RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5859
(93 letters)
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 91.3 bits (225), Expect = 7e-24
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
V + DPR++ P+ F+P FL + + + ++PFS G R C+G
Sbjct: 358 NTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIART 417
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
++ +T+L+ + + ++ E G
Sbjct: 418 ELFLFFTTILQNFSIASPVPPEDIDLTPRESG 449
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 90.2 bits (222), Expect = 2e-23
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G TV +Y +H D ++W +P F P+RFL S A +PFS G R+C+G +
Sbjct: 358 GTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARM 417
Query: 62 QMKTTLSTLLRRYRV-LPGDKCRSVEDVRFEFG 93
+M + LL+R+ + P + V D++ G
Sbjct: 418 EMFLFFTALLQRFHLHFPHEL---VPDLKPRLG 447
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 89.4 bits (220), Expect = 3e-23
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 2 GATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGML 61
G V Y +HRDP++W+ P F P+RF +P Y PF SGPRNC+G ++ ++
Sbjct: 364 GVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALM 423
Query: 62 QMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
MK L +L+ + P + + ++ G
Sbjct: 424 NMKLALIRVLQNFSFKPCKE--TQIPLKLSLG 453
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 87.1 bits (214), Expect = 2e-22
Identities = 21/93 (22%), Positives = 44/93 (47%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G T+ + + D + + NP FDP FL + + ++PFS+G R CVG
Sbjct: 358 KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAG 417
Query: 61 LQMKTTLSTLLRRYRVLPGDKCRSVEDVRFEFG 93
+++ L+++L+ + + ++++ G
Sbjct: 418 MELFLFLTSILQNFNLKSLVDPKNLDTTPVVNG 450
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 76.0 bits (185), Expect = 2e-18
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G + +RD +SNP FD RF PN +L F G C+G
Sbjct: 334 RGDRIMLSYPSANRDEEVFSNPDEFDITRF---------PNRHLGFGWGAHMCLGQHLAK 384
Query: 61 LQMKTTLSTLLRRYRVL 77
L+MK LL + + +
Sbjct: 385 LEMKIFFEELLPKLKSV 401
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 74.4 bits (181), Expect = 7e-18
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 9 IYQIHRDPRHWS-NPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
I Q+HRD W + F P+RF S +A+ PF +G R C+G ++ + + L
Sbjct: 355 IPQLHRDKTIWGDDVEEFRPERFENP--SAIPQHAFKPFGNGQRACIGQQFALHEATLVL 412
Query: 68 STLLRRYRVLPGDK 81
+L+ +
Sbjct: 413 GMMLKHFDFEDHTN 426
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 73.8 bits (179), Expect = 1e-17
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFL-PSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTT 66
+R P + +PH F P R+ P + N ++PF +G CVG+ + ++Q+K
Sbjct: 344 SPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAI 403
Query: 67 LSTLLRRYRVLPGDKCRSVEDVRFEF 92
S LLR Y S + +
Sbjct: 404 FSVLLREYEFEMAQPPESYRNDHSKM 429
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 71.3 bits (173), Expect = 8e-17
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
+ H+ + F P+RFL Y PF G R C+G + +L+ L
Sbjct: 293 VLSPYVTQRLHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGRDFALLEGPIVL 350
Query: 68 STLLRRYRVLPGDKCRSVEDV 88
RR+R+ P R + V
Sbjct: 351 RAFFRRFRLDPLPFPRVLAQV 371
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 70.1 bits (170), Expect = 2e-16
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSG----PRNCVGSKYGMLQM 63
+Y + DPR W +P F P+RF N +P G C G + M
Sbjct: 312 DLYGTNHDPRLWDHPDEFRPERFAER---EENLFDMIPQGGGHAEKGHRCPGEGITIEVM 368
Query: 64 KTTLSTLLRRYRVLPGDK 81
K +L L+ + ++
Sbjct: 369 KASLDFLVHQIEYDVPEQ 386
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 68.7 bits (166), Expect = 7e-16
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
+RD + NP F+ +R P P L F G C+ ++ T
Sbjct: 310 SNQSANRDEEVFENPDEFNMNRKWP-------PQDPLGFGFGDHRCIAEHLAKAELTTVF 362
Query: 68 STLLRRY 74
STL +++
Sbjct: 363 STLYQKF 369
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 67.5 bits (163), Expect = 2e-15
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G + A +R P + FD R +L F G C+G+
Sbjct: 305 RGEPILASYAAANRHPDWHEDADTFDATRT---------VKEHLAFGHGVHFCLGAPLAR 355
Query: 61 LQMKTTLSTLLRRYRVL 77
+++ L +L R+ L
Sbjct: 356 MEVTLALESLFGRFPDL 372
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 66.0 bits (159), Expect = 6e-15
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
+RDP+ + +PH FD R +L F G C+G L+ + L
Sbjct: 313 ANGAANRDPKQFPDPHRFDVTRD---------TRGHLSFGQGIHFCMGRPLAKLEGEVAL 363
Query: 68 STLLRRYRVL 77
L R+ L
Sbjct: 364 RALFGRFPAL 373
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 65.6 bits (158), Expect = 8e-15
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G +V + +RDP + D R P ++ F G +C+G+
Sbjct: 300 KGDSVICSLPAANRDPALAPDVDRLDVTR---------EPIPHVAFGHGVHHCLGAALAR 350
Query: 61 LQMKTTLSTLLRRYRVL 77
L+++T + L RR+ L
Sbjct: 351 LELRTVFTELWRRFPAL 367
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 65.2 bits (157), Expect = 1e-14
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
I +RD +P D +R + + F G CVG+ ++
Sbjct: 317 SILMANRDEALTPDPDVLDANRA---------AVSDVGFGHGIHYCVGAALARSMLRMAY 367
Query: 68 STLLRRY 74
TL RR+
Sbjct: 368 QTLWRRF 374
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 63.3 bits (152), Expect = 5e-14
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G V +RDP + +P D +R +PN ++ F GP C G
Sbjct: 303 AGDAVYVSYLAANRDPEVFPDPDRIDFER---------SPNPHVSFGFGPHYCPGGMLAR 353
Query: 61 LQMKTTLSTLLRRYRVL 77
L+ + + +L R L
Sbjct: 354 LESELLVDAVLDRVPGL 370
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 62.9 bits (151), Expect = 8e-14
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 4 TVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQM 63
V I RD +S P FD R +A L + GP C G L+
Sbjct: 310 MVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYGRGPHVCPGVSLARLEA 360
Query: 64 KTTLSTLLRRY 74
+ + T+ RR+
Sbjct: 361 EIAVGTIFRRF 371
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 62.2 bits (149), Expect = 1e-13
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G V +I +RD + +P F PDR PN +L F SG C+G+
Sbjct: 274 EGELVRVWIASANRDEEVFKDPDSFIPDR---------TPNPHLSFGSGIHLCLGAPLAR 324
Query: 61 LQMKTTLSTLLRRYRVLPGDKCRSVE 86
L+ + L +++RV K ++
Sbjct: 325 LEARIALEEFAKKFRVKEIVKKEKID 350
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 62.1 bits (149), Expect = 1e-13
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
+ + DP H+ NP + DR NP ++L F G C GS G + +
Sbjct: 307 LLEGANFDPEHFPNPGSIELDRP--------NPTSHLAFGRGQHFCPGSALGRRHAQIGI 358
Query: 68 STLLRRYRVL 77
LL++ +
Sbjct: 359 EALLKKMPGV 368
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 61.3 bits (147), Expect = 3e-13
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 8 FIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQMKTTL 67
D R + P D R ++ F G C+G ++ TL
Sbjct: 311 PQMLSGLDERENACPMHVDFSR---------QKVSHTTFGHGSHLCLGQHLARREIIVTL 361
Query: 68 STLLRRY---RVLPGDKCR 83
L R + PG + +
Sbjct: 362 KEWLTRIPDFSIAPGAQIQ 380
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 59.9 bits (143), Expect = 9e-13
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 1 MGATVAAFIYQIHRDPRHWSNPHCFDPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGM 60
G V +I +RD + + F PDR NPN +L F SG C+G+
Sbjct: 274 EGEYVRVWIASANRDEEVFHDGEKFIPDR---------NPNPHLSFGSGIHLCLGAPLAR 324
Query: 61 LQMKTTLSTLLRRYRVLP 78
L+ + + +R+R +
Sbjct: 325 LEARIAIEEFSKRFRHIE 342
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 59.0 bits (141), Expect = 2e-12
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 5 VAAFIYQIHRDPRHWSNPHCF--DPDRFLPSEISRRNPNAYLPFSSGPRNCVGSKYGMLQ 62
+ A I + DRF + R + N ++ F GP C G+ ++
Sbjct: 301 IPAGDALIVSYGALGRDERAHGPTADRFDLT---RTSGNRHISFGHGPHVCPGAALSRME 357
Query: 63 MKTTLSTLLRRYRVL 77
L L R+ L
Sbjct: 358 AGVALPALYARFPHL 372
>d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Phanerochaete chrysosporium,
Cel7d [TaxId: 5306]}
Length = 431
Score = 23.6 bits (51), Expect = 4.7
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 32 PSEISRRNPNAYLPFSS---GPRNCVGSKYG 59
PS++ + PN+ + FS+ G +GS +
Sbjct: 401 PSDVESQVPNSQVVFSNIKFGD---IGSTFS 428
>d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 198
Score = 23.3 bits (50), Expect = 5.2
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 28 DRFLPSEISRRNPNAYLPF 46
++F+ E S A L
Sbjct: 141 NQFM-WEYSTNYGQAPLSL 158
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
[TaxId: 51453]}
Length = 434
Score = 23.3 bits (50), Expect = 5.8
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 32 PSEISRRNPNAYLPFSS---GPRNCVGSKYGM 60
P+++ ++PNA + FS+ GP +GS
Sbjct: 404 PAQVESQSPNAKVTFSNIKFGP---IGSTGNP 432
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 23.3 bits (50), Expect = 6.2
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 62 QMKTTLSTLLRRYR 75
++ + TL+ +Y
Sbjct: 233 NIQNDVQTLVEKYS 246
>d1n5ua1 a.126.1.1 (A:2-196) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 22.9 bits (49), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 26 DPDRFLPS---EISRRNPNAYLPF 46
+ + FL EI+RR+P Y P
Sbjct: 129 NEETFLKKYLYEIARRHPYFYAPE 152
>d2i1sa1 d.343.1.1 (A:4-188) Hypothetical protein MM3350
{Methanosarcina mazei [TaxId: 2209]}
Length = 185
Score = 22.7 bits (48), Expect = 8.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 13 HRDPRHWSNPHCFDPDRFLPSEI 35
+ D W FDP+ F P ++
Sbjct: 162 YEDTVLWLGDD-FDPEYFDPKDV 183
>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
68825]}
Length = 435
Score = 22.9 bits (49), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 32 PSEISRRNPNAYLPFSS---GPRNCVGSKY 58
PS++ ++PN+Y+ +S+ GP + S +
Sbjct: 408 PSDVESQSPNSYVTYSNIKFGP---INSTF 434
>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 22.5 bits (48), Expect = 10.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 26 DPDRFLPS---EISRRNPNAYLPF 46
D FL E +RR+P+ +
Sbjct: 126 AKDVFLGMFLYEYARRHPDYSVVL 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.458
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 389,915
Number of extensions: 15773
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 34
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.8 bits)