++.||++||++++|+|+.+|+++...
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~ 48 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFS 48 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHH
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999875433
No 49
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=95.35 E-value=0.0017 Score=38.01 Aligned_cols=27 Identities=59% Similarity=0.883 Sum_probs=25.4
Q ss_pred ccceeeeehhhhhhhhhhhcccccCCC
Q psy5854 124 PARVTLGVTSLLTLSTQHAKSQASLPP 150 (392)
Q Consensus 124 ~~Rv~l~it~lL~~~~~~~~~~~~LP~ 150 (392)
++|+++|++++|+++.+...++..+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 789999999999999999999999986
Done!