RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5854
         (392 letters)



>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 96  YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YL 154
           +Y+ +   P  LI  +  + +++  +A   + TL ++ LL  +         +P  S  +
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 155 KAVDAFMSACTVSSTSLTFNDI 176
             +  ++      S  +  N +
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCV 84


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 72.5 bits (177), Expect = 3e-15
 Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 96  YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YL 154
           +Y+ +T IP  LI I++ + F++ P+ A  +++L +++LL ++         +P  S  +
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPD-AGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 155 KAVDAFMSACTVSST 169
             +  ++    +   
Sbjct: 62  PIIIRYLMFIMILVA 76


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 71.3 bits (174), Expect = 6e-15
 Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 96  YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YL 154
           Y++ +  IP  L   ++ + F++  + +  ++TL ++ LL+L+         +P  S  +
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTD-SGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 155 KAVDAFMSACTVSSTSLTFNDI 176
             +  +M    +   S     +
Sbjct: 62  PLIGKYMLFTMIFVISSIIITV 83


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 69.1 bits (168), Expect = 6e-14
 Identities = 12/83 (14%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 96  YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YL 154
           +Y+ +   P  LI  ++ ++F++  E +  +++  ++ LL  +     +   LP  +  +
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAE-SGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 155 KAVDAFMSACTVSSTSLTFNDIL 177
             +  ++       T +  N  +
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGI 84


>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 60.2 bits (145), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 6/125 (4%)

Query: 182 KLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTS 241
           +       P +  +P  V   +  + +  ++E +       +   TW D  L      +S
Sbjct: 13  QTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAW---NSS 69

Query: 242 EYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEY 301
                    + ++W PD    NA +       +      +  D  +LYM         + 
Sbjct: 70  HSPDQVSVPISSLWVPDLAAYNAISKPE---VLTPQLARVVSDGEVLYMPSIRQRFSCDV 126

Query: 302 CLVNI 306
             V+ 
Sbjct: 127 SGVDT 131



 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 11/91 (12%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 5   YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQL 64
             +  + SC ++  +       C +++ S +H + ++      E     +   +  + ++
Sbjct: 116 PSIRQRFSCDVSG-VDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEI 174

Query: 65  VKNKTADCSQVYS--TGNFTCLEVIFVLKRR 93
           +       S  YS     +  +EV    +++
Sbjct: 175 LDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205


>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal
           domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
          Length = 103

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 8   TLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPL 51
           + +    +NF   P D   C +  E   +T    I  W P   L
Sbjct: 61  SFQAFSYLNFTPEPSDIFSCIVTHEPDRYT---AIAYWVPRNAL 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0357    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,496,471
Number of extensions: 69538
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 13
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.6 bits)