BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy586
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/254 (69%), Positives = 208/254 (81%), Gaps = 1/254 (0%)
Query: 5 GRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFY 64
G+DLFDLVCRT+GLRETW+FGLQY K +AWLK+DKKV D +S + F FLAKFY
Sbjct: 26 GKDLFDLVCRTLGLRETWFFGLQY-TIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFY 84
Query: 65 AEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPG 124
E+ EELVQE+TQHLFFLQVK+ IL +YCPPEASVLLASYAVQAKYGDYD S +K G
Sbjct: 85 PENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRG 144
Query: 125 MLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNY 184
LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNY
Sbjct: 145 FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNY 204
Query: 185 FPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244
F I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK
Sbjct: 205 FTIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKID 264
Query: 245 NFIFFSLKVRMNKL 258
F F S K+R+NKL
Sbjct: 265 VFKFNSSKLRVNKL 278
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 80/112 (71%), Gaps = 7/112 (6%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQR 304
F L+V+ L D+ Y P +L + + +YGDYD S +K G LA E+LLP+R
Sbjct: 100 LFFLQVKKQIL----DEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKR 155
Query: 305 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
VI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNYF I
Sbjct: 156 VINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTI 207
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 57/196 (29%)
Query: 259 YGDYDDSTYKPGMLASEDLLPQR------------------------------------- 281
YGDYD S +K G LA E+LLP+R
Sbjct: 133 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 192
Query: 282 -------YG-DYDDSTYKPG--MLASEDLLPQRVID-QYQMTPEMWEDRIKIWYADHRGM 330
YG +Y K G +L D L + D + ++TP +I + + R +
Sbjct: 193 IAQDLEMYGVNYFTIRNKKGTELLLGVDALGLHIYDPENRLTP-----KISFPWNEIRNI 247
Query: 331 SRDEAEMEYLKIAQDLDMYGVNYFPIS----ILDLCIGNHDLFMRRRKPDTMEIQQMKSQ 386
S + E + + +D++ N + IL LCIGNHDLFMRRRK D++E+QQMK+Q
Sbjct: 248 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKADSLEVQQMKAQ 307
Query: 387 AKEEKSRRQIERNKLA 402
A+EEK+R+Q+ER +LA
Sbjct: 308 AREEKARKQMERQRLA 323
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/255 (65%), Positives = 210/255 (82%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +T+GLRE WYFGL Y DNKGF WLKLDKKV Q + + F F AK
Sbjct: 23 TTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRAK 82
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
FY EDVAEEL+Q++TQ LFFLQVK+ ILS +IYCPPE +VLL SYAVQAK+GDY+ +K
Sbjct: 83 FYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHK 142
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
G L+SE L+PQRV+DQ+++T + WEDRI++W+A+HRGM +D A +EYLKIAQDL+MYG+
Sbjct: 143 SGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGI 202
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK TDLWLGV ALGLNIYEK++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 203 NYFEIKNKKGTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 262
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 263 APDFVFYAPRLRINK 277
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 260 GDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW 316
G D Y P +L + ++GDY+ +K G L+SE L+PQRV+DQ+++T + W
Sbjct: 108 GILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQW 167
Query: 317 EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
EDRI++W+A+HRGM +D A +EYLKIAQDL+MYG+NYF I
Sbjct: 168 EDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGINYFEI 207
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 358 ILDLCIGNHDLFMRRRKP 375
IL LC+GNH+L+MRRRKP
Sbjct: 279 ILQLCMGNHELYMRRRKP 296
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 208/254 (81%), Gaps = 1/254 (0%)
Query: 5 GRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFY 64
G+DLFDLVCRT+GLRETW+FGLQY K +AWLK+DKKV D +S + F FLAKFY
Sbjct: 44 GKDLFDLVCRTLGLRETWFFGLQY-TIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFY 102
Query: 65 AEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPG 124
E+ EELVQE+TQHLFFLQVK+ IL IYCPPEASVLLASYAVQAKYGDYD S +K G
Sbjct: 103 PENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRG 162
Query: 125 MLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNY 184
LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNY
Sbjct: 163 FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNY 222
Query: 185 FPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244
F I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK
Sbjct: 223 FAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKID 282
Query: 245 NFIFFSLKVRMNKL 258
F F S K+R+NKL
Sbjct: 283 VFKFNSSKLRVNKL 296
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
D+ Y P +L + + +YGDYD S +K G LA E+LLP+RVI+ YQMTPEMWE+R
Sbjct: 129 DEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEER 188
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I WYA+HRG +RDEAEMEYLKIAQDL+MYGVNYF I
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAI 225
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 68/168 (40%), Gaps = 57/168 (33%)
Query: 259 YGDYDDSTYKPGMLASEDLLPQR------------------------------------- 281
YGDYD S +K G LA E+LLP+R
Sbjct: 151 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 210
Query: 282 -------YG-DYDDSTYKPG--MLASEDLLPQRVID-QYQMTPEMWEDRIKIWYADHRGM 330
YG +Y K G +L D L + D + ++TP +I + + R +
Sbjct: 211 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTP-----KISFPWNEIRNI 265
Query: 331 SRDEAEMEYLKIAQDLDMYGVNYFPIS----ILDLCIGNHDLFMRRRK 374
S + E + + +D++ N + IL LCIGNHDLFMRRRK
Sbjct: 266 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRK 313
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 208/254 (81%), Gaps = 1/254 (0%)
Query: 5 GRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFY 64
G+DLFDLVCRT+GLRETW+FGLQY K +AWLK+DKKV D +S + F FLAKFY
Sbjct: 44 GKDLFDLVCRTLGLRETWFFGLQY-TIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFY 102
Query: 65 AEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPG 124
E+ EELVQE+TQHLFFLQVK+ IL IYCPPEASVLLASYAVQAKYGDYD S +K G
Sbjct: 103 PENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRG 162
Query: 125 MLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNY 184
LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNY
Sbjct: 163 FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNY 222
Query: 185 FPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244
F I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK
Sbjct: 223 FAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKID 282
Query: 245 NFIFFSLKVRMNKL 258
F F S K+R+NKL
Sbjct: 283 VFKFNSSKLRVNKL 296
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
D+ Y P +L + + +YGDYD S +K G LA E+LLP+RVI+ YQMTPEMWE+R
Sbjct: 129 DEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEER 188
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I WYA+HRG +RDEAEMEYLKIAQDL+MYGVNYF I
Sbjct: 189 ITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAI 225
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 68/168 (40%), Gaps = 57/168 (33%)
Query: 259 YGDYDDSTYKPGMLASEDLLPQR------------------------------------- 281
YGDYD S +K G LA E+LLP+R
Sbjct: 151 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 210
Query: 282 -------YG-DYDDSTYKPG--MLASEDLLPQRVID-QYQMTPEMWEDRIKIWYADHRGM 330
YG +Y K G +L D L + D + ++TP +I + + R +
Sbjct: 211 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTP-----KISFPWNEIRNI 265
Query: 331 SRDEAEMEYLKIAQDLDMYGVNYFPIS----ILDLCIGNHDLFMRRRK 374
S + E + + +D++ N + IL LCIGNHDLFMRRRK
Sbjct: 266 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRK 313
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 208/254 (81%), Gaps = 1/254 (0%)
Query: 5 GRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFY 64
G+DLFDLVCRT+GLRETW+FGLQY K +AWLK+DKKV D +S + F FLAKFY
Sbjct: 31 GKDLFDLVCRTLGLRETWFFGLQY-TIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFY 89
Query: 65 AEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPG 124
E+ EELVQE+TQHLFFLQVK+ IL IYCPPEASVLLASYAVQAKYGDYD S +K G
Sbjct: 90 PENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRG 149
Query: 125 MLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNY 184
LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNY
Sbjct: 150 FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNY 209
Query: 185 FPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244
F I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK
Sbjct: 210 FAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKID 269
Query: 245 NFIFFSLKVRMNKL 258
F F S K+R+NKL
Sbjct: 270 VFKFNSSKLRVNKL 283
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 80/112 (71%), Gaps = 7/112 (6%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQR 304
F L+V+ L D+ Y P +L + + +YGDYD S +K G LA E+LLP+R
Sbjct: 105 LFFLQVKKQIL----DEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKR 160
Query: 305 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
VI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYGVNYF I
Sbjct: 161 VINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAI 212
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 68/168 (40%), Gaps = 57/168 (33%)
Query: 259 YGDYDDSTYKPGMLASEDLLPQR------------------------------------- 281
YGDYD S +K G LA E+LLP+R
Sbjct: 138 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 197
Query: 282 -------YG-DYDDSTYKPG--MLASEDLLPQRVID-QYQMTPEMWEDRIKIWYADHRGM 330
YG +Y K G +L D L + D + ++TP +I + + R +
Sbjct: 198 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTP-----KISFPWNEIRNI 252
Query: 331 SRDEAEMEYLKIAQDLDMYGVNYFPIS----ILDLCIGNHDLFMRRRK 374
S + E + + +D++ N + IL LCIGNHDLFMRRRK
Sbjct: 253 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRK 300
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 84 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 144 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 204 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 264 APDFVFYAPRLRINK 278
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 112 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 171
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 172 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 208
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKS 392
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+ + S
Sbjct: 280 ILALCMGNHELYMRRRKPDTIEVQQMKAQARVDSS 314
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 163/255 (63%), Positives = 207/255 (81%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +T+GLRE W+FGLQY D+KG + W+KL KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
FY EDVA+EL+QE+T LF+LQVK AILS +IYCPPE SVLLASYAVQA++GD++ + +
Sbjct: 84 FYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHG 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV DQ++M+ E WE I W+ +HRGM R++A MEYLKIAQDL+MYGV
Sbjct: 144 PGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK+T+LWLGV ALGLNIYEK++KLTPK FPWSEIR+ISF+D+KFIIKP+DK
Sbjct: 204 NYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+FF+ +VR+NK
Sbjct: 264 APDFVFFAPRVRVNK 278
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 41/153 (26%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCA 417
IL LC+GNH+L+MRRRKPDT+++QQMK+QA+EEK +Q +R KL E RE AE+++
Sbjct: 280 ILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQE 339
Query: 418 MEQRLVQYQEEIRLAN-----------------------------------------EAL 436
+ RL Q QEE+ + E
Sbjct: 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399
Query: 437 KCVKVSEREAAEREKCAMEQRLVQYQEEIRLAN 469
K ++ +ER+ E E A ++ + + Q+E+ L +
Sbjct: 400 KNMEAAERQKLEDEIRAKQEEVSRIQQEVELKD 432
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 84 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 144 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 204 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 264 APDFVFYAPRLRINK 278
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 112 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 171
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 172 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 208
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 30/31 (96%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAK 388
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+
Sbjct: 280 ILALCMGNHELYMRRRKPDTIEVQQMKAQAR 310
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 26 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 85
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 86 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 145
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 146 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 205
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 206 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 265
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 266 APDFVFYAPRLRINK 280
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 114 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 173
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 174 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 210
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQI 396
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+ + S R +
Sbjct: 282 ILALCMGNHELYMRRRKPDTIEVQQMKAQARVDSSGRIV 320
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 26 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 85
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 86 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 145
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 146 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 205
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 206 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 265
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 266 APDFVFYAPRLRINK 280
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 114 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 173
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 174 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 210
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 30/31 (96%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAK 388
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+
Sbjct: 282 ILALCMGNHELYMRRRKPDTIEVQQMKAQAR 312
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 26 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 85
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 86 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 145
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 146 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 205
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 206 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 265
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 266 APDFVFYAPRLRINK 280
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 114 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 173
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 174 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 210
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 30/31 (96%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAK 388
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+
Sbjct: 282 ILALCMGNHELYMRRRKPDTIEVQQMKAQAR 312
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/255 (64%), Positives = 212/255 (83%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +TVGLRE W+FGLQY D+KG+ WLKL+KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
F+ EDV+EEL+QE+TQ LFFLQVK+AIL+ +IYCPPE +VLLASYAVQAKYGDY+ +K
Sbjct: 84 FFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHK 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
PG LA++ LLPQRV++Q+++T E WE+RI+ W+ +HRGM R+++ MEYLKIAQDL+MYGV
Sbjct: 144 PGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK T+LWLGV ALGLNIYE ++KLTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 204 NYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 264 APDFVFYAPRLRINK 278
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 263 DDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDR 319
+D Y P +L + + +YGDY+ +KPG LA++ LLPQRV++Q+++T E WE+R
Sbjct: 112 NDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEER 171
Query: 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
I+ W+ +HRGM R+++ MEYLKIAQDL+MYGVNYF I
Sbjct: 172 IQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEI 208
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 358 ILDLCIGNHDLFMRRRKP 375
IL LC+GNH+L+MRRRKP
Sbjct: 280 ILALCMGNHELYMRRRKP 297
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 157/255 (61%), Positives = 209/255 (81%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +T+GLRE W+FGLQY+D KGF WLKL+KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
FY EDV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++ +K
Sbjct: 84 FYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHK 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
G LA + LLPQRV++Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL+MYGV
Sbjct: 144 SGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK ++LWLGV ALGLNIYE+ ++LTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 204 NYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 264 APDFVFYAPRLRINK 278
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 260 GDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW 316
G +D Y P +L + + +YGD++ +K G LA + LLPQRV++Q+++ + W
Sbjct: 109 GILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQW 168
Query: 317 EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
E+RI++W+ +HRGM R++A +EYLKIAQDL+MYGVNYF I
Sbjct: 169 EERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSI 208
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 358 ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKL 401
IL LC+GNH+L+MRRRKPDT+E+QQMK+QA+EEK ++Q+ER L
Sbjct: 280 ILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERAML 323
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 157/255 (61%), Positives = 209/255 (81%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +T+GLRE W+FGLQY+D KGF WLKL+KKV Q + + F F AK
Sbjct: 24 TTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRAK 83
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
FY EDV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++ +K
Sbjct: 84 FYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHK 143
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
G LA + LLPQRV++Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL+MYGV
Sbjct: 144 SGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGV 203
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK ++LWLGV ALGLNIYE+ ++LTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 204 NYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 263
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 264 APDFVFYAPRLRINK 278
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 260 GDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW 316
G +D Y P +L + + +YGD++ +K G LA + LLPQRV++Q+++ + W
Sbjct: 109 GILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQW 168
Query: 317 EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
E+RI++W+ +HRGM R++A +EYLKIAQDL+MYGVNYF I
Sbjct: 169 EERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSI 208
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 358 ILDLCIGNHDLFMRRRKP 375
IL LC+GNH+L+MRRRKP
Sbjct: 280 ILALCMGNHELYMRRRKP 297
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 155/255 (60%), Positives = 207/255 (81%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62
TG+ LFD V +T+GLRE W+FGLQY+D KGF WLKL+KKV Q + + F F AK
Sbjct: 21 TTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRAK 80
Query: 63 FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
FY EDV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++ +K
Sbjct: 81 FYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHK 140
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGV 182
G LA + LLPQRV++Q+++ + WE+RI++W+ +HRG R++A +EYLKIAQDL+ YGV
Sbjct: 141 SGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQDLEXYGV 200
Query: 183 NYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
NYF I NKK ++LWLGV ALGLNIYE+ ++LTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 201 NYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKK 260
Query: 243 SPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 261 APDFVFYAPRLRINK 275
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Query: 260 GDYDDSTYKP---GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW 316
G +D Y P +L + + +YGD++ +K G LA + LLPQRV++Q+++ + W
Sbjct: 106 GILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQW 165
Query: 317 EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
E+RI++W+ +HRG R++A +EYLKIAQDL+ YGVNYF I
Sbjct: 166 EERIQVWHEEHRGXLREDAVLEYLKIAQDLEXYGVNYFSI 205
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 358 ILDLCIGNHDLFMRRRKP 375
IL LC GNH+L+ RRRKP
Sbjct: 277 ILALCXGNHELYXRRRKP 294
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
R+ G+ LFD VC + L E YFGL Y D + WL K+++ Q S F F
Sbjct: 22 RSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAKEIKKQVRSG--AWHFSFNV 79
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY D A+ L +++T++ LQ++ I+S + C LL SY VQ++ GDYD
Sbjct: 80 KFYPPDPAQ-LSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYD---- 134
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEM---WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 178
P S+ I +++ P ED++ + HRGM+ EAEM +L+ A+ L
Sbjct: 135 -PDECGSD------YISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLS 187
Query: 179 MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
MYGV+ + + ++ LGV A GL IY ++ F W ++ IS+ F IK
Sbjct: 188 MYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRI---NRFAWPKVLKISYKRNNFYIK 243
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 226 HISFDDKKFIIKPVDKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGD 284
H SF+ K + P S + L++R + + G S +L S + + GD
Sbjct: 74 HFSFNVKFYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSE-LGD 132
Query: 285 YDDSTYKPGMLASEDLLPQRVIDQYQMTPEM---WEDRIKIWYADHRGMSRDEAEMEYLK 341
YD P S+ I +++ P ED++ + HRGM+ EAEM +L+
Sbjct: 133 YD-----PDECGSD------YISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLE 181
Query: 342 IAQDLDMYGVN 352
A+ L MYGV+
Sbjct: 182 NAKKLSMYGVD 192
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 20/239 (8%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
R+ G+ LFD VC + L E YFGL Y D + WL K+++ Q S F F
Sbjct: 22 RSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLDPAKEIKKQVRSG--AWHFSFNV 79
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY D A+ L +++T++ LQ++ I+S + C LL SY VQ++ GDYD
Sbjct: 80 KFYPPDPAQ-LSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSELGDYD---- 134
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEM---WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 178
P S+ I +++ P ED++ + HRGM+ EAEM +L+ A+ L
Sbjct: 135 -PDECGSD------YISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLS 187
Query: 179 MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
MYGV+ + + ++ LGV A GL IY ++ F W ++ IS+ F IK
Sbjct: 188 MYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRI---NRFAWPKVLKISYKRNNFYIK 243
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 226 HISFDDKKFIIKPVDKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGD 284
H SF+ K + P S + L++R + + G S +L S + + GD
Sbjct: 74 HFSFNVKFYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYTVQSE-LGD 132
Query: 285 YDDSTYKPGMLASEDLLPQRVIDQYQMTPEM---WEDRIKIWYADHRGMSRDEAEMEYLK 341
YD P S+ I +++ P ED++ + HRGM+ EAEM +L+
Sbjct: 133 YD-----PDECGSD------YISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLE 181
Query: 342 IAQDLDMYGVN 352
A+ L MYGV+
Sbjct: 182 NAKKLSMYGVD 192
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQ--GISNQCTTPFMF 59
A G+DL VC + L E YFGL DN WL K+++ Q G+ F F
Sbjct: 20 HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWN----FTF 75
Query: 60 LAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDS 119
KFY D A+ L +++T++ LQ++Q I++ + C LL SY +Q++ GDYD
Sbjct: 76 NVKFYPPDPAQ-LTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPE 134
Query: 120 TYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 179
+ ++ L P + T E+ E+++ + +R M+ +A++E+L+ A+ L M
Sbjct: 135 LHGVDYVSDFKLAPNQ-------TKEL-EEKVMELHKSYRSMTPAQADLEFLENAKKLSM 186
Query: 180 YGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
YGV+ + + D+ LGV + GL +Y+ + ++ FPW ++ IS+ F IK
Sbjct: 187 YGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRI---NRFPWPKVLKISYKRSSFFIK 241
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVID 307
+ L++R + + G S +L S + + GDYD + ++ L P +
Sbjct: 95 YLCLQLRQDIVAGRLPCSFATLALLGSYTIQSE-LGDYDPELHGVDYVSDFKLAPNQ--- 150
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVN 352
T E+ E+++ + +R M+ +A++E+L+ A+ L MYGV+
Sbjct: 151 ----TKEL-EEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVD 190
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 18/238 (7%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQ--GISNQCTTPFMF 59
A G+DL VC + L E YFGL DN WL K+++ Q G+ F F
Sbjct: 37 HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWN----FTF 92
Query: 60 LAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDS 119
KFY D A+ L +++T++ LQ++Q I++ + C LL SY +Q++ GDYD
Sbjct: 93 NVKFYPPDPAQ-LTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPE 151
Query: 120 TYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 179
+ ++ L P + T E+ E+++ + +R M+ +A++E+L+ A+ L M
Sbjct: 152 LHGVDYVSDFKLAPNQ-------TKEL-EEKVMELHKSYRSMTPAQADLEFLENAKKLSM 203
Query: 180 YGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
YGV+ + + D+ LGV + GL +Y+ + ++ FPW ++ IS+ F IK
Sbjct: 204 YGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRI---NRFPWPKVLKISYKRSSFFIK 258
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVID 307
+ L++R + + G S +L S + + GDYD + ++ L P +
Sbjct: 112 YLCLQLRQDIVAGRLPCSFATLALLGSYTIQSE-LGDYDPELHGVDYVSDFKLAPNQ--- 167
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVN 352
T E+ E+++ + +R M+ +A++E+L+ A+ L MYGV+
Sbjct: 168 ----TKEL-EEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVD 207
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KF+ D + V +L ++Q + IL+ + + A Y Q ++G +++ +
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 61
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
KPG L +D LP+ I Q E +I + + + MS EA++ Y+K+A+ L YG
Sbjct: 62 KPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 115
Query: 182 VNYFPISNK 190
V++F + K
Sbjct: 116 VSFFLVKEK 124
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +KPG L +D LP+ I Q E +I + + + MS EA++ Y+
Sbjct: 52 QFGPHNEQKHKPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYV 105
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 106 KLARSLKTYGVSFFLV 121
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 76 VTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQR 135
V +L ++Q + IL+ + + A Y Q ++G +++ +KPG L +D LP+
Sbjct: 11 VQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKE 70
Query: 136 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNK 190
I Q E +I + + + MS EA++ Y+K+A+ L YGV++F + K
Sbjct: 71 YIKQ------KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 119
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +KPG L +D LP+ I Q E +I + + + MS EA++ Y+
Sbjct: 47 QFGPHNEQKHKPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYV 100
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 101 KLARSLKTYGVSFFLV 116
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 4 TGRDLFDLVCRTVGLRETWYFGL----QYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59
T D+ +C +G+ + L E + WL + +++QG+ T +
Sbjct: 107 TVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHET--LLL 164
Query: 60 LAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDS 119
KF+ D + V +L ++Q + IL+ + + A + Q ++G +++
Sbjct: 165 RRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQ 224
Query: 120 TYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 179
+K G L +D LP+ + Q E +I + + MS EA++ Y+K+A+ L
Sbjct: 225 KHKAGFLDLKDFLPKEYVKQ------KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKT 278
Query: 180 YGVNYFPISNK 190
YGV++F + K
Sbjct: 279 YGVSFFLVKEK 289
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +K G L +D LP+ + Q E +I + + MS EA++ Y+
Sbjct: 217 QFGPHNEQKHKAGFLDLKDFLPKEYVKQ------KGERKIFQAHKNCGQMSEIEAKVRYV 270
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 271 KLARSLKTYGVSFFLV 286
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 76 VTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQR 135
V +L ++Q + IL+ + + A Y Q ++G +++ +KPG L +D LP+
Sbjct: 2 VQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKE 61
Query: 136 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNK 190
I Q E +I + + + MS EA++ Y+K+A+ L YGV++F + K
Sbjct: 62 YIKQ------KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 110
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +KPG L +D LP+ I Q E +I + + + MS EA++ Y+
Sbjct: 38 QFGPHNEQKHKPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYV 91
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 92 KLARSLKTYGVSFFLV 107
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KF+ D + V +L ++Q + IL+ + + A Y Q ++G +++ +
Sbjct: 8 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 67
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
KPG L +D LP+ I Q E +I + + + MS EA++ Y+K+A+ L YG
Sbjct: 68 KPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 121
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +KPG L +D LP+ I Q E +I + + + MS EA++ Y+
Sbjct: 58 QFGPHNEQKHKPGFLELKDFLPKEYIKQ------KGERKIFMAHKNCGNMSEIEAKVRYV 111
Query: 341 KIAQDLDMYG 350
K+A+ L YG
Sbjct: 112 KLARSLKTYG 121
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 60 LAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDS 119
KF+ D + V +L ++Q + IL+ E + + Q ++G + +
Sbjct: 11 FTKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEH 70
Query: 120 TYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 179
+KPG L ++ LP+ I Q E RI + + MS EA+++Y+K+A+ L
Sbjct: 71 KHKPGFLDLKEFLPKEYIKQ-----RGAEKRIFQEHKNCGEMSEIEAKVKYVKLARSLRT 125
Query: 180 YGVNYFPISNK 190
YGV++F + K
Sbjct: 126 YGVSFFLVKEK 136
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G + + +KPG L ++ LP+ I Q E RI + + MS EA+++Y+
Sbjct: 63 QFGPHVEHKHKPGFLDLKEFLPKEYIKQ-----RGAEKRIFQEHKNCGEMSEIEAKVKYV 117
Query: 341 KIAQDLDMYGVNYF 354
K+A+ L YGV++F
Sbjct: 118 KLARSLRTYGVSFF 131
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 76 VTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQR 135
V +L ++Q + IL+ + + A + Q ++G +++ +K G L +D LP+
Sbjct: 2 VQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKE 61
Query: 136 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNK 190
+ Q E +I + + MS EA++ Y+K+A+ L YGV++F + K
Sbjct: 62 YVKQ------KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 110
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +K G L +D LP+ + Q E +I + + MS EA++ Y+
Sbjct: 38 QFGPHNEQKHKAGFLDLKDFLPKEYVKQ------KGERKIFQAHKNCGQMSEIEAKVRYV 91
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 92 KLARSLKTYGVSFFLV 107
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 76 VTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQR 135
V +L ++Q + IL+ + + A + Q ++G +++ +K G L +D LP+
Sbjct: 27 VQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKE 86
Query: 136 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNK 190
+ Q E +I + + MS EA++ Y+K+A+ L YGV++F + K
Sbjct: 87 YVKQ------KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 135
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +K G L +D LP+ + Q E +I + + MS EA++ Y+
Sbjct: 63 QFGPHNEQKHKAGFLDLKDFLPKEYVKQ------KGERKIFQAHKNCGQMSEIEAKVRYV 116
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 117 KLARSLKTYGVSFFLV 132
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 71 ELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASED 130
+L +++T++ LQ++Q I++ + C LL SY +Q++ GDYD + ++
Sbjct: 8 QLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFK 67
Query: 131 LLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 179
L P + T E+ E+++ + +R M+ +A++E+L+ A+ L M
Sbjct: 68 LAPNQ-------TKEL-EEKVMELHKSYRSMTPAQADLEFLENAKKLSM 108
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 95 YCPPEASVL-LASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKI 153
Y P+A ++ LAS +Q YG+Y+ +K G L E+L + + + W +RI
Sbjct: 130 YTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILH 189
Query: 154 WY---ADHRGMSRDEAEME--YLKIAQDLDMYGVNYF--------PISNKKDTDLWLGVT 200
Y + G+S++ ++ +L+ ++ YG +F SN K +++GV
Sbjct: 190 EYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVN 249
Query: 201 ALGLNIYEKENK 212
GL++ E K
Sbjct: 250 IKGLHLLNMETK 261
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 254 RMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTP 313
R N L G Y K LAS LL YG+Y+ +K G L E+L + + +
Sbjct: 122 RYNLLKGFYTAPDAKLITLASL-LLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKA 180
Query: 314 EMWEDRIKIWY---ADHRGMSRDEAEME--YLKIAQDLDMYGVNYF 354
W +RI Y + G+S++ ++ +L+ ++ YG +F
Sbjct: 181 PHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFF 226
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 95 YCPPEASVL-LASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKI 153
Y P+A ++ LAS +Q YG+Y+ +K G L E+L + + + W +RI
Sbjct: 130 YTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILH 189
Query: 154 WYAD---HRGMSRDEAEME--YLKIAQDLDMYGVNYF--------PISNKKDTDLWLGVT 200
Y + G+S++ ++ +L+ ++ YG +F SN K +++GV
Sbjct: 190 EYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVN 249
Query: 201 ALGLNIYEKENK 212
GL++ E K
Sbjct: 250 IKGLHLLNMETK 261
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 254 RMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTP 313
R N L G Y K LAS LL YG+Y+ +K G L E+L + + +
Sbjct: 122 RYNLLKGFYTAPDAKLITLASL-LLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKA 180
Query: 314 EMWEDRIKIWYAD---HRGMSRDEAEME--YLKIAQDLDMYGVNYF 354
W +RI Y + G+S++ ++ +L+ ++ YG +F
Sbjct: 181 PHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFF 226
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 56 PFMFLAKFYAEDVAEELVQEVTQHLF-FLQVKQAILSMDIYCPPEASVLLASYAVQAKYG 114
P+ F K Y + + ++ + F F Q +A++ P E +LA+ +Q G
Sbjct: 281 PWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQG 340
Query: 115 DYDDSTYKPGMLASEDLLPQRV---IDQYQMTP--EMW------EDRIKIW--YADHRGM 161
DY P + L QR+ I Q T +MW R I + +GM
Sbjct: 341 DYTLHAAIPPLEEVYSL--QRLKARISQSTKTQMLDMWIKEEVSSARASIIDKWRKFQGM 398
Query: 162 SRDEAEMEYLKIAQDLDMYGVNYFPISNKKDT---DLWLGVTALGLNIYEKENKLTPKTT 218
++++A +Y+ + ++ YG F + K+ +LWLGV+A +++Y K + P
Sbjct: 399 NQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVY-KRGEGRPLEV 457
Query: 219 FPWSEI 224
F + I
Sbjct: 458 FQYEHI 463
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 159 RGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDT---DLWLGVTALGLNIYEK 209
+GM++++A +Y+ + ++ YG F + K+ +LWLGV+A +++Y++
Sbjct: 429 QGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKR 482
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 20 ETWYFGLQYE-DNK--GFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEV 76
+TW+ G++Y+ NK GFI+ + D + + I ++ +A L++E+
Sbjct: 97 KTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEI 156
Query: 77 TQHLFFLQVKQAILSMDIYCPPEAS 101
T+ + + QAI + +Y P S
Sbjct: 157 TRRINLENIWQAIYTAGVYLPKPVS 181
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 20 ETWYFGLQYE-DNK--GFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEV 76
+TW+ G++Y+ NK GFI+ + D + + I ++ +A L++E+
Sbjct: 98 KTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEI 157
Query: 77 TQHLFFLQVKQAILSMDIYCPPEAS 101
T+ + + QAI + +Y P S
Sbjct: 158 TRRINLENIWQAIYTAGVYLPKPVS 182
>pdb|3QY9|A Chain A, The Crystal Structure Of Dihydrodipicolinate Reductase
From Staphylococcus Aureus
pdb|3QY9|B Chain B, The Crystal Structure Of Dihydrodipicolinate Reductase
From Staphylococcus Aureus
pdb|3QY9|C Chain C, The Crystal Structure Of Dihydrodipicolinate Reductase
From Staphylococcus Aureus
pdb|3QY9|D Chain D, The Crystal Structure Of Dihydrodipicolinate Reductase
From Staphylococcus Aureus
Length = 243
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 214 TPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIF 248
TPK T P+ + +HI+ D K +D S+PN +F
Sbjct: 36 TPKATTPYQQYQHIA--DVKGADVAIDFSNPNLLF 68
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 305 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIG 364
V Q+ +TP + E A++ R++ E++ ++ + + + + P++ + G
Sbjct: 188 VARQFNLTPPICEQ------AEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC-GIVSG 240
Query: 365 NHDLFMRRRKPDTME-IQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLV 423
+D + +++ Q +K + E+ RRQ A+ K+L+ AER C + Q +
Sbjct: 241 KYDSGIPPYSRASLKGYQWLKDKILSEEGRRQ-----QAKLKELQAIAERLGCTLPQLAI 295
Query: 424 QYQEEIRLANEALKCVKVSEREA 446
+ L NE + V + A
Sbjct: 296 AWC----LRNEGVSSVLLGASNA 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,257,585
Number of Sequences: 62578
Number of extensions: 618104
Number of successful extensions: 1825
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1679
Number of HSP's gapped (non-prelim): 129
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)