RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5859
(93 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 118 bits (299), Expect = 1e-33
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
+ Y + R ++ +P F+PDRF P + Y PFS G R+C+G ++ +
Sbjct: 340 NTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHRSCIGQQFAQM 397
Query: 62 QMKTTLSTLLRRYRVLP 78
++K ++ LL+R
Sbjct: 398 EVKVVMAKLLQRLEFRL 414
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 117 bits (295), Expect = 5e-33
Identities = 24/75 (32%), Positives = 34/75 (45%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V R W F+PDR+L + AY+PF +G C+G + +
Sbjct: 350 GHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYV 409
Query: 62 QMKTTLSTLLRRYRV 76
Q+KT ST+LR Y
Sbjct: 410 QIKTIWSTMLRLYEF 424
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 117 bits (294), Expect = 7e-33
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
GA + Y I RDP+ + + FDPDR+LP + A PFS+G R C + M
Sbjct: 359 GADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMA 418
Query: 62 QMKTTLSTLLRRYRVLP 78
Q+ + L +YR
Sbjct: 419 QLTLITAALATKYRFEQ 435
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 116 bits (293), Expect = 1e-32
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + I ++HR + P+ F + F + PF GPR C G M+
Sbjct: 391 GTNIILNIGRMHR-LEFFPKPNEFTLENFAK----NVPYRYFQPFGFGPRGCAGKYIAMV 445
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
MK L TLLRR+ V + + VE ++
Sbjct: 446 MMKAILVTLLRRFHVKT-LQGQCVESIQKIHD 476
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 113 bits (285), Expect = 2e-31
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 9 IYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLS 68
Y +HRDP++W+ P F P+RF +P Y PF SGPRNC+G ++ ++ MK L
Sbjct: 376 SYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALI 435
Query: 69 TLLRRYRVLPGDK 81
+L+ + P +
Sbjct: 436 RVLQNFSFKPCKE 448
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 109 bits (275), Expect = 3e-30
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G +A H D + P +DP+R + A++ F +G C+G K+G+L
Sbjct: 350 GDIIACSPLLSHHDEEAFPEPRRWDPERDE------KVEGAFIGFGAGVHKCIGQKFGLL 403
Query: 62 QMKTTLSTLLRRYRV 76
Q+KT L+T R Y
Sbjct: 404 QVKTILATAFRSYDF 418
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 107 bits (270), Expect = 1e-29
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEI-SRRNPNAYLPFSSGPRNCVGSKYGM 60
G VAA +R P + +PH F P R+ N ++PF +G CVG+ + +
Sbjct: 342 GDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAI 401
Query: 61 LQMKTTLSTLLRRYRV 76
+Q+K S LLR Y
Sbjct: 402 MQIKAIFSVLLREYEF 417
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 106 bits (268), Expect = 4e-29
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 2 GATVAAFIYQIHRDPRHW-SNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G + I Q+HRD W + F P+RF +A+ PF +G R C+G ++ +
Sbjct: 350 GDELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNGQRACIGQQFAL 407
Query: 61 LQMKTTLSTLLRRYRVLP 78
+ L +L+ +
Sbjct: 408 HEATLVLGMMLKHFDFED 425
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 106 bits (267), Expect = 4e-29
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPF-------SSGPRNCV 54
G + + RDP+ + F P+RF+ E + + + G + C
Sbjct: 386 GEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCA 445
Query: 55 GSKYGMLQMKTTLSTLLRRYRVLPGDK 81
G + +L + + + RRY +
Sbjct: 446 GKDFVVLVARLFVIEIFRRYDSFDIEV 472
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 103 bits (260), Expect = 6e-28
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + + ++ + H F P+R+L E + NP A+LPF G R C+G + L
Sbjct: 380 GTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKE-KKINPFAHLPFGIGKRMCIGRRLAEL 438
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRFEF 92
Q+ L ++++Y ++ D E V
Sbjct: 439 QLHLALCWIIQKYDIVATDN----EPVEMLH 465
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 102 bits (257), Expect = 9e-28
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLP-SEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G V+ I Q H DP + +P FDP+RF P + P A++PF G R C+G ++
Sbjct: 339 GWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFAR 398
Query: 61 LQMKTTLSTLLRRYR--VLPGDKCR 83
L+MK + L++++ +LPG
Sbjct: 399 LEMKLFATRLIQQFDWTLLPGQNLE 423
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 102 bits (257), Expect = 1e-27
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V IY + R+P + +P FDP R+L + + L F G R C+G + L
Sbjct: 372 KTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKNI-TYFRNLGFGWGVRQCLGRRIAEL 430
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
+M L +L +RV + + + DV F
Sbjct: 431 EMTIFLINMLENFRV----EIQHLSDVGTTFN 458
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 102 bits (255), Expect = 2e-27
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGP---------RN 52
G + + +DP+ + P + PDRF+ Y+ +S+GP +
Sbjct: 369 GEMLFGYQPFATKDPKVFDRPEEYVPDRFVG---DGEALLKYVWWSNGPETESPTVENKQ 425
Query: 53 CVGSKYGMLQMKTTLSTLLRRYRVLPGDK 81
C G + +L + + L RRY +
Sbjct: 426 CAGKDFVVLITRLFVIELFRRYDSFEIEL 454
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 100 bits (252), Expect = 7e-27
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEIS---------RRNPNAYLPFSSGPRN 52
+A + +H DP + +P F DR+L + Y+PF SG
Sbjct: 367 DDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATI 426
Query: 53 CVGSKYGMLQMKTTLSTLLRRYR 75
C G + + ++K L +L +
Sbjct: 427 CPGRLFAIHEIKQFLILMLSYFE 449
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 99.6 bits (249), Expect = 9e-27
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G T+ Y R + + F P+RFL Y PF G R C+G + +L
Sbjct: 289 GTTLVLSPYVTQRLH--FPDGEAFRPERFLEE--RGTPSGRYFPFGLGQRLCLGRDFALL 344
Query: 62 QMKTTLSTLLRRYRVLPGD 80
+ L RR+R+ P
Sbjct: 345 EGPIVLRAFFRRFRLDPLP 363
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 94.5 bits (235), Expect = 1e-24
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 2 GATVAAF-IYQIHRDPRHWSNPHCFDPDRFLPSE---------ISRRNPNAYLPFSSGPR 51
G + F RDP +++P F +RFL + +R N +P+ +G
Sbjct: 370 GDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHN 429
Query: 52 NCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFE 91
+C+G Y + +K + +L + + + +
Sbjct: 430 HCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLS 469
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 89.8 bits (223), Expect = 6e-23
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGP----RNCVGSK 57
G V +Y + D W++P F P+RF + ++P G C G
Sbjct: 309 GRQVVLDLYGSNHDAATWADPQEFRPERFRA---WDEDSFNFIPQGGGDHYLGHRCPGEW 365
Query: 58 YGMLQMKTTLSTLLRRYR 75
+ MK L+ R
Sbjct: 366 IVLAIMKVAAHLLVNAMR 383
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 88.2 bits (219), Expect = 2e-22
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGP----RNCVGSK 57
G +V +Y + DPR W +P F P+RF N +P G C G
Sbjct: 311 GTSVLLDLYGTNHDPRLWDHPDEFRPERFAE---REENLFDMIPQGGGHAEKGHRCPGEG 367
Query: 58 YGMLQMKTTLSTLLRRYR 75
+ MK +L L+ +
Sbjct: 368 ITIEVMKASLDFLVHQIE 385
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 84.7 bits (210), Expect = 4e-21
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 2 GATVAAF-IYQIHRDPRHWSNPHCFDPDRFLPSEIS---------RRNPNAYLPFSSGPR 51
G + F DP+ P F DRFL ++ + R +P+ +
Sbjct: 351 GDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDN 410
Query: 52 NCVGSKYGMLQMKTTLSTLLRRYRV-LPGDKCRSVEDVRFEFG 93
C G + + +K + T+L R+ V L +G
Sbjct: 411 LCPGRHFAVHAIKELVFTILTRFDVELCDKNATVPLVDPSRYG 453
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 76.1 bits (188), Expect = 5e-18
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G TV +Y +H D ++W +P F P+RFL S A +PFS G R+C+G +
Sbjct: 371 GTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARM 430
Query: 62 QMKTTLSTLLRRYRVLP 78
+M + LL+R+ +
Sbjct: 431 EMFLFFTALLQRFHLHF 447
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 75.7 bits (187), Expect = 6e-18
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G T+ + + +D W P F P+ FL ++ P A+LPFS+G R C+G +
Sbjct: 370 GTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARM 429
Query: 62 QMKTTLSTLLRRYRVLP 78
++ ++LL+ +
Sbjct: 430 ELFLFFTSLLQHFSFSV 446
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 73.8 bits (182), Expect = 3e-17
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSE--ISRRNPNAYLPFSSGPRNCVGSKYG 59
V + ++ DP W NP FDP RFL + I++ + + FS G R C+G +
Sbjct: 377 DTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELS 436
Query: 60 MLQMKTTLSTLLRRY--RVLPGDK 81
+Q+ +S L + R P +
Sbjct: 437 KMQLFLFISILAHQCDFRANPNEP 460
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 73.0 bits (180), Expect = 6e-17
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G T+ + + D + + NP FDP FL + + ++PFS+G R CVG +
Sbjct: 367 GTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGM 426
Query: 62 QMKTTLSTLLRRYRVLP 78
++ L+++L+ + +
Sbjct: 427 ELFLFLTSILQNFNLKS 443
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 71.8 bits (177), Expect = 1e-16
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + + RDP +SNP F+P FL + + +A++PFS G RNC G +
Sbjct: 366 GTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARM 425
Query: 62 QMKTTLSTLLRRYRVLP 78
++ +T+++ +R+
Sbjct: 426 ELFLFFTTVMQNFRLKS 442
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 71.8 bits (177), Expect = 1e-16
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSE---ISRRNPNAYLPFSSGPRNCVGSKY 58
V +Q++ DP W +P F P+RFL ++ I++ + F G R C+G
Sbjct: 380 KCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVL 439
Query: 59 GMLQMKTTLSTLLRRYR 75
++ L+ LL++
Sbjct: 440 AKWEIFLFLAILLQQLE 456
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 71.1 bits (175), Expect = 3e-16
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V + DPR++ P+ F+P FL + + + ++PFS G R C+G
Sbjct: 366 NTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIART 425
Query: 62 QMKTTLSTLLRRYRVLP 78
++ +T+L+ + +
Sbjct: 426 ELFLFFTTILQNFSIAS 442
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 70.6 bits (174), Expect = 4e-16
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + + D + + +P F P+ FL + + + PFS+G R C G +
Sbjct: 365 GTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARM 424
Query: 62 QMKTTLSTLLRRYRVLP 78
++ L +L+ + + P
Sbjct: 425 ELFLLLCAILQHFNLKP 441
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 69.9 bits (172), Expect = 6e-16
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSE--ISRRNPNAYLPFSSGPRNCVG 55
G V ++ +H + + W P F P+RFL +YLPF +GPR+C+G
Sbjct: 371 GTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIG 426
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 68.8 bits (169), Expect = 2e-15
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + H D W PH F PDRFL + + L F G R C+G L
Sbjct: 380 GMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGAN----PSALAFGCGARVCLGESLARL 435
Query: 62 QMKTTLSTLLRRYR--VLPGDKCRSVEDVRFEFG 93
++ L+ LL+ + P S+ G
Sbjct: 436 ELFVVLARLLQAFTLLPPPVGALPSL-QPDPYCG 468
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 50.3 bits (121), Expect = 6e-09
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + HRDPR +++ FD I+ + + F GP C+G+ L
Sbjct: 322 GTPVFMCAHVAHRDPRVFADADRFD--------ITVKREAPSIAFGGGPHFCLGTALARL 373
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRF 90
++ ++ L R + ++ +
Sbjct: 374 ELTEAVAALATRLDPP-----QIAGEITW 397
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 49.9 bits (120), Expect = 8e-09
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + +RDP ++NP FD R+PN +L F G C+GS L
Sbjct: 302 GEQVYLLLGAANRDPSIFTNPDVFDIT---------RSPNPHLSFGHGHHVCLGSSLARL 352
Query: 62 QMKTTLSTLLRRY 74
+ + ++TLL+R
Sbjct: 353 EAQIAINTLLQRM 365
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 48.9 bits (117), Expect = 2e-08
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDR-FLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
V I +RDP + P F+ R L + + +L F SG NCVG+ +
Sbjct: 337 DTIVFCMIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGTAFAK 396
Query: 61 LQMKTTLSTLLRRYRVL 77
+++ + +L + R +
Sbjct: 397 NEIEIVANIVLDKMRNI 413
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 48.8 bits (117), Expect = 2e-08
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + DP + P DR P + G CVG+ +
Sbjct: 301 GDLVYLPSVLHNLDPASFEAPEEVRFDR-------GLAPIRHTTMGVGAHRCVGAGLARM 353
Query: 62 QMKTTLSTLLRR---YRVLPGD 80
++ L L + + P
Sbjct: 354 EVIVFLREWLGGMPEFALAPDK 375
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 48.8 bits (117), Expect = 2e-08
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G T+ + HRDP P FDPD R +L F G C+G+ L
Sbjct: 324 GDTMLLLLAAAHRDPTIVGAPDRFDPD---------RAQIRHLGFGKGAHFCLGAPLARL 374
Query: 62 QMKTTLSTLLRRYRVL 77
+ L L R+
Sbjct: 375 EATVALPALAARFPEA 390
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 48.4 bits (116), Expect = 3e-08
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V I RD +S P FD R+ +A L + GP C G L
Sbjct: 323 GEMVFLLIPSALRDGTVFSRPDVFDVR---------RDTSASLAYGRGPHVCPGVSLARL 373
Query: 62 QMKTTLSTLLRRYRVL 77
+ + + T+ RR+ +
Sbjct: 374 EAEIAVGTIFRRFPEM 389
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 48.0 bits (115), Expect = 3e-08
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
+ A +RD + NP F+ +R + P L F G C+
Sbjct: 309 NEGIIASNQSANRDEEVFENPDEFNMNR-------KWPPQDPLGFGFGDHRCIAEHLAKA 361
Query: 62 QMKTTLSTLLRRYRVLPG 79
++ T STL ++ P
Sbjct: 362 ELTTVFSTLYQK---FPD 376
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 48.0 bits (115), Expect = 3e-08
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + + DP H+ NP + D R NP ++L F G C GS G
Sbjct: 302 GELVLVLLEGANFDPEHFPNPGSIELD--------RPNPTSHLAFGRGQHFCPGSALGRR 353
Query: 62 QMKTTLSTLLRRYRVLPG 79
+ + LL++ +PG
Sbjct: 354 HAQIGIEALLKK---MPG 368
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 47.3 bits (113), Expect = 6e-08
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G+ V A + +RDP + +P D R + F G C+G+
Sbjct: 322 GSRVVALLGSANRDPARFPDPDVLDVH---------RAAERQVGFGLGIHYCLGATLARA 372
Query: 62 QMKTTLSTLLRRY 74
+ + L LL
Sbjct: 373 EAEIGLRALLDGI 385
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 47.2 bits (113), Expect = 7e-08
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V F+ +RDPR W +P +D R + ++ F SG CVG L
Sbjct: 319 GEKVLMFLGSANRDPRRWDDPDRYDI---------TRKTSGHVGFGSGVHMCVGQLVARL 369
Query: 62 QMKTTLSTLLRRYRVL 77
+ + L+ L R+ +
Sbjct: 370 EGEVVLAALARKVAAI 385
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 47.0 bits (112), Expect = 7e-08
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + +RDP ++ P D D R + +
Sbjct: 290 GEEVVVVVAAANRDPEVFAEPDRLDVD---------RPDADRALSAHRGHPGRLEELVTA 340
Query: 62 QMKTTLSTLLRRY 74
L +
Sbjct: 341 LATAALRAAAKAL 353
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 46.8 bits (112), Expect = 8e-08
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G+ + I +RDP + +P FD R + L F GP +C G
Sbjct: 301 GSPIRFMIGAANRDPEVFDDPDVFDHTR-------PPAASRNLSFGLGPHSCAGQIISRA 353
Query: 62 QMKTTLSTLLRRYRVL 77
+ T + L RY +
Sbjct: 354 EATTVFAVLAERYERI 369
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 46.8 bits (112), Expect = 9e-08
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +I +RD + + F PD RNPN +L F SG C+G+ L
Sbjct: 275 GEYVRVWIASANRDEEVFHDGEKFIPD---------RNPNPHLSFGSGIHLCLGAPLARL 325
Query: 62 QMKTTLSTLLRRYRVL 77
+ + + +R+R +
Sbjct: 326 EARIAIEEFSKRFRHI 341
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 46.8 bits (112), Expect = 1e-07
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
+TV +RDP+ + +PH FD R+ +L F G C+G L
Sbjct: 309 YSTVLVANGAANRDPKQFPDPHRFDVT---------RDTRGHLSFGQGIHFCMGRPLAKL 359
Query: 62 QMKTTLSTLLRRY 74
+ + L L R+
Sbjct: 360 EGEVALRALFGRF 372
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 46.5 bits (111), Expect = 1e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +RD + +P D R+ +L F G C+G L
Sbjct: 313 GEGVIVVNSIANRDGTVYEDPDALDIH---------RSARHHLAFGFGVHQCLGQNLARL 363
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ L+ L+ R +P
Sbjct: 364 ELEVILNALMDR---VPT 378
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 46.5 bits (111), Expect = 1e-07
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + D R + P D R ++ F G C+G
Sbjct: 316 GDQILLPQMLSGLDERENACPMHVDFS---------RQKVSHTTFGHGSHLCLGQHLARR 366
Query: 62 QMKTTLSTLLRR---YRVLPGD 80
++ TL L R + + PG
Sbjct: 367 EIIVTLKEWLTRIPDFSIAPGA 388
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 46.5 bits (111), Expect = 1e-07
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V I ++RD + + NP FD RN ++ F G C+G
Sbjct: 311 GDAVLVSITLMNRDAKAYENPDIFDAR---------RNARHHVGFGHGIHQCLGQNLARA 361
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ L L R +PG
Sbjct: 362 ELEIALGGLFAR---IPG 376
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 46.1 bits (110), Expect = 1e-07
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + A +R P + FD R +L F G C+G+ +
Sbjct: 312 GEPILASYAAANRHPDWHEDADTFDAT---------RTVKEHLAFGHGVHFCLGAPLARM 362
Query: 62 QMKTTLSTLLRRY 74
++ L +L R+
Sbjct: 363 EVTLALESLFGRF 375
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 46.1 bits (110), Expect = 2e-07
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G TV + HR P + +PH FD R+ +L F G C+G+ L
Sbjct: 332 GDTVLVVLADAHRTPERFPDPHRFDIR---------RDTAGHLAFGHGIHFCIGAPLARL 382
Query: 62 QMKTTLSTLLRRY 74
+ + + LL R
Sbjct: 383 EARIAVRALLERC 395
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 46.1 bits (110), Expect = 2e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G +V + +RDP + D R P ++ F G +C+G+ L
Sbjct: 305 GDSVICSLPAANRDPALAPDVDRLDVT---------REPIPHVAFGHGVHHCLGAALARL 355
Query: 62 QMKTTLSTLLRRY 74
+++T + L RR+
Sbjct: 356 ELRTVFTELWRRF 368
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 46.1 bits (110), Expect = 2e-07
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + +RD P D R+ + + F G C+G++ L
Sbjct: 305 GEMVMLGLAAANRDADWMPEPDRLDIT---------RDASGGVFFGHGIHFCLGAQLARL 355
Query: 62 QMKTTLSTLLRRY 74
+ + + L
Sbjct: 356 EGRVAIGRLFADR 368
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 46.1 bits (110), Expect = 2e-07
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A +RD + + D D R PN +L F G +C+G+ +
Sbjct: 324 GEPVLASTGAANRDQAQFPDADRIDVD---------RTPNQHLGFGHGVHHCLGAPLARV 374
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ L LL+R LPG
Sbjct: 375 ELQVALEVLLQR---LPG 389
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 46.1 bits (110), Expect = 2e-07
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A + DP P FD R P +L F G C+G + +
Sbjct: 306 GEQVVAHVLAADFDPAFVEEPERFDIT---------RRPAPHLAFGFGAHQCIGQQLARI 356
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ TL RR LPG
Sbjct: 357 ELQIVFETLFRR---LPG 371
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 46.1 bits (110), Expect = 2e-07
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + + DP + +P D + R +L F GP C+G +
Sbjct: 314 GEGVIVSMLSANWDPAVFKDPAVLDVE---------RGARHHLAFGFGPHQCLGQNLARM 364
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ TL RR +P
Sbjct: 365 ELQIVFDTLFRR---IPS 379
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 45.8 bits (109), Expect = 2e-07
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V A++ +RDP + +P F P R PN ++ F G +C+GS +
Sbjct: 322 GTPVVAWLPAANRDPAEFDDPDTFLPGR---------KPNRHITFGHGMHHCLGSALARI 372
Query: 62 QMKTTLSTLLRRY 74
++ L L R
Sbjct: 373 ELSVVLRVLAERV 385
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 45.6 bits (109), Expect = 2e-07
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +I +RD + +P F PD R PN +L F SG C+G+ L
Sbjct: 275 GELVRVWIASANRDEEVFKDPDSFIPD---------RTPNPHLSFGSGIHLCLGAPLARL 325
Query: 62 QMKTTLSTLLRRYRVL 77
+ + L +++RV
Sbjct: 326 EARIALEEFAKKFRVK 341
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 45.7 bits (109), Expect = 2e-07
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + + RD R H DRF +++R + N ++ F GP C G+ +
Sbjct: 311 GDALIVSYGALGRDERA----HGPTADRF---DLTRTSGNRHISFGHGPHVCPGAALSRM 363
Query: 62 QMKTTLSTLLRRY 74
+ L L R+
Sbjct: 364 EAGVALPALYARF 376
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 45.7 bits (109), Expect = 2e-07
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +RDP + +P D D R+PN +L + +G C G+ +
Sbjct: 314 GEPVYVSYLAANRDPDVFPDPDRIDLD---------RDPNPHLAYGNGHHFCTGAVLARM 364
Query: 62 QMKTTLSTLLRRY 74
Q + + TLL R
Sbjct: 365 QTELLVDTLLERL 377
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 45.7 bits (109), Expect = 2e-07
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V + + D R ++ P FD R PN +L F G +C+G+ L
Sbjct: 311 GDLVLFDLGLPNFDERAFTGPEEFDAA---------RTPNPHLTFGHGIWHCIGAPLARL 361
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++T + L R LP
Sbjct: 362 ELRTMFTKLFTR---LPE 376
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 45.7 bits (109), Expect = 2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 14 RDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTLSTLLRR 73
RD P F I R P +L F G CVG++ +Q++ +L R
Sbjct: 345 RDDEVIDRPEEFI--------IDRPRPRQHLSFGFGIHRCVGNRLAEMQLRILWEEILTR 396
Query: 74 YR 75
+
Sbjct: 397 FS 398
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 45.3 bits (108), Expect = 3e-07
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V I +RD +P D + R + + F G CVG+
Sbjct: 314 GDYVLCSILMANRDEALTPDPDVLDAN---------RAAVSDVGFGHGIHYCVGAALARS 364
Query: 62 QMKTTLSTLLRRY 74
++ TL RR+
Sbjct: 365 MLRMAYQTLWRRF 377
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 45.3 bits (108), Expect = 3e-07
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V A + + DP + +P D R N ++ F G CVG L
Sbjct: 318 DDGVIALLAGANHDPEQFDDPERVDFH---------RTDNHHVAFGYGVHQCVGQHLARL 368
Query: 62 QMKTTLSTLLRRYRVLPG 79
+++ L TLLRR +P
Sbjct: 369 ELEVALETLLRR---VPT 383
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 45.3 bits (108), Expect = 3e-07
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G T + RD + +P + R PN +L G C+G+ +
Sbjct: 299 GQTAMLWFPIASRDRSAFDSPDNIVIE---------RTPNRHLSLGHGIHRCLGAHLIRV 349
Query: 62 QMKTTLSTLLRR---YRVLPGDKCR 83
+ + ++ L+R + + P +C
Sbjct: 350 EARVAITEFLKRIPEFSLDPNKECE 374
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 45.3 bits (108), Expect = 3e-07
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +RDP + +P D + R+PN ++ F GP C G L
Sbjct: 311 GDAVYVSYLAANRDPEVFPDPDRIDFE---------RSPNPHVSFGFGPHYCPGGMLARL 361
Query: 62 QMKTTLSTLLRRY 74
+ + + +L R
Sbjct: 362 ESELLVDAVLDRV 374
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 45.0 bits (107), Expect = 4e-07
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V ++ +RD +P FDP R + A L F G C+G+ L
Sbjct: 309 DVMVNTWVLSANRDSDAHDDPDRFDPSR-------KSGGAAQLSFGHGVHFCLGAPLARL 361
Query: 62 QMKTTLSTLLRRYRVL 77
+ + L ++ R+ L
Sbjct: 362 ENRVALEEIIARFGRL 377
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 45.0 bits (107), Expect = 4e-07
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 12/82 (14%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + D P D R ++ F GP C G +
Sbjct: 322 GDMILLPTALHGLDDAANPEPWKLDFS---------RRSISHSTFGGGPHRCAGMHLARM 372
Query: 62 QMKTTLSTLLRR---YRVLPGD 80
++ TL L+R + G+
Sbjct: 373 EVIVTLEEWLKRIPEFSFKEGE 394
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 44.9 bits (107), Expect = 4e-07
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V +RDPR + P FD + R+P + F +G R C+GS
Sbjct: 301 DDVVVVLAGAANRDPRRYDRPDDFDIE---------RDPVPSMSFGAGMRYCLGSYLART 351
Query: 62 QMKTTLSTLLRR 73
Q++ ++ L R
Sbjct: 352 QLRAAVAALARL 363
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 44.5 bits (106), Expect = 5e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + + D + P FD RNPN++L F G C+G++ L
Sbjct: 298 GEKMMLLFESANFDEAVFCEPEKFDVQ---------RNPNSHLAFGFGTHFCLGNQLARL 348
Query: 62 QMKTTLSTLLRRYRVL 77
++ +LRR L
Sbjct: 349 ELSLMTERVLRRLPDL 364
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 44.6 bits (106), Expect = 6e-07
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V +RD R + D R P L FS G +C+G+ +
Sbjct: 318 GRRVLLLYGSANRDERQYGP----DAAELDV----TRCPRNILTFSHGAHHCLGAAAARM 369
Query: 62 QMKTTLSTLLRR---YRVLPGD 80
Q + L+ LL R + V
Sbjct: 370 QCRVALTELLARCPDFEVAESR 391
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 43.7 bits (104), Expect = 9e-07
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V ++ +RD + P F R +L F G C+G+ L
Sbjct: 254 GDQVIVYLGSANRDETFFDEPDLFKIGR----------REMHLAFGIGIHMCLGAPLARL 303
Query: 62 QMKTTLSTLLRRYR 75
+ L+ +L ++
Sbjct: 304 EASIALNDILNHFK 317
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 43.1 bits (102), Expect = 2e-06
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + D RH +P D R + F+ GP C G L
Sbjct: 323 GDLILLPTALHGLDDRHHDDPMTVDLS---------RRDVTHSTFAQGPHRCAGMHLARL 373
Query: 62 QMKTTLSTLLRRYR 75
++ L L R
Sbjct: 374 EVTVMLQEWLARIP 387
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 42.7 bits (101), Expect = 3e-06
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + + DP + P FDP R N +L F +G C+G L
Sbjct: 357 GDWLMLNYVAANHDPAQFPEPRKFDPTR---------PANRHLAFGAGSHQCLGLHLARL 407
Query: 62 QMKTTLSTLLRRYR 75
+M+ L LL R
Sbjct: 408 EMRVLLDVLLDRVD 421
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 42.3 bits (100), Expect = 3e-06
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + +RD +SNP FD R PN +L F G C+G L
Sbjct: 335 GDRIMLSYPSANRDEEVFSNPDEFDITR---------FPNRHLGFGWGAHMCLGQHLAKL 385
Query: 62 QMKTTLSTLLRRYR 75
+MK LL + +
Sbjct: 386 EMKIFFEELLPKLK 399
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 41.2 bits (97), Expect = 9e-06
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFS-SGPRNCVGSKYGM 60
G V+ + +RD +++P FD RNPN +L F G C+G+
Sbjct: 343 GDKVSLWYCSANRDESKFADPWTFDLA---------RNPNPHLGFGGGGAHFCLGANLAR 393
Query: 61 LQMKTTLSTLLRRYR 75
+++ L R+
Sbjct: 394 REIRVAFDELRRQMP 408
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFS-SGPRNCVGSKYGM 60
G V F + D + +P F+ RNPN ++ F +G C+G+
Sbjct: 334 GQRVVMFYRSANFDEEVFQDPFTFNIL---------RNPNPHVGFGGTGAHYCIGANLAR 384
Query: 61 LQMKTTLSTLLRRYR 75
+ + + +
Sbjct: 385 MTINLIFNAVADHMP 399
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 37.6 bits (88), Expect = 2e-04
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G + + +R P FD R ++ F G +C+G+ L
Sbjct: 295 GDVLTCSMLATNRAP-----GDRFDITR---------EKATHMAFGHGIHHCIGAPLARL 340
Query: 62 QMKTTLSTLLRRY 74
Q++ L ++ R+
Sbjct: 341 QLRVALPAVVGRF 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.005
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 26/92 (28%)
Query: 9 IYQIHRDPRHWSNPHCFDPDRFLPSEISRRNP-----NAYLPFSSGPRNCVGSKYGMLQM 63
+Y RD + N D F +SR P A L + G+L
Sbjct: 111 MYIEQRDRLY--N----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGS 161
Query: 64 -KTTLSTLLRRYRVLPGDKCRSVE-DVRFEFG 93
KT + D C S + + +F
Sbjct: 162 GKT----------WVALDVCLSYKVQCKMDFK 183
Score = 26.7 bits (58), Expect = 1.4
Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 41/98 (41%)
Query: 10 YQIHR---DPRHWSNPHCFDPDRFLP--------------------SEISRRNPNAYLPF 46
Y +HR D H++ P FD D +P E +L F
Sbjct: 443 YALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 47 ---------SSGPRNCVGSKYGMLQMKTTLSTLLRRYR 75
S N GS LQ L+ Y+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQ-------LKFYK 531
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 26.5 bits (58), Expect = 1.3
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 38 RNPNAYLPFSSGPR-NCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
RN + + S N V S T LL R + EDV G
Sbjct: 234 RNSTHEMYWVSRASGNVVHSVN------MTSQVLLGRMEKRTWKGPQYEEDVNLGSG 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.4
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 9/35 (25%)
Query: 9 IYQIHRDPRHW------SNPHCFDPDRFLPSEISR 37
+ I R P W H D F P S
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILD---FGPGGASG 511
Score = 25.8 bits (56), Expect = 2.5
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 23 HCFDPDRFLPSEISRRNPNAYLPFSSGPRNC-VGSKYGMLQMKTTLSTLLRRYRVLPGDK 81
H D F +I NP G + + Y + +T + L+ ++ +
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-EI 1710
Query: 82 CRSVEDVRFE 91
F
Sbjct: 1711 NEHSTSYTFR 1720
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 26.0 bits (58), Expect = 1.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 20 SNPHCFDPDRFLPSEISRRNPNAYLPFSSG 49
+ P F F E+ R+ A + SSG
Sbjct: 173 NTPPGFQASSFKTVEVDRKEQVALIMNSSG 202
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 25.4 bits (56), Expect = 3.3
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 1 MGATVAAFIYQIHRDPRHWS-NP 22
+GA +A I+Q+ + + + NP
Sbjct: 251 LGAFLAYSIWQMWKWLNYQTTNP 273
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 25.4 bits (55), Expect = 3.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 19 WSNPHCFDPDRFLPSEISRR 38
+ P F DR PS+ + R
Sbjct: 3 LARPLSFHEDRLFPSDPATR 22
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 24.9 bits (55), Expect = 4.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 22 PHCFDPDRFLPSEISRRNPNAYLPFSSG 49
P F+ F+P R A + SSG
Sbjct: 173 PPGFNEYDFVPESFDRDKTIALIMNSSG 200
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 24.5 bits (53), Expect = 5.9
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 38 RNPNAYLPFSSGPR-NCVGSKYGMLQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
RN N + + SG N V + T L+ R + EDV G
Sbjct: 213 RNSNHEMYWVSGASGNIVHAVN------MTSQVLIGRMDKKIWKGPKYEEDVNLGSG 263
>1n5u_A Serum albumin; plasma protein; HET: MYR HEM; 1.90A {Homo sapiens}
SCOP: a.126.1.1 a.126.1.1 a.126.1.1 PDB: 1bj5_A* 1bm0_A
1e78_A 1ao6_A* 1e7b_A 1e7c_A* 1e7e_A* 1e7f_A* 1e7g_A*
1e7h_A* 1e7i_A* 1gni_A* 1gnj_A* 1h9z_A* 1ha2_A* 1hk1_A*
1hk4_A* 1e7a_A* 1o9x_A* 1uor_A ...
Length = 585
Score = 24.3 bits (52), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 26 DPDRFLPS---EISRRNPNAYLP 45
+ + FL EI+RR+P Y P
Sbjct: 130 NEETFLKKYLYEIARRHPYFYAP 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.458
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,527,601
Number of extensions: 74571
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 90
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)