RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5854
(392 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 212 bits (542), Expect = 5e-66
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 5 YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVD--EKIELPQL 62
R++L LSC M YP D Q+CS+ + S ++TT D+ + W PL + LP
Sbjct: 122 VRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSF 181
Query: 63 QLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEA 122
QL T C+ V +TG ++CL LKR +YL YIP+C++VI+SWVSFW A
Sbjct: 182 QLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTA 241
Query: 123 APARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
PARVTLGVT+LLT++ Q A + LPPVSY+KA+D ++ AC
Sbjct: 242 IPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMT 285
Score = 122 bits (309), Expect = 5e-32
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 168 STSLTFNDILPEDPKLYDK-MRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQ 226
S S + YD +RPP G P +V ++ + + ID +M Y+A + +
Sbjct: 1 SDSKILAHLFTSG---YDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRE 57
Query: 227 TWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKT 286
+W D RL + + + +W PD+FF N K T+ PN + ++ D T
Sbjct: 58 SWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGT 117
Query: 287 ILYMVKFVFMALMEYCLVNI 306
+LY V+ + C + +
Sbjct: 118 VLYSVRISLVL---SCPMYL 134
Score = 31.7 bits (72), Expect = 0.38
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 365 IDRFSRVFFPVLFAILNCTYWIMFAE 390
+D SR FPVLF + N YW F
Sbjct: 315 VDLISRALFPVLFFVFNILYWSRFGH 340
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 208 bits (531), Expect = 1e-64
Identities = 30/164 (18%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Query: 5 YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQL 64
R + ++ ++F YP D+Q + + S T +++ D E + ++ + L +
Sbjct: 108 ERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLE-KVGKNDDVFLTGWDI 166
Query: 65 VKNKTADCSQVYSTGN--FTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEA 122
++ + + L+ + R+ Y+ + +P I+ +SW +FW +
Sbjct: 167 ESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWS--TS 224
Query: 123 APARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
A VTL V++L+ + + LP Y+ A + +
Sbjct: 225 YEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYL 268
Score = 102 bits (256), Expect = 8e-25
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 184 YDK-MRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
D PP +P V + ++ S+D+ + T+ + F + +WKD RL +
Sbjct: 6 QDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAF--DPVRS 63
Query: 243 YRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMA 297
++ + +W P+ F N + + + + D T+ Y+ +F
Sbjct: 64 GVRVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSARV 114
Score = 38.0 bits (89), Expect = 0.004
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 46/108 (42%)
Query: 284 DKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMI 343
I + F F+A++E + + +
Sbjct: 260 GAIIFMIYLFYFVAVIEVTVQHYLK----------------------------------- 284
Query: 344 PPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEF 391
+ RA +I R SR+ FPV+F + N +F F
Sbjct: 285 -----------VESQPARAASITRASRIAFPVVFLLANIILAFLFFGF 321
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 207 bits (530), Expect = 1e-64
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 5 YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQL 64
R S M+F ++P D Q+ L++E S+ L F +D E+ + +
Sbjct: 104 ARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDN-EEIDEWWI 162
Query: 65 VKNKTADCSQV---------YSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVS 115
+ S + + F+ + V R YYL+ +P LI+ SW
Sbjct: 163 RGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSV 222
Query: 116 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
FW+ E+ R+ T +LT+ + LP + Y +D + A
Sbjct: 223 FWL--ESFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYG 271
Score = 100 bits (252), Expect = 3e-24
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 189 PPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEV 248
+ +P V + + + ++ TY D + W + P + ++
Sbjct: 4 DNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQI 63
Query: 249 D--WLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMA 297
+ +W P F N + N + L+ D ++Y +F+
Sbjct: 64 ERWINNGLWVPALEFINVV----GSPDTGNKRLMLFPDGRVIYNARFLGSF 110
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 116 bits (292), Expect = 6e-31
Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 6 RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLV 65
R + ++ ++ D+Q + + S T +++ D E + ++ + L +
Sbjct: 105 RFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLE-KVGKNDDVFLTGWDIE 163
Query: 66 KNKTADCSQVYSTGN--FTCLEVIFVLKRRLGYYLFH 100
++ + + L+ + R+ G++ H
Sbjct: 164 SFTAVVKPANFALEDRLESKLDYQLRISRQGGHHHHH 200
Score = 103 bits (259), Expect = 2e-26
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 185 DKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYR 244
PP +P V + ++ S+D+ + T+ + F + +WKD RL +
Sbjct: 4 MVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAF--DPVRSGV 61
Query: 245 LLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVF 295
++ + +W P+ F N + + + + D T+ Y+ +F
Sbjct: 62 RVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSA 108
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 68.0 bits (166), Expect = 8e-13
Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVD----EKIELPQLQL 64
+ SC +N + +P D Q CSL+ +L++ +++ + + E I P +
Sbjct: 126 FRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEWEIIHKPAKKN 185
Query: 65 VKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAP 124
+ Y F +++R+ +Y+ + P LI ++ ++F++ E +
Sbjct: 186 IYGDKFPNGTNYQDVTFY-----LIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SG 239
Query: 125 ARVTLGVTSLLTLS 138
+++ + LL +
Sbjct: 240 EKMSTAICVLLAQA 253
Score = 42.2 bits (99), Expect = 2e-04
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y+K RP K + + +T+ L S+ E T +++ W DHRL SE
Sbjct: 17 YNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNA---SE 73
Query: 243 YRLLEVDWL----KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMAL 298
Y ++ L + +W PD +N + N V + + + ++ +F +
Sbjct: 74 YS--DISILRLRPELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRS- 128
Query: 299 MEYCLVNI 306
C +N+
Sbjct: 129 --SCPINV 134
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 68.0 bits (166), Expect = 9e-13
Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLV--- 65
+ SC + M +P D Q C++ +S ++ T ++I Q + + D E Q +
Sbjct: 124 YRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKP 183
Query: 66 -KNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAP 124
+ Y F +++R+ +Y+ +T +P LI I++ + F++ P+ A
Sbjct: 184 SRKNWRSDDPSYEDVTFY-----LIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AG 237
Query: 125 ARVTLGVTSLLTLS 138
+++L +++LL L+
Sbjct: 238 EKMSLSISALLALT 251
Score = 44.9 bits (106), Expect = 3e-05
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRL-PENMTS 241
Y+ RP + G V +T+ L ++E + +F W D+RL+ P +
Sbjct: 15 YNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDP----A 70
Query: 242 EYRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALM 299
Y ++ + ++W+PD N +F+ + V + + + ++ +
Sbjct: 71 AYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEIT--LHVNVLVQHTGAVSWHPSAIYRS-- 126
Query: 300 EYCLVNI 306
C + +
Sbjct: 127 -SCTIKV 132
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 67.2 bits (164), Expect = 1e-12
Identities = 25/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNK 68
+ +C + +P D Q CSL S ++ ++ Q E + ++ E + +
Sbjct: 123 YRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRP 182
Query: 69 TADCSQVYST---GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPA 125
T +F + +++R+ +Y+ + P LI + + +++ +A
Sbjct: 183 AKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQ 242
Query: 126 RVTLGVTSLLTLSTQHAKSQASLPPVS 152
+ TL ++ LL + +P S
Sbjct: 243 KCTLSISVLLAQTIFLFLIAQKVPETS 269
Score = 45.3 bits (107), Expect = 2e-05
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
YDK +P K V +T+ L S++E +++ W D+RL TSE
Sbjct: 14 YDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLS---WNTSE 70
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y +++ + + +W PD +N F+ V +Y D ++ ++ ++ +
Sbjct: 71 YEGIDLVRIPSELLWLPDVVLENNVDGQFE--VAYYANVLVYNDGSMYWLPPAIYRS--- 125
Query: 301 YCLVNI 306
C + +
Sbjct: 126 TCPIAV 131
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 60.7 bits (147), Expect = 3e-12
Identities = 24/43 (55%), Positives = 36/43 (83%)
Query: 124 PARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
PARV LG+T++LTL+TQ + S+ASLP VSY+KA+D +++ C +
Sbjct: 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLL 44
Score = 26.4 bits (58), Expect = 4.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 273 TIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIV 307
++P D + + FVF AL+EY VN V
Sbjct: 25 SLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFV 59
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 66.0 bits (161), Expect = 4e-12
Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 13/151 (8%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVD-------EKIELPQ 61
K C + +P D Q C++++ ++ + + + P +
Sbjct: 124 FKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRG 183
Query: 62 LQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPE 121
+ T Y + F+++R Y++ + IP L ++ + F++ +
Sbjct: 184 WKHWVYYTCCPDTPYLDITYH-----FIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTD 238
Query: 122 AAPARVTLGVTSLLTLSTQHAKSQASLPPVS 152
+ ++TL ++ LL+L+ +P S
Sbjct: 239 -SGEKMTLSISVLLSLTVFLLVIVELIPSTS 268
Score = 46.4 bits (110), Expect = 8e-06
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y+K+ RP + + + ++ L ++DE + ++ Q W D RLR N ++
Sbjct: 15 YNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLR--WNP-AD 71
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y ++ L ++W PD N F + + + L I++ +F +
Sbjct: 72 YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKS--- 126
Query: 301 YCLVNI 306
YC + +
Sbjct: 127 YCEIIV 132
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 64.6 bits (157), Expect = 1e-11
Identities = 21/133 (15%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNK 68
K C + +P D Q C++++ ++ + + + P + +E + + +
Sbjct: 148 FKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRP-DLSTFMESGEWVMKDYR 206
Query: 69 TADCSQVYST-GNFTCLEVIF--VLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPA 125
Y+ + L++ + +++R Y++ + IP L ++ + F++ + +
Sbjct: 207 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTD-SGE 265
Query: 126 RVTLGVTSLLTLS 138
++TL ++ LL+L+
Sbjct: 266 KMTLSISVLLSLT 278
Score = 45.0 bits (106), Expect = 3e-05
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y+K+ RP + + + ++ L ++DE + ++ Q W D RLR ++
Sbjct: 39 YNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLR---WNPAD 95
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y ++ L ++W PD N F + + + L I++ +F +
Sbjct: 96 YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKS--- 150
Query: 301 YCLVNI 306
YC + +
Sbjct: 151 YCEIIV 156
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 63.6 bits (154), Expect = 3e-11
Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKN- 67
+ +C + +P D Q CSL S ++ ++ Q E V E I + +N
Sbjct: 123 YRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEG-EVVEWIHIDPEDFTENG 181
Query: 68 --KTADCSQVYSTGNFTC------LEVIF--VLKRRLGYYLFHTYIPTCLIVIMSWVSFW 117
+ E+IF +++R+ +Y+ + P LI + + ++
Sbjct: 182 EWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYF 241
Query: 118 IKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS 152
+ +A + TL ++ LL + +P S
Sbjct: 242 LPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETS 276
Score = 46.7 bits (110), Expect = 8e-06
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
YDK +P K V +T+ L S++E +++ W D+RL TSE
Sbjct: 14 YDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLS---WNTSE 70
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y +++ + + +W PD +N F+ N V +Y D ++ ++ ++ +
Sbjct: 71 YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRS--- 125
Query: 301 YCLVNI 306
C + +
Sbjct: 126 TCPIAV 131
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 63.2 bits (153), Expect = 4e-11
Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDL-IFQWDPEMPLAVDEKIELPQLQLVKN 67
+ SC + M +P D Q C++ +S ++ T ++ + ++I + Q +N
Sbjct: 148 YRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTEN 207
Query: 68 KTADCSQVYSTGNFTC-------LEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKP 120
S N+ + +++R+ +Y+ +T +P LI I++ + F++ P
Sbjct: 208 GQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPP 267
Query: 121 EAAPARVTLGVTSLLTLSTQHAKSQASLPPVS 152
+A +++L +++LL L+ +P S
Sbjct: 268 DAG-EKMSLSISALLALTVFLLLLADKVPETS 298
Score = 44.3 bits (104), Expect = 4e-05
Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y+ RP + G V +T+ L ++E + +F W D+RL+ +
Sbjct: 39 YNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQW---DPAA 95
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y ++ + ++W+PD N +F+ + V + + + ++ +
Sbjct: 96 YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEIT--LHVNVLVQHTGAVSWHPSAIYRS--- 150
Query: 301 YCLVNI 306
C + +
Sbjct: 151 SCTIKV 156
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 61.3 bits (148), Expect = 2e-10
Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 25/149 (16%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQL---- 64
+ SC +N + +P D Q CSL+ +L++ +++ + D IE +
Sbjct: 147 FRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFT 206
Query: 65 ---------------VKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIV 109
+ Y F +++R+ +Y+ + P LI
Sbjct: 207 ENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFY-----LIIRRKPLFYVINFITPCVLIS 261
Query: 110 IMSWVSFWIKPEAAPARVTLGVTSLLTLS 138
++ ++F++ E + +++ + LL +
Sbjct: 262 FLAALAFYLPAE-SGEKMSTAICVLLAQA 289
Score = 42.1 bits (98), Expect = 2e-04
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y+K RP K + + +T+ L S+ E T +++ W DHRL + S+
Sbjct: 38 YNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSD 97
Query: 243 YRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYC 302
+L + + +W PD +N + N V + + + ++ +F + C
Sbjct: 98 ISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRS---SC 151
Query: 303 LVNI 306
+N+
Sbjct: 152 PINV 155
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 49.0 bits (117), Expect = 6e-07
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 184 YDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSE 242
Y + RP + + V + ++ L ++DE + ++ Q W D+ L+ +
Sbjct: 16 YSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNP---DD 72
Query: 243 YRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALME 300
Y ++ + + +WRPD N F + V L I + +F +
Sbjct: 73 YGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTK--VLLDYTGHITWTPPAIFKS--- 127
Query: 301 YCLVNI 306
YC + +
Sbjct: 128 YCEIIV 133
Score = 34.7 bits (80), Expect = 0.028
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 8 TLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPE 48
K C + +P D Q CS+++ + ++ + + +
Sbjct: 124 IFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESD 164
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 47.9 bits (114), Expect = 1e-06
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 184 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEY 243
Y+ P + +P VYF ++++ + +DE + + +W DH L+ N SEY
Sbjct: 14 YNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQ--WN-VSEY 70
Query: 244 RLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEY 301
++ + ++W PD NA + + + + Y+
Sbjct: 71 PGVKQVSVPISSLWVPDLAAYNAISKPE---VLTPQLALVNSSGHVQYLPSIRQRF---S 124
Query: 302 CLVNI 306
C V+
Sbjct: 125 CDVSG 129
Score = 29.8 bits (67), Expect = 1.1
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNK 68
+ SC ++ + C L+ S +H + +L Q + I + +LV
Sbjct: 121 QRFSCDVSGV-DTESGATCKLKFGSWTHHSRELDLQMQEA---DISGYIPYSRFELVGVT 176
Query: 69 TADCSQVYSTGNFTCLEVIF--VLKRR 93
+ Y +V F +++
Sbjct: 177 QKRSERFYECCKEPYPDVTFTVTFRKK 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 3e-06
Identities = 45/347 (12%), Positives = 89/347 (25%), Gaps = 146/347 (42%)
Query: 17 FMIYPHDTQE----CSLQMESLSHTTDDL---------IFQW--DPE------------- 48
+ Y + + + L TT D I +W +P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 49 -MPLAVDEKIELPQLQLVKNKTADCSQV-YSTGNF--------TCLEVIFVLKRRLGYYL 98
PL I + +QL + + ++ G + +
Sbjct: 237 SCPL-----IGV--IQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVT--------- 279
Query: 99 FHTYIPTCLIVIMSWVSFWIKPEAAPARVTL----GVTSLLTLSTQHAKSQASLPPVSYL 154
+ SW SF+ + +T+ GV A SLPP
Sbjct: 280 -----AVAIAETDSWESFF---VSVRKAITVLFFIGVRC------YEAYPNTSLPPSILE 325
Query: 155 KAVD------AFMSACT-VSSTSL-----TFNDILPEDPKLY------------------ 184
+++ + M + + ++ + N LP ++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 185 -----------------DKMRPPKKEGQPTIVY--------FH------VTVMGLDSIDE 213
D+ R P E + FH + + + +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 214 NSMTYAAD-----IFFAQTWKDHRLR-----LPENMTSEYRLLEVDW 250
N++++ A ++ D LR + E + L V W
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKW 490
Score = 40.4 bits (94), Expect = 0.001
Identities = 70/472 (14%), Positives = 114/472 (24%), Gaps = 189/472 (40%)
Query: 19 IYPHDTQECSLQME---SLSHTTDDLIFQWDPEMPLAVDEKIELPQ--LQLVKNKTADCS 73
+ +Q LQ + L T+ +P P EL L V +
Sbjct: 26 SFFIASQ---LQEQFNKILPEPTEGFAADDEPTTP------AELVGKFLGYV----SSLV 72
Query: 74 QVYSTGNFTCLEVIFVLKRRLGY----YLF----HTYI-------PTCLIVIMSWVSFWI 118
+ G F VL L YL H T L+ + +I
Sbjct: 73 EPSKVGQFD-----QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 119 KPEAAPAR-VTLGVTSLLTLSTQHAKS-QASL--------PPVSYLK-----------AV 157
R S L + A L Y + V
Sbjct: 128 TARIMAKRPFDKKSNSALF---RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 158 DAFMSACTVSSTSLTFNDILPEDPKLYDK-------MRPPKKEGQPTIVYF-HVTVMGLD 209
+ + + L + K++ + + P P Y + +
Sbjct: 185 GDLIKFSAETLSELIRTT--LDAEKVFTQGLNILEWLENP--SNTPDKDYLLSIPI---- 236
Query: 210 SIDENSMTYAADIFFAQ------TWKDHRLRLPENMTSEYRLLEV--------------- 248
S I Q T K P + S +
Sbjct: 237 -----SCPL---IGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 249 DWLKNMWRPDSFFKNA-KAVT--FQ-----TMTIPNHYVWLYKDKTILYMVKFVFMALME 300
W +SFF + KA+T F PN + +++E
Sbjct: 288 SW-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP---------------SILE 325
Query: 301 YCLVNIVLGDSDLPKPPEP------AKQDKIFELAAKENARL------------------ 336
L N + P P Q+++ + K N+ L
Sbjct: 326 DSLEN---NE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 337 LTGQPM-------------IPPNHQQAQRNLAQRARTRAINIDRFSRVFFPV 375
++G P P Q++ ++R +FS F PV
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-------KFSNRFLPV 423
Score = 32.7 bits (74), Expect = 0.23
Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 74/221 (33%)
Query: 196 PTIVYFHVTVMG---LDSIDENSMTYAADI--------------FFAQTWKDHRLRLPEN 238
PT +F + + + E + +AAD + + + +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS-------LVEPS 75
Query: 239 MTSEYRLLEVDWLKNMWRP--DSFFKN----AKAVTFQTMTIPNHYVWLYKDKTILYMVK 292
++ +V L + + + A A L ++ T L K
Sbjct: 76 KVGQFD--QV--LNLCLTEFENCYLEGNDIHALAAKL-----------LQENDTTLVKTK 120
Query: 293 FVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLT---GQ--------- 340
+ Y I+ K A +F + NA+L+ GQ
Sbjct: 121 ELIKN---YITARIMAKRP-FDKKSNSA----LFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 341 ---------PMIPPNHQQAQRNLAQRARTRAINIDRFSRVF 372
++ + + L++ RT F++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 28.5 bits (63), Expect = 4.8
Identities = 31/180 (17%), Positives = 48/180 (26%), Gaps = 52/180 (28%)
Query: 231 HRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVT--FQTMTIPNHYVWLYKDKTIL 288
H L +P T+ + + L+ + F K T F P L K +
Sbjct: 18 HVLLVP---TASFFIASQ--LQ-----EQFNKILPEPTEGFAADDEPTTPAELVG-KFLG 66
Query: 289 YMVKFV-------FMALMEYCLVNI---VLGDSD-------LPKPPEPAKQDKIFELA-A 330
Y+ V F ++ CL L +D L K EL
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL-QENDTTLVKTKELIKN 125
Query: 331 KENARLLTGQPMIPPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAIL-----NCTYW 385
AR++ +P A L + + AI Y+
Sbjct: 126 YITARIMAKRP-FDKKSNSA---LFRAVGEGNAQL-----------VAIFGGQGNTDDYF 170
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 46.0 bits (109), Expect = 6e-06
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 184 YDKM-RP---PKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENM 239
+ RP P + +P V + + + ++E + + TW D L N
Sbjct: 11 IRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAW--NS 68
Query: 240 TSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALM 299
+ + V + ++W PD NA + + + D +LYM
Sbjct: 69 SHSPDQVSVP-ISSLWVPDLAAYNAISKPE---VLTPQLARVVSDGEVLYMPSIRQRF-- 122
Query: 300 EYCLVNI 306
C V+
Sbjct: 123 -SCDVSG 128
Score = 34.5 bits (79), Expect = 0.035
Identities = 8/97 (8%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVK-- 66
+ SC ++ + C +++ S +H + ++ E + + + +++
Sbjct: 120 QRFSCDVS-GVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVT 178
Query: 67 -----NKTADCSQVYSTGNFTCLEVIFVLKRRLGYYL 98
+ C + Y + +++ +
Sbjct: 179 QKKNSVTYSCCPEAYEDVEVS-----LNFRKKGRSEI 210
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 44.0 bits (104), Expect = 9e-06
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 90 LKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLP 149
+ +Y + IP LI ++ + F++ E ++TL ++ LL+L+ +P
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSE-CGEKITLCISVLLSLTVFLLLITEIIP 61
Query: 150 PVS 152
S
Sbjct: 62 STS 64
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 43.7 bits (103), Expect = 1e-05
Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 72 CSQVYSTGNFTCLEVIFVLKRRLG------YYLFHTYIPTCLIVIMSWVSFWIKPEAAPA 125
L + G Y++ + P ++ + F++ + +
Sbjct: 26 IGTESVEAGRL-----IELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTD-SGE 79
Query: 126 RVTLGVTSLLTLSTQHAKSQASLPPVS 152
++T + L +L+ + K +P S
Sbjct: 80 KMTESKSVLKSLTEKLKKIVELIPSTS 106
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 44.1 bits (104), Expect = 1e-05
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 72 CSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGV 131
F +R+ +Y + IP LI ++ + F++ + ++TL +
Sbjct: 11 VDLGTENLYFQ-----SNARRKPLFYTINLIIPCVLITSLAILVFYLPSD-CGEKMTLCI 64
Query: 132 TSLLTLSTQHAKSQASLPPVS 152
+ LL L+ +PP S
Sbjct: 65 SVLLALTVFLLLISKIVPPTS 85
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 44.0 bits (104), Expect = 2e-05
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 180 DPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENM 239
+ + P P V + +M + D ++ +WK
Sbjct: 8 NQITGESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLL-- 65
Query: 240 TSEYRLLEVDWL--KNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYM 290
L+ L MW PD F NA A V + KD +++Y+
Sbjct: 66 --SSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLS---ADRVVVSKDGSVIYV 113
Score = 28.2 bits (63), Expect = 3.4
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVK-- 66
++ +C + + C +++ S +H E + + E + P+ L+
Sbjct: 118 VRFTCDLI-NVDTEPGATCRIKVGSWTHDNKQFALITGEEGVVNIAEYFDSPKFDLLSAT 176
Query: 67 -----NKTADCSQVYSTGNFTCLEVIFVLKRR 93
K + C +Y T F +++
Sbjct: 177 QSLNRKKYSCCENMYDDIEIT-----FAFRKK 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 51/308 (16%), Positives = 100/308 (32%), Gaps = 58/308 (18%)
Query: 1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELP 60
+ + L+ K+ C M+F I+ + + C ++ + ++ E ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNC--------NSPETVL------------EMLQKL 205
Query: 61 QLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKP 120
Q+ N T+ + I ++ L L CL+ ++ V
Sbjct: 206 LYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLL-VLLNV--Q-NA 256
Query: 121 EAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLK-AVDAFMSACTVSSTSLTFNDILPE 179
+A A L LLT T+ + L + ++D T L
Sbjct: 257 KAWNA-FNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 180 DPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRL-RLPEN 238
P + P ++++ +SI + T+ WK +L
Sbjct: 314 RP---QDLPREVLTTNP----RRLSIIA-ESIRDGLATW-------DNWKHVNCDKLTTI 358
Query: 239 MTSEYRLLEVDWLKNMWRPDSFF-KNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMA 297
+ S +LE + M+ S F +A + +++ +W K V V
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSL----IWFDVIK---SDVMVVVNK 410
Query: 298 LMEYCLVN 305
L +Y LV
Sbjct: 411 LHKYSLVE 418
Score = 34.1 bits (77), Expect = 0.10
Identities = 62/343 (18%), Positives = 107/343 (31%), Gaps = 93/343 (27%)
Query: 28 SLQMESLSHTTDDLIFQWDPE-----MPLAVD---EKIELPQLQLVKN-KTADCSQVYST 78
SL ++ L DL P P + E I L N K +C ++ +T
Sbjct: 305 SLLLKYLDCRPQDL-----PREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKL-TT 357
Query: 79 GNFTCLEVI-FVLKRRLGYYLF-----HTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVT 132
+ L V+ R++ + +IPT L+ + W + V
Sbjct: 358 IIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSL-----IWFDVIK---SDVMVVV 408
Query: 133 SLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKM----R 188
+ L H S L S ++ S L L + L+ +
Sbjct: 409 NKL-----HKYS---------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 189 PPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPEN--MTSEYRLL 246
PK F + +D+ ++ H L+ E+ + +R++
Sbjct: 455 IPKT--------FDSDDLIPPYLDQYFYSHIG----------HHLKNIEHPERMTLFRMV 496
Query: 247 EVD--WLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILY------MVKFVFMA- 297
+D +L+ R DS NA T+ Y D Y ++ F+
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 298 --LMEY---CLVNIVLGDSDLPKPPEPAKQDKIFELAAKENAR 335
L+ L+ I L + + IFE A K+ R
Sbjct: 557 ENLICSKYTDLLRIALMA----------EDEAIFEEAHKQVQR 589
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 43.7 bits (103), Expect = 4e-05
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 8/123 (6%)
Query: 184 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEY 243
P + P V T+ + D ++ + Q WK + L N
Sbjct: 26 SPM-YPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNI 84
Query: 244 RLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCL 303
++W PD ++ + D +++++ C
Sbjct: 85 TDFRTS-AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSF---MCD 137
Query: 304 VNI 306
Sbjct: 138 PTG 140
Score = 34.8 bits (80), Expect = 0.033
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 18/101 (17%)
Query: 8 TLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKI-------ELP 60
L C + + C+++ S ++ ++ + D + VD E+
Sbjct: 131 RLSFMCDPT-GVDSEEGATCAVKFGSWVYSGFEIDLKTDTD---QVDLSSYYASSKYEIL 186
Query: 61 QLQLVKNKT--ADCSQVYSTGNFTCLEVIFVLKRRLGYYLF 99
+ + C + Y N + R F
Sbjct: 187 SATQTRQVQHYSCCPEPYIDVNLV-----VKFRERRAGNGF 222
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain,
micelles, membrane protein; NMR {Homo sapiens} SCOP:
j.35.1.1
Length = 28
Score = 39.3 bits (91), Expect = 4e-05
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 123 APARVTLGVTSLLTLSTQHAKSQASLP 149
APARV LG+T++LT++TQ + S+ASLP
Sbjct: 1 APARVGLGITTVLTMTTQSSGSRASLP 27
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 41.8 bits (97), Expect = 2e-04
Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 96 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTL-------STQHAKSQASL 148
+Y+ + P LI + + +++ +A + TL ++ LL + + ++ ++
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 149 PPVSYLKAVDAFMSACTVSSTSLTFN 174
P + F+S V + + N
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCVIVLN 88
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 40.3 bits (93), Expect = 7e-04
Identities = 11/86 (12%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 96 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTL-------STQHAKSQASL 148
+Y+ + P LI ++ ++F++ E + +++ ++ LL S + ++ ++
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAE-SGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 149 PPVSYLKAVDAFMSACTVSSTSLTFN 174
P + + + + + N
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLN 87
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 39.5 bits (91), Expect = 9e-04
Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 96 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTL-------STQHAKSQASL 148
+Y+ +T IP LI I++ + F++ P+ A +++L +++LL + + + ++ S+
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPD-AGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 149 PPVSYLKAVDAFMSACTVSSTSLTFN 174
P + + A +V + + N
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLN 87
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 39.0 bits (90), Expect = 0.001
Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 96 YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTL-------STQHAKSQASL 148
Y++ + IP L ++ + F++ + + ++TL ++ LL+L + +++
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTD-SGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 149 PPVSYLKAVDAFMSACTVSSTSLTFN 174
P + ++ T + N
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVIN 87
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 38.7 bits (90), Expect = 0.001
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 14/130 (10%)
Query: 184 YDK----MRPPKKEGQPTIVYFHVTVMGLDSIDE----NSMTYAADIFFAQTWKDHRLRL 235
Y++ P + V F +++ L SI++ + +W D LR
Sbjct: 17 YEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRW 76
Query: 236 PENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVF 295
+++ +E+ +W PD N+ + ++ + T+L++ V
Sbjct: 77 DPEPPFDFQKIEIS-PDEIWTPDIKLFNSVDLDMTLDRTTQ--AIVFSNGTVLWIPPAVL 133
Query: 296 MALMEYCLVN 305
C+
Sbjct: 134 KV---LCVSQ 140
Score = 37.2 bits (86), Expect = 0.005
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 9 LKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNK 68
LK+ C D C Q S ++ D++ + + V L++++N
Sbjct: 133 LKVLCVSQD-----DVDSCHFQFGSWVYSVDEVDIHFMDD-KAEVLLDFYQDSLEILENS 186
Query: 69 TADCSQVYSTGNFTCLEVIF--VLKRRLGYYLF 99
VY +E+ + L+ G +
Sbjct: 187 AQRQEVVYPCCESAYVEMKYLLALRSENGNSTY 219
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.6
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 242 EYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTI 274
+ L+ LK ++ DS A A+ + T+
Sbjct: 21 ALKKLQAS-LK-LYADDS----APALAIKA-TM 46
Score = 26.8 bits (58), Expect = 8.5
Identities = 4/14 (28%), Positives = 8/14 (57%), Gaps = 3/14 (21%)
Query: 120 PEAAPARVTLGVTS 133
++APA L + +
Sbjct: 34 DDSAPA---LAIKA 44
Score = 26.8 bits (58), Expect = 9.1
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 15/35 (42%)
Query: 26 ECSLQMESLSHTTDDLIFQWDPE-MP-LAVDEKIE 58
+ SL++ + + P LA+ +E
Sbjct: 26 QASLKL-------------YADDSAPALAIKATME 47
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 28.0 bits (63), Expect = 4.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 188 RPPKKEGQPTIVYFH 202
P K G P ++Y+H
Sbjct: 66 FPKKAAGLPAVLYYH 80
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer
sandwich, ligase, purine biosynthesis, structural
genomics; HET: ATP CIT; 2.03A {Methanocaldococcus
jannaschii} PDB: 2yzl_A*
Length = 242
Score = 28.0 bits (63), Expect = 4.9
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 274 IPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIV-------LGDSDLPKPPEPAKQDKIF 326
+ HY+ + + ++ K V + +E + NI + + P P I
Sbjct: 72 VKTHYIKYIEPRYMI--AKKVEIIPIEVIVRNIAAGSLCRRYPFEEGKELPFP-----IV 124
Query: 327 ELAAKENARLLTGQPMIPPNHQQAQ----RNLAQRARTRAINIDRFSRVFF 373
+ K + G PM+ + A R + + A+ ++ + F
Sbjct: 125 QFDYKNDEY---GDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLF 172
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 27.5 bits (61), Expect = 8.1
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 189 PPKKEGQPTIVYFH 202
P E +VY H
Sbjct: 21 PTTTEPTNYVVYLH 34
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 27.3 bits (61), Expect = 9.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 188 RPPKKEGQPTIVYFH 202
RP E P +VY+H
Sbjct: 69 RPRDGERLPAVVYYH 83
>3i3f_A Hypothetical protein; structural genomics, niaid, decode,
infectious seattle structural genomics center for
infectious disease, unknown function; 1.35A {Giardia
lamblia}
Length = 141
Score = 26.5 bits (59), Expect = 9.5
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 113 WVSFWIKPEAAPARVTLGV 131
+ + P P R +
Sbjct: 105 YREVFCVPATRPCRCCVRA 123
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 26.9 bits (59), Expect = 9.6
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 182 KLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDH 231
+ + + RP G+ + V V+ +S + A+ A+TW+ +
Sbjct: 114 QFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASK-DPAKTWQQY 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.420
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,050,741
Number of extensions: 350956
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 76
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)