RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5859
(93 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 101 bits (253), Expect = 7e-27
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +Y +HRDP + NP FDP+RFL R A+LPF +GPRNC+G + +
Sbjct: 359 GTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARM 418
Query: 62 QMKTTLSTLLRRYRVLP 78
+MK L+TLL+ + V
Sbjct: 419 EMKLFLATLLQNFEVEL 435
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 79.8 bits (197), Expect = 3e-19
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G V I +RDP + +P FDP+RF NA+LPF GP C+G+
Sbjct: 316 AGTVVLLSIGAANRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALAR 366
Query: 61 LQMKTTLSTLLRRYRVL 77
L++K L+ LLRR+ +L
Sbjct: 367 LELKVALAELLRRFPLL 383
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 62.1 bits (151), Expect = 7e-13
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 9 IYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNA------YLPFSSGPRNCVGSKYGMLQ 62
+Y IHR P W F P+RF ++ PN Y+PFS GPR CVG ++ +L+
Sbjct: 382 VYNIHRSPEVWERAEEFVPERF---DLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLE 438
Query: 63 MKTTLSTLLRR 73
L+ LL+R
Sbjct: 439 AIVALAVLLQR 449
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 61.7 bits (150), Expect = 1e-12
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 10 YQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLST 69
Y + R+ +++ NP FDP RFL + + +A++PFS GPRNCVG ++ ++ S
Sbjct: 390 YSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSN 445
Query: 70 LLRRYRV 76
++ +++
Sbjct: 446 IILNFKL 452
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 57.6 bits (139), Expect = 3e-11
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 9 IYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPN------AYLPFSSGPRNCVGSKYGMLQ 62
++ +HR P+HW + F+P+R+ + NPN +YLPF GPR CVG + +
Sbjct: 494 VWNLHRSPKHWDDAEKFNPERW---PLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFE 550
Query: 63 MKTTLSTLLRRY 74
+ L+RR+
Sbjct: 551 NVVATAMLVRRF 562
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 56.7 bits (137), Expect = 6e-11
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 12 IHRDPRHW-SNPHCFDPDRFLPSEISRRNPNA--YLPFSSGPRNCVGSKYGMLQMKTTLS 68
IH W + + F+PDRF R ++PF++GPRNC+G + M++ K L+
Sbjct: 422 IHHSEELWGKDANEFNPDRF----AGRPFAPGRHFIPFAAGPRNCIGQAFAMMEAKIILA 477
Query: 69 TLLRRYRVLPGDKCR 83
L+ ++ D R
Sbjct: 478 MLISKFSFTISDNYR 492
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 52.9 bits (127), Expect = 1e-09
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNA----YLPFSSGPRNCVGSK 57
++ I+ I RDP W NP F P+RFL + ++ +P +PF +G R C G++
Sbjct: 387 NTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTR 446
Query: 58 YGMLQMKTTLSTLLRRY 74
G++ ++ L TL+ +
Sbjct: 447 MGIVLVEYILGTLVHSF 463
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 49.0 bits (117), Expect = 3e-08
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G +A IY + D + W NP +DP+RFL + + + F +G R C GS ML
Sbjct: 359 GTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAML 418
Query: 62 QMKTTLSTLLRR--YRVLPGD 80
++ L++ +R+ GD
Sbjct: 419 IACMAIARLVQEFEWRLREGD 439
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 48.4 bits (115), Expect = 5e-08
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V IH +S+P FDP RF E++ + PN ++PF +G +C G++ L
Sbjct: 364 GWKVLPLFRNIHHSADIFSDPGKFDPSRF---EVAPK-PNTFMPFGNGTHSCPGNELAKL 419
Query: 62 QMKTTLSTLLRRYR 75
++ + L +YR
Sbjct: 420 EISVLIHHLTTKYR 433
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 47.5 bits (113), Expect = 9e-08
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLP----SEISRRNPNAYL-PFSSGPRNCVGS 56
GAT+ ++ I RDP W +P F PDRFLP + + + + L PF +G R C G
Sbjct: 395 GATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGL 454
Query: 57 KYGMLQMKTTLSTLL 71
+G L+M T L+ L
Sbjct: 455 SWG-LRMVTLLTATL 468
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 46.6 bits (111), Expect = 2e-07
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A+ Q+H DP + NP FDP R+ +LPF G R C G+ L
Sbjct: 388 GWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPK---AGTFLPFGLGSRLCPGNDLAKL 444
Query: 62 QMKTTLSTLLRRYRVLP 78
++ L L YR+
Sbjct: 445 EISIFLHHFLLGYRLER 461
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 46.4 bits (110), Expect = 3e-07
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 10 YQIHRDPRHWSNPHCFDPDRFLPSEIS--RRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
+ I RD W +P F P RFL + + + ++PF SG R+C G + G+ + +
Sbjct: 409 WAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAV 468
Query: 68 STLL 71
+ LL
Sbjct: 469 AHLL 472
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 46.3 bits (109), Expect = 3e-07
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 2 GATVAAFIYQIHRDPRHWS-NPHCFDPDRFLPSEISRRNPN-AYLPFSSGPRNCVGSKYG 59
G TV + + RD + W NP F P+RFL E+ + + ++PF SG R C G + G
Sbjct: 389 GTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLG 448
Query: 60 MLQMKTTLSTLLRRY 74
++ + LL +
Sbjct: 449 AAMLEVPYANLLLNF 463
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 45.4 bits (107), Expect = 5e-07
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLP--SEIS-RRNPNAYLPFSSGPRNCVGSKY 58
G+ V Y + R+P+ WS+P F P+R L SE++ N ++ FS+G R C
Sbjct: 425 GSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPAL 484
Query: 59 GMLQMKTTLSTLLRRYR-VLPGDKCR 83
G L+ LL+ ++ L G + R
Sbjct: 485 GTAITTMMLARLLQGFKWKLAGSETR 510
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 45.1 bits (107), Expect = 6e-07
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 15 DPRHWSNPHCFDPDRFLPSEISRRNPNA---YLPFSSGPRNCVGSKYGMLQMKTTLSTLL 71
+P W NP F P+RFL E +LPF G R+C G + + L L+
Sbjct: 404 NPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLV 463
Query: 72 RRYRVLP 78
+ + +LP
Sbjct: 464 QNFELLP 470
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 44.2 bits (104), Expect = 1e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPS------EISRRNPNAYLPFSSGPRNCVG 55
GATV + ++ RD R W P F P+RFL +++ +PF G R C G
Sbjct: 405 GATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAG 464
Query: 56 SKYGMLQMKTTLSTLLRRY--RVLPGDKCRSVEDVRF 90
ML ++ ++ ++R + + +PGD+ E F
Sbjct: 465 LGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREF 501
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 41.5 bits (97), Expect = 1e-05
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 9 IYQIHRDPRHWSNPHC-FDPDRFLPSEISRRNPNAY--LPFSSGPRNCVGSKYGMLQMKT 65
IY + R W F P+R++ R+ +Y + F+SGPR C+G +LQMK
Sbjct: 400 IYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKI 459
Query: 66 TLSTLLRRY--RVLPGDKCRSVEDV 88
+++ Y +V+ G K ++ +
Sbjct: 460 VALEIIKNYDFKVIEGHKIEAIPSI 484
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 41.0 bits (96), Expect = 2e-05
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFL-------PSEISRRNPNAYLPFSSGPRNCV 54
G V I +H D + P F+P R+ S S N ++PF GPR C
Sbjct: 381 GWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCA 440
Query: 55 GSKYGMLQMKTTLSTLLRRYR 75
GS+ L+M + L+ +
Sbjct: 441 GSELAKLEMAVFIHHLVLNFN 461
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 40.6 bits (95), Expect = 3e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 9 IYQIHRDPRHWSNPHCFDPDRFLPSEISR----RNPN-AYLPFSSGPRNCVGSKYGMLQM 63
+ + R+ + W + F P+R P+E SR P+ LPFS+G R C G+ G+ +
Sbjct: 401 THGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMV 460
Query: 64 KTTLSTLL 71
L+ L
Sbjct: 461 LMALARLF 468
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 40.3 bits (94), Expect = 3e-05
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A +H D ++ + F+P R+ + + N + PF GPR C G + +
Sbjct: 367 GWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARV 426
Query: 62 QMKTTLSTLLRRYRVLPGDK 81
+ L L+ R+ +P ++
Sbjct: 427 ALSVFLHRLVTRFSWVPAEQ 446
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 39.2 bits (91), Expect = 6e-05
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 14 RDPRHWSNPHCFDPDRFLPSE-ISRR-----NPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
R+P+ W +P ++P+R L + I++ ++ FS+G R CVG K G + M L
Sbjct: 424 RNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMML 483
Query: 68 STLLRRY 74
+ L+ +
Sbjct: 484 ARFLQGF 490
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 39.0 bits (91), Expect = 9e-05
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 11 QIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTL 70
+I+ DP + +P F+P R+L + S + N + F G R C G + G++++ T L
Sbjct: 373 EINYDPFLYPDPMTFNPWRWL--DKSLESHNYFFLFGGGTRLCPGKELGIVEISTFLHYF 430
Query: 71 LRRYR 75
+ RYR
Sbjct: 431 VTRYR 435
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 38.2 bits (89), Expect = 1e-04
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 2 GATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEISRR-NPNAYLPFSSGPRNCVGSKYG 59
G V Y + R +W + F P+R++ + + +P + F +GPR C+G
Sbjct: 410 GGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSA 469
Query: 60 MLQMKTTLSTLLR--RYRVLPG 79
LQMK L+ L R +++++PG
Sbjct: 470 YLQMKMALALLCRFFKFQLVPG 491
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 37.4 bits (87), Expect = 3e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHC--FDPDRFLPS-EISRRNPNAYLPFSSGPRNCVGSKY 58
G V Y + R R W P C F P+R+L + NP Y F +G R C+G +
Sbjct: 392 GTRVTYHPYAMGRMERIWG-PDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEM 450
Query: 59 GMLQMKTTLSTLLRRYRV 76
+++MK+ ++RR+ +
Sbjct: 451 ALMEMKSVAVAVVRRFDI 468
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 37.0 bits (86), Expect = 4e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A+ +H D ++ NP+ F+P R+ ++ N +++ PF G R C G L
Sbjct: 352 GWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM---NNSSFTPFGGGQRLCPGLDLARL 408
Query: 62 QMKTTLSTLLRRYR 75
+ L L+ R+R
Sbjct: 409 EASIFLHHLVTRFR 422
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 32.0 bits (72), Expect = 0.024
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 10 YQIHRDPRHW-SNPHCFDPDRFLPSEIS---RRNPNAYLPFSSGPRNCVGSKYGMLQMKT 65
+ + RD W NP+ F P+RF+ + LPF SG R C G+ ++
Sbjct: 394 WAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEI 453
Query: 66 TLSTLLRRY 74
+ LL ++
Sbjct: 454 PFANLLYKF 462
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed.
Length = 179
Score = 27.9 bits (63), Expect = 0.49
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 25 FDPDRFLPSEISR-RNPN-AYLPFSSGPRNCVGSK 57
++P++F P + R +P A L F SG C G+K
Sbjct: 30 YNPEQF-PGLVYRLEDPKIAALIFRSGKVVCTGAK 63
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of
TFIID and TFIIIB [Transcription].
Length = 185
Score = 27.7 bits (62), Expect = 0.63
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 25 FDPDRFLPSEISR-RNPN-AYLPFSSGPRNCVGSK 57
++P++F P + R P A L F SG C G+K
Sbjct: 37 YNPEQF-PGLVYRLEEPKTAALIFRSGKVVCTGAK 70
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in
archaea and eukaryotes, TBPs are transcription factors
that recognize promoters and initiate transcription.
TBP has been shown to be an essential component of
three different transcription initiation complexes:
SL1, TFIID and TFIIIB, directing transcription by RNA
polymerases I, II and III, respectively. TBP binds
directly to the TATA box promoter element, where it
nucleates polymerase assembly, thus defining the
transcription start site. TBP's binding in the minor
groove induces a dramatic DNA bending while its own
structure barely changes. The conserved core domain of
TBP, which binds to the TATA box, has a bipartite
structure, with intramolecular symmetry generating a
saddle-shaped structure that sits astride the DNA. New
members of the TBP family, called TBP-like proteins
(TBLP, TLF, TLP) or TBP-related factors (TRF1,
TRF2,TRP), are similar to the core domain of TBPs, with
identical or chemically similar amino acids at many
equivalent positions, suggesting similar structure.
However, TLFs contain distinct, conserved amino acids
at several positions that distinguish them from TBP.
Length = 174
Score = 27.1 bits (61), Expect = 0.91
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 25 FDPDRFLPSEISR-RNPNAY-LPFSSGPRNCVGSK 57
++P RF P I R R P L FSSG G+K
Sbjct: 31 YNPKRF-PGVIMRLREPKTTALIFSSGKMVITGAK 64
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 27.2 bits (61), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 14 RDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGP 50
RDP+ + P F PDRF+ E + + +S+G
Sbjct: 387 RDPKVFDRPEEFVPDRFMGEEGEKLLKYVF--WSNGR 421
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP):
TBPs are transcription factors present in archaea and
eukaryotes, that recognize promoters and initiate
transcription. TBP has been shown to be an essential
component of three different transcription initiation
complexes: SL1, TFIID and TFIIIB, directing
transcription by RNA polymerases I, II and III,
respectively. TBP binds directly to the TATA box
promoter element, where it nucleates polymerase
assembly, thus defining the transcription start site.
TBP's binding in the minor groove induces a dramatic
DNA bending while its own structure barely changes. The
conserved core domain of TBP, which binds to the TATA
box, has a bipartite structure, with intramolecular
symmetry generating a saddle-shaped structure that sits
astride the DNA.
Length = 174
Score = 26.8 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 25 FDPDRFLPSEISRRNPN--AYLPFSSGPRNCVGSK 57
++PD+F P + R A L F SG C G+K
Sbjct: 31 YNPDQF-PGLVYRLEDPKIAALIFRSGKMVCTGAK 64
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 26.8 bits (60), Expect = 1.5
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 1 MGATVAAFI---YQIHRDPRHWSNPHCFDPDRFLPS 33
MGA A++ + +P NP + DRF+ S
Sbjct: 33 MGAADIAYVLWTRFLKHNP---DNPKWINRDRFVLS 65
>gnl|CDD|201127 pfam00273, Serum_albumin, Serum albumin family.
Length = 178
Score = 26.5 bits (59), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 26 DPDRFLPS---EISRRNPNAYLPF 46
DPD+FL E SRR+P+ Y+P
Sbjct: 130 DPDKFLGRFLYEYSRRHPDLYVPE 153
>gnl|CDD|237982 cd00015, ALBUMIN, Albumin domain, contains five or six internal
disulphide bonds; albuminoid superfamily includes
alpha-fetoprotein which binds various cations, fatty
acids and bilirubin; vitamin D-binding protein which
binds to vitamin D, its metabolites, and fatty acids;
alpha-albumin which binds water, cations (such as Ca2+,
Na+ and K+), fatty acids, hormones, bilirubin and drugs;
and afamin of which little is known; these belong to a
multigene family with highly conserved intron/exon
organization and encoded protein structures;
evolutionary comparisons strongly support vitamin
D-binding protein as the original gene in this group
with subsequent local duplications generating the
remaining genes in the cluster.
Length = 185
Score = 25.0 bits (55), Expect = 6.2
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 28 DRFLPSEISRRNPNAYLP 45
RFL E SRR+P +P
Sbjct: 136 GRFLY-EYSRRHPELSVP 152
>gnl|CDD|183181 PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR;
Provisional.
Length = 224
Score = 24.9 bits (54), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 55 GSKYGMLQMKTTLSTLLRRYRVL 77
GS Y +LQM+ L L RYR +
Sbjct: 147 GSHY-LLQMRERLFDLAARYRFI 168
>gnl|CDD|214517 smart00103, ALBUMIN, serum albumin.
Length = 187
Score = 24.6 bits (54), Expect = 8.5
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 28 DRFLPSEISRRNPNAYLPF 46
+FL E+SRR+P P
Sbjct: 143 GKFLY-ELSRRHPELSEPQ 160
>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine
modification protein; Provisional.
Length = 190
Score = 24.7 bits (54), Expect = 9.0
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 82 CRSVEDVRFEFG 93
CR+VE+VR +FG
Sbjct: 148 CRTVEEVRAQFG 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.458
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,874,163
Number of extensions: 378789
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 42
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)