Query psy5859
Match_columns 93
No_of_seqs 193 out of 1174
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:52:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 100.0 2.1E-29 4.6E-34 172.8 7.7 81 1-81 391-471 (499)
2 PF00067 p450: Cytochrome P450 99.9 7E-28 1.5E-32 161.0 8.0 81 1-81 359-440 (463)
3 PLN02169 fatty acid (omega-1)- 99.9 1.2E-27 2.5E-32 165.1 8.5 81 1-81 392-475 (500)
4 PLN02500 cytochrome P450 90B1 99.9 1.9E-27 4.2E-32 163.4 8.0 81 1-81 380-467 (490)
5 PLN03234 cytochrome P450 83B1; 99.9 3.9E-27 8.4E-32 162.0 8.9 81 1-81 385-469 (499)
6 KOG0156|consensus 99.9 2.2E-27 4.9E-32 163.3 7.6 80 1-81 383-463 (489)
7 PLN02971 tryptophan N-hydroxyl 99.9 4.6E-27 9.9E-32 163.4 9.0 81 1-81 424-507 (543)
8 PLN02183 ferulate 5-hydroxylas 99.9 4.8E-27 1.1E-31 162.3 8.6 81 1-81 400-482 (516)
9 PLN02394 trans-cinnamate 4-mon 99.9 6.6E-27 1.4E-31 161.0 9.0 82 1-82 390-474 (503)
10 PLN03195 fatty acid omega-hydr 99.9 6.7E-27 1.5E-31 161.5 7.9 81 1-81 409-491 (516)
11 PTZ00404 cytochrome P450; Prov 99.9 1.3E-26 2.9E-31 158.8 8.6 77 1-81 381-457 (482)
12 PLN02966 cytochrome P450 83A1 99.9 1.6E-26 3.4E-31 159.3 8.2 81 1-81 388-470 (502)
13 PLN00168 Cytochrome P450; Prov 99.9 2.1E-26 4.7E-31 159.2 8.7 81 1-81 404-490 (519)
14 PLN02774 brassinosteroid-6-oxi 99.9 1.8E-26 3.8E-31 157.8 8.1 79 1-81 363-441 (463)
15 PLN02655 ent-kaurene oxidase 99.9 2.7E-26 5.8E-31 157.0 9.0 81 1-81 358-438 (466)
16 KOG0157|consensus 99.9 1.5E-26 3.2E-31 159.7 7.7 81 1-81 389-471 (497)
17 PLN00110 flavonoid 3',5'-hydro 99.9 3.9E-26 8.4E-31 157.6 8.4 81 1-81 386-470 (504)
18 PLN03141 3-epi-6-deoxocathaste 99.9 4.3E-26 9.4E-31 155.4 7.6 78 1-81 351-428 (452)
19 PLN02687 flavonoid 3'-monooxyg 99.9 6.4E-26 1.4E-30 156.8 8.2 81 1-81 394-479 (517)
20 PLN02738 carotene beta-ring hy 99.9 1E-25 2.3E-30 159.0 9.0 81 1-81 486-569 (633)
21 PLN02290 cytokinin trans-hydro 99.9 1.1E-25 2.4E-30 155.4 7.9 79 1-81 411-490 (516)
22 PLN02987 Cytochrome P450, fami 99.9 1.9E-25 4.2E-30 153.3 9.1 81 1-81 366-446 (472)
23 PLN03018 homomethionine N-hydr 99.9 1.8E-25 3.9E-30 155.4 9.0 81 1-81 411-497 (534)
24 PLN02196 abscisic acid 8'-hydr 99.9 1.6E-25 3.4E-30 153.2 7.8 77 1-81 363-439 (463)
25 PLN02302 ent-kaurenoic acid ox 99.9 2.2E-25 4.7E-30 152.7 8.2 78 1-81 387-464 (490)
26 PLN02426 cytochrome P450, fami 99.9 2.1E-25 4.6E-30 154.0 8.1 81 1-81 391-473 (502)
27 PLN03112 cytochrome P450 famil 99.9 4.8E-25 1E-29 152.2 9.4 81 1-81 393-478 (514)
28 PLN02936 epsilon-ring hydroxyl 99.9 6.7E-25 1.5E-29 151.0 8.4 81 1-81 374-457 (489)
29 KOG0159|consensus 99.9 4.7E-24 1E-28 145.7 7.4 81 1-81 413-493 (519)
30 KOG0684|consensus 99.9 4.4E-24 9.6E-29 143.8 7.2 81 1-81 374-459 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 2.5E-22 5.5E-27 136.1 6.4 72 1-81 316-387 (411)
32 PLN02648 allene oxide synthase 99.9 4.8E-22 1E-26 137.0 7.8 79 1-81 374-462 (480)
33 PF08492 SRP72: SRP72 RNA-bind 79.1 1.7 3.8E-05 22.0 1.6 9 25-33 43-51 (59)
34 PF09201 SRX: SRX; InterPro: 77.6 2.4 5.3E-05 25.3 2.2 23 51-73 18-40 (148)
35 PF12444 Sox_N: Sox developmen 68.0 3.6 7.9E-05 22.4 1.3 20 61-80 60-79 (84)
36 PF02663 FmdE: FmdE, Molybdenu 56.2 14 0.00031 21.4 2.5 22 50-71 4-25 (131)
37 PRK14759 potassium-transportin 53.4 5.9 0.00013 17.1 0.4 6 25-30 24-29 (29)
38 PF09604 Potass_KdpF: F subuni 53.4 5.9 0.00013 16.5 0.4 6 25-30 20-25 (25)
39 KOG3506|consensus 41.6 13 0.00028 18.6 0.6 10 45-54 13-22 (56)
40 COG2101 SPT15 TATA-box binding 39.4 10 0.00022 23.7 0.0 35 23-57 35-70 (185)
41 TIGR02115 potass_kdpF K+-trans 37.6 8.5 0.00018 16.2 -0.3 7 25-31 19-25 (26)
42 cd04516 TBP_eukaryotes eukaryo 36.8 24 0.00052 21.8 1.4 55 23-78 29-87 (174)
43 PLN00062 TATA-box-binding prot 33.3 43 0.00093 20.8 2.1 54 23-76 29-85 (179)
44 PHA03162 hypothetical protein; 32.0 31 0.00066 20.5 1.2 24 47-70 2-25 (135)
45 KOG3302|consensus 31.6 21 0.00046 22.6 0.6 33 23-55 50-83 (200)
46 PF07886 BA14K: BA14K-like pro 30.7 57 0.0012 14.2 1.8 15 40-54 17-31 (31)
47 cd04518 TBP_archaea archaeal T 28.8 16 0.00035 22.5 -0.3 55 23-78 29-87 (174)
48 PF14510 ABC_trans_N: ABC-tran 28.0 13 0.00028 19.8 -0.7 19 14-32 23-41 (85)
49 smart00576 BTP Bromodomain tra 27.8 93 0.002 16.2 2.6 24 57-80 2-25 (77)
50 KOG2376|consensus 27.6 37 0.0008 25.4 1.3 19 15-33 571-589 (652)
51 PF11297 DUF3098: Protein of u 26.5 36 0.00077 17.9 0.8 14 17-30 28-41 (69)
52 PRK11901 hypothetical protein; 25.0 2.4E+02 0.0052 19.5 4.8 12 23-34 2-13 (327)
53 PRK00394 transcription factor; 24.9 23 0.0005 22.0 -0.1 33 23-55 28-61 (179)
54 cd00652 TBP_TLF TATA box bindi 23.5 90 0.002 19.2 2.3 55 23-78 29-87 (174)
55 COG0794 GutQ Predicted sugar p 23.4 57 0.0012 20.8 1.4 26 40-65 39-64 (202)
56 PTZ00218 40S ribosomal protein 22.2 42 0.00092 16.7 0.6 10 45-54 11-20 (54)
57 KOG2316|consensus 20.9 1.1E+02 0.0025 20.1 2.4 43 43-88 164-206 (277)
58 COG2191 Formylmethanofuran deh 20.3 1.2E+02 0.0026 19.4 2.4 22 49-70 22-43 (206)
59 PF14459 Prok-E2_C: Prokaryoti 20.2 38 0.00082 19.5 0.2 18 39-56 103-120 (131)
No 1
>KOG0158|consensus
Probab=99.96 E-value=2.1e-29 Score=172.82 Aligned_cols=81 Identities=37% Similarity=0.797 Sum_probs=76.7
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|.++.+++||||++||||++|+||||.+.+....++..|+|||.|+|.|+|.+||.+|+|+.|++||++|+++..+
T Consensus 391 kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~ 470 (499)
T KOG0158|consen 391 KGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCP 470 (499)
T ss_pred CCCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCC
Confidence 79999999999999999999999999999998776666888999999999999999999999999999999999999887
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
.
T Consensus 471 ~ 471 (499)
T KOG0158|consen 471 T 471 (499)
T ss_pred c
Confidence 4
No 2
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.95 E-value=7e-28 Score=160.97 Aligned_cols=81 Identities=42% Similarity=0.748 Sum_probs=72.6
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCC-CCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEI-SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPG 79 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~-~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~ 79 (93)
||+.|.++.+++|+||++|+||++|+|+||++.+. .......++|||.|+|.|+|+++|.++++++++.||++|++++.
T Consensus 359 ~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~ 438 (463)
T PF00067_consen 359 KGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELV 438 (463)
T ss_dssp TTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEES
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEEC
Confidence 79999999999999999999999999999998766 33567889999999999999999999999999999999999997
Q ss_pred CC
Q psy5859 80 DK 81 (93)
Q Consensus 80 ~~ 81 (93)
++
T Consensus 439 ~~ 440 (463)
T PF00067_consen 439 PG 440 (463)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.95 E-value=1.2e-27 Score=165.09 Aligned_cols=81 Identities=25% Similarity=0.547 Sum_probs=73.4
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCCCCC--CCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceee
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEISRR--NPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVL 77 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~--~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~ 77 (93)
||+.|++++|++||||++| +||++|+||||++++.... ....++|||.|+|.|+|++||.+|++++++.||++|+++
T Consensus 392 kGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~ 471 (500)
T PLN02169 392 AESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFK 471 (500)
T ss_pred CCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEE
Confidence 7999999999999999999 8999999999997544332 367899999999999999999999999999999999999
Q ss_pred cCCC
Q psy5859 78 PGDK 81 (93)
Q Consensus 78 ~~~~ 81 (93)
+.++
T Consensus 472 ~~~~ 475 (500)
T PLN02169 472 VIEG 475 (500)
T ss_pred EcCC
Confidence 8754
No 4
>PLN02500 cytochrome P450 90B1
Probab=99.94 E-value=1.9e-27 Score=163.35 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=73.0
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCC-------CCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHh
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISR-------RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRR 73 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~-------~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~ 73 (93)
||+.|+++.|++||||++|+||++|+||||++++... .....++|||.|+|.|+|+++|.+|++++++.|+++
T Consensus 380 kGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~ 459 (490)
T PLN02500 380 SGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLN 459 (490)
T ss_pred CCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999754321 135679999999999999999999999999999999
Q ss_pred ceeecCCC
Q psy5859 74 YRVLPGDK 81 (93)
Q Consensus 74 f~~~~~~~ 81 (93)
|+|++.++
T Consensus 460 f~~~~~~~ 467 (490)
T PLN02500 460 FNWELAEA 467 (490)
T ss_pred cEEEEcCC
Confidence 99998765
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.94 E-value=3.9e-27 Score=161.97 Aligned_cols=81 Identities=23% Similarity=0.484 Sum_probs=73.2
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCCC---CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhcee
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEIS---RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRV 76 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~---~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~ 76 (93)
|||.|.++.+++||||++| +||++|+||||+++... ......++|||.|+|.|+|+++|.+|++++++.|+++|++
T Consensus 385 ~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~ 464 (499)
T PLN03234 385 AKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDW 464 (499)
T ss_pred CCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheee
Confidence 7999999999999999999 89999999999975432 1235679999999999999999999999999999999999
Q ss_pred ecCCC
Q psy5859 77 LPGDK 81 (93)
Q Consensus 77 ~~~~~ 81 (93)
++.++
T Consensus 465 ~~~~~ 469 (499)
T PLN03234 465 SLPKG 469 (499)
T ss_pred eCCCC
Confidence 99875
No 6
>KOG0156|consensus
Probab=99.94 E-value=2.2e-27 Score=163.30 Aligned_cols=80 Identities=34% Similarity=0.584 Sum_probs=75.2
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCC-CCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSE-ISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPG 79 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~-~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~ 79 (93)
|||.|+++.|++||||++|+||++|+||||++.+ ... ....++|||.|+|.|||..+|++++.++++.||++|+|++.
T Consensus 383 kgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~-~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~ 461 (489)
T KOG0156|consen 383 KGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKG-LDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLP 461 (489)
T ss_pred CCCEEEEeehhhhcCCccCCCccccChhhhcCCccccC-CceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecC
Confidence 7999999999999999999999999999999974 444 67789999999999999999999999999999999999998
Q ss_pred CC
Q psy5859 80 DK 81 (93)
Q Consensus 80 ~~ 81 (93)
++
T Consensus 462 ~~ 463 (489)
T KOG0156|consen 462 GG 463 (489)
T ss_pred CC
Confidence 76
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.94 E-value=4.6e-27 Score=163.38 Aligned_cols=81 Identities=27% Similarity=0.532 Sum_probs=73.0
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceee
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS---RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVL 77 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~ 77 (93)
||+.|+++.|++||||++|+||++|+||||++++.. ......++|||.|+|.|+|+++|..+++++++.||++|+|+
T Consensus 424 kGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~ 503 (543)
T PLN02971 424 KGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWK 503 (543)
T ss_pred CCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEE
Confidence 799999999999999999999999999999975432 12456799999999999999999999999999999999999
Q ss_pred cCCC
Q psy5859 78 PGDK 81 (93)
Q Consensus 78 ~~~~ 81 (93)
+.++
T Consensus 504 ~~~~ 507 (543)
T PLN02971 504 LAGS 507 (543)
T ss_pred eCCC
Confidence 8764
No 8
>PLN02183 ferulate 5-hydroxylase
Probab=99.94 E-value=4.8e-27 Score=162.31 Aligned_cols=81 Identities=27% Similarity=0.569 Sum_probs=73.1
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeec
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISR--RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~--~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~ 78 (93)
|||.|.++.+++||||++|+||++|+||||++++... .....++|||.|+|.|+|+++|.+|++++++.|+++|++++
T Consensus 400 kGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~ 479 (516)
T PLN02183 400 KRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWEL 479 (516)
T ss_pred CCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEc
Confidence 7999999999999999999999999999999754321 23467999999999999999999999999999999999998
Q ss_pred CCC
Q psy5859 79 GDK 81 (93)
Q Consensus 79 ~~~ 81 (93)
.++
T Consensus 480 ~~~ 482 (516)
T PLN02183 480 PDG 482 (516)
T ss_pred CCC
Confidence 765
No 9
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.94 E-value=6.6e-27 Score=160.95 Aligned_cols=82 Identities=27% Similarity=0.565 Sum_probs=73.2
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceee
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS---RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVL 77 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~ 77 (93)
|||.|.++.|++||||++|++|++|+||||++++.. ......++|||.|+|.|+|+.+|.+|++++++.|+++|+++
T Consensus 390 ~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~ 469 (503)
T PLN02394 390 AESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELL 469 (503)
T ss_pred CCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeE
Confidence 699999999999999999999999999999975432 12356799999999999999999999999999999999999
Q ss_pred cCCCC
Q psy5859 78 PGDKC 82 (93)
Q Consensus 78 ~~~~~ 82 (93)
+.++.
T Consensus 470 ~~~~~ 474 (503)
T PLN02394 470 PPPGQ 474 (503)
T ss_pred eCCCC
Confidence 87653
No 10
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.94 E-value=6.7e-27 Score=161.48 Aligned_cols=81 Identities=27% Similarity=0.558 Sum_probs=72.4
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCC-CCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeec
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEI-SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~-~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~ 78 (93)
||+.|.++.|++||||++| +||++|+||||++.+. .......++|||.|+|.|+|+++|++|++++++.|+++|++++
T Consensus 409 kGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~ 488 (516)
T PLN03195 409 AGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQL 488 (516)
T ss_pred CCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEe
Confidence 6899999999999999999 9999999999996432 2234567999999999999999999999999999999999998
Q ss_pred CCC
Q psy5859 79 GDK 81 (93)
Q Consensus 79 ~~~ 81 (93)
.++
T Consensus 489 ~~~ 491 (516)
T PLN03195 489 VPG 491 (516)
T ss_pred cCC
Confidence 654
No 11
>PTZ00404 cytochrome P450; Provisional
Probab=99.94 E-value=1.3e-26 Score=158.78 Aligned_cols=77 Identities=31% Similarity=0.679 Sum_probs=71.6
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|.++.+++||||++|+||++|+||||++.. ....++|||.|+|.|+|+++|++|++++++.|+++|++++.+
T Consensus 381 ~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~ 456 (482)
T PTZ00404 381 KDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSID 456 (482)
T ss_pred CCCEEEeeHHHhhCCccccCCccccCccccCCCC----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCC
Confidence 7999999999999999999999999999998642 456899999999999999999999999999999999999865
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 457 ~ 457 (482)
T PTZ00404 457 G 457 (482)
T ss_pred C
Confidence 4
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.94 E-value=1.6e-26 Score=159.28 Aligned_cols=81 Identities=30% Similarity=0.647 Sum_probs=73.2
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCCC-CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeec
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~ 78 (93)
|||.|.++.|++||||++| ++|++|+||||++.+.. ......++|||.|+|+|+|++||.+|++++++.||++|+|++
T Consensus 388 ~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~ 467 (502)
T PLN02966 388 AGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKL 467 (502)
T ss_pred CCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeC
Confidence 7999999999999999999 99999999999975432 124568999999999999999999999999999999999998
Q ss_pred CCC
Q psy5859 79 GDK 81 (93)
Q Consensus 79 ~~~ 81 (93)
.++
T Consensus 468 ~~~ 470 (502)
T PLN02966 468 PNG 470 (502)
T ss_pred CCC
Confidence 765
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.94 E-value=2.1e-26 Score=159.19 Aligned_cols=81 Identities=28% Similarity=0.527 Sum_probs=72.2
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCC------CCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhc
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEI------SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRY 74 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~------~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f 74 (93)
||+.|.++.+++||||++|++|++|+||||++... .......++|||.|+|.|+|++||.+|++++++.||++|
T Consensus 404 kGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f 483 (519)
T PLN00168 404 KGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREF 483 (519)
T ss_pred CCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999997422 112345799999999999999999999999999999999
Q ss_pred eeecCCC
Q psy5859 75 RVLPGDK 81 (93)
Q Consensus 75 ~~~~~~~ 81 (93)
+|++.++
T Consensus 484 ~~~~~~~ 490 (519)
T PLN00168 484 EWKEVPG 490 (519)
T ss_pred cceeCCC
Confidence 9998764
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=99.94 E-value=1.8e-26 Score=157.77 Aligned_cols=79 Identities=27% Similarity=0.526 Sum_probs=71.7
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|+++.+++||||++|+||++|+||||++.+.. ....++|||.|+|.|+|+++|.+|++++++.||++|++++.+
T Consensus 363 kGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~--~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~ 440 (463)
T PLN02774 363 KGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE--SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVG 440 (463)
T ss_pred CCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC--CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECC
Confidence 799999999999999999999999999999965422 223689999999999999999999999999999999999976
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 441 ~ 441 (463)
T PLN02774 441 G 441 (463)
T ss_pred C
Confidence 5
No 15
>PLN02655 ent-kaurene oxidase
Probab=99.94 E-value=2.7e-26 Score=156.99 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=73.9
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|+++.+++||||++|+||++|+|+||++..........++|||.|+|.|+|+.+|..+++++++.||++|++++.+
T Consensus 358 ~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 437 (466)
T PLN02655 358 AGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLRE 437 (466)
T ss_pred CCCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCC
Confidence 79999999999999999999999999999997654333457899999999999999999999999999999999999876
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 438 ~ 438 (466)
T PLN02655 438 G 438 (466)
T ss_pred C
Confidence 5
No 16
>KOG0157|consensus
Probab=99.94 E-value=1.5e-26 Score=159.66 Aligned_cols=81 Identities=52% Similarity=1.038 Sum_probs=74.5
Q ss_pred CCCEEEEchhhhhcCCCCCC-CCCCCCCCCCCCCCCC-CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeec
Q psy5859 1 MGATVAAFIYQIHRDPRHWS-NPHCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~-~p~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~ 78 (93)
||+.|+++++++|||+.+|+ ||++|||+||+++... ..+++.|+|||+|+|.|+|+.||++|++++++.++++|+|++
T Consensus 389 kG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~ 468 (497)
T KOG0157|consen 389 KGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEP 468 (497)
T ss_pred CCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEe
Confidence 79999999999999999996 9999999999975433 445789999999999999999999999999999999999998
Q ss_pred CCC
Q psy5859 79 GDK 81 (93)
Q Consensus 79 ~~~ 81 (93)
..+
T Consensus 469 ~~~ 471 (497)
T KOG0157|consen 469 VGG 471 (497)
T ss_pred cCC
Confidence 876
No 17
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.93 E-value=3.9e-26 Score=157.64 Aligned_cols=81 Identities=31% Similarity=0.626 Sum_probs=72.1
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCC----CCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhcee
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRR----NPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRV 76 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~----~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~ 76 (93)
||+.|.++.+++|+||++|+||++|+||||++++.... ....++|||.|+|.|+|+++|.+|++++++.|+++|++
T Consensus 386 ~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~ 465 (504)
T PLN00110 386 KNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDW 465 (504)
T ss_pred CCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhcee
Confidence 69999999999999999999999999999996532211 13579999999999999999999999999999999999
Q ss_pred ecCCC
Q psy5859 77 LPGDK 81 (93)
Q Consensus 77 ~~~~~ 81 (93)
++.++
T Consensus 466 ~~~~~ 470 (504)
T PLN00110 466 KLPDG 470 (504)
T ss_pred ecCCC
Confidence 98765
No 18
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.93 E-value=4.3e-26 Score=155.41 Aligned_cols=78 Identities=28% Similarity=0.560 Sum_probs=72.0
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|+++.+++|+||++|+||++|+||||++.+. ....++|||.|+|.|+|+++|.+|++++++.|+++|++++.+
T Consensus 351 kG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~---~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~ 427 (452)
T PLN03141 351 KGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM---NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEE 427 (452)
T ss_pred CCCEEEEehHhccCCchhcCCccccCcccccCCCC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCC
Confidence 79999999999999999999999999999997532 356799999999999999999999999999999999999876
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 428 ~ 428 (452)
T PLN03141 428 D 428 (452)
T ss_pred C
Confidence 5
No 19
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.93 E-value=6.4e-26 Score=156.80 Aligned_cols=81 Identities=32% Similarity=0.639 Sum_probs=72.5
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCC-----CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhce
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS-----RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYR 75 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~ 75 (93)
||+.|.++.+++||||++|+||++|+|+||++.... ......++|||.|+|.|+|+++|.+|++++++.||++|+
T Consensus 394 ~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~ 473 (517)
T PLN02687 394 KGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFD 473 (517)
T ss_pred CCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999999974321 123457899999999999999999999999999999999
Q ss_pred eecCCC
Q psy5859 76 VLPGDK 81 (93)
Q Consensus 76 ~~~~~~ 81 (93)
+++.++
T Consensus 474 ~~~~~~ 479 (517)
T PLN02687 474 WELADG 479 (517)
T ss_pred eecCCC
Confidence 998765
No 20
>PLN02738 carotene beta-ring hydroxylase
Probab=99.93 E-value=1e-25 Score=159.02 Aligned_cols=81 Identities=27% Similarity=0.658 Sum_probs=72.3
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCC---CCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceee
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEI---SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVL 77 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~---~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~ 77 (93)
|||.|.++.|.+||||++|+||++|+||||+.... .......++|||.|+|.|+|++||++|++++++.|+++|+|+
T Consensus 486 kGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~e 565 (633)
T PLN02738 486 RGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQ 565 (633)
T ss_pred CCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeE
Confidence 69999999999999999999999999999985321 122456799999999999999999999999999999999999
Q ss_pred cCCC
Q psy5859 78 PGDK 81 (93)
Q Consensus 78 ~~~~ 81 (93)
+.++
T Consensus 566 l~~~ 569 (633)
T PLN02738 566 LAPG 569 (633)
T ss_pred eCCC
Confidence 8765
No 21
>PLN02290 cytokinin trans-hydroxylase
Probab=99.93 E-value=1.1e-25 Score=155.38 Aligned_cols=79 Identities=28% Similarity=0.673 Sum_probs=71.5
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecC
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPG 79 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~ 79 (93)
||+.|.++.|++||||++| +||++|+||||++... .....++|||.|+|.|+|+.+|+++++++++.|+++|++++.
T Consensus 411 ~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~--~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~ 488 (516)
T PLN02290 411 KGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF--APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTIS 488 (516)
T ss_pred CCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC--CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeC
Confidence 6999999999999999999 8999999999995321 234579999999999999999999999999999999999987
Q ss_pred CC
Q psy5859 80 DK 81 (93)
Q Consensus 80 ~~ 81 (93)
++
T Consensus 489 ~~ 490 (516)
T PLN02290 489 DN 490 (516)
T ss_pred CC
Confidence 65
No 22
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.93 E-value=1.9e-25 Score=153.30 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=73.6
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|.++.+.+|+||++|++|++|+|+||++..........++|||.|+|.|+|+++|..|++++++.|+++|++++.+
T Consensus 366 ~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~ 445 (472)
T PLN02987 366 KGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAE 445 (472)
T ss_pred CCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECC
Confidence 69999999999999999999999999999997543333456799999999999999999999999999999999999876
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 446 ~ 446 (472)
T PLN02987 446 Q 446 (472)
T ss_pred C
Confidence 5
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.93 E-value=1.8e-25 Score=155.39 Aligned_cols=81 Identities=25% Similarity=0.539 Sum_probs=72.5
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCC------CCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhc
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISR------RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRY 74 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~------~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f 74 (93)
||+.|.++.+++|+||++|++|++|+|+||++.+... .....++|||.|+|.|+|+++|.++++++++.|+++|
T Consensus 411 kGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f 490 (534)
T PLN03018 411 KGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGF 490 (534)
T ss_pred CCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999644321 2356799999999999999999999999999999999
Q ss_pred eeecCCC
Q psy5859 75 RVLPGDK 81 (93)
Q Consensus 75 ~~~~~~~ 81 (93)
++++.++
T Consensus 491 ~~~~~~~ 497 (534)
T PLN03018 491 NWKLHQD 497 (534)
T ss_pred eEEeCCC
Confidence 9998665
No 24
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.92 E-value=1.6e-25 Score=153.18 Aligned_cols=77 Identities=29% Similarity=0.575 Sum_probs=71.6
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|.++.+++||||++|++|++|+||||++.. .+..++|||.|+|.|+|+++|.++++++++.|+++|++++.+
T Consensus 363 kGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~ 438 (463)
T PLN02196 363 KGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVG 438 (463)
T ss_pred CCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcC
Confidence 7999999999999999999999999999999632 356899999999999999999999999999999999999876
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 439 ~ 439 (463)
T PLN02196 439 T 439 (463)
T ss_pred C
Confidence 5
No 25
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.92 E-value=2.2e-25 Score=152.74 Aligned_cols=78 Identities=32% Similarity=0.568 Sum_probs=71.8
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|.++.+++||||++|+||++|+|+||++.. .....++|||.|+|.|+|+++|.+|++++++.|+++|++++.+
T Consensus 387 ~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~---~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~ 463 (490)
T PLN02302 387 KGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT---PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLN 463 (490)
T ss_pred CCCEEEeeHHHhcCCcccCCCccccChhhcCCCC---CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcC
Confidence 7999999999999999999999999999999643 2456799999999999999999999999999999999999875
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 464 ~ 464 (490)
T PLN02302 464 P 464 (490)
T ss_pred C
Confidence 4
No 26
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.92 E-value=2.1e-25 Score=154.04 Aligned_cols=81 Identities=27% Similarity=0.559 Sum_probs=72.1
Q ss_pred CCCEEEEchhhhhcCCCCC-CCCCCCCCCCCCCCCC-CCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeec
Q psy5859 1 MGATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEI-SRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~-~~p~~F~P~R~l~~~~-~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~ 78 (93)
||+.|.++.+++||||++| +||++|+||||+++.. .......++|||.|+|.|+|+++|.+|++++++.|+++|++++
T Consensus 391 ~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~ 470 (502)
T PLN02426 391 KGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEV 470 (502)
T ss_pred CCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEE
Confidence 6999999999999999999 9999999999997432 1234567899999999999999999999999999999999998
Q ss_pred CCC
Q psy5859 79 GDK 81 (93)
Q Consensus 79 ~~~ 81 (93)
.++
T Consensus 471 ~~~ 473 (502)
T PLN02426 471 VGR 473 (502)
T ss_pred ecC
Confidence 643
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=152.15 Aligned_cols=81 Identities=27% Similarity=0.452 Sum_probs=71.4
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCC---C--CCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhce
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS---R--RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYR 75 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~--~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~ 75 (93)
||+.|.++.+++||||++|+||++|+|+||...... . .....++|||.|+|.|+|+++|.++++++++.||++|+
T Consensus 393 kGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~ 472 (514)
T PLN03112 393 AKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFD 472 (514)
T ss_pred CCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhee
Confidence 799999999999999999999999999998653211 1 12457999999999999999999999999999999999
Q ss_pred eecCCC
Q psy5859 76 VLPGDK 81 (93)
Q Consensus 76 ~~~~~~ 81 (93)
+++.++
T Consensus 473 ~~~~~~ 478 (514)
T PLN03112 473 WSPPDG 478 (514)
T ss_pred eecCCC
Confidence 998754
No 28
>PLN02936 epsilon-ring hydroxylase
Probab=99.92 E-value=6.7e-25 Score=150.97 Aligned_cols=81 Identities=32% Similarity=0.646 Sum_probs=72.3
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceee
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS---RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVL 77 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~---~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~ 77 (93)
||+.|.++.+++||||++|+||++|+|+||+..... ......++|||.|+|.|+|+++|+++++++++.|+++|+++
T Consensus 374 ~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~ 453 (489)
T PLN02936 374 AGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLE 453 (489)
T ss_pred CCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEE
Confidence 699999999999999999999999999999964321 11245799999999999999999999999999999999999
Q ss_pred cCCC
Q psy5859 78 PGDK 81 (93)
Q Consensus 78 ~~~~ 81 (93)
++++
T Consensus 454 ~~~~ 457 (489)
T PLN02936 454 LVPD 457 (489)
T ss_pred ecCC
Confidence 8765
No 29
>KOG0159|consensus
Probab=99.90 E-value=4.7e-24 Score=145.71 Aligned_cols=81 Identities=33% Similarity=0.642 Sum_probs=76.2
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
|||.|.++.+.+.+||++|++|++|+|+||++++....++..++|||.|+|+|+|+++|.+||.++|++++++|+++...
T Consensus 413 agT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~ 492 (519)
T KOG0159|consen 413 AGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLH 492 (519)
T ss_pred CCCeEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecC
Confidence 79999999999999999999999999999999875556888999999999999999999999999999999999999877
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 493 ~ 493 (519)
T KOG0159|consen 493 E 493 (519)
T ss_pred C
Confidence 4
No 30
>KOG0684|consensus
Probab=99.90 E-value=4.4e-24 Score=143.84 Aligned_cols=81 Identities=33% Similarity=0.621 Sum_probs=73.2
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCC-----CCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhce
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISR-----RNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYR 75 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~-----~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~ 75 (93)
+|..|.++...+|+||++|++|+.|+|+||++++.+. .-++.++|||+|+|.|||+.||.+|++.++..+|++|+
T Consensus 374 ~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fd 453 (486)
T KOG0684|consen 374 KGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFD 453 (486)
T ss_pred CCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcc
Confidence 6889999999999999999999999999999766554 12445699999999999999999999999999999999
Q ss_pred eecCCC
Q psy5859 76 VLPGDK 81 (93)
Q Consensus 76 ~~~~~~ 81 (93)
+++.++
T Consensus 454 leLid~ 459 (486)
T KOG0684|consen 454 LELIDG 459 (486)
T ss_pred eeecCC
Confidence 999885
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=2.5e-22 Score=136.07 Aligned_cols=72 Identities=40% Similarity=0.736 Sum_probs=68.1
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCC
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
||+.|+++++++||||++|++|++|+|+||. ..+++||.|.|.|+|..||++|++++++.++++|++....
T Consensus 316 ~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~---------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~ 386 (411)
T COG2124 316 AGTVVLLSIGAANRDPEVFPDPDEFDPERFN---------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLA 386 (411)
T ss_pred CCCEEEecHhhhcCChhhCCChhhcCCCCCC---------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcC
Confidence 7999999999999999999999999999996 5799999999999999999999999999999999988765
Q ss_pred C
Q psy5859 81 K 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 387 ~ 387 (411)
T COG2124 387 E 387 (411)
T ss_pred C
Confidence 4
No 32
>PLN02648 allene oxide synthase
Probab=99.87 E-value=4.8e-22 Score=136.96 Aligned_cols=79 Identities=24% Similarity=0.470 Sum_probs=67.5
Q ss_pred CCCEEEEchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCceecc---------cCCCCCcccHHHHHHHHHHHHHHHH
Q psy5859 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPF---------SSGPRNCVGSKYGMLQMKTTLSTLL 71 (93)
Q Consensus 1 ~G~~v~~~~~~~~~~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~f---------g~G~~~C~G~~~a~~~~~~~l~~ll 71 (93)
||+.|+++.+.+||||++|+||++|+|+||++++... ...+++| |.|+|.|+|+.||.+|++++++.|+
T Consensus 374 kG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~--~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll 451 (480)
T PLN02648 374 KGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK--LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELF 451 (480)
T ss_pred CCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc--cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998643221 2234444 6678999999999999999999999
Q ss_pred Hhce-eecCCC
Q psy5859 72 RRYR-VLPGDK 81 (93)
Q Consensus 72 ~~f~-~~~~~~ 81 (93)
++|+ |++.++
T Consensus 452 ~~f~~~~l~~~ 462 (480)
T PLN02648 452 LRYDSFEIEVD 462 (480)
T ss_pred HHhCEEeecCC
Confidence 9998 998776
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=79.10 E-value=1.7 Score=22.04 Aligned_cols=9 Identities=56% Similarity=1.154 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q psy5859 25 FDPDRFLPS 33 (93)
Q Consensus 25 F~P~R~l~~ 33 (93)
-||||||..
T Consensus 43 PDPERWLP~ 51 (59)
T PF08492_consen 43 PDPERWLPK 51 (59)
T ss_pred CCccccCch
Confidence 478999853
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=77.59 E-value=2.4 Score=25.30 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=16.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHh
Q psy5859 51 RNCVGSKYGMLQMKTTLSTLLRR 73 (93)
Q Consensus 51 ~~C~G~~~a~~~~~~~l~~ll~~ 73 (93)
-.|.|+.||..++-.+++.|+..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 36999999999999999999864
No 35
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=68.01 E-value=3.6 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhceeecCC
Q psy5859 61 LQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 61 ~~~~~~l~~ll~~f~~~~~~ 80 (93)
..|+-+++++|+-|||+|.+
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 45778899999999999875
No 36
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=56.24 E-value=14 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=16.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHH
Q psy5859 50 PRNCVGSKYGMLQMKTTLSTLL 71 (93)
Q Consensus 50 ~~~C~G~~~a~~~~~~~l~~ll 71 (93)
.|.|||..++....+.++..|-
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHT
T ss_pred CCcCccHHHHHHHHHHHHHHcC
Confidence 4789999999999988877763
No 37
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=53.41 E-value=5.9 Score=17.12 Aligned_cols=6 Identities=50% Similarity=1.315 Sum_probs=3.6
Q ss_pred CCCCCC
Q psy5859 25 FDPDRF 30 (93)
Q Consensus 25 F~P~R~ 30 (93)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 38
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=53.40 E-value=5.9 Score=16.50 Aligned_cols=6 Identities=50% Similarity=1.315 Sum_probs=3.3
Q ss_pred CCCCCC
Q psy5859 25 FDPDRF 30 (93)
Q Consensus 25 F~P~R~ 30 (93)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 39
>KOG3506|consensus
Probab=41.60 E-value=13 Score=18.56 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=8.2
Q ss_pred cccCCCCCcc
Q psy5859 45 PFSSGPRNCV 54 (93)
Q Consensus 45 ~fg~G~~~C~ 54 (93)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 5899998875
No 40
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=39.43 E-value=10 Score=23.67 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCC-CCCCCCceecccCCCCCcccHH
Q psy5859 23 HCFDPDRFLPSEI-SRRNPNAYLPFSSGPRNCVGSK 57 (93)
Q Consensus 23 ~~F~P~R~l~~~~-~~~~~~~~~~fg~G~~~C~G~~ 57 (93)
.+|||++|-.--. -..++...+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 3789999842110 1125667889999999999864
No 41
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=37.59 E-value=8.5 Score=16.20 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=3.9
Q ss_pred CCCCCCC
Q psy5859 25 FDPDRFL 31 (93)
Q Consensus 25 F~P~R~l 31 (93)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 3566663
No 42
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.76 E-value=24 Score=21.81 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCccc-HHH--HHHHHHHHHHHHHHhceeec
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVG-SKY--GMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G-~~~--a~~~~~~~l~~ll~~f~~~~ 78 (93)
-+|+|++|-.--.. ..+....+-|+.|+=.|.| +.. |..-+ --++.+|+++.++.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~-~~i~~~L~~~g~~~ 87 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAA-RKYARIIQKLGFPA 87 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHH-HHHHHHHHHcCCCC
Confidence 58899988421111 1244567889999999998 322 22222 23346677766554
No 43
>PLN00062 TATA-box-binding protein; Provisional
Probab=33.30 E-value=43 Score=20.84 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCcccH-HHHHH-HHHHHHHHHHHhcee
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVGS-KYGML-QMKTTLSTLLRRYRV 76 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G~-~~a~~-~~~~~l~~ll~~f~~ 76 (93)
-+|+|++|-.--.. ..+....+-|+.|+=.|.|- ..... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 58999998421111 12445688999999999984 23222 122334466776665
No 44
>PHA03162 hypothetical protein; Provisional
Probab=32.01 E-value=31 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=18.1
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHH
Q psy5859 47 SSGPRNCVGSKYGMLQMKTTLSTL 70 (93)
Q Consensus 47 g~G~~~C~G~~~a~~~~~~~l~~l 70 (93)
+.|.+.||++....-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 358899999988777776666655
No 45
>KOG3302|consensus
Probab=31.58 E-value=21 Score=22.62 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCccc
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVG 55 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G 55 (93)
.+|+|.||..--.. ..+.....-|+.|.=.|.|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 47899998531111 1134456778999999986
No 46
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=30.67 E-value=57 Score=14.21 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=11.2
Q ss_pred CCceecccCCCCCcc
Q psy5859 40 PNAYLPFSSGPRNCV 54 (93)
Q Consensus 40 ~~~~~~fg~G~~~C~ 54 (93)
...++++.+-.|.|.
T Consensus 17 ~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 17 DNTYQPYDGPRRFCR 31 (31)
T ss_pred CCcEeCCCCccccCc
Confidence 456888887777784
No 47
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=28.79 E-value=16 Score=22.54 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCcccHH---HHHHHHHHHHHHHHHhceeec
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVGSK---YGMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G~~---~a~~~~~~~l~~ll~~f~~~~ 78 (93)
-+|+|+||-.--.. ..+....+-|+.|+=.|.|-. -|..-++. ++.+|++..+..
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVKE-IIKKLKDYGIKV 87 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHHHH-HHHHHHhcCCCc
Confidence 48999998431111 124567889999999999752 22222222 344566655543
No 48
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=28.00 E-value=13 Score=19.84 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q psy5859 14 RDPRHWSNPHCFDPDRFLP 32 (93)
Q Consensus 14 ~~~~~~~~p~~F~P~R~l~ 32 (93)
.|+.+-|+.+.|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4566667778899999985
No 49
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=27.83 E-value=93 Score=16.22 Aligned_cols=24 Identities=4% Similarity=0.070 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhceeecCC
Q psy5859 57 KYGMLQMKTTLSTLLRRYRVLPGD 80 (93)
Q Consensus 57 ~~a~~~~~~~l~~ll~~f~~~~~~ 80 (93)
.++...+++.++++++...++...
T Consensus 2 ~~~~~ll~~~Vaqil~~~Gf~~~~ 25 (77)
T smart00576 2 ELAFALLRIAVAQILESAGFDSFQ 25 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 466778888889998887766544
No 50
>KOG2376|consensus
Probab=27.63 E-value=37 Score=25.37 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy5859 15 DPRHWSNPHCFDPDRFLPS 33 (93)
Q Consensus 15 ~~~~~~~p~~F~P~R~l~~ 33 (93)
.|..|...-.=||||||..
T Consensus 571 ~pknyn~~~tPDPERWLP~ 589 (652)
T KOG2376|consen 571 LPKNYNPKVTPDPERWLPR 589 (652)
T ss_pred CcccCCCCCCCChhhcccc
Confidence 3444422223346777753
No 51
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=26.52 E-value=36 Score=17.87 Aligned_cols=14 Identities=36% Similarity=0.759 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCC
Q psy5859 17 RHWSNPHCFDPDRF 30 (93)
Q Consensus 17 ~~~~~p~~F~P~R~ 30 (93)
+--.||..|||+=|
T Consensus 28 ~~s~dp~~fn~~If 41 (69)
T PF11297_consen 28 GGSDDPNVFNPDIF 41 (69)
T ss_pred CCCCCccccCcccc
Confidence 33467888888765
No 52
>PRK11901 hypothetical protein; Reviewed
Probab=25.03 E-value=2.4e+02 Score=19.53 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCC
Q psy5859 23 HCFDPDRFLPSE 34 (93)
Q Consensus 23 ~~F~P~R~l~~~ 34 (93)
|||+||.=|+.+
T Consensus 2 DEfkpe~elkPD 13 (327)
T PRK11901 2 DEFKPEDELKPD 13 (327)
T ss_pred CcCCcccccCCC
Confidence 467777666544
No 53
>PRK00394 transcription factor; Reviewed
Probab=24.86 E-value=23 Score=21.97 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCccc
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVG 55 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G 55 (93)
-+|+|+||-.--.. ..+....+-|..|+=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 48999998431111 1245678899999999988
No 54
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=23.53 E-value=90 Score=19.21 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCC-CCCCCceecccCCCCCcccH-HH--HHHHHHHHHHHHHHhceeec
Q psy5859 23 HCFDPDRFLPSEIS-RRNPNAYLPFSSGPRNCVGS-KY--GMLQMKTTLSTLLRRYRVLP 78 (93)
Q Consensus 23 ~~F~P~R~l~~~~~-~~~~~~~~~fg~G~~~C~G~-~~--a~~~~~~~l~~ll~~f~~~~ 78 (93)
-+|+|+||-.--.. ..+....+-|+.|+=.|.|- .. |...++. +..+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCCc
Confidence 47889888431111 12456788999999999983 22 3333332 345566666544
No 55
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.42 E-value=57 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.0
Q ss_pred CCceecccCCCCCcccHHHHHHHHHH
Q psy5859 40 PNAYLPFSSGPRNCVGSKYGMLQMKT 65 (93)
Q Consensus 40 ~~~~~~fg~G~~~C~G~~~a~~~~~~ 65 (93)
....+-.|.|+.-|+|+.||...+.+
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~ 64 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLAST 64 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHcc
Confidence 44677889999999999999876643
No 56
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=22.18 E-value=42 Score=16.71 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=8.2
Q ss_pred cccCCCCCcc
Q psy5859 45 PFSSGPRNCV 54 (93)
Q Consensus 45 ~fg~G~~~C~ 54 (93)
.||-|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 4888999886
No 57
>KOG2316|consensus
Probab=20.95 E-value=1.1e+02 Score=20.09 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=30.9
Q ss_pred eecccCCCCCcccHHHHHHHHHHHHHHHHHhceeecCCCCCCcccc
Q psy5859 43 YLPFSSGPRNCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDV 88 (93)
Q Consensus 43 ~~~fg~G~~~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~ 88 (93)
..+-|.| +.|+|+.++.++-.+ -.+-..|.+.+..+++.-+.+
T Consensus 164 VAAigL~-~khLgksL~em~p~L--~~l~~ky~vh~CGEGGEyET~ 206 (277)
T KOG2316|consen 164 VAAIGLG-RKHLGKSLDEMQPYL--LKLNDKYGVHVCGEGGEYETF 206 (277)
T ss_pred EeecccC-hhhhCcCHHHHHHHH--HHhhhhhCceecCCCcceeEE
Confidence 3566777 889999998877654 466678888887765555443
No 58
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=20.31 E-value=1.2e+02 Score=19.44 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHH
Q psy5859 49 GPRNCVGSKYGMLQMKTTLSTL 70 (93)
Q Consensus 49 G~~~C~G~~~a~~~~~~~l~~l 70 (93)
-.|.|||..+......++.-.|
T Consensus 22 HGH~cPg~~lG~r~~~iA~e~L 43 (206)
T COG2191 22 HGHLCPGLALGYRMALIAMEEL 43 (206)
T ss_pred cCcCCCchHHHHHHHHHHHHHc
Confidence 3689999998888776655443
No 59
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=20.21 E-value=38 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.3
Q ss_pred CCCceecccCCCCCcccH
Q psy5859 39 NPNAYLPFSSGPRNCVGS 56 (93)
Q Consensus 39 ~~~~~~~fg~G~~~C~G~ 56 (93)
.....+|||.|.-+|++-
T Consensus 103 ~gss~~p~GaGaAaC~aA 120 (131)
T PF14459_consen 103 CGSSNNPFGAGAAACFAA 120 (131)
T ss_pred cCcccCCcCccHHHHHHH
Confidence 345678999999999874
Done!