Query psy586
Match_columns 472
No_of_seqs 329 out of 1404
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:53:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3529|consensus 100.0 5.5E-63 1.2E-67 524.3 18.3 367 1-466 31-417 (596)
2 KOG3530|consensus 100.0 1.8E-49 3.9E-54 407.1 20.6 255 1-268 29-299 (616)
3 KOG0792|consensus 100.0 6E-36 1.3E-40 323.2 15.2 250 2-256 42-296 (1144)
4 KOG3527|consensus 100.0 7.4E-35 1.6E-39 308.8 14.0 241 2-256 51-295 (975)
5 smart00295 B41 Band 4.1 homolo 100.0 4E-32 8.6E-37 256.9 18.8 184 1-185 22-207 (207)
6 KOG3529|consensus 100.0 6.9E-34 1.5E-38 302.4 2.7 244 164-423 33-339 (596)
7 KOG3530|consensus 100.0 8.4E-34 1.8E-38 291.8 2.4 204 173-401 40-259 (616)
8 KOG3531|consensus 100.0 1.4E-31 3E-36 282.2 0.0 352 1-393 58-418 (1036)
9 KOG3527|consensus 99.9 1.5E-28 3.3E-33 261.1 6.2 204 170-398 58-276 (975)
10 PF00373 FERM_M: FERM central 99.9 3.4E-23 7.5E-28 180.7 14.5 112 72-185 5-126 (126)
11 KOG0792|consensus 99.9 2.4E-24 5.2E-29 233.7 7.5 220 159-398 44-277 (1144)
12 KOG4261|consensus 99.8 1.2E-22 2.5E-27 213.4 -0.8 231 2-242 104-372 (1003)
13 KOG3531|consensus 99.8 2E-21 4.3E-26 205.8 4.4 209 167-398 63-283 (1036)
14 PF00373 FERM_M: FERM central 99.7 3.1E-17 6.7E-22 143.0 7.2 106 246-354 11-126 (126)
15 smart00295 B41 Band 4.1 homolo 99.6 1.4E-15 3.1E-20 143.5 8.9 128 226-354 77-207 (207)
16 KOG0248|consensus 99.6 3.8E-16 8.2E-21 163.0 4.6 207 55-275 674-894 (936)
17 KOG4371|consensus 99.6 8.3E-16 1.8E-20 166.4 7.3 243 6-252 531-798 (1332)
18 PF09379 FERM_N: FERM N-termin 99.5 2.1E-14 4.5E-19 115.5 7.3 65 1-65 15-80 (80)
19 KOG3552|consensus 99.5 9E-14 2E-18 149.3 9.6 204 2-207 203-430 (1298)
20 cd00836 FERM_C FERM_C domain. 99.5 1.5E-13 3.2E-18 113.9 7.5 77 179-258 1-79 (92)
21 KOG4371|consensus 99.5 1.5E-14 3.2E-19 156.9 1.7 146 248-396 615-784 (1332)
22 KOG3727|consensus 99.3 1.4E-12 3.1E-17 134.3 6.5 126 127-258 501-630 (664)
23 KOG4261|consensus 99.1 4.9E-11 1.1E-15 126.7 2.2 105 245-357 210-314 (1003)
24 PF09380 FERM_C: FERM C-termin 98.9 1.7E-09 3.7E-14 89.0 6.6 69 189-258 1-70 (90)
25 cd00836 FERM_C FERM_C domain. 98.3 2.5E-08 5.5E-13 82.4 -3.6 48 348-398 1-60 (92)
26 KOG4257|consensus 98.3 2E-06 4.2E-11 91.4 9.3 222 4-228 24-275 (974)
27 KOG3784|consensus 98.0 8.8E-05 1.9E-09 75.0 14.1 174 2-230 127-315 (407)
28 cd00435 ACBP Acyl CoA binding 97.6 0.00046 1E-08 56.2 9.1 81 81-181 4-85 (85)
29 PF00887 ACBP: Acyl CoA bindin 97.4 0.001 2.2E-08 54.3 8.1 76 82-177 5-82 (87)
30 PTZ00458 acyl CoA binding prot 96.3 0.032 7E-07 45.8 9.0 79 82-180 5-86 (90)
31 KOG4335|consensus 96.1 0.0019 4.1E-08 67.3 0.7 158 52-212 324-497 (558)
32 PF09380 FERM_C: FERM C-termin 96.0 0.00034 7.3E-09 57.4 -4.5 48 349-397 3-51 (90)
33 PF00769 ERM: Ezrin/radixin/mo 95.9 0.037 8E-07 54.1 8.8 47 409-455 1-47 (246)
34 KOG3727|consensus 95.4 0.02 4.2E-07 60.6 5.0 284 34-356 238-559 (664)
35 KOG0817|consensus 95.1 0.098 2.1E-06 46.6 7.6 84 81-184 8-92 (142)
36 KOG0248|consensus 95.0 0.0058 1.3E-07 65.8 -0.4 128 226-357 675-805 (936)
37 COG4281 ACB Acyl-CoA-binding p 94.8 0.15 3.3E-06 39.9 7.1 79 80-178 4-82 (87)
38 KOG4335|consensus 94.8 0.029 6.3E-07 58.8 4.0 244 60-354 204-463 (558)
39 KOG3552|consensus 93.7 0.031 6.7E-07 62.2 1.8 110 246-357 285-407 (1298)
40 cd00435 ACBP Acyl CoA binding 93.6 0.17 3.8E-06 41.1 5.5 67 263-350 18-85 (85)
41 PF00887 ACBP: Acyl CoA bindin 92.7 0.19 4E-06 40.9 4.4 63 262-346 19-82 (87)
42 PF00788 RA: Ras association ( 92.1 0.42 9.1E-06 38.7 5.9 62 1-62 25-91 (93)
43 cd01776 Rin1_RA Ubiquitin doma 92.0 0.33 7.1E-06 38.8 4.8 40 1-41 22-61 (87)
44 KOG2412|consensus 91.8 2.4 5.1E-05 45.3 12.3 61 404-464 212-272 (591)
45 PLN03086 PRLI-interacting fact 90.7 1.2 2.7E-05 48.4 9.2 51 398-451 9-59 (567)
46 PRK06568 F0F1 ATP synthase sub 90.2 9.6 0.00021 34.6 13.2 45 375-424 23-67 (154)
47 PRK06569 F0F1 ATP synthase sub 88.6 8.5 0.00018 34.9 11.6 81 376-464 30-110 (155)
48 smart00314 RA Ras association 88.6 1.6 3.5E-05 35.4 6.5 62 1-62 24-89 (90)
49 KOG1029|consensus 88.1 4.1 8.8E-05 45.3 10.7 15 376-390 312-326 (1118)
50 PF02174 IRS: PTB domain (IRS- 87.6 1.6 3.5E-05 36.4 6.0 59 193-252 22-83 (100)
51 KOG0163|consensus 86.6 9.5 0.00021 42.5 12.4 10 339-348 852-861 (1259)
52 PRK14475 F0F1 ATP synthase sub 86.6 17 0.00036 33.2 12.7 24 402-425 51-74 (167)
53 cd01203 DOK_PTB Downstream of 86.1 1.9 4.2E-05 36.2 5.5 60 193-253 21-83 (104)
54 KOG1029|consensus 85.9 9 0.0002 42.8 11.8 9 425-433 362-370 (1118)
55 PRK07353 F0F1 ATP synthase sub 85.8 17 0.00037 31.9 12.0 21 403-423 47-67 (140)
56 KOG3878|consensus 85.3 1.4 3E-05 44.1 5.0 66 94-177 51-117 (469)
57 PRK14472 F0F1 ATP synthase sub 85.2 17 0.00036 33.5 12.0 43 376-423 38-80 (175)
58 cd01777 SNX27_RA Ubiquitin dom 84.8 1.4 3E-05 35.9 3.9 30 2-31 21-52 (87)
59 CHL00118 atpG ATP synthase CF0 84.6 20 0.00043 32.4 12.0 15 376-390 42-56 (156)
60 PTZ00458 acyl CoA binding prot 84.6 2.2 4.9E-05 35.0 5.2 61 264-346 21-82 (90)
61 PRK09174 F0F1 ATP synthase sub 84.5 24 0.00053 33.4 13.0 15 376-390 73-87 (204)
62 PRK13460 F0F1 ATP synthase sub 84.4 19 0.00042 33.0 12.0 22 375-396 35-56 (173)
63 CHL00019 atpF ATP synthase CF0 84.2 19 0.00041 33.4 12.0 25 374-398 42-66 (184)
64 PF11068 YlqD: YlqD protein; 84.1 18 0.00039 31.8 11.0 62 407-468 21-86 (131)
65 cd00824 PTBI IRS-like phosphot 83.8 2.7 5.8E-05 35.5 5.5 59 193-252 21-82 (104)
66 PTZ00121 MAEBL; Provisional 83.4 14 0.00029 44.3 12.3 27 85-111 700-726 (2084)
67 CHL00019 atpF ATP synthase CF0 83.3 30 0.00066 32.0 13.0 36 412-447 68-103 (184)
68 PRK13460 F0F1 ATP synthase sub 83.2 32 0.0007 31.5 13.0 26 402-427 57-82 (173)
69 cd01768 RA RA (Ras-associating 83.1 3.8 8.3E-05 32.8 6.0 61 1-61 21-86 (87)
70 PRK13454 F0F1 ATP synthase sub 83.0 26 0.00056 32.5 12.3 17 376-392 51-67 (181)
71 PRK06231 F0F1 ATP synthase sub 82.8 31 0.00067 32.7 13.0 24 375-398 67-90 (205)
72 PRK14474 F0F1 ATP synthase sub 82.7 21 0.00045 35.0 12.1 22 375-396 24-45 (250)
73 PRK13454 F0F1 ATP synthase sub 82.6 32 0.0007 31.9 12.8 8 389-396 49-56 (181)
74 PRK13453 F0F1 ATP synthase sub 82.5 26 0.00056 32.2 12.0 22 375-396 37-58 (173)
75 PRK06231 F0F1 ATP synthase sub 82.4 24 0.00052 33.5 12.0 26 400-425 87-112 (205)
76 PRK05759 F0F1 ATP synthase sub 82.3 28 0.0006 31.1 12.0 24 375-398 23-46 (156)
77 PRK09174 F0F1 ATP synthase sub 81.9 30 0.00065 32.8 12.5 33 409-441 94-126 (204)
78 PRK14472 F0F1 ATP synthase sub 81.7 40 0.00087 30.9 13.0 69 388-456 35-106 (175)
79 PRK14475 F0F1 ATP synthase sub 81.5 42 0.00092 30.6 13.2 26 411-436 53-78 (167)
80 PRK14471 F0F1 ATP synthase sub 81.1 31 0.00068 31.2 12.0 22 375-396 27-48 (164)
81 PRK13453 F0F1 ATP synthase sub 81.0 43 0.00094 30.7 13.0 24 402-425 59-82 (173)
82 PRK14473 F0F1 ATP synthase sub 80.5 34 0.00074 31.0 12.0 22 375-396 27-48 (164)
83 TIGR03321 alt_F1F0_F0_B altern 80.5 27 0.00059 34.0 12.0 46 375-425 24-69 (246)
84 PRK07352 F0F1 ATP synthase sub 80.1 35 0.00075 31.3 12.0 23 375-397 38-60 (174)
85 smart00310 PTBI Phosphotyrosin 79.7 5.6 0.00012 33.2 5.8 58 194-252 21-81 (98)
86 PRK08476 F0F1 ATP synthase sub 79.5 44 0.00096 29.6 12.5 42 376-422 27-68 (141)
87 PRK08475 F0F1 ATP synthase sub 79.3 40 0.00087 30.8 12.1 21 376-396 42-62 (167)
88 KOG2412|consensus 79.3 15 0.00033 39.4 10.2 27 402-428 217-243 (591)
89 PRK14471 F0F1 ATP synthase sub 79.0 50 0.0011 29.9 13.0 41 388-428 25-75 (164)
90 PRK13461 F0F1 ATP synthase sub 79.0 49 0.0011 29.8 13.0 24 375-398 24-47 (159)
91 PRK13461 F0F1 ATP synthase sub 78.5 44 0.00096 30.0 12.0 25 402-426 46-70 (159)
92 PRK07352 F0F1 ATP synthase sub 78.4 54 0.0012 30.0 13.0 26 399-424 57-82 (174)
93 PRK06569 F0F1 ATP synthase sub 77.0 39 0.00085 30.7 10.9 64 386-449 25-91 (155)
94 PRK13455 F0F1 ATP synthase sub 76.9 57 0.0012 30.2 12.6 15 407-421 73-87 (184)
95 TIGR03321 alt_F1F0_F0_B altern 76.7 58 0.0013 31.7 13.1 48 407-454 44-91 (246)
96 PRK14474 F0F1 ATP synthase sub 76.1 59 0.0013 31.8 12.9 24 402-425 46-69 (250)
97 PLN03086 PRLI-interacting fact 74.6 13 0.00028 40.7 8.4 22 399-420 25-46 (567)
98 PRK14473 F0F1 ATP synthase sub 73.9 69 0.0015 29.0 12.9 24 401-424 48-71 (164)
99 PRK06568 F0F1 ATP synthase sub 73.6 71 0.0015 29.0 12.4 62 389-450 22-86 (154)
100 PRK08475 F0F1 ATP synthase sub 73.4 74 0.0016 29.1 12.8 7 390-396 41-47 (167)
101 PRK13428 F0F1 ATP synthase sub 73.0 59 0.0013 34.7 12.9 24 375-398 20-43 (445)
102 CHL00118 atpG ATP synthase CF0 72.4 74 0.0016 28.6 12.9 22 375-396 24-47 (156)
103 PF09726 Macoilin: Transmembra 72.0 38 0.00082 38.3 11.6 16 169-184 192-208 (697)
104 PF05672 MAP7: MAP7 (E-MAP-115 71.9 65 0.0014 29.7 11.1 18 397-414 30-47 (171)
105 TIGR01144 ATP_synt_b ATP synth 71.8 71 0.0015 28.2 12.0 23 375-397 14-36 (147)
106 PRK13428 F0F1 ATP synthase sub 71.6 50 0.0011 35.2 12.0 23 402-424 42-64 (445)
107 cd01215 Dab Disabled (Dab) Pho 71.0 7.3 0.00016 34.6 4.6 81 189-273 49-132 (139)
108 cd06407 PB1_NLP A PB1 domain i 71.0 8 0.00017 31.1 4.5 34 1-34 18-51 (82)
109 PF00430 ATP-synt_B: ATP synth 70.5 64 0.0014 27.6 10.6 48 376-428 19-66 (132)
110 cd06409 PB1_MUG70 The MUG70 pr 68.6 8.3 0.00018 31.4 4.1 36 1-36 19-56 (86)
111 PRK09510 tolA cell envelope in 68.0 64 0.0014 33.7 11.4 6 377-382 63-68 (387)
112 PRK08476 F0F1 ATP synthase sub 67.7 76 0.0017 28.1 10.6 53 386-438 22-77 (141)
113 PRK07353 F0F1 ATP synthase sub 67.2 86 0.0019 27.4 12.8 40 411-450 48-87 (140)
114 PF02731 SKIP_SNW: SKIP/SNW do 67.1 22 0.00047 32.3 6.9 22 444-465 133-154 (158)
115 PRK13455 F0F1 ATP synthase sub 66.6 57 0.0012 30.2 10.0 41 408-448 67-107 (184)
116 KOG3859|consensus 66.2 1.4E+02 0.003 30.1 12.6 77 377-465 317-393 (406)
117 KOG4257|consensus 66.1 5.2 0.00011 44.0 3.1 112 242-356 112-232 (974)
118 PRK05759 F0F1 ATP synthase sub 66.0 97 0.0021 27.5 13.0 9 388-396 21-29 (156)
119 COG3064 TolA Membrane protein 65.9 1.3E+02 0.0029 30.3 12.5 35 409-443 104-138 (387)
120 PF00430 ATP-synt_B: ATP synth 65.5 86 0.0019 26.8 10.8 66 388-453 16-84 (132)
121 cd01202 FRS2 Fibroblast growth 65.2 23 0.0005 29.6 6.1 68 182-252 5-80 (102)
122 KOG0817|consensus 65.1 14 0.00031 32.9 5.3 31 323-353 61-92 (142)
123 TIGR01069 mutS2 MutS2 family p 64.4 64 0.0014 37.0 11.7 11 328-338 413-423 (771)
124 smart00462 PTB Phosphotyrosine 63.0 25 0.00055 30.2 6.5 41 189-230 40-80 (134)
125 PF15236 CCDC66: Coiled-coil d 62.9 1.2E+02 0.0026 27.6 11.0 37 424-462 112-148 (157)
126 cd00934 PTB Phosphotyrosine-bi 62.4 25 0.00054 29.6 6.3 50 189-239 38-90 (123)
127 TIGR01069 mutS2 MutS2 family p 62.2 79 0.0017 36.3 11.9 16 369-384 487-502 (771)
128 COG0711 AtpF F0F1-type ATP syn 61.4 1.3E+02 0.0028 27.3 12.9 19 374-392 24-42 (161)
129 cd01267 CED6_AIDA1b Phosphotyr 61.1 9.8 0.00021 33.3 3.6 38 190-228 42-79 (132)
130 PF00640 PID: Phosphotyrosine 60.1 23 0.0005 30.6 5.8 40 189-229 48-87 (140)
131 PRK00409 recombination and DNA 60.0 86 0.0019 36.0 11.7 15 370-384 493-507 (782)
132 cd06398 PB1_Joka2 The PB1 doma 59.9 25 0.00054 28.9 5.5 60 2-61 24-88 (91)
133 PF11470 TUG-UBL1: GLUT4 regul 59.8 13 0.00028 28.6 3.5 28 1-29 15-42 (65)
134 TIGR01144 ATP_synt_b ATP synth 59.7 1.2E+02 0.0027 26.6 12.9 24 401-424 35-58 (147)
135 KOG2077|consensus 59.6 51 0.0011 35.8 8.9 53 412-466 349-423 (832)
136 PRK00409 recombination and DNA 59.1 93 0.002 35.8 11.7 9 328-336 418-426 (782)
137 KOG4661|consensus 59.0 78 0.0017 34.4 10.1 14 385-398 600-613 (940)
138 PF14317 YcxB: YcxB-like prote 58.9 17 0.00037 26.4 4.1 37 199-239 1-37 (62)
139 PF12999 PRKCSH-like: Glucosid 58.2 68 0.0015 29.7 8.5 29 442-470 146-174 (176)
140 PTZ00121 MAEBL; Provisional 57.7 1.3E+02 0.0027 36.7 12.2 9 176-184 670-678 (2084)
141 PF06428 Sec2p: GDP/GTP exchan 57.5 89 0.0019 26.2 8.4 58 400-465 2-60 (100)
142 KOG4661|consensus 57.1 1.3E+02 0.0029 32.8 11.4 10 255-264 469-478 (940)
143 KOG1144|consensus 56.4 49 0.0011 37.4 8.4 7 269-275 113-119 (1064)
144 PF06637 PV-1: PV-1 protein (P 55.7 1.3E+02 0.0029 31.2 10.7 17 100-116 36-52 (442)
145 cd01268 Numb Numb Phosphotyros 55.7 35 0.00077 30.3 6.1 37 191-228 48-84 (138)
146 KOG3859|consensus 55.1 1.2E+02 0.0027 30.4 10.1 37 151-187 179-215 (406)
147 KOG3878|consensus 54.8 83 0.0018 31.9 9.0 63 262-343 51-114 (469)
148 PF11976 Rad60-SLD: Ubiquitin- 54.4 18 0.00038 27.7 3.6 49 1-54 19-67 (72)
149 COG4281 ACB Acyl-CoA-binding p 54.0 29 0.00063 27.5 4.5 57 270-347 24-82 (87)
150 KOG1144|consensus 53.5 52 0.0011 37.2 8.0 15 402-416 229-243 (1064)
151 PF06115 DUF956: Domain of unk 53.1 20 0.00044 30.8 4.0 58 199-258 29-92 (118)
152 COG3064 TolA Membrane protein 51.3 2.4E+02 0.0053 28.6 11.5 7 377-383 63-69 (387)
153 KOG2002|consensus 51.0 1.5E+02 0.0032 34.6 11.2 22 163-184 512-533 (1018)
154 COG0711 AtpF F0F1-type ATP syn 50.9 1.9E+02 0.0042 26.2 12.3 21 400-420 45-65 (161)
155 KOG2129|consensus 50.3 3E+02 0.0065 29.0 12.3 19 377-395 206-224 (552)
156 PF00769 ERM: Ezrin/radixin/mo 50.0 1.4E+02 0.003 29.2 9.9 17 449-465 75-91 (246)
157 KOG0994|consensus 49.9 1.4E+02 0.0031 35.4 10.9 19 399-417 1539-1557(1758)
158 PF07795 DUF1635: Protein of u 48.9 1.4E+02 0.0029 28.6 9.1 55 407-462 6-60 (214)
159 PF12718 Tropomyosin_1: Tropom 48.0 2E+02 0.0044 25.6 10.3 45 418-463 78-122 (143)
160 cd01269 PLX Pollux (PLX) Phosp 47.9 17 0.00037 31.6 2.7 51 191-242 41-94 (129)
161 COG4741 Predicted secreted end 47.8 2E+02 0.0043 26.0 9.4 22 444-465 58-79 (175)
162 PF09726 Macoilin: Transmembra 46.9 1E+02 0.0023 34.8 9.5 50 38-88 148-199 (697)
163 PRK09173 F0F1 ATP synthase sub 46.3 2.2E+02 0.0047 25.5 12.8 38 381-423 27-64 (159)
164 PF10480 ICAP-1_inte_bdg: Beta 46.2 79 0.0017 29.6 6.9 74 166-246 87-167 (200)
165 cd01274 AIDA-1b AIDA-1b Phosph 46.0 25 0.00053 30.8 3.5 37 190-230 38-74 (127)
166 PF06936 Selenoprotein_S: Sele 45.5 1.2E+02 0.0027 28.4 8.3 6 345-350 32-37 (190)
167 KOG2002|consensus 45.3 2.6E+02 0.0057 32.6 12.1 15 96-110 450-464 (1018)
168 PF02841 GBP_C: Guanylate-bind 44.5 2.9E+02 0.0062 27.6 11.5 28 81-108 13-40 (297)
169 TIGR03825 FliH_bacil flagellar 43.6 2.2E+02 0.0048 27.8 10.3 20 446-465 119-138 (255)
170 cd01807 GDX_N ubiquitin-like d 42.9 49 0.0011 25.5 4.5 54 1-60 19-72 (74)
171 KOG2891|consensus 42.7 2.3E+02 0.0051 28.1 9.8 11 455-465 406-416 (445)
172 PF05262 Borrelia_P83: Borreli 42.7 1.3E+02 0.0027 32.6 8.9 10 159-168 96-105 (489)
173 KOG2891|consensus 41.3 2.5E+02 0.0055 27.8 9.9 10 178-187 155-164 (445)
174 PRK11637 AmiB activator; Provi 41.3 2.5E+02 0.0054 29.6 10.9 23 414-436 76-98 (428)
175 PF00261 Tropomyosin: Tropomyo 40.3 3.5E+02 0.0075 26.1 11.3 48 417-465 138-185 (237)
176 KOG0742|consensus 40.2 3.6E+02 0.0078 28.8 11.2 11 381-391 88-98 (630)
177 KOG2689|consensus 40.2 2.1E+02 0.0046 28.4 9.1 62 379-441 79-141 (290)
178 PF12718 Tropomyosin_1: Tropom 40.2 2.7E+02 0.0058 24.8 9.3 22 446-467 119-140 (143)
179 PF02731 SKIP_SNW: SKIP/SNW do 40.0 1.2E+02 0.0026 27.7 6.9 14 439-452 143-156 (158)
180 PF07888 CALCOCO1: Calcium bin 39.7 3.2E+02 0.007 30.0 11.3 25 194-224 37-61 (546)
181 KOG0579|consensus 38.5 2.4E+02 0.0051 31.8 10.0 30 406-435 864-893 (1187)
182 TIGR01843 type_I_hlyD type I s 38.2 3.1E+02 0.0067 28.2 11.1 19 447-465 244-262 (423)
183 PF05008 V-SNARE: Vesicle tran 38.1 1.3E+02 0.0027 23.5 6.3 48 421-468 26-73 (79)
184 PRK10884 SH3 domain-containing 38.1 1.6E+02 0.0035 28.0 8.0 11 377-387 78-88 (206)
185 KOG0742|consensus 37.9 5.1E+02 0.011 27.7 11.9 14 442-455 202-215 (630)
186 KOG2391|consensus 37.9 1.7E+02 0.0038 29.9 8.4 37 425-465 233-269 (365)
187 PF04111 APG6: Autophagy prote 37.4 4.3E+02 0.0093 26.8 11.5 15 451-465 101-115 (314)
188 cd01779 Myosin_IXb_RA ubitquit 36.8 62 0.0014 26.8 4.2 41 2-42 34-75 (105)
189 KOG4571|consensus 36.7 2.8E+02 0.0061 27.8 9.5 14 189-202 39-52 (294)
190 PRK09173 F0F1 ATP synthase sub 36.7 3.1E+02 0.0067 24.5 11.3 42 407-448 41-82 (159)
191 cd01273 CED-6 CED-6 Phosphotyr 36.2 1.1E+02 0.0025 27.0 6.3 36 191-230 53-88 (142)
192 KOG2072|consensus 35.7 2.7E+02 0.0058 32.0 10.1 40 424-463 603-643 (988)
193 PF05278 PEARLI-4: Arabidopsis 35.3 3.7E+02 0.008 26.7 10.1 17 425-441 212-228 (269)
194 PF11543 UN_NPL4: Nuclear pore 35.0 30 0.00066 27.6 2.2 51 1-53 22-73 (80)
195 PF03962 Mnd1: Mnd1 family; I 34.8 1.9E+02 0.004 27.1 7.8 15 456-470 135-149 (188)
196 TIGR03185 DNA_S_dndD DNA sulfu 34.6 2.3E+02 0.0051 31.7 9.9 20 446-465 266-285 (650)
197 cd01787 GRB7_RA RA (RAS-associ 33.9 1.2E+02 0.0025 24.7 5.3 60 2-61 22-84 (85)
198 PF10376 Mei5: Double-strand r 33.7 3.1E+02 0.0068 26.4 9.2 55 412-466 137-195 (221)
199 PF10756 bPH_6: Bacterial PH d 33.7 72 0.0016 24.6 4.1 35 197-235 4-38 (73)
200 PF00240 ubiquitin: Ubiquitin 33.3 98 0.0021 23.1 4.8 55 1-61 14-68 (69)
201 PF14470 bPH_3: Bacterial PH d 32.4 1.7E+02 0.0038 23.2 6.4 47 192-238 21-72 (96)
202 PF15188 CCDC-167: Coiled-coil 31.6 1.7E+02 0.0037 23.8 5.9 48 418-465 10-59 (85)
203 KOG1265|consensus 30.8 3.5E+02 0.0077 31.4 10.0 10 107-116 658-667 (1189)
204 PF10168 Nup88: Nuclear pore c 29.9 8.8E+02 0.019 27.7 13.9 17 375-391 532-548 (717)
205 cd01798 parkin_N amino-termina 29.9 92 0.002 23.6 4.1 53 1-59 17-69 (70)
206 PF12128 DUF3584: Protein of u 29.7 3.5E+02 0.0077 32.8 10.9 17 81-97 122-138 (1201)
207 COG1579 Zn-ribbon protein, pos 29.7 5.4E+02 0.012 25.1 10.2 73 398-472 37-112 (239)
208 KOG0288|consensus 29.6 5.5E+02 0.012 27.1 10.5 27 418-444 53-79 (459)
209 cd01775 CYR1_RA Ubiquitin doma 29.3 1E+02 0.0022 25.7 4.3 41 1-42 21-61 (97)
210 PF05262 Borrelia_P83: Borreli 29.1 2.8E+02 0.006 30.0 8.8 8 267-274 101-108 (489)
211 cd05992 PB1 The PB1 domain is 29.0 1.1E+02 0.0023 23.7 4.5 33 2-35 20-52 (81)
212 cd06396 PB1_NBR1 The PB1 domai 29.0 94 0.002 25.0 4.0 30 2-34 21-50 (81)
213 PF13094 CENP-Q: CENP-Q, a CEN 28.9 4.2E+02 0.0092 23.7 9.0 30 417-446 38-67 (160)
214 KOG4722|consensus 28.8 4.1E+02 0.009 28.0 9.5 46 421-468 273-318 (672)
215 cd01806 Nedd8 Nebb8-like ubiq 28.5 1.5E+02 0.0032 22.5 5.1 54 1-60 19-72 (76)
216 PF06936 Selenoprotein_S: Sele 28.4 5E+02 0.011 24.4 9.7 6 424-429 91-96 (190)
217 cd01808 hPLIC_N Ubiquitin-like 28.3 1.2E+02 0.0025 23.1 4.5 53 1-59 18-70 (71)
218 smart00666 PB1 PB1 domain. Pho 28.2 1.1E+02 0.0025 23.7 4.5 32 2-34 20-51 (81)
219 PF06810 Phage_GP20: Phage min 28.1 4.5E+02 0.0097 23.7 9.6 34 432-465 52-85 (155)
220 KOG2072|consensus 27.1 9.6E+02 0.021 27.8 12.5 31 406-436 670-700 (988)
221 cd01270 DYC-1 DYC-1 (DYB-1 bin 27.1 80 0.0017 28.2 3.7 35 188-223 38-72 (140)
222 cd01782 AF6_RA_repeat1 Ubiquit 26.8 1.2E+02 0.0027 25.7 4.5 39 1-39 44-86 (112)
223 cd01810 ISG15_repeat2 ISG15 ub 26.3 1.5E+02 0.0033 22.7 4.8 54 1-60 17-70 (74)
224 PF11471 Sugarporin_N: Maltopo 26.1 1.6E+02 0.0034 22.3 4.6 23 416-438 28-50 (60)
225 PF12999 PRKCSH-like: Glucosid 25.9 4.5E+02 0.0099 24.4 8.5 6 358-363 95-100 (176)
226 COG4191 Signal transduction hi 25.7 8.9E+02 0.019 26.9 11.8 83 377-469 296-379 (603)
227 PF07246 Phlebovirus_NSM: Phle 25.6 5.3E+02 0.012 25.5 9.3 15 421-435 176-190 (264)
228 KOG2505|consensus 25.4 2.3E+02 0.0049 30.6 7.1 29 407-435 506-536 (591)
229 KOG3231|consensus 25.3 3.1E+02 0.0067 25.1 7.0 41 392-432 8-48 (208)
230 PF04111 APG6: Autophagy prote 25.2 7E+02 0.015 25.2 10.6 11 452-462 116-126 (314)
231 KOG2962|consensus 25.0 6.5E+02 0.014 24.5 9.9 26 388-413 180-205 (322)
232 PF04568 IATP: Mitochondrial A 24.6 3.6E+02 0.0077 22.6 6.9 7 391-397 64-70 (100)
233 KOG4364|consensus 24.5 7.2E+02 0.016 28.0 10.8 6 133-138 13-18 (811)
234 smart00455 RBD Raf-like Ras-bi 24.4 1.1E+02 0.0024 23.7 3.7 29 1-30 18-46 (70)
235 KOG2264|consensus 23.9 4.4E+02 0.0095 29.0 8.9 49 417-465 97-148 (907)
236 cd06408 PB1_NoxR The PB1 domai 23.7 1.4E+02 0.0031 24.2 4.3 31 1-34 20-50 (86)
237 cd01784 rasfadin_RA Ubiquitin- 23.3 1.4E+02 0.003 24.4 4.0 35 1-35 21-56 (87)
238 KOG0982|consensus 23.1 7.6E+02 0.017 26.2 10.2 20 449-468 353-372 (502)
239 TIGR03752 conj_TIGR03752 integ 23.1 4.4E+02 0.0095 28.4 8.8 18 448-465 122-139 (472)
240 PLN02316 synthase/transferase 22.8 3.1E+02 0.0067 32.7 8.3 40 163-202 121-163 (1036)
241 cd01797 NIRF_N amino-terminal 22.6 1.8E+02 0.004 22.8 4.7 54 1-60 21-74 (78)
242 PF15619 Lebercilin: Ciliary p 22.5 4.1E+02 0.0089 25.0 7.8 14 452-465 121-134 (194)
243 cd01792 ISG15_repeat1 ISG15 ub 22.4 2.5E+02 0.0054 21.9 5.4 56 1-60 21-76 (80)
244 cd06404 PB1_aPKC PB1 domain is 22.3 1.9E+02 0.004 23.5 4.6 45 1-45 18-62 (83)
245 PF09805 Nop25: Nucleolar prot 22.3 3.7E+02 0.0081 23.7 7.0 9 388-396 20-28 (137)
246 KOG2507|consensus 22.2 1.7E+02 0.0037 30.8 5.5 46 399-444 207-256 (506)
247 cd01212 JIP JNK-interacting pr 22.1 1.1E+02 0.0024 27.5 3.7 41 190-230 42-84 (148)
248 cd01763 Sumo Small ubiquitin-r 22.0 2.5E+02 0.0053 22.4 5.4 54 1-60 30-83 (87)
249 cd00900 PH-like Pleckstrin hom 21.9 2.7E+02 0.0058 21.0 5.6 61 191-252 18-85 (99)
250 cd01216 Fe65 Fe65 Phosphotyros 21.8 1.1E+02 0.0023 26.6 3.4 38 190-228 37-74 (123)
251 KOG3584|consensus 21.6 2.3E+02 0.005 28.3 5.9 48 390-439 291-338 (348)
252 cd01801 Tsc13_N Ubiquitin-like 21.6 2.7E+02 0.0059 21.6 5.5 55 1-60 21-75 (77)
253 cd01793 Fubi Fubi ubiquitin-li 21.5 2.1E+02 0.0045 21.9 4.8 54 1-60 17-70 (74)
254 COG1422 Predicted membrane pro 21.2 2.2E+02 0.0047 27.0 5.5 8 425-432 84-91 (201)
255 PF08826 DMPK_coil: DMPK coile 21.2 3.7E+02 0.0081 20.4 6.8 19 447-465 37-55 (61)
256 TIGR01147 V_ATP_synt_G vacuola 21.1 5.3E+02 0.012 22.1 8.2 7 457-463 80-86 (113)
257 KOG3784|consensus 21.0 32 0.0007 35.7 -0.0 25 332-356 243-267 (407)
258 smart00213 UBQ Ubiquitin homol 21.0 1.3E+02 0.0029 21.6 3.5 44 1-50 18-61 (64)
259 COG4942 Membrane-bound metallo 20.8 8.7E+02 0.019 25.8 10.3 49 415-464 61-109 (420)
260 COG4985 ABC-type phosphate tra 20.8 3.5E+02 0.0076 26.3 6.8 40 317-356 75-118 (289)
261 cd01818 TIAM1_RBD Ubiquitin do 20.7 81 0.0017 25.1 2.1 24 1-24 18-41 (77)
262 KOG1363|consensus 20.6 3.3E+02 0.0072 29.3 7.4 15 444-458 347-361 (460)
263 PF10669 Phage_Gp23: Protein g 20.6 5E+02 0.011 21.6 6.9 18 403-420 49-66 (121)
264 KOG1003|consensus 20.6 7.3E+02 0.016 23.5 9.9 43 418-461 107-149 (205)
265 PF11214 Med2: Mediator comple 20.5 2.1E+02 0.0045 24.2 4.6 13 384-396 66-78 (105)
266 PTZ00044 ubiquitin; Provisiona 20.4 2E+02 0.0043 21.9 4.5 54 1-60 19-72 (76)
267 PF12128 DUF3584: Protein of u 20.2 6.9E+02 0.015 30.4 10.9 9 100-108 160-168 (1201)
No 1
>KOG3529|consensus
Probab=100.00 E-value=5.5e-63 Score=524.29 Aligned_cols=367 Identities=63% Similarity=1.041 Sum_probs=337.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
|++||++||+.||+++||+|+|||||+|+|+++...||++++++..|++++..|+.|+|+++|||+++.+++++++|.+|
T Consensus 31 ~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~~t~~L 110 (596)
T KOG3529|consen 31 PKTTGKQLFDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDKKVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQDITQHL 110 (596)
T ss_pred cchhHHHHHHHHhccCCCchhhhcccccccCCCCcchhhccchhhhhhcCCCCCcceeeeeecchHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999988899999999999999988999999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
||+|||..||++.++|++|++++||||+||+.+|||+.+.|..+++....+||.+++++|+||.++|+.+|..||.+|.|
T Consensus 111 ffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~ 190 (596)
T KOG3529|consen 111 FFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRG 190 (596)
T ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
|++++|+++||++++++||||++||+++|+.|+..||||+..|+++|+..++.+|...|||++|+|++|++++|.|+++|
T Consensus 191 ~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~id 270 (596)
T KOG3529|consen 191 MTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPID 270 (596)
T ss_pred hhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH
Q psy586 241 KSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI 320 (472)
Q Consensus 241 ~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I 320 (472)
+..++|.|+.+.+++|.+
T Consensus 271 ~~~~~f~~~~~~~~~~~~-------------------------------------------------------------- 288 (596)
T KOG3529|consen 271 KKASDFSFYAPRLRINKR-------------------------------------------------------------- 288 (596)
T ss_pred cccCcccccccccccchh--------------------------------------------------------------
Confidence 999999999999999888
Q ss_pred HHHHHhccCCChhHHHHHHHHHhhhccccCcceeecceeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhHHhh
Q psy586 321 KIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNK 400 (472)
Q Consensus 321 ~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~~~~ 400 (472)
+++.|+|+|.+.++++.+.+.+..++-...+..-.+++.++.+
T Consensus 289 -------------------------------------~l~~~~~~~~l~~rr~~~~ti~vqq~~~~a~~~k~~~~~e~~~ 331 (596)
T KOG3529|consen 289 -------------------------------------ILDLCMGNHELYMRRRKPDTIEVQQMKAQAREEKARKQLERAK 331 (596)
T ss_pred -------------------------------------hhhhhhccchhhhhcccccccchhhccccccchHHHHHHhhhh
Confidence 7888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHh
Q psy586 401 LAREKQLREAAEREKC-------AMEQRLVQYQEEIRLANEALKCVKV-------------SEREAAEREKCAMEQRLVQ 460 (472)
Q Consensus 401 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 460 (472)
+..+...|+.++.+.. +++-++.|+++.+..+.+++..... .....+|+++.++++-..+
T Consensus 332 ~~~~~~~re~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~E~~~~~l~~~a~~le~e~~rL~e~~~~ 411 (596)
T KOG3529|consen 332 LEREKKKRETGEKEGSELERLKEELQGRMAQAQEDVERARRELAEASRKARDLEEERKLLKKEASELEAERPRLEELKQK 411 (596)
T ss_pred hhHHHhhhhhcccccCcccccchhhhhhhhhhhHHHHHhhhcchhhcccccCccchhhhhhhhHhhhhhhhhHHHHHHHH
Confidence 9999999998887754 5666777777777776665542111 1233455555566666666
Q ss_pred HHHHHH
Q psy586 461 YQEEIR 466 (472)
Q Consensus 461 ~~~~~~ 466 (472)
+++|..
T Consensus 412 le~e~~ 417 (596)
T KOG3529|consen 412 LEEEKH 417 (596)
T ss_pred HHHHhh
Confidence 666653
No 2
>KOG3530|consensus
Probab=100.00 E-value=1.8e-49 Score=407.08 Aligned_cols=255 Identities=31% Similarity=0.537 Sum_probs=233.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
+++.|++|||.||-.|.|.|++||||+|+|.....+|||+.|+|.+| ++.++|+.|+||||||+.++.. |.++.||++
T Consensus 29 k~akGq~Lld~V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~I~kq-vK~gppytL~~rVKfY~sdP~~-Lree~tRYq 106 (616)
T KOG3530|consen 29 KTAKGQELLDYVFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKSIKKQ-VKIGPPYTLHLRVKFYPSDPNN-LREENTRYQ 106 (616)
T ss_pred cccchHHHHHHHHHhhceeeeeccceeeechhhcceecCcchhHHHH-hccCCCeEEEEEEEeccCChhh-hhchhhHHH
Confidence 46889999999999999999999999999999999999999999999 5788999999999999999996 999999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
||+|+|+|||.|+++||.++|++||||++|+++||||+..|+++|++..+|+|.+ .+.+|.+|.+.|++++|
T Consensus 107 fflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Q--------te~LE~~I~e~hK~~rG 178 (616)
T KOG3530|consen 107 FFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQ--------TEELEERIFELHKELRG 178 (616)
T ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccc--------cHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999984 35699999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
+|+++||+.||..|..|+|||++.+.|+..+|.+..||+++.||.||+...++ ..|-|++|.++.|.+++|.+.+.+
T Consensus 179 qspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~ki---g~f~WpkI~KvdFk~kk~~L~v~e 255 (616)
T KOG3530|consen 179 QSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKI---GLFFWPKITKVDFKGKKFTLVVSE 255 (616)
T ss_pred CCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCcee---eEEecchheEeeccCcEEEEEEee
Confidence 99999999999999999999999999999999999999999999999988874 789999999999999999999964
Q ss_pred CC-C-----Cceeeehhhhhhh-hhc---------CcccCCCcc
Q psy586 241 KS-S-----PNFIFFSLKVRMN-KLY---------GDYDDSTYK 268 (472)
Q Consensus 241 ~~-~-----~~~vF~t~q~r~~-~l~---------g~l~c~~~~ 268 (472)
.. + ++|+|-.+..+.. .++ -||+|+...
T Consensus 256 dd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~~~ 299 (616)
T KOG3530|consen 256 DDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPVSS 299 (616)
T ss_pred ccccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCccc
Confidence 43 2 4788886663322 232 278888543
No 3
>KOG0792|consensus
Probab=100.00 E-value=6e-36 Score=323.15 Aligned_cols=250 Identities=32% Similarity=0.555 Sum_probs=213.5
Q ss_pred cccHHHHHHHHHHHhCCCccCcee-EEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFG-LQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FG-L~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
..||+++++.||.+|+++|..||| +++.++.+...|+|++|.+.+|+.+...+..++|||+||+.++.. |.++.||++
T Consensus 42 es~gQ~~ld~V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~lkkql~k~a~~p~l~frV~fyV~~p~~-LqeE~TRyq 120 (1144)
T KOG0792|consen 42 ESTGQELLDAVAQRLELREKEYFGLLWSPDKPDQIRWVDLEKPLKKQLIKVANPPLLHFRVKFYVPDPSG-LQEEATRYQ 120 (1144)
T ss_pred CCCchhHHHHHhhhhcccccccccccccCCccCccceeccchhHHHhhhccCCCceEEEEEEEEecChhH-HHHHHHHHH
Confidence 468999999999999999999999 446667788999999999999998877788999999999999987 999999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
+|+|||.||+.|+++|+.++|++||+|++||+||||+...+..+ +.-..++|.....- .--.++.+++|.+.|+.|.|
T Consensus 121 yylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~~~-l~~~~~~p~~~~~~-~n~~~e~~~kVa~lhQ~h~G 198 (1144)
T KOG0792|consen 121 YYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQDG-LEYLSVFPQCTLQD-ENVLEEFEQKVAELHQQHRG 198 (1144)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCCcc-chhccccccccccc-hhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999997776443 33334445433220 00124789999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
.++.+|+..||+.|+.|++||.++|.++|..|.++.|||...||.++..+... ...|||.+|.+++|+.+.|.|....
T Consensus 199 ~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~--~~~~~W~di~~is~~ks~~~le~~~ 276 (1144)
T KOG0792|consen 199 LLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQ--SVKFPWGDIIKISFKKSTFGLEQRN 276 (1144)
T ss_pred cCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccc--cceechhhhhhhhcchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999865553 5899999999999999999999865
Q ss_pred CCCCc----eeeehhhhhhh
Q psy586 241 KSSPN----FIFFSLKVRMN 256 (472)
Q Consensus 241 ~~~~~----~vF~t~q~r~~ 256 (472)
+.... ..|.+...+..
T Consensus 277 ~~~~~r~t~~~F~~~~~~~a 296 (1144)
T KOG0792|consen 277 KDSESRETLLGFNMLDARTA 296 (1144)
T ss_pred ccccchhhhheeeecccchh
Confidence 54321 23555554444
No 4
>KOG3527|consensus
Probab=100.00 E-value=7.4e-35 Score=308.78 Aligned_cols=241 Identities=33% Similarity=0.536 Sum_probs=219.5
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHHH
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLF 81 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~Ll 81 (472)
++.|++||+.||+.|+|-|.+||||.|.+......|||+.+.+.+|. +..+|.|.|-+||||++++. |..++||+++
T Consensus 51 ~~kg~~~~~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~i~k~v--r~~~w~f~f~vKfyPp~Psq-l~EditrY~l 127 (975)
T KOG3527|consen 51 HAKGQVLFDKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKEIKKQV--RSFPWNFTFNVKFYPPDPSQ-LTEDITRYYL 127 (975)
T ss_pred ccccchhHHHHhhccchhhhhhceeEEecCCCCccccccchhhhccc--ccCccceeEeeeeCCCChHh-ccccchhhee
Confidence 46799999999999999999999999999999999999999999996 57899999999999999986 9999999999
Q ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q psy586 82 FLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGM 161 (472)
Q Consensus 82 ylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~ 161 (472)
.||+|+|||.|++||+.-+..+|++|.+|+++|||++..|...|+....+-|... ..+++.++..|+.|+||
T Consensus 128 cLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~ee~~~~y~~df~~aPnqt--------~eledkv~eLhkt~rg~ 199 (975)
T KOG3527|consen 128 CLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPEEHGSDYLSDFKFAPNQT--------KELEDKVMELHKTHRGM 199 (975)
T ss_pred hhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHHHcccchhhhhccCcchh--------hhHHHHHHHHHhhhcCC
Confidence 9999999999999999999999999999999999999999989998888889753 35889999999999999
Q ss_pred ChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC
Q psy586 162 SRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241 (472)
Q Consensus 162 s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~ 241 (472)
++++|.++||..|.+|.|||++.+..||+.|.++.|||++.|+.+|.+.-++ ..|.|..|-+++|.+..|+|+....
T Consensus 200 ~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lri---nrfawPKilKisykR~~FyiKirPg 276 (975)
T KOG3527|consen 200 TPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRI---NRFAWPKILKISYKRSNFYIKIRPG 276 (975)
T ss_pred ChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhh---ccccCchhhhhccceeeeEEEecCC
Confidence 9999999999999999999999999999999999999999999999877664 7899999999999999999998654
Q ss_pred CCC----ceeeehhhhhhh
Q psy586 242 SSP----NFIFFSLKVRMN 256 (472)
Q Consensus 242 ~~~----~~vF~t~q~r~~ 256 (472)
+.+ +.-|--+.-+..
T Consensus 277 e~eq~EstigFklpnhraa 295 (975)
T KOG3527|consen 277 EFEQFESTIGFKLPNHRAA 295 (975)
T ss_pred ccccccccccccccchhhH
Confidence 432 233655554443
No 5
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=100.00 E-value=4e-32 Score=256.86 Aligned_cols=184 Identities=35% Similarity=0.628 Sum_probs=165.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcc-cccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFI-AWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQH 79 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~-~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~ 79 (472)
++|||+|+++.||+++||.+..+|||++.++++.. .|+++.+++.++..+. .++.|.||++||+++......|+++.+
T Consensus 22 ~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~~l~fr~r~~~~~~~~~~~d~~~~~ 100 (207)
T smart00295 22 SSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKS-EPLTLYFRVKFYPPDPLQLKEDPTRLN 100 (207)
T ss_pred CCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCC-CCcEEEEEEEEccCCHHHhcchhHHHH
Confidence 58999999999999999999999999999876555 8999999999987432 578999999999998654234677788
Q ss_pred HHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCC-ccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhh
Q psy586 80 LFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY-KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADH 158 (472)
Q Consensus 80 LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~-~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~ 158 (472)
++|.|++++|++|++||+.++++.||||++|+.+||+++..+ .........|+|..+.++++++.+.|+++|.+.|+++
T Consensus 101 ~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (207)
T smart00295 101 LLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKEL 180 (207)
T ss_pred HHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998765 4455667899999999987778899999999999999
Q ss_pred cCCChHHHHHHHHHHHhcccCCCceEE
Q psy586 159 RGMSRDEAEMEYLKIAQDLDMYGVNYF 185 (472)
Q Consensus 159 ~g~s~~eA~~~yLkiaq~l~~yG~~~F 185 (472)
.|+|+.+|+..||++|++||+||+++|
T Consensus 181 ~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 181 IGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred CCCCHHHHHHHHHHHhccccccCcccC
Confidence 999999999999999999999999987
No 6
>KOG3529|consensus
Probab=99.98 E-value=6.9e-34 Score=302.39 Aligned_cols=244 Identities=36% Similarity=0.546 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHhccc-----CCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEe
Q psy586 164 DEAEMEYLKIAQDLD-----MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP 238 (472)
Q Consensus 164 ~eA~~~yLkiaq~l~-----~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~ 238 (472)
.-++..|..+|+.+. +||..| .|..|...||-.+..++..--+.. .| .++.|..+ |++..
T Consensus 33 ~t~~~l~dlv~~~~glre~~yfgl~~---~d~~~~~~wl~~d~~v~~~d~~k~--~~---------~~~~f~ak-fy~E~ 97 (596)
T KOG3529|consen 33 TTGKQLFDLVVKTIGLRESWYFGLQY---TDSKGEPTWLKLDKKVLDQDVPKD--SP---------LNFHFHAK-FYPED 97 (596)
T ss_pred hhHHHHHHHHhccCCCchhhhccccc---ccCCCCcchhhccchhhhhhcCCC--CC---------cceeeeee-cchHH
Confidence 334455555565544 455555 688899999998888443321111 11 34677776 44444
Q ss_pred cCC---CCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhH
Q psy586 239 VDK---SSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEM 315 (472)
Q Consensus 239 ~d~---~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~ 315 (472)
+.. ...+-..|.++++..++.+.++|+.++.++|||| +||+.+|||+++.|..+++.....||.+++++|+|+.++
T Consensus 98 v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~-~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~ 176 (596)
T KOG3529|consen 98 VAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLASY-AVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDM 176 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHHHHhccccchhhhhhccccCcccchhhhhhccccHHH
Confidence 321 1223334449999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCccccccCCCCHHHHHH
Q psy586 316 WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMRRRKPDTMEIQQM 383 (472)
Q Consensus 316 ~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~~~~~f~w~~i~~ 383 (472)
|++||.+||.+|+||++++|+++||+||++|+||||+||+|+ +.|+++|....+++++..|+|++|++
T Consensus 177 ~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirn 256 (596)
T KOG3529|consen 177 WEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRN 256 (596)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCCccccCC
Confidence 999999999999999999999999999999999999999993 56788888888999999999999999
Q ss_pred HhhhhhhhhhhhhHHh--------------hh-----------------------------HHHHHHHHHHHHhHHHHHH
Q psy586 384 KSQAKEEKSRRQIERN--------------KL-----------------------------AREKQLREAAEREKCAMEQ 420 (472)
Q Consensus 384 ~s~~rk~f~i~~~~~~--------------~~-----------------------------~~~~~~~~~~~~~~~~~~~ 420 (472)
|||..|+|.|+++|+. ++ |+++++++++||++.+.+.
T Consensus 257 isf~~kkf~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~~ti~vqq~~~~a~~~k~~~~~e~~~~~~~~ 336 (596)
T KOG3529|consen 257 ISFNDKKFHIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELYMRRRKPDTIEVQQMKAQAREEKARKQLERAKLEREK 336 (596)
T ss_pred CCCCcccccCCCCCcccCcccccccccccchhhhhhhhccchhhhhcccccccchhhccccccchHHHHHHhhhhhhHHH
Confidence 9999999999999882 11 9999999999999999888
Q ss_pred HHH
Q psy586 421 RLV 423 (472)
Q Consensus 421 ~~~ 423 (472)
..+
T Consensus 337 ~~r 339 (596)
T KOG3529|consen 337 KKR 339 (596)
T ss_pred hhh
Confidence 543
No 7
>KOG3530|consensus
Probab=99.98 E-value=8.4e-34 Score=291.82 Aligned_cols=204 Identities=21% Similarity=0.301 Sum_probs=171.1
Q ss_pred HHhcccCCCceEEee--eecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCCC--CCceee
Q psy586 173 IAQDLDMYGVNYFPI--SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS--SPNFIF 248 (472)
Q Consensus 173 iaq~l~~yG~~~F~v--k~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~--~~~~vF 248 (472)
++..|+.-..+||.+ .|......||..++.-..++.... || .+.|++|+|.-+|.... ...|.|
T Consensus 40 V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~I~kqvK~gp--------py----tL~~rVKfY~sdP~~Lree~tRYqf 107 (616)
T KOG3530|consen 40 VFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKSIKKQVKIGP--------PY----TLHLRVKFYPSDPNNLREENTRYQF 107 (616)
T ss_pred HHHhhceeeeeccceeeechhhcceecCcchhHHHHhccCC--------Ce----EEEEEEEeccCChhhhhchhhHHHH
Confidence 444555545555544 677888999998777554443222 22 38889998888886432 345777
Q ss_pred ehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhcc
Q psy586 249 FSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHR 328 (472)
Q Consensus 249 ~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~ 328 (472)
| +|+|.|+++|||+|+.++|+.|||| +||+|+||||+..|+++|++.+.|+|.| ++.+|.+|.+.||+++
T Consensus 108 f-lQlKqDll~GRL~Cp~~~AaeLaAl-~lQsELGDYn~~~Ht~~yVSefRf~p~Q--------te~LE~~I~e~hK~~r 177 (616)
T KOG3530|consen 108 F-LQLKQDLLSGRLYCPFETAAELAAL-ILQSELGDYNEEEHTGGYVSEFRFLPNQ--------TEELEERIFELHKELR 177 (616)
T ss_pred H-HHHHHHHhcCCCCCchhhHHHHHHH-HHHHHhcCCChhhccccceeeeEecccc--------cHHHHHHHHHHHHHhc
Confidence 7 9999999999999999999999999 9999999999999999999999999999 9999999999999999
Q ss_pred CCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhh
Q psy586 329 GMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 329 G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
|+||++||++||..|++||||||+.|+|+ +.||.|+... +++..|-|++|.|+-|++|+|.+...
T Consensus 178 GqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~---~kig~f~WpkI~KvdFk~kk~~L~v~ 254 (616)
T KOG3530|consen 178 GQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGK---KKIGLFFWPKITKVDFKGKKFTLVVS 254 (616)
T ss_pred CCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECC---ceeeEEecchheEeeccCcEEEEEEe
Confidence 99999999999999999999999999993 5677777543 45567999999999999999999998
Q ss_pred HHhhh
Q psy586 397 ERNKL 401 (472)
Q Consensus 397 ~~~~~ 401 (472)
|.+..
T Consensus 255 edd~~ 259 (616)
T KOG3530|consen 255 EDDDQ 259 (616)
T ss_pred ecccc
Confidence 77555
No 8
>KOG3531|consensus
Probab=99.96 E-value=1.4e-31 Score=282.20 Aligned_cols=352 Identities=24% Similarity=0.323 Sum_probs=300.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
+++.|+-|+++||++|+|.|.+||||.|.|.++...|||+.|.|..|.-. .....++|-++||++++.. +..+-|+++
T Consensus 58 ~ka~g~vll~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kpi~rqi~~-~~~~~~~~~vkf~~p~~~~-l~ee~tryl 135 (1036)
T KOG3531|consen 58 HKAIGQVLLDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKPILRQIRR-PKDVVLRFVVKFFPPDPIQ-LQEEYTRYL 135 (1036)
T ss_pred ccccchHHHHHHHHhhceeeccccceeeccccCceEEecccchHHHHhcC-ccchhhheeecccCCCccc-cchhHHHHh
Confidence 57889999999999999999999999999999999999999999999643 4456899999999999987 889999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
|-+|++.|...|++.|..-+|..|+++.+|...|||+. .....++...+|+|... ..++.|..-|..|.|
T Consensus 136 f~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~-~~d~~~l~~~~~~p~q~---------~~~~ki~~~h~~hig 205 (1036)
T KOG3531|consen 136 FALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDE-YLDREHLAHTRYLPNQD---------ELEKKIMEFHQKHIG 205 (1036)
T ss_pred hhhccccccccCCccCCCchhhhhhcccccccCCchhc-cccceeeeeeecCchHH---------HHHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999943 33455778889999862 367899999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
++|.++-++-|.+|.++++||+..+.++|-.|+..-|+|...||.|+....++ .+|.|..|+.++|+.++|.|+.
T Consensus 206 ~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tki---nTf~wAkirklsfkrk~fLikl-- 280 (1036)
T KOG3531|consen 206 QTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKI---NTFNWAKIRKLSFKRKRFLIKL-- 280 (1036)
T ss_pred cCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceec---cCCCHHHHHHHHHHHHhhhhee--
Confidence 99999999999999999999999999999999999999999999999887774 7999999999999998776664
Q ss_pred CCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCC-CCcccccccCChhhhhhhcCChhHHHHH
Q psy586 241 KSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYK-PGMLASEDLLPQRVIDQYQMTPEMWEDR 319 (472)
Q Consensus 241 ~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~-~~yl~~~~~lP~~~~~~~~~~~~~~~~~ 319 (472)
.+...|.|.|+.+.+.+.++| ..|+=.||+.+.... .-|+... ..|.++++ ...+
T Consensus 281 --------------hp~~~g~~qdt~ef~~~~rd~-ck~fwk~cve~h~ffr~~~~~~~-k~k~~~~S--------~gss 336 (1036)
T KOG3531|consen 281 --------------HPDSYGYYKDTLEFLMASRDE-CKNFWKICVEHHAFFRLVEEPKP-KPKTVFFS--------KGSS 336 (1036)
T ss_pred --------------ccccccchhhhHHHHHHhHHH-HHHHHhccccccchhhhhcccCC-CCCceeec--------ccch
Confidence 444568889999999999999 999999998765422 2233333 44444333 3568
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc----eeee----EEeccCccccccCCCCHHHHHHHhhhhhhh
Q psy586 320 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS----ILDL----CIGNHDLFMRRRKPDTMEIQQMKSQAKEEK 391 (472)
Q Consensus 320 I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~----~~gi----~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f 391 (472)
++..|+.|+|+++.++|.+.++++.+.+-||..+|+.+ .-++ ..+.-+..++..+.|.|..+++++++++-|
T Consensus 337 frysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~~~~~~sl~~~n~~~~~~~~~~~~ss~P~ 416 (1036)
T KOG3531|consen 337 FRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPEQHRNGSLYEANGTDSYNKHQNVHSSEPH 416 (1036)
T ss_pred hhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhhccccccccceeecccccCcccccccccCCce
Confidence 99999999999999999999999999999999998763 1122 122112346778899999999999999988
Q ss_pred hh
Q psy586 392 SR 393 (472)
Q Consensus 392 ~i 393 (472)
..
T Consensus 417 l~ 418 (1036)
T KOG3531|consen 417 IA 418 (1036)
T ss_pred ec
Confidence 76
No 9
>KOG3527|consensus
Probab=99.95 E-value=1.5e-28 Score=261.06 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=166.6
Q ss_pred HHHHHhcccCCCceEEee--eecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCCC-CCce
Q psy586 170 YLKIAQDLDMYGVNYFPI--SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS-SPNF 246 (472)
Q Consensus 170 yLkiaq~l~~yG~~~F~v--k~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~-~~~~ 246 (472)
|=++|..|.....+||.+ .+....+-||.+.+. -+ .+..+|||. +.|++|++...|.... ..+.
T Consensus 58 ~~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~--------i~-k~vr~~~w~----f~f~vKfyPp~Psql~Editr 124 (975)
T KOG3527|consen 58 FDKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKE--------IK-KQVRSFPWN----FTFNVKFYPPDPSQLTEDITR 124 (975)
T ss_pred HHHHhhccchhhhhhceeEEecCCCCccccccchh--------hh-cccccCccc----eeEeeeeCCCChHhccccchh
Confidence 344555555545555544 345566789987544 11 356889998 9999998888885432 2334
Q ss_pred eeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHh
Q psy586 247 IFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYAD 326 (472)
Q Consensus 247 vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~ 326 (472)
.+.++|+|.|++.|||||+.-+.++|+|| .+|+|+||||++.|..+|++.+.+-|++ ...++++|+.+|+.
T Consensus 125 Y~lcLq~R~Dil~GrlPcsfvt~allgsy-~vq~E~gdYd~ee~~~~y~~df~~aPnq--------t~eledkv~eLhkt 195 (975)
T KOG3527|consen 125 YYLCLQLRQDILSGRLPCSFVTHALLGSY-TVQSELGDYDPEEHGSDYLSDFKFAPNQ--------TKELEDKVMELHKT 195 (975)
T ss_pred heehhhhhhhhhcCccccchhhhhhhhhH-hHHhHhccCCHHHcccchhhhhccCcch--------hhhHHHHHHHHHhh
Confidence 45789999999999999999999999999 9999999999999999999999999998 78899999999999
Q ss_pred ccCCChhHHHHHHHHHhhhccccCcceeecc-------eeeeE-----EeccCccccccCCCCHHHHHHHhhhhhhhhhh
Q psy586 327 HRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS-------ILDLC-----IGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRR 394 (472)
Q Consensus 327 ~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~-------~~gi~-----i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~ 394 (472)
|+||+|++|+++||..|..|-||||+.|+++ .+|+| ||...+ +++.|.|++|.||||+|..|+||
T Consensus 196 ~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~l---rinrfawPKilKisykR~~FyiK 272 (975)
T KOG3527|consen 196 HRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRL---RINRFAWPKILKISYKRSNFYIK 272 (975)
T ss_pred hcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechh---hhccccCchhhhhccceeeeEEE
Confidence 9999999999999999999999999999985 33444 443333 45679999999999999999999
Q ss_pred hhHH
Q psy586 395 QIER 398 (472)
Q Consensus 395 ~~~~ 398 (472)
....
T Consensus 273 irPg 276 (975)
T KOG3527|consen 273 IRPG 276 (975)
T ss_pred ecCC
Confidence 8854
No 10
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.90 E-value=3.4e-23 Score=180.67 Aligned_cols=112 Identities=34% Similarity=0.702 Sum_probs=98.7
Q ss_pred hcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCC-CCCCccCcCccc-------ccCc--hHHHhhcC
Q psy586 72 LVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYD-DSTYKPGMLASE-------DLLP--QRVIDQYQ 141 (472)
Q Consensus 72 l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~-~~~~~~~~l~~~-------~~lP--~~v~~~~~ 141 (472)
+.|+++++++|.|++++|++|+++|+.++|++||||++|+++||++ +..+..+++... .|+| ..++. .
T Consensus 5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~--~ 82 (126)
T PF00373_consen 5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIK--K 82 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHC--C
T ss_pred cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHh--h
Confidence 7899999999999999999999999999999999999999999999 555555554432 3899 77776 6
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEE
Q psy586 142 MTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYF 185 (472)
Q Consensus 142 ~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F 185 (472)
.+.+.|+++|.+.|++++|||+.+|+..||++|++||+||+++|
T Consensus 83 ~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 83 MKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp STHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 67899999999999999999999999999999999999999998
No 11
>KOG0792|consensus
Probab=99.90 E-value=2.4e-24 Score=233.67 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=156.6
Q ss_pred cCCChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEe
Q psy586 159 RGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP 238 (472)
Q Consensus 159 ~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~ 238 (472)
.|...-++-.+.|.+.+. .+||.. ...++.+..-||...+.=-... + .+..--.+.|++++|+..|
T Consensus 44 ~gQ~~ld~V~qrL~~~e~-~yFgl~--~~~~k~~~~rWvdleK~lkkql---------~--k~a~~p~l~frV~fyV~~p 109 (1144)
T KOG0792|consen 44 TGQELLDAVAQRLELREK-EYFGLL--WSPDKPDQIRWVDLEKPLKKQL---------I--KVANPPLLHFRVKFYVPDP 109 (1144)
T ss_pred CchhHHHHHhhhhccccc-cccccc--ccCCccCccceeccchhHHHhh---------h--ccCCCceEEEEEEEEecCh
Confidence 455556665566655544 455511 1256677888988755411111 1 1112334788888888777
Q ss_pred cCCC--CCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCC--cccccccCChhhhhhhcCChh
Q psy586 239 VDKS--SPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPG--MLASEDLLPQRVIDQYQMTPE 314 (472)
Q Consensus 239 ~d~~--~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~--yl~~~~~lP~~~~~~~~~~~~ 314 (472)
.... ...|.|| +|+|.|+++|||+|+..+|++||+| ++||+||||+...+..+ |+......+.+.-. ..+
T Consensus 110 ~~LqeE~TRyqyy-lQvK~di~eGrl~Ct~~qailLA~y-avQae~gdy~~~~s~~~l~~~~~~p~~~~~~~n----~~~ 183 (1144)
T KOG0792|consen 110 SGLQEEATRYQYY-LQVKKDILEGRLPCTLNQAILLASY-AVQAEFGDYNQKQSQDGLEYLSVFPQCTLQDEN----VLE 183 (1144)
T ss_pred hHHHHHHHHHHHH-HHHHHHHhccccCCchHHHHHHHHh-hhhhhhcchhhhcCCccchhccccccccccchh----hHH
Confidence 5443 3345566 9999999999999999999999999 99999999997766554 55555555544110 134
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc-------eeeeEEecc---CccccccCCCCHHHHHHH
Q psy586 315 MWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS-------ILDLCIGNH---DLFMRRRKPDTMEIQQMK 384 (472)
Q Consensus 315 ~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~-------~~gi~i~~~---~~~~~~~~~f~w~~i~~~ 384 (472)
++++||.++|+.|.|++|+|||++||+.|++|++||+++|+++ .+||++.+. .........|+|-+|.++
T Consensus 184 e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~i 263 (1144)
T KOG0792|consen 184 EFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKI 263 (1144)
T ss_pred HHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhhhhhh
Confidence 8999999999999999999999999999999999999999995 223322211 101133458999999999
Q ss_pred hhhhhhhhhhhhHH
Q psy586 385 SQAKEEKSRRQIER 398 (472)
Q Consensus 385 s~~rk~f~i~~~~~ 398 (472)
||+++.|.|.+..+
T Consensus 264 s~~ks~~~le~~~~ 277 (1144)
T KOG0792|consen 264 SFKKSTFGLEQRNK 277 (1144)
T ss_pred hcchhhhhhhhhhc
Confidence 99999999998844
No 12
>KOG4261|consensus
Probab=99.84 E-value=1.2e-22 Score=213.40 Aligned_cols=231 Identities=23% Similarity=0.392 Sum_probs=202.7
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcC---------------------------------CCcccccccchhhhccC
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDN---------------------------------KGFIAWLKLDKKVQDQG 48 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~---------------------------------~~~~~wL~~~kkl~~q~ 48 (472)
+-+|.+|.-.||.++||.+.+.++|--.+. +.+..|||..+.+.+|+
T Consensus 104 sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~tgtl~~~~~~m~~~~kme~Lkkkl~td~el~wld~~rtlreqg 183 (1003)
T KOG4261|consen 104 SQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEGTGTLNLKRKLMRKERKMEKLRKKLHTDDELNWLDHSRTLREQG 183 (1003)
T ss_pred cccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCCCceEEeehhHHHhhhhhHHHHhhcccchhhhhHHHhHHHHhcC
Confidence 457999999999999998887777632210 24568999999999998
Q ss_pred ccCCCceeEEEEeeeeccCchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcc
Q psy586 49 ISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLAS 128 (472)
Q Consensus 49 ~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~ 128 (472)
+ +..+++.+|++||..+.+.+-.||+...|+|.|.+++|+.|..|++.+.|..+|+++.|+.||+++...|+ +|++.
T Consensus 184 i--de~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~~~~~k~k-~~ld~ 260 (1003)
T KOG4261|consen 184 I--DEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGPHNEDKHK-GFLDL 260 (1003)
T ss_pred c--cHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCCchhhccc-cchhc
Confidence 5 34567888999988888877889999999999999999999999999999999999999999999999998 99999
Q ss_pred cccCchHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeee-----cCCCceEEEecCCc
Q psy586 129 EDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISN-----KKDTDLWLGVTALG 203 (472)
Q Consensus 129 ~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~-----~~~~~~~LgV~~~G 203 (472)
..++|+...++ +. +.+|...|+.+.|||..+|+.+|.+.|..|+.||++||-||- .++.+.+|||++..
T Consensus 261 kd~lpk~y~k~-----k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~s 334 (1003)
T KOG4261|consen 261 KDFLPKEYVKQ-----KG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKES 334 (1003)
T ss_pred cccChHHHhcc-----cc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHHh
Confidence 99999998873 22 789999999999999999999999999999999999999963 34579999999999
Q ss_pred eEEEecCCccccceeeecccccceeecceeeEEEecCCC
Q psy586 204 LNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242 (472)
Q Consensus 204 I~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~ 242 (472)
+...+.+++. .+..||...|+.|.-+.+.|++.+.+..
T Consensus 335 vmr~de~tk~-il~ewpl~~V~rw~~s~~~ftldfgdyq 372 (1003)
T KOG4261|consen 335 VMRVDEKTKE-ILQEWPLTTVRRWAASPKSFTLDFGDYQ 372 (1003)
T ss_pred hhhcchhhhh-HhhhcchhHHHHhccCcceecccccccc
Confidence 9988888885 4788999999999999999999997653
No 13
>KOG3531|consensus
Probab=99.83 E-value=2e-21 Score=205.84 Aligned_cols=209 Identities=19% Similarity=0.296 Sum_probs=160.1
Q ss_pred HHHHHHHHhcccCCCceEEee--eecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCCCCC
Q psy586 167 EMEYLKIAQDLDMYGVNYFPI--SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244 (472)
Q Consensus 167 ~~~yLkiaq~l~~yG~~~F~v--k~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~~~ 244 (472)
+..+=++|..|....++||.. .|.++..+||..-+.-+..+.. .+ . .-+.|..++|.-.+++...+
T Consensus 63 ~vll~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kpi~rqi~~-~~-~----------~~~~~~vkf~~p~~~~l~ee 130 (1036)
T KOG3531|consen 63 QVLLDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKPILRQIRR-PK-D----------VVLRFVVKFFPPDPIQLQEE 130 (1036)
T ss_pred hHHHHHHHHhhceeeccccceeeccccCceEEecccchHHHHhcC-cc-c----------hhhheeecccCCCccccchh
Confidence 344556677766666666655 6777889999886665544432 11 0 11344445555555444332
Q ss_pred -ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHH
Q psy586 245 -NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIW 323 (472)
Q Consensus 245 -~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~ 323 (472)
+-..++.+.+.|...|++.|++.+|.+|+++ ++|++.||| .+.....||+...|+|++ ..++++|+..
T Consensus 131 ~trylf~~q~k~dl~~G~l~c~d~ta~lLss~-~~qse~gdf-~~~~d~~~l~~~~~~p~q---------~~~~~ki~~~ 199 (1036)
T KOG3531|consen 131 YTRYLFALQIKRDLALGRLTCNDTTAALLSSH-IVQSEIGDF-DEYLDREHLAHTRYLPNQ---------DELEKKIMEF 199 (1036)
T ss_pred HHHHhhhhccccccccCCccCCCchhhhhhcc-cccccCCch-hccccceeeeeeecCchH---------HHHHHHHHHh
Confidence 2235669999999999999999999999999 999999999 455567899999999997 4589999999
Q ss_pred HHhccCCChhHHHHHHHHHhhhccccCcceeeccee--------eeEEeccCcc-ccccCCCCHHHHHHHhhhhhhhhhh
Q psy586 324 YADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISIL--------DLCIGNHDLF-MRRRKPDTMEIQQMKSQAKEEKSRR 394 (472)
Q Consensus 324 h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~--------gi~i~~~~~~-~~~~~~f~w~~i~~~s~~rk~f~i~ 394 (472)
|+.|.|++|++++++.|.+|++|+|||+.+|+++.. |+++|...++ .++.++|+|+.|+++||+||+|.|+
T Consensus 200 h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLik 279 (1036)
T KOG3531|consen 200 HQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIK 279 (1036)
T ss_pred hhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhhe
Confidence 999999999999999999999999999999998521 3344433332 5788999999999999999999999
Q ss_pred hhHH
Q psy586 395 QIER 398 (472)
Q Consensus 395 ~~~~ 398 (472)
.++-
T Consensus 280 lhp~ 283 (1036)
T KOG3531|consen 280 LHPD 283 (1036)
T ss_pred eccc
Confidence 9843
No 14
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.69 E-value=3.1e-17 Score=143.00 Aligned_cols=106 Identities=32% Similarity=0.558 Sum_probs=90.5
Q ss_pred eeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCC-CCCCCCCccccc-------ccCC--hhhhhhhcCChhH
Q psy586 246 FIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYD-DSTYKPGMLASE-------DLLP--QRVIDQYQMTPEM 315 (472)
Q Consensus 246 ~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~-~~~~~~~yl~~~-------~~lP--~~~~~~~~~~~~~ 315 (472)
..++..|++.++++|+++|+.+.++.|||+ ++|+++|||+ +..+..+++... .|+| ..++. .+..+.
T Consensus 11 ~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl-~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~--~~~~~~ 87 (126)
T PF00373_consen 11 RHLLYLQARRDVLQGRLPCSEEDAIKLAAL-QLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIK--KMKQKE 87 (126)
T ss_dssp HHHHHHHHHHHHHTTSSTS-HHHHHHHHHH-HHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHC--CSTHHH
T ss_pred HHHHHHHHHHHHHcCcCCCCHHHHHHHHHH-HHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHh--hhhHHH
Confidence 335568999999999999999999999999 9999999999 555666675443 3899 77665 456899
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCccee
Q psy586 316 WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYF 354 (472)
Q Consensus 316 ~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~ 354 (472)
|..+|...|+++.|+|+.+|+..||++|++|++||+++|
T Consensus 88 ~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 88 WEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 999999999999999999999999999999999999987
No 15
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.61 E-value=1.4e-15 Score=143.54 Aligned_cols=128 Identities=27% Similarity=0.454 Sum_probs=110.4
Q ss_pred ceeecceeeEEEecCC--CCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCC-CCCcccccccCC
Q psy586 226 HISFDDKKFIIKPVDK--SSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTY-KPGMLASEDLLP 302 (472)
Q Consensus 226 ~~sf~~kkF~I~~~d~--~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~-~~~yl~~~~~lP 302 (472)
.+.|+.+.|.....+. +...+.++..|++.+++.|+++|+.+.+..|||+ .+|+++|||+++.+ ...+.....++|
T Consensus 77 ~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal-~~q~~~gd~~~~~~~~~~~~~~~~~lP 155 (207)
T smart00295 77 TLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAAL-ALQAEFGDYDEELHVLLKELSLKRFLP 155 (207)
T ss_pred EEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH-HHHHHhcCCChHhcCCccccccceeCC
Confidence 4777776555443221 2222436678999999999999999999999999 99999999998886 567788899999
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCccee
Q psy586 303 QRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYF 354 (472)
Q Consensus 303 ~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~ 354 (472)
+.+++.++++.+.|.++|.+.|+++.|||+.+|...||++|+.|++||+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 156 KQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred hhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 9999988888999999999999999999999999999999999999999986
No 16
>KOG0248|consensus
Probab=99.60 E-value=3.8e-16 Score=162.99 Aligned_cols=207 Identities=19% Similarity=0.321 Sum_probs=169.1
Q ss_pred eeEEEEeeeeccCchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCc-CcccccCc
Q psy586 55 TPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGM-LASEDLLP 133 (472)
Q Consensus 55 ~~l~fr~kfy~~~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~-l~~~~~lP 133 (472)
..++.+.++|.-.... -.++..+.|+|.|.-+.|..|++|.+.+.+..+|||..|..+||-+.......+ .-.++|.|
T Consensus 674 ~~l~~~~r~y~~~~~~-~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~q~l~qv~~rFyP 752 (936)
T KOG0248|consen 674 AALSLRMRHYWGHLAL-TETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSDQQFEFISQRFYP 752 (936)
T ss_pred HHHHHHHHHHHHHhhc-CCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhCh
Confidence 3456666666555443 457888999999999999999999999999999999999999998744332211 12369999
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeee-----cCCCceEEEecCCceEEEe
Q psy586 134 QRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISN-----KKDTDLWLGVTALGLNIYE 208 (472)
Q Consensus 134 ~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~-----~~~~~~~LgV~~~GI~i~~ 208 (472)
.++.+ +.+.++++.+|...|..++|||+.|+..-||.+|++||+||...|.++. ...+=+||+|+.+||.+++
T Consensus 753 ~ryrd--ga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd 830 (936)
T KOG0248|consen 753 SKMLD--VACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLD 830 (936)
T ss_pred hhhhc--cCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceecc
Confidence 99987 7889999999999999999999999999999999999999999999853 3346799999999999999
Q ss_pred cCCccccceeeecccccceeecceeeEEEec---CCCC-----CceeeehhhhhhhhhcCcccCCCcchhhhhhh
Q psy586 209 KENKLTPKTTFPWSEIRHISFDDKKFIIKPV---DKSS-----PNFIFFSLKVRMNKLYGDYDDSTYKPGMLASE 275 (472)
Q Consensus 209 ~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~---d~~~-----~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~ 275 (472)
.|.- ..+++|||+.+..+.-....|.+..+ +++. ++++|-....|+..+ ..+||||
T Consensus 831 ~N~M-~vi~tYpYsSl~TFGG~qDDFMlVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~----------Tl~~ASY 894 (936)
T KOG0248|consen 831 RNHM-DVIRTYPYSSLSTFGGFQDDFMLVIIRTPGKHPDEAPKEKLTFSMAKPKIEEL----------TLHLASY 894 (936)
T ss_pred ccce-eEEEEeeccccccccCcccceEEEEecCCCCCCCccchhhhhhhhccchHHHH----------HHHHHHH
Confidence 8876 46899999999999887777887774 3332 357777777666555 6788888
No 17
>KOG4371|consensus
Probab=99.60 E-value=8.3e-16 Score=166.42 Aligned_cols=243 Identities=19% Similarity=0.340 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhcc---Ccc------CCCceeEEEEeeeeccCchhhhcchh
Q psy586 6 RDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQ---GIS------NQCTTPFMFLAKFYAEDVAEELVQEV 76 (472)
Q Consensus 6 ~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q---~~~------~~~~~~l~fr~kfy~~~~~~~l~~~~ 76 (472)
+|++...|..+.+.+.-+|||.+..++.. .+.....++.+- +|+ ..+|+.++|+++||+..... ..+++
T Consensus 531 ~dv~~~pi~~~~iss~~~fGlS~~~dneh-~~~e~~drLls~sasewk~~As~~~~PP~~~h~rv~~y~s~l~~-is~~~ 608 (1332)
T KOG4371|consen 531 RDVFSLPIQNMNISSHVFFGLSFLRDNEH-YFIEDHDRLLSFSASEWKSVASVGVKPPYVLHLRVKFYPSILDF-ISTDV 608 (1332)
T ss_pred ccccCCcccceecccceEeeceeecCCcc-hhhcchHHHHhcCchhhHHHhhcccCCCeEEEEEEEeccccCcc-hhhhh
Confidence 45566678889999999999999865533 233333333221 122 35899999999999998775 44455
Q ss_pred H---HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHH
Q psy586 77 T---QHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKI 153 (472)
Q Consensus 77 t---~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~ 153 (472)
+ +.-+|+|++.++|...+.-..+.+.+||+++.|++.|+.+++.+..+|..+..|+|..+....+ ...+.+++..
T Consensus 609 akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~~gdysdP~hY~ps~yss~e~--q~li~~~~p~ 686 (1332)
T KOG4371|consen 609 AKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQADSGNRPPNPVIGDYSDPQHYLPSKYSSFED--QSLIKNILPE 686 (1332)
T ss_pred hhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhhhcCCCCCCccccccCChhhhcccceecccc--hhhhhhcccc
Confidence 5 9999999999999999998899999999999999999999999999999999999999876332 3345667778
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeee-----------cCCCceEEEecCCceEEEecCCc-cccceeeec
Q psy586 154 WYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISN-----------KKDTDLWLGVTALGLNIYEKENK-LTPKTTFPW 221 (472)
Q Consensus 154 ~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~-----------~~~~~~~LgV~~~GI~i~~~~~k-~~p~~~f~w 221 (472)
.|...-|.+..+|...|+++++..|.|+++++++-. ..+.+.|+|+..+||.++.+... ...+..|||
T Consensus 687 ~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPp 766 (1332)
T KOG4371|consen 687 LHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPP 766 (1332)
T ss_pred ccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCC
Confidence 888889999999999999999999999999999821 22468999999999999975432 245789999
Q ss_pred ccccceeecceeeEEEecCCCCC-ceeeehhh
Q psy586 222 SEIRHISFDDKKFIIKPVDKSSP-NFIFFSLK 252 (472)
Q Consensus 222 s~I~~~sf~~kkF~I~~~d~~~~-~~vF~t~q 252 (472)
..|....|..+.|.|........ ..+||+..
T Consensus 767 a~v~~lqFd~k~f~Is~~g~p~~~i~~~yt~h 798 (1332)
T KOG4371|consen 767 AQVQTLQFDKKRFVISAVGAPDEQIETFYTDH 798 (1332)
T ss_pred CCCCceeecCCCceeecCCCCCcceEEeeccC
Confidence 99999999999999998765533 34566554
No 18
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=99.53 E-value=2.1e-14 Score=115.55 Aligned_cols=65 Identities=45% Similarity=0.758 Sum_probs=58.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEE-EcCCCcccccccchhhhccCccCCCceeEEEEeeeec
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQY-EDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYA 65 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~-~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~ 65 (472)
++|||+||++.||.+|||.|.+||||++ .++++..+||++++++.+|......++.|+||+||||
T Consensus 15 ~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 15 PKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp TTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEESS--
T ss_pred CCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEEECC
Confidence 6899999999999999999999999999 7788999999999999999866678999999999997
No 19
>KOG3552|consensus
Probab=99.48 E-value=9e-14 Score=149.28 Aligned_cols=204 Identities=16% Similarity=0.240 Sum_probs=155.2
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEc----CCCcccccccchhhhccCc-cCCCceeEEEEeeeeccCchhhhc-ch
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYED----NKGFIAWLKLDKKVQDQGI-SNQCTTPFMFLAKFYAEDVAEELV-QE 75 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~----~~~~~~wL~~~kkl~~q~~-~~~~~~~l~fr~kfy~~~~~~~l~-~~ 75 (472)
+||++|++-.+-++|.|+-.++|+|.... ...-.+.|+....+....- +....++..||+.|-|.++...+. |+
T Consensus 203 tTtVkDVIltl~eKLsi~~iE~FsL~LE~~~s~~rnkL~LLheqEsl~qV~~Rp~sHk~RCLFRItFVPkdp~dLlqrDp 282 (1298)
T KOG3552|consen 203 TTTVKDVILTLLEKLSICCIELFSLVLEHVKSLKRNKLTLLHEQESLAQVAARPGSHKLRCLFRITFVPKDPADLLQRDP 282 (1298)
T ss_pred cccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccceeEeecHHHHHHHHHhCCcccceeEEEEEEeccCCHHHHHhcCc
Confidence 69999999999999999999999997542 2234455666666654322 234568999999999999986332 68
Q ss_pred hHHHHHHHHHHHHHhcccccc--CHHHHHHHHHHHHHHH-hCCCCCCCCccCcC----cccccCchHHHhhcCCCHHHHH
Q psy586 76 VTQHLFFLQVKQAILSMDIYC--PPEASVLLASYAVQAK-YGDYDDSTYKPGML----ASEDLLPQRVIDQYQMTPEMWE 148 (472)
Q Consensus 76 ~t~~LlylQvk~~iL~g~~~c--~~e~av~LAAl~~Qa~-~Gd~~~~~~~~~~l----~~~~~lP~~v~~~~~~~~~~~e 148 (472)
++..++|+|..+||+..++-. -++-|+.||||.|+.. +.+--..+...+|+ ..++|+|..++. +|..+++.
T Consensus 283 vAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~sll~--~MK~K~ik 360 (1298)
T KOG3552|consen 283 VAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPVSLLE--GMKRKEIK 360 (1298)
T ss_pred hHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccHHHHh--hhhHHHHH
Confidence 999999999999999999974 4699999999999854 33322234444554 446999999998 78888888
Q ss_pred HHHHHHHHhh-------cCCChHHHHHHHHHHHhcccCCCceEEeeeecCC---CceEEEecCC-ceEEE
Q psy586 149 DRIKIWYADH-------RGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD---TDLWLGVTAL-GLNIY 207 (472)
Q Consensus 149 ~~I~~~h~~~-------~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~---~~~~LgV~~~-GI~i~ 207 (472)
+.|....+.. +-++..+|++.||++..+|+.||-..|...-..| ..+.|=|+++ ||..+
T Consensus 361 kaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LLVgpryGiSqV 430 (1298)
T KOG3552|consen 361 KAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLLVGPRYGISQV 430 (1298)
T ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEEeccccchhHh
Confidence 8777666554 2356789999999999999999999999853333 4555556555 77665
No 20
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=99.46 E-value=1.5e-13 Score=113.86 Aligned_cols=77 Identities=45% Similarity=0.772 Sum_probs=67.7
Q ss_pred CCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC--CCCceeeehhhhhhh
Q psy586 179 MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK--SSPNFIFFSLKVRMN 256 (472)
Q Consensus 179 ~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~--~~~~~vF~t~q~r~~ 256 (472)
|||+++|+|+|++|++++|||++.||.+|+.++ +...|||++|.+++|++|+|.|++.+. ....+.|+++..+.+
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~---~~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~s~~~~ 77 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGT---PINEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTPSHRAC 77 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCC---EEEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECCCHHHH
Confidence 799999999999999999999999999998765 568999999999999999999999876 345677888876655
Q ss_pred hh
Q psy586 257 KL 258 (472)
Q Consensus 257 ~l 258 (472)
+.
T Consensus 78 k~ 79 (92)
T cd00836 78 KY 79 (92)
T ss_pred HH
Confidence 43
No 21
>KOG4371|consensus
Probab=99.46 E-value=1.5e-14 Score=156.90 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=127.4
Q ss_pred eehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhc
Q psy586 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADH 327 (472)
Q Consensus 248 F~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~ 327 (472)
.+..+.+..+++....-..+.+..+|+| ++|+++|..+++.+..+|+...+|+|+.+..... +..+.+++.++|...
T Consensus 615 e~Y~~~q~qvLeeq~V~~~da~f~laaF-alqadsGNr~~n~~~gdysdP~hY~ps~yss~e~--q~li~~~~p~~Hg~~ 691 (1332)
T KOG4371|consen 615 ELYLQCQRQVLEEQIVPKRDAAFELAAF-ALQADSGNRPPNPVIGDYSDPQHYLPSKYSSFED--QSLIKNILPELHGHY 691 (1332)
T ss_pred HHHHhhhHHHHhhcccccchhhhhHHhh-hhhhhcCCCCCCccccccCChhhhcccceecccc--hhhhhhccccccCch
Confidence 3347888999999988889999999999 9999999999999999999999999999887552 566777778999999
Q ss_pred cCCChhHHHHHHHHHhhhccccCcceeec-----------------------ceeeeEEe-ccCccccccCCCCHHHHHH
Q psy586 328 RGMSRDEAEMEYLKIAQDLDMYGVNYFPI-----------------------SILDLCIG-NHDLFMRRRKPDTMEIQQM 383 (472)
Q Consensus 328 ~G~s~~eAe~~yL~~a~~L~~YGv~~~~v-----------------------~~~gi~i~-~~~~~~~~~~~f~w~~i~~ 383 (472)
.|.+..+|...|++++++.+.|+++++++ ...||.|+ +.+...-....|+|..|+.
T Consensus 692 ~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~ 771 (1332)
T KOG4371|consen 692 AGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQT 771 (1332)
T ss_pred hhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCCc
Confidence 99999999999999999999999999987 14577777 5555555667899999999
Q ss_pred Hhhhhhhhhhhhh
Q psy586 384 KSQAKEEKSRRQI 396 (472)
Q Consensus 384 ~s~~rk~f~i~~~ 396 (472)
+-|.+|+|.|-..
T Consensus 772 lqFd~k~f~Is~~ 784 (1332)
T KOG4371|consen 772 LQFDKKRFVISAV 784 (1332)
T ss_pred eeecCCCceeecC
Confidence 9999999999776
No 22
>KOG3727|consensus
Probab=99.33 E-value=1.4e-12 Score=134.33 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=100.7
Q ss_pred cccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCC-CceEEEecCCceE
Q psy586 127 ASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD-TDLWLGVTALGLN 205 (472)
Q Consensus 127 ~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~-~~~~LgV~~~GI~ 205 (472)
+++.|+.+++.++++ .+++..||.++|...+.||..||++.||+-+|+||.||++||-|+-+.+ .+-+|||..+-+.
T Consensus 501 np~~~vSPr~~rk~k--sKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLi 578 (664)
T KOG3727|consen 501 NPECYVSPRYVRKLK--SKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLI 578 (664)
T ss_pred CchhhcCHHHHHHHh--hHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhhee
Confidence 356788888887554 6779999999999999999999999999999999999999999964433 5679999999999
Q ss_pred EEecCCccccceeeecccccceeecceeeEEEe--cCCCCCc-eeeehhhhhhhhh
Q psy586 206 IYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP--VDKSSPN-FIFFSLKVRMNKL 258 (472)
Q Consensus 206 i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~--~d~~~~~-~vF~t~q~r~~~l 258 (472)
.++..+.. ++.+|.|+.++.|..+ +.|+. +..+.+. ..|-+..+.+.++
T Consensus 579 rmDlatGd-~iKTWRfsnMKqWNVN---Weir~v~IeF~dev~iaFsc~SADCKVV 630 (664)
T KOG3727|consen 579 RMDLATGD-HIKTWRFSNMKQWNVN---WEIRQVMIEFEDEVNIAFSCLSADCKVV 630 (664)
T ss_pred eeecccCC-ceeeeeecchhhhccc---ceeeEEEEEecccceEEEEeecccchhh
Confidence 99998884 7999999999988877 44443 2223344 4466555556555
No 23
>KOG4261|consensus
Probab=99.06 E-value=4.9e-11 Score=126.74 Aligned_cols=105 Identities=26% Similarity=0.393 Sum_probs=98.9
Q ss_pred ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHH
Q psy586 245 NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWY 324 (472)
Q Consensus 245 ~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h 324 (472)
...|++.|.+.+++.|.+|.+.++|+.+|++ ..|..||+++...|+ +|+...+++|+..++ +.. +.||...|
T Consensus 210 qlnllyvQ~rD~il~g~hpv~~~kA~e~a~~-qshiq~g~~~~~k~k-~~ld~kd~lpk~y~k-----~k~-ekKif~~~ 281 (1003)
T KOG4261|consen 210 QLNLLYVQARDDILNGSHPVSFEKACEFAGF-QSHIQFGPHNEDKHK-GFLDLKDFLPKEYVK-----QKG-EKKIFQAH 281 (1003)
T ss_pred HhhhhhhhhhcccccCcCchhHHHHHHHhcc-ccccccCCchhhccc-cchhccccChHHHhc-----ccc-chhhhhhh
Confidence 3457789999999999999999999999999 999999999999999 999999999999876 444 99999999
Q ss_pred HhccCCChhHHHHHHHHHhhhccccCcceeecc
Q psy586 325 ADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS 357 (472)
Q Consensus 325 ~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~ 357 (472)
+.+.||+..+|...|.+.|+.|.+|||.||.|+
T Consensus 282 k~~~~~sei~ak~~y~k~~r~l~tygvtff~VK 314 (1003)
T KOG4261|consen 282 KNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVK 314 (1003)
T ss_pred hhhcchhHHHHHHHHHHHhccccccceEEEEeh
Confidence 999999999999999999999999999999994
No 24
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=98.94 E-value=1.7e-09 Score=89.02 Aligned_cols=69 Identities=36% Similarity=0.751 Sum_probs=58.0
Q ss_pred ecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC-CCCCceeeehhhhhhhhh
Q psy586 189 NKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD-KSSPNFIFFSLKVRMNKL 258 (472)
Q Consensus 189 ~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d-~~~~~~vF~t~q~r~~~l 258 (472)
|+.|.++||||++.||.+|+.+++.. ...|+|++|.+++|++++|.|.+.+ .....+.|+++..+..+.
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~~~-~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~ 70 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNRIS-TQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKY 70 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBSSS-SEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHH
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCccc-ceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHH
Confidence 57889999999999999999888865 7999999999999999999999986 445567788877665544
No 25
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.33 E-value=2.5e-08 Score=82.45 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=38.7
Q ss_pred ccCcceeecc------------eeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 348 MYGVNYFPIS------------ILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 348 ~YGv~~~~v~------------~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
||||++|+|+ +.||.|+..+. +...|+|++|+|+||++|+|.|++.+.
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~---~~~~f~W~~I~~isf~~k~F~i~~~~~ 60 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGT---PINEFPWPEIRKISFKRKKFTLKVRDK 60 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCC---EEEEEEcccceEEEEcCCEEEEEEecC
Confidence 7999999994 33445554332 677899999999999999999999965
No 26
>KOG4257|consensus
Probab=98.32 E-value=2e-06 Score=91.36 Aligned_cols=222 Identities=14% Similarity=0.230 Sum_probs=159.9
Q ss_pred cHHHHHHHHHHHhCCCc--cCceeEEEEcC-------CCcccccccchhhhc------cCcc--CCCceeEEEEeeeecc
Q psy586 4 TGRDLFDLVCRTVGLRE--TWYFGLQYEDN-------KGFIAWLKLDKKVQD------QGIS--NQCTTPFMFLAKFYAE 66 (472)
Q Consensus 4 tg~eL~~~V~~~lgL~e--~~~FGL~~~~~-------~~~~~wL~~~kkl~~------q~~~--~~~~~~l~fr~kfy~~ 66 (472)
|..-++..+++-+|+.. ...|+....+. -+...|+.+--++.. ...+ ....|++-+|++|-|+
T Consensus 24 t~~rvi~v~~~~~g~~~~~~~~~acr~~t~i~~~~~~~~~S~~~~~~l~~i~lp~cy~~~lp~~~s~ewr~elr~Ry~P~ 103 (974)
T KOG4257|consen 24 TIERVIHVVARGIGISQVAVAHFACRLVTGISPQTAGSGDSLWLHPMLRIIQLPHCYARHLPIGVSDEWRLELRMRYMPQ 103 (974)
T ss_pred heeeeeeeeeeccCCCchhhhheeeeeccccchhhhhhccccccchhhhhccccccccccCCCCcchhheeeeeeeeCcH
Confidence 33344555566677652 24566665532 233455554333221 1112 2467999999999999
Q ss_pred Cchhhhc-chhHHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhCCCCCCCC----ccCcC----cccccCchHH
Q psy586 67 DVAEELV-QEVTQHLFFLQVKQAILSMDIY-CPPEASVLLASYAVQAKYGDYDDSTY----KPGML----ASEDLLPQRV 136 (472)
Q Consensus 67 ~~~~~l~-~~~t~~LlylQvk~~iL~g~~~-c~~e~av~LAAl~~Qa~~Gd~~~~~~----~~~~l----~~~~~lP~~v 136 (472)
++.+.+. |..|.-+||.|+++|+.+.... ++.|.|++||+|-+.-.|-+.+-... .-.++ ....|+|+.+
T Consensus 104 ~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~lekevglksffPksl 183 (974)
T KOG4257|consen 104 SVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDLEKEVGLKSFFPKSL 183 (974)
T ss_pred HHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHHHHHhhHHhhChHhh
Confidence 9987333 4588899999999999987654 67899999999999998887643321 11222 2358999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCC--CceEEEecCC-ceEEEecCCcc
Q psy586 137 IDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD--TDLWLGVTAL-GLNIYEKENKL 213 (472)
Q Consensus 137 ~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~--~~~~LgV~~~-GI~i~~~~~k~ 213 (472)
.+ ...++.+.+.|..-+++..+.+++|..+.|+.+....-.|.++.|.+.-..| ..+-|.|++. ||.-..... -
T Consensus 184 ~~--~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~Gisy~t~~~-~ 260 (974)
T KOG4257|consen 184 HN--PFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHTGISYLTNER-C 260 (974)
T ss_pred hc--ccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcccceeccCCC-C
Confidence 98 4668999999999999999999999999999999988888899998864444 5788888888 998764332 2
Q ss_pred ccceeeeccccccee
Q psy586 214 TPKTTFPWSEIRHIS 228 (472)
Q Consensus 214 ~p~~~f~ws~I~~~s 228 (472)
.|...-.+..|++|.
T Consensus 261 ~~t~laefkqi~sI~ 275 (974)
T KOG4257|consen 261 DPTRLAEFKQIASIT 275 (974)
T ss_pred ChHHHHhhhhhheeE
Confidence 456666777887777
No 27
>KOG3784|consensus
Probab=98.05 E-value=8.8e-05 Score=75.05 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=116.0
Q ss_pred cccHHHHHHHHHHHhCCCcc--CceeEEEEcCCCcccccccchhhhccCcc-------CCCceeEEEEeeeeccCchhhh
Q psy586 2 RATGRDLFDLVCRTVGLRET--WYFGLQYEDNKGFIAWLKLDKKVQDQGIS-------NQCTTPFMFLAKFYAEDVAEEL 72 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~--~~FGL~~~~~~~~~~wL~~~kkl~~q~~~-------~~~~~~l~fr~kfy~~~~~~~l 72 (472)
+-|..+++..||.++|+++. .||||+.+..+... =|..-+++++-..+ ......+.+|.-+|-.+....+
T Consensus 127 s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~~~~-~ls~vRkl~~fE~p~vs~t~~~~~~~~l~LRk~~~ds~~e~~L 205 (407)
T KOG3784|consen 127 SDTASLVLKSVCRKLGLPDELIGYFGLFLVRDNDPG-NLSFVRKLADFESPYVSLTSNYVSACELLLRKWYWDSSRERAL 205 (407)
T ss_pred cccHHHHHHHHHhhcCCchHhhhheeeeEEeccCCC-cceeeeeecccccccccccccccccccceeeeeeecchhhhHH
Confidence 45788999999999999854 79999977433111 12333444332111 1223347777777766665445
Q ss_pred cc-hhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHH
Q psy586 73 VQ-EVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI 151 (472)
Q Consensus 73 ~~-~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I 151 (472)
.+ .+...|+|.|+..||-.|......+..-+|=|++.
T Consensus 206 ~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~------------------------------------------ 243 (407)
T KOG3784|consen 206 MDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQE------------------------------------------ 243 (407)
T ss_pred hcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHH------------------------------------------
Confidence 44 68888999999999998887644332223332221
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEee----eecCCCceEEEecCCceEEE-ecCCccccceeeecccccc
Q psy586 152 KIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI----SNKKDTDLWLGVTALGLNIY-EKENKLTPKTTFPWSEIRH 226 (472)
Q Consensus 152 ~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~v----k~~~~~~~~LgV~~~GI~i~-~~~~k~~p~~~f~ws~I~~ 226 (472)
.+-+.+||+.|+.++.||.-.|+- -.++|+++.+-++..-+..- ..+.+.+-.+.|.|++|+.
T Consensus 244 ------------q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trmr~ 311 (407)
T KOG3784|consen 244 ------------EESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRMRC 311 (407)
T ss_pred ------------hhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeeeEe
Confidence 344678999999999999999974 34678877777766655554 3333323468999999999
Q ss_pred eeec
Q psy586 227 ISFD 230 (472)
Q Consensus 227 ~sf~ 230 (472)
|...
T Consensus 312 Wrvt 315 (407)
T KOG3784|consen 312 WRVT 315 (407)
T ss_pred eecc
Confidence 9876
No 28
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=97.61 E-value=0.00046 Score=56.15 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
-|..+...|-+-....+.++-+.|=||--||..||++.. .|++++. .. ..--..|++++|
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~--~P~~~d~--------~~----------~~K~~AW~~l~~ 63 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTE--RPGMFDL--------KG----------RAKWDAWNSLKG 63 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCC--CCCcccH--------hh----------HHHHHHHHHcCC
Confidence 356666667666677889999999999999999999743 3454421 11 222346899999
Q ss_pred CChHHHHHHHHHHHhcc-cCCC
Q psy586 161 MSRDEAEMEYLKIAQDL-DMYG 181 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l-~~yG 181 (472)
||+++||..|++++..+ |.||
T Consensus 64 ms~~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 64 MSKEDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred CCHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999886 7776
No 29
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.35 E-value=0.001 Score=54.30 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=52.1
Q ss_pred HHHHHHHHhccc--cccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhc
Q psy586 82 FLQVKQAILSMD--IYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHR 159 (472)
Q Consensus 82 ylQvk~~iL~g~--~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~ 159 (472)
|..+..-|-+.. ..++.++-+.|=||--||..||++ ...|+++ .+.. ..=-+.|++++
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~--~~~P~~~--------d~~~----------~~K~~AW~~l~ 64 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCD--TPRPGFF--------DIEG----------RAKWDAWKALK 64 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS----S-CTTTT--------CHHH----------HHHHHHHHTTT
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCc--CCCCcch--------hHHH----------HHHHHHHHHcc
Confidence 444444444433 488999999999999999999998 3334544 1111 12234689999
Q ss_pred CCChHHHHHHHHHHHhcc
Q psy586 160 GMSRDEAEMEYLKIAQDL 177 (472)
Q Consensus 160 g~s~~eA~~~yLkiaq~l 177 (472)
|||+++||..|++++.++
T Consensus 65 gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 65 GMSKEEAMREYIELVEEL 82 (87)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 30
>PTZ00458 acyl CoA binding protein; Provisional
Probab=96.34 E-value=0.032 Score=45.81 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=56.6
Q ss_pred HHHHHHHHhccc--cccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhc
Q psy586 82 FLQVKQAILSMD--IYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHR 159 (472)
Q Consensus 82 ylQvk~~iL~g~--~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~ 159 (472)
|.++...|-+-. .++|.++-+.|=||--||..||++.. .|+.++ +.. ...|. .|.+++
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~--~P~~~d--------~~~-----raKw~-----AW~~l~ 64 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIK--EPSMFK--------YQD-----RKKYE-----AWKSIE 64 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCC--CCCccc--------HHH-----HHHHH-----HHHHcC
Confidence 556665554322 26788999999999999999999753 344441 111 11233 678999
Q ss_pred CCChHHHHHHHHHHHhcc-cCC
Q psy586 160 GMSRDEAEMEYLKIAQDL-DMY 180 (472)
Q Consensus 160 g~s~~eA~~~yLkiaq~l-~~y 180 (472)
|||+++||..|++++..+ |.|
T Consensus 65 ~ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 65 NLNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred CCCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999886 544
No 31
>KOG4335|consensus
Probab=96.10 E-value=0.0019 Score=67.31 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=117.4
Q ss_pred CCceeEEEEeeeeccCchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCccccc
Q psy586 52 QCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDL 131 (472)
Q Consensus 52 ~~~~~l~fr~kfy~~~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~ 131 (472)
+.|-.+.=|-.+|+......+.|+-..+++|.-.|.++|.|.|..++...|.+|++.++.-++.+...+|+..++..+.|
T Consensus 324 d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEel 403 (558)
T KOG4335|consen 324 DDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEEL 403 (558)
T ss_pred CccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHh
Confidence 34545555667777777777889999999999999999999999999999999999999999999988888877766533
Q ss_pred --CchHHHhhcCCCHHHHHHH-HHHHHHhh---cCCChHHHHH--HHHHHHhcccCCCceEEeee--------ecCCCce
Q psy586 132 --LPQRVIDQYQMTPEMWEDR-IKIWYADH---RGMSRDEAEM--EYLKIAQDLDMYGVNYFPIS--------NKKDTDL 195 (472)
Q Consensus 132 --lP~~v~~~~~~~~~~~e~~-I~~~h~~~---~g~s~~eA~~--~yLkiaq~l~~yG~~~F~vk--------~~~~~~~ 195 (472)
+|+.... .++.. -|.+. |...|+.. .|++.+.|.+ .+++.|..+|.||+.++.-. |.+-.+.
T Consensus 404 k~~~~t~~~-~~~~~-~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~ 481 (558)
T KOG4335|consen 404 KSWDHTSPE-EEEPI-LWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPA 481 (558)
T ss_pred cccCCCCCh-hhcch-hhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCccccccc
Confidence 2222111 11212 24443 55555543 6677777765 59999999999999998753 2333688
Q ss_pred EEEecCCceEEEecCCc
Q psy586 196 WLGVTALGLNIYEKENK 212 (472)
Q Consensus 196 ~LgV~~~GI~i~~~~~k 212 (472)
.++|| +|+.++.....
T Consensus 482 ~vqv~-k~l~~ls~q~~ 497 (558)
T KOG4335|consen 482 PVQVN-KGLPKLSRQGS 497 (558)
T ss_pred ccccc-ccchhhccchh
Confidence 99998 99999876655
No 32
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=95.95 E-value=0.00034 Score=57.37 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=39.7
Q ss_pred cCcceee-cceeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhH
Q psy586 349 YGVNYFP-ISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIE 397 (472)
Q Consensus 349 YGv~~~~-v~~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~ 397 (472)
-|+.++- |+..||.|+..+.++. ...|+|+.|.+++|++|+|.|...+
T Consensus 3 ~~~~~~LGv~~~GI~i~~~~~~~~-~~~f~W~~I~~l~~~~k~F~I~~~~ 51 (90)
T PF09380_consen 3 NGSPLWLGVSPRGISIYRDNNRIS-TQFFPWSEISKLSFKKKKFTIEVRD 51 (90)
T ss_dssp TSBEEEEEEESSEEEEEETTBSSS-SEEEEGGGEEEEEEETTEEEEEESS
T ss_pred CCCEEEEEEcCCEeEEEeCCCccc-ceeeehhheeEEEecccEEEEEEee
Confidence 4666554 5788999997766665 6789999999999999999999975
No 33
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.92 E-value=0.037 Score=54.13 Aligned_cols=47 Identities=47% Similarity=0.512 Sum_probs=40.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy586 409 EAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAME 455 (472)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (472)
+++||++.+++.++.++++++++|+.+|.++.+++++.+|+.+...+
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999888777666655443
No 34
>KOG3727|consensus
Probab=95.42 E-value=0.02 Score=60.63 Aligned_cols=284 Identities=15% Similarity=0.217 Sum_probs=151.8
Q ss_pred cccccccchhhhccCccCCCceeEEEEee-eeccCchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Q psy586 34 FIAWLKLDKKVQDQGISNQCTTPFMFLAK-FYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAK 112 (472)
Q Consensus 34 ~~~wL~~~kkl~~q~~~~~~~~~l~fr~k-fy~~~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~ 112 (472)
..-|++....+++|++.......+.|+-. ||-.++ .-+.+....+|.|+|.+||..++.|+.+.+..+||++.|+.
T Consensus 238 n~gwldSs~s~meq~~~e~d~~~lrfk~~~ffdlnp---kyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~ 314 (664)
T KOG3727|consen 238 NVGWLDSSRSLMEQGIREYDTLLLRFKYFTFFDLNP---KYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVN 314 (664)
T ss_pred ccCCchhhhHHHHccchHHHHHHHHHhhhhhhhccc---ccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 35789999999999877666555555332 333333 55788899999999999999999999999999999999986
Q ss_pred hCCC--CCCCCc--------------------cCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy586 113 YGDY--DDSTYK--------------------PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEY 170 (472)
Q Consensus 113 ~Gd~--~~~~~~--------------------~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~y 170 (472)
+--- .+.... ++ ...-..+|.......-+.++. .. .+|..+.-....+
T Consensus 315 ~~~~~~~~~~d~~dd~d~~l~el~~tl~~~~~~~-~~D~t~ipel~dy~~~~kpk~--------~~-~Kg~kr~f~t~~d 384 (664)
T KOG3727|consen 315 HQRDSTPPGENNEDDVDSALDELEITLEGPALGR-RGDITRIPELADYLKYLKPKK--------LT-LKGYKRYFFTFRD 384 (664)
T ss_pred HhhhcCCCCCCCcchhHHHHHHHHHhhhccCcCC-ccccccCCcccchhhhhchhh--------hh-hhhhhhHHHHHHH
Confidence 6321 111000 00 000011111100000000000 00 1222111111111
Q ss_pred HHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCCCCCceeeeh
Q psy586 171 LKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFS 250 (472)
Q Consensus 171 Lkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~~~~~vF~t 250 (472)
|-+ .+| ..+|..+ +.+ -.-++..|..+...- .+.+.+|. +|.|++....-..+...+
T Consensus 385 l~~----~~~-~s~~~s~---~ap-~~~i~l~gcev~~dV------------~~~~~k~~--i~l~~~~~~~msEi~LRC 441 (664)
T KOG3727|consen 385 LHL----SLY-KSSEDSR---GAP-AISINLKGCEVTPDV------------NLSQQKYA--IKLLVPTAEGMSEIWLRC 441 (664)
T ss_pred HHH----HHH-hhHhhhc---CCC-CCchhhcCcccCCcc------------ccccccce--EEEEeecCCccceeEEec
Confidence 111 111 1122111 211 111233333332110 12223333 466666433222222221
Q ss_pred hhhh---------hhhhcCc-ccCCCcc---hhhhhhhcchhhhhCC-CC-CCCCCCCcccccccCChhhhhhhcCChhH
Q psy586 251 LKVR---------MNKLYGD-YDDSTYK---PGMLASEDLLPQRYGD-YD-DSTYKPGMLASEDLLPQRVIDQYQMTPEM 315 (472)
Q Consensus 251 ~q~r---------~~~l~g~-l~c~~~~---~~~Las~~~~Qae~GD-y~-~~~~~~~yl~~~~~lP~~~~~~~~~~~~~ 315 (472)
.+-. +-...|+ +--|.++ -.+|+-+ .+|.-=+. -. ...-.+.-+..+.|+.++.+.+++ ...
T Consensus 442 d~E~QYA~WMAaCrLASKGktMADSSY~sEV~sIlsfL-~MQ~~n~g~~q~~~~~~~~d~np~~~vSPr~~rk~k--sKQ 518 (664)
T KOG3727|consen 442 DNEQQYARWMAACRLASKGKTMADSSYQSEVQSILSFL-KMQRPNSGSRQAAPVKLPRDVNPECYVSPRYVRKLK--SKQ 518 (664)
T ss_pred CCHHHHHHHHHHhhHhhcCCccccccccHHHHHHHHHH-HhcCCCCCCCcCCcccCcCCCCchhhcCHHHHHHHh--hHH
Confidence 1111 1112222 2122222 2234433 45544332 11 112235567888999999998775 667
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeec
Q psy586 316 WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356 (472)
Q Consensus 316 ~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v 356 (472)
+..||.+-|+..+.||-.||.+.||+.=|.|+.+||+||-|
T Consensus 519 ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfiv 559 (664)
T KOG3727|consen 519 ITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIV 559 (664)
T ss_pred HHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEE
Confidence 99999999999999999999999999999999999999988
No 35
>KOG0817|consensus
Probab=95.05 E-value=0.098 Score=46.59 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
-|..+...+-+=.-..+.++.++|=||-=||..||++.. .|++++. .. ...|.. |+.+.|
T Consensus 8 ~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~--kPg~~d~--------~~-----k~Kw~A-----W~~l~~ 67 (142)
T KOG0817|consen 8 KFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTP--KPGFFDE--------EG-----KAKWQA-----WNSLGG 67 (142)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCC--CCchhhH--------HH-----HHHHHH-----HHhcCC
Confidence 444444444333333677999999999999999988744 4565521 11 234554 899999
Q ss_pred CChHHHHHHHHHHHhcc-cCCCceE
Q psy586 161 MSRDEAEMEYLKIAQDL-DMYGVNY 184 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l-~~yG~~~ 184 (472)
||+++||..|+.++..+ |.||...
T Consensus 68 ~s~~eA~~~Yv~~~~~l~~~~~~~~ 92 (142)
T KOG0817|consen 68 MSKEEAMEAYVEKVEELIPKYGAEA 92 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999887 8888876
No 36
>KOG0248|consensus
Probab=94.99 E-value=0.0058 Score=65.77 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=97.3
Q ss_pred ceeecceeeEEEecCCC-CCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCccc--ccccCC
Q psy586 226 HISFDDKKFIIKPVDKS-SPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLA--SEDLLP 302 (472)
Q Consensus 226 ~~sf~~kkF~I~~~d~~-~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~--~~~~lP 302 (472)
.++++...|.......+ .....|...+...-|..|+.+-++..+..+|++ -.|.+|||-+ +.++.+-|. .+.|-|
T Consensus 675 ~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL-~aq~~~gd~~-~~~k~q~l~qv~~rFyP 752 (936)
T KOG0248|consen 675 ALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAAL-YAQMVFGDAN-QSLSDQQFEFISQRFYP 752 (936)
T ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHH-HHHHhhcccc-ccchHHHHHHHHHHhCh
Confidence 34445554554443322 234556667777889999999999999999998 8888998877 333333332 257788
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc
Q psy586 303 QRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS 357 (472)
Q Consensus 303 ~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~ 357 (472)
.++.+- -..+.+..+|..-|..+.|||+.|..-=||-+|+..+.+|..+|.++
T Consensus 753 ~ryrdg--a~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~ 805 (936)
T KOG0248|consen 753 SKMLDV--ACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEAS 805 (936)
T ss_pred hhhhcc--CCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcC
Confidence 887753 35688999999999999999999999999999999999999999773
No 37
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=94.83 E-value=0.15 Score=39.92 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhc
Q psy586 80 LFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHR 159 (472)
Q Consensus 80 LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~ 159 (472)
..|.|+..+|-.=.-.-+.++.+.|=||--|+..||-+.. .|++++.. ..+ .| +.|..++
T Consensus 4 ~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~e--kPG~~d~~--------gr~-----K~-----eAW~~LK 63 (87)
T COG4281 4 TRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGE--KPGFFDIV--------GRY-----KY-----EAWAGLK 63 (87)
T ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCC--CCCccccc--------cch-----hH-----HHHhhcc
Confidence 4688999988765444566788999999999999998755 46776322 111 13 3578999
Q ss_pred CCChHHHHHHHHHHHhccc
Q psy586 160 GMSRDEAEMEYLKIAQDLD 178 (472)
Q Consensus 160 g~s~~eA~~~yLkiaq~l~ 178 (472)
|.|+++|..+||.++..|.
T Consensus 64 GksqedA~qeYialVeeLk 82 (87)
T COG4281 64 GKSQEDARQEYIALVEELK 82 (87)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 9999999999999998773
No 38
>KOG4335|consensus
Probab=94.77 E-value=0.029 Score=58.75 Aligned_cols=244 Identities=17% Similarity=0.178 Sum_probs=150.3
Q ss_pred EeeeeccCchhhhcchhHHHHHHHHHHHHHhccc--cccCHHHHHHHHHH-HHHHHhCCCCCCCCccCcCcc----cccC
Q psy586 60 LAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMD--IYCPPEASVLLASY-AVQAKYGDYDDSTYKPGMLAS----EDLL 132 (472)
Q Consensus 60 r~kfy~~~~~~~l~~~~t~~LlylQvk~~iL~g~--~~c~~e~av~LAAl-~~Qa~~Gd~~~~~~~~~~l~~----~~~l 132 (472)
|..|++.+-..+++++.-..+.|..++.+++.++ ++|+.+....++|| .+-.++|+|.+-.+..-.++. ..++
T Consensus 204 rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~~~~qs~f 283 (558)
T KOG4335|consen 204 RNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLSEKLQSFF 283 (558)
T ss_pred hhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchHHHHHHHh
Confidence 5667887777778888888899999999999998 88999999999999 889999999987776555552 3788
Q ss_pred chHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCc
Q psy586 133 PQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENK 212 (472)
Q Consensus 133 P~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k 212 (472)
|.++.+. -+.-.+.- .|++.-...+.-.-|.....+.--+ ++.+..+-+| +++-....+
T Consensus 284 ~~w~cs~------~lslqlk~---~h~p~~~v~~wp~LL~e~~N~sp~~-------d~p~~~l~r~-----v~l~~~~ek 342 (558)
T KOG4335|consen 284 PAWLCSR------GLSLQLKL---RHRPARAVPGWPELLNEYRNVSPVS-------DDPGCELARG-----VHLRAYLEK 342 (558)
T ss_pred HHHHhhc------chhhhhhh---ccCCcccccccHHHHHHHhcCCccC-------Cccchhhhhc-----ccchhhhHh
Confidence 8887652 11112222 2233222222222232222211111 1111111111 111000000
Q ss_pred cccceeeecccccceeecceeeEEEecCCCCC--ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCC
Q psy586 213 LTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP--NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTY 290 (472)
Q Consensus 213 ~~p~~~f~ws~I~~~sf~~kkF~I~~~d~~~~--~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~ 290 (472)
-+ +.+ -.++| ...|.+.+.|.+.-.....+.+|+. .++--+|-+..+.|
T Consensus 343 -------------------------~i--edp~~~~ilf-~eaR~n~L~Gfy~~~~~k~v~va~i-~l~~vhv~~Ss~Kh 393 (558)
T KOG4335|consen 343 -------------------------CI--EDPFYGCILF-HEARDNPLQGFYHRGGRKSVSVASI-SLEGVHVVDSSEKH 393 (558)
T ss_pred -------------------------hh--hchhhhhhhh-hhhhhhhhccccccCCceeeehhhh-hcccceeecccccc
Confidence 00 011 12344 6688899999999999999999988 89999999999999
Q ss_pred CCCcccccccC--ChhhhhhhcCChhHHHHHHHHHHHhc---cCCChhHHHHH--HHHHhhhccccCccee
Q psy586 291 KPGMLASEDLL--PQRVIDQYQMTPEMWEDRIKIWYADH---RGMSRDEAEME--YLKIAQDLDMYGVNYF 354 (472)
Q Consensus 291 ~~~yl~~~~~l--P~~~~~~~~~~~~~~~~~I~~~h~~~---~G~s~~eAe~~--yL~~a~~L~~YGv~~~ 354 (472)
+...+..+.+- |+. ..-.++..-+++--|...++.. .|.+..-|+++ +++.|=.++.||+.++
T Consensus 394 ~~~vl~lEelk~~~~t-~~~~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~ 463 (558)
T KOG4335|consen 394 VLLVLNLEELKSWDHT-SPEEEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPA 463 (558)
T ss_pred chhcccHHHhcccCCC-CChhhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhcccccc
Confidence 98888766442 221 0101222233333344444433 47777777755 4788888999999876
No 39
>KOG3552|consensus
Probab=93.74 E-value=0.031 Score=62.23 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=84.0
Q ss_pred eeeehhhhhhhhhcCcc--cCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccc----cccCChhhhhhhcCChhHHHHH
Q psy586 246 FIFFSLKVRMNKLYGDY--DDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLAS----EDLLPQRVIDQYQMTPEMWEDR 319 (472)
Q Consensus 246 ~vF~t~q~r~~~l~g~l--~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~----~~~lP~~~~~~~~~~~~~~~~~ 319 (472)
|-|.+.|...|+...|+ .-..+-|.-||+++.-|+-+-.-....-+..|+.. +.|+|..++. .|...++.+.
T Consensus 285 feYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~sll~--~MK~K~ikka 362 (1298)
T KOG3552|consen 285 FEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPVSLLE--GMKRKEIKKA 362 (1298)
T ss_pred HHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccHHHHh--hhhHHHHHHH
Confidence 44667899999999987 33344588899996667777665555666777744 5999999986 5556777777
Q ss_pred HHHHHHhc-------cCCChhHHHHHHHHHhhhccccCcceeecc
Q psy586 320 IKIWYADH-------RGMSRDEAEMEYLKIAQDLDMYGVNYFPIS 357 (472)
Q Consensus 320 I~~~h~~~-------~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~ 357 (472)
|.-+-|.. +-+|..+|.++||+|-.+|+.||-..|.++
T Consensus 363 iSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~at 407 (1298)
T KOG3552|consen 363 ISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSAT 407 (1298)
T ss_pred HHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhh
Confidence 77666644 235567899999999999999999999873
No 40
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=93.57 E-value=0.17 Score=41.05 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=44.1
Q ss_pred cCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHH
Q psy586 263 DDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKI 342 (472)
Q Consensus 263 ~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~ 342 (472)
..+.+.-..|=|| -=||..||++.. .|+.+.. ....--.-|+.+.|||+++|+-.|++.
T Consensus 18 ~~~~~~~L~lYal-yKQAt~G~~~~~--~P~~~d~------------------~~~~K~~AW~~l~~ms~~eA~~~YV~~ 76 (85)
T cd00435 18 KPSNEEKLQLYSL-YKQATVGDCNTE--RPGMFDL------------------KGRAKWDAWNSLKGMSKEDAMKAYIAK 76 (85)
T ss_pred CcCHHHHHHHHHH-HHHhccCCCCCC--CCCcccH------------------hhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455555556565 569999999843 2332211 111122467889999999999999999
Q ss_pred hhhc-cccC
Q psy586 343 AQDL-DMYG 350 (472)
Q Consensus 343 a~~L-~~YG 350 (472)
+..| +.||
T Consensus 77 ~~~l~~~~~ 85 (85)
T cd00435 77 VEELIAKYA 85 (85)
T ss_pred HHHHhhccC
Confidence 8876 5665
No 41
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=92.66 E-value=0.19 Score=40.93 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=40.9
Q ss_pred ccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH-HHHHHhccCCChhHHHHHHH
Q psy586 262 YDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI-KIWYADHRGMSRDEAEMEYL 340 (472)
Q Consensus 262 l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I-~~~h~~~~G~s~~eAe~~yL 340 (472)
...+.+.-..|=|| -=||..|||+.. .|+++ ++..+. -+-++.+.|||+.+|+-.|+
T Consensus 19 ~~~~~~~~L~LYal-yKQAt~Gd~~~~--~P~~~-------------------d~~~~~K~~AW~~l~gms~~eA~~~Yi 76 (87)
T PF00887_consen 19 SQLSNDDKLELYAL-YKQATHGDCDTP--RPGFF-------------------DIEGRAKWDAWKALKGMSKEEAMREYI 76 (87)
T ss_dssp STS-HHHHHHHHHH-HHHHHTSS--S---CTTTT-------------------CHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHHhCCCcCC--CCcch-------------------hHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 34555556666676 779999999933 33332 122222 35688899999999999999
Q ss_pred HHhhhc
Q psy586 341 KIAQDL 346 (472)
Q Consensus 341 ~~a~~L 346 (472)
+.+..|
T Consensus 77 ~~v~~~ 82 (87)
T PF00887_consen 77 ELVEEL 82 (87)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 42
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=92.05 E-value=0.42 Score=38.66 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHHhCC-CccCceeEE-EEcCCCcccccccchhhhcc--CccCC-CceeEEEEee
Q psy586 1 WRATGRDLFDLVCRTVGL-RETWYFGLQ-YEDNKGFIAWLKLDKKVQDQ--GISNQ-CTTPFMFLAK 62 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL-~e~~~FGL~-~~~~~~~~~wL~~~kkl~~q--~~~~~-~~~~l~fr~k 62 (472)
+.||++||+..+++++|+ .+...|+|+ +....+..+-|..+...... .|+.. ....|.||.+
T Consensus 25 ~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~~f~lr~~ 91 (93)
T PF00788_consen 25 SSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNSRFVLRRK 91 (93)
T ss_dssp TTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCceEEEEEEc
Confidence 579999999999999999 667899997 56566666777776654332 13322 3667777753
No 43
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=91.97 E-value=0.33 Score=38.80 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLD 41 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~ 41 (472)
|.+|.+||..+++.++++...+-|||+.. .+|..+-|.++
T Consensus 22 P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~-vdg~~~qLadd 61 (87)
T cd01776 22 PYITTEDVCQLCAEKFKVTQPEEYSLFLF-VEETWQQLAPD 61 (87)
T ss_pred CCCcHHHHHHHHHHHhccCChhheeEEEE-ECCcEEEcCcc
Confidence 78999999999999999999999999966 34554455554
No 44
>KOG2412|consensus
Probab=91.82 E-value=2.4 Score=45.34 Aligned_cols=61 Identities=25% Similarity=0.266 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy586 404 EKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEE 464 (472)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (472)
.+..++..|+.+.|.|++.++-||++|+-.++..+..++.+-.+++++++.|++-...+++
T Consensus 212 i~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~~ 272 (591)
T KOG2412|consen 212 IRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAE 272 (591)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666777777888888877777777777777777766666554444443
No 45
>PLN03086 PRLI-interacting factor K; Provisional
Probab=90.69 E-value=1.2 Score=48.37 Aligned_cols=51 Identities=29% Similarity=0.355 Sum_probs=34.3
Q ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy586 398 RNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREK 451 (472)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (472)
++||++|.+.|++..|.+++.|++. .++.+++.|+++.+..+.|..|-+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLERERKA---KEEAAKQREAIEAAQRSRRLDAIEAQ 59 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888888888887755 34566666666666655555444443
No 46
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=90.24 E-value=9.6 Score=34.55 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
.|-|.-|.++=-.|....-... ..+++.|++++.-+.+.+..+.+
T Consensus 23 kfawkPI~~~LeeR~~~I~~~L-----d~Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 23 RPAKKAILNSLDAKILEVQEKV-----LKAEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888777555544 44444444455444444444433
No 47
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=88.62 E-value=8.5 Score=34.89 Aligned_cols=81 Identities=14% Similarity=0.009 Sum_probs=44.2
Q ss_pred CCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy586 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAME 455 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (472)
|-|+.|.++--.|+...-... ..+++.+++++..+.+.|++++....+.+.. .......+..+++.++..++
T Consensus 30 f~~ppI~~iLe~R~~~I~~~L-----~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I---~~e~~~~~~a~~~~~~~~~e 101 (155)
T PRK06569 30 FITPKAEEIFNNRQTNIQDNI-----TQADTLTIEVEKLNKYYNEEIDKTNTEIDRL---KKEKIDSLESEFLIKKKNLE 101 (155)
T ss_pred HhHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 667777777666666444333 4444455555555555555444333332222 22234445566777777888
Q ss_pred HHHHhHHHH
Q psy586 456 QRLVQYQEE 464 (472)
Q Consensus 456 ~~~~~~~~~ 464 (472)
.+|..+=++
T Consensus 102 a~L~~~~~~ 110 (155)
T PRK06569 102 QDLKNSINQ 110 (155)
T ss_pred HHHHHHHHH
Confidence 877765433
No 48
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=88.62 E-value=1.6 Score=35.38 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHHhCCCc-cCceeEEEEcCCCcccccccchhhhc-cC-cc-CCCceeEEEEee
Q psy586 1 WRATGRDLFDLVCRTVGLRE-TWYFGLQYEDNKGFIAWLKLDKKVQD-QG-IS-NQCTTPFMFLAK 62 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e-~~~FGL~~~~~~~~~~wL~~~kkl~~-q~-~~-~~~~~~l~fr~k 62 (472)
+.||+.|++..+.+++|+.. ...|.|...-.++..+-|.++..... +. |+ .+....|.+|.+
T Consensus 24 ~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~~~~~~~~f~lr~~ 89 (90)
T smart00314 24 SRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLWPRRGPNLRFVLRKR 89 (90)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhCCCCCCcEEEEEEeC
Confidence 57999999999999999987 68999997754565566666544322 21 22 234566776653
No 49
>KOG1029|consensus
Probab=88.09 E-value=4.1 Score=45.34 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=8.0
Q ss_pred CCHHHHHHHhhhhhh
Q psy586 376 DTMEIQQMKSQAKEE 390 (472)
Q Consensus 376 f~w~~i~~~s~~rk~ 390 (472)
-+++.-++-.|.|-.
T Consensus 312 ~TFEDKrkeNy~kGq 326 (1118)
T KOG1029|consen 312 VTFEDKRKENYEKGQ 326 (1118)
T ss_pred cchhhhhHHhHhhhh
Confidence 345566666555433
No 50
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=87.60 E-value=1.6 Score=36.44 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=50.5
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC---CCCCceeeehhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD---KSSPNFIFFSLK 252 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d---~~~~~~vF~t~q 252 (472)
.+.+|.|++..|.+.+..++ .+...||+..|++....++.|.++... .....|.|.+++
T Consensus 22 g~~~L~l~~~~l~L~~~~~~-~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~ 83 (100)
T PF02174_consen 22 GPYLLCLTPDELILIDPQSG-EPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPD 83 (100)
T ss_dssp EEEEEEEESSEEEEEETTTT-EEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEEST
T ss_pred EEEEEEECCCEEEEecCCCC-ceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCC
Confidence 47899999999999888777 478999999999999999999999963 234568888877
No 51
>KOG0163|consensus
Probab=86.64 E-value=9.5 Score=42.53 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.9
Q ss_pred HHHHhhhccc
Q psy586 339 YLKIAQDLDM 348 (472)
Q Consensus 339 yL~~a~~L~~ 348 (472)
+.+|+..|.+
T Consensus 852 ~~ei~s~lke 861 (1259)
T KOG0163|consen 852 TIEILSRLKE 861 (1259)
T ss_pred HHHHHHHHhc
Confidence 3444555554
No 52
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=86.60 E-value=17 Score=33.23 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQY 425 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
..+++.+++++..+.+.++++.+.
T Consensus 51 ~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 51 DEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444444443
No 53
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=86.12 E-value=1.9 Score=36.23 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=51.0
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLKV 253 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q~ 253 (472)
.+.||-|++..+.+.+.++. .+...|||.-|+++..+++.|.++-..+ ....|+|.+.+.
T Consensus 21 G~y~L~v~~~~l~L~d~~~~-~~l~~WP~~~LRryG~d~~~FsFEAGRrC~tGeG~f~F~t~~~ 83 (104)
T cd01203 21 GSYMLRMGPTELQLKSEDLG-ATLYMWPYRFLRKYGRDKGKFSFEAGRRCTSGEGVFTFDTTQG 83 (104)
T ss_pred eeEEEEEcCCEEEEEcCCCC-cEEEEeehHhhhhhcccCCEEEEEecCcCCCCCcEEEEecCCH
Confidence 47999999999999998775 5789999999999999999999998543 345688988874
No 54
>KOG1029|consensus
Probab=85.95 E-value=9 Score=42.76 Aligned_cols=9 Identities=44% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy586 425 YQEEIRLAN 433 (472)
Q Consensus 425 ~~~~~~~~~ 433 (472)
.+|+-|+++
T Consensus 362 rqEqErk~q 370 (1118)
T KOG1029|consen 362 RQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.80 E-value=17 Score=31.88 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy586 403 REKQLREAAEREKCAMEQRLV 423 (472)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~ 423 (472)
..++.+.+++....+.++++.
T Consensus 47 ~Ae~~~~ea~~~~~~~e~~L~ 67 (140)
T PRK07353 47 EAKERLAEAEKLEAQYEQQLA 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 56
>KOG3878|consensus
Probab=85.31 E-value=1.4 Score=44.15 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred cccCHHHHHHHHHHHHHHHhCCCCCCCC-ccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q psy586 94 IYCPPEASVLLASYAVQAKYGDYDDSTY-KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLK 172 (472)
Q Consensus 94 ~~c~~e~av~LAAl~~Qa~~Gd~~~~~~-~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLk 172 (472)
++.+-|+-++|.||.-|+.+|.|+++.. ..|+|+ |+ -+.....|+.+..||+++||..|..
T Consensus 51 ~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lD--------v~----------GnDr~~~W~~LG~~sre~AM~~FV~ 112 (469)
T KOG3878|consen 51 IHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLD--------VI----------GNDRQQHWQLLGEISREQAMEGFVD 112 (469)
T ss_pred cCCChhhhhhhhhhHhhhhcCCCCcccCcccceee--------cc----------cChHHHHHHHHhcccHHHHHHHHHH
Confidence 5678899999999999999999997654 345552 12 1346677899999999999999999
Q ss_pred HHhcc
Q psy586 173 IAQDL 177 (472)
Q Consensus 173 iaq~l 177 (472)
+.-++
T Consensus 113 Lldr~ 117 (469)
T KOG3878|consen 113 LLDRM 117 (469)
T ss_pred HHHhc
Confidence 88664
No 57
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=85.21 E-value=17 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=19.2
Q ss_pred CCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q psy586 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLV 423 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (472)
|-|.-|.+.=-.|+....... ..+++.+++++....+.++++.
T Consensus 38 ~l~kpi~~~l~~R~~~I~~~l-----~~Ae~~~~eA~~~~~e~e~~L~ 80 (175)
T PRK14472 38 IAWGPILSALEEREKGIQSSI-----DRAHSAKDEAEAILRKNRELLA 80 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555443333 3333344444444444444333
No 58
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=84.75 E-value=1.4 Score=35.87 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHHHhCCCc--cCceeEEEEcC
Q psy586 2 RATGRDLFDLVCRTVGLRE--TWYFGLQYEDN 31 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e--~~~FGL~~~~~ 31 (472)
+.++.++++.+|++|||++ ..||+|+.+.+
T Consensus 21 s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~ 52 (87)
T cd01777 21 NATTDQVYQALVAKAGMDSYTQNYFALFEVIN 52 (87)
T ss_pred cccHHHHHHHHHHHhCCCHHHHhheeeeEEec
Confidence 4578999999999999986 48999998854
No 59
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=84.62 E-value=20 Score=32.37 Aligned_cols=15 Identities=7% Similarity=-0.146 Sum_probs=6.7
Q ss_pred CCHHHHHHHhhhhhh
Q psy586 376 DTMEIQQMKSQAKEE 390 (472)
Q Consensus 376 f~w~~i~~~s~~rk~ 390 (472)
|-|.-+.++=-.|+.
T Consensus 42 ~l~~Pi~~~l~~R~~ 56 (156)
T CHL00118 42 ILYKPLLKVLDERKE 56 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 60
>PTZ00458 acyl CoA binding protein; Provisional
Probab=84.57 E-value=2.2 Score=35.00 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHH-HHHHhccCCChhHHHHHHHHH
Q psy586 264 DSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIK-IWYADHRGMSRDEAEMEYLKI 342 (472)
Q Consensus 264 c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~-~~h~~~~G~s~~eAe~~yL~~ 342 (472)
.+...-..|=|| -=||..||++... |+.+ .+..|.. .-+..+.|||+++|+-.|++.
T Consensus 21 ~s~d~~L~lYal-yKQAt~G~c~~~~--P~~~-------------------d~~~raKw~AW~~l~~ms~~eA~~~YI~l 78 (90)
T PTZ00458 21 LSVEIKLDLYKY-YKQSTVGNCNIKE--PSMF-------------------KYQDRKKYEAWKSIENLNREDAKKRYVEI 78 (90)
T ss_pred CCHHHHHHHHHH-HhhhccCCCCCCC--CCcc-------------------cHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344444445454 4599999997532 2211 1112221 356678999999999999999
Q ss_pred hhhc
Q psy586 343 AQDL 346 (472)
Q Consensus 343 a~~L 346 (472)
+..|
T Consensus 79 ~~~l 82 (90)
T PTZ00458 79 VTEL 82 (90)
T ss_pred HHHH
Confidence 9887
No 61
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=84.49 E-value=24 Score=33.44 Aligned_cols=15 Identities=0% Similarity=-0.126 Sum_probs=6.4
Q ss_pred CCHHHHHHHhhhhhh
Q psy586 376 DTMEIQQMKSQAKEE 390 (472)
Q Consensus 376 f~w~~i~~~s~~rk~ 390 (472)
|-|+-|.++--.|+.
T Consensus 73 ~~~~pI~~vLe~R~~ 87 (204)
T PRK09174 73 VILPRIGGIIETRRD 87 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=84.39 E-value=19 Score=33.01 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=13.6
Q ss_pred CCCHHHHHHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
.|-|.-|.++=-.|+.......
T Consensus 35 ~~~~kpi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 35 KFAWDVILKALDERASGVQNDI 56 (173)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3666667776666666554444
No 63
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=84.24 E-value=19 Score=33.44 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 374 KPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 374 ~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
..|.|.-|.++--.|+.......+.
T Consensus 42 ~~fl~kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 42 IYFGKGVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888766665533
No 64
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=84.11 E-value=18 Score=31.84 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALK----CVKVSEREAAEREKCAMEQRLVQYQEEIRLA 468 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
..++...+...++..|.|++-+.+++..+.. ....+++...++++.+.+++..++...+...
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777788889999999999988876 6777889999999999999988888777544
No 65
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=83.79 E-value=2.7 Score=35.50 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=49.9
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC---CCCCceeeehhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD---KSSPNFIFFSLK 252 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d---~~~~~~vF~t~q 252 (472)
.+.+|-+++..|.+++.++. .+...||+..|++...++..|.+...- .....|.|.+.+
T Consensus 21 G~y~L~lt~~~l~L~~~~~~-~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~ 82 (104)
T cd00824 21 GSYRLCLTSKELTLVKLGSR-VALVVWPLMFLRRYGYDSNLFSFEAGRRCVTGEGIFTFQTDR 82 (104)
T ss_pred eeEEEEECCCEEEEEecCCC-ceEEEeehHHeeecccCCCEEEEEccCcCCCCCCEEEEEcCC
Confidence 47899999999999998876 578999999999999999999999853 234568888764
No 66
>PTZ00121 MAEBL; Provisional
Probab=83.38 E-value=14 Score=44.27 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=13.5
Q ss_pred HHHHHhccccccCHHHHHHHHHHHHHH
Q psy586 85 VKQAILSMDIYCPPEASVLLASYAVQA 111 (472)
Q Consensus 85 vk~~iL~g~~~c~~e~av~LAAl~~Qa 111 (472)
+.-.+|.-..+-+.|....-.+++|..
T Consensus 700 I~tG~Lnk~~~~~vEip~~kSG~AM~~ 726 (2084)
T PTZ00121 700 IHTGYLGKIFIKDVEIPYDKSGIAMHH 726 (2084)
T ss_pred HHhhhcccccccceeecccchhhHHhc
Confidence 334444444444555555555555543
No 67
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=83.33 E-value=30 Score=32.03 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy586 412 EREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAA 447 (472)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (472)
++.+.+.++.+.++++.+..|+..-....+.++..|
T Consensus 68 e~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 68 EERREEAIEKLEKARARLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333333333333333
No 68
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=83.25 E-value=32 Score=31.52 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQYQE 427 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (472)
...++.+++++....+.++++.+.+.
T Consensus 57 ~~Ae~~~~eA~~~~~e~e~~l~~a~~ 82 (173)
T PRK13460 57 NKASELRLEAEALLKDYEARLNSAKD 82 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 69
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=83.13 E-value=3.8 Score=32.83 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHHhCCC-ccCceeEEEEcCC-Ccccccccchhhhc---cCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLR-ETWYFGLQYEDNK-GFIAWLKLDKKVQD---QGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~-e~~~FGL~~~~~~-~~~~wL~~~kkl~~---q~~~~~~~~~l~fr~ 61 (472)
+.+|+.|++..+.++.|+. ....|+|...-.+ +..+-|.++.+... ...+......|.+|.
T Consensus 21 ~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr~ 86 (87)
T cd01768 21 KDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLRK 86 (87)
T ss_pred CCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEec
Confidence 4789999999999999998 7789999976444 34445555554332 112223445566554
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=83.03 E-value=26 Score=32.51 Aligned_cols=17 Identities=0% Similarity=-0.156 Sum_probs=8.5
Q ss_pred CCHHHHHHHhhhhhhhh
Q psy586 376 DTMEIQQMKSQAKEEKS 392 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~ 392 (472)
|-|+.|.++=-.|+...
T Consensus 51 ~l~~PI~~~l~~R~~~I 67 (181)
T PRK13454 51 VALPRIGAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555433
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=82.81 E-value=31 Score=32.72 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=16.8
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
.|-|.-+.++--.|+...-...+.
T Consensus 67 k~l~kPi~~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 67 FLFWKPTQRFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888877877766665543
No 72
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=82.68 E-value=21 Score=35.02 Aligned_cols=22 Identities=0% Similarity=-0.129 Sum_probs=14.5
Q ss_pred CCCHHHHHHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
.|-|.-|.++=-.|++......
T Consensus 24 ~fl~kPi~~~l~eR~~~I~~~l 45 (250)
T PRK14474 24 RFLYKPIIQVMKKRQQRIANRW 45 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777555554
No 73
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=82.59 E-value=32 Score=31.86 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=5.2
Q ss_pred hhhhhhhh
Q psy586 389 EEKSRRQI 396 (472)
Q Consensus 389 k~f~i~~~ 396 (472)
++|..+|+
T Consensus 49 ~k~l~~PI 56 (181)
T PRK13454 49 TRVALPRI 56 (181)
T ss_pred HHHHHHHH
Confidence 56666666
No 74
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=82.46 E-value=26 Score=32.21 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=12.3
Q ss_pred CCCHHHHHHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
.|-|.-|.++=-.|+.......
T Consensus 37 ~~l~~pi~~~l~~R~~~I~~~l 58 (173)
T PRK13453 37 KFAWGPLKDVMDKRERDINRDI 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665444444
No 75
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=82.39 E-value=24 Score=33.47 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 400 KLAREKQLREAAEREKCAMEQRLVQY 425 (472)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
.+..+++.+++++....+.++++.+.
T Consensus 87 ~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 87 EINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444444444433
No 76
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=82.30 E-value=28 Score=31.14 Aligned_cols=24 Identities=4% Similarity=-0.094 Sum_probs=15.8
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
.|-|+.|.+.=-.|+.......+.
T Consensus 23 ~~~~~pi~~~l~~R~~~I~~~l~~ 46 (156)
T PRK05759 23 KFVWPPIMKALEERQKKIADGLAA 46 (156)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777766555533
No 77
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=81.94 E-value=30 Score=32.84 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 409 EAAEREKCAMEQRLVQYQEEIRLANEALKCVKV 441 (472)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (472)
..+++.+.+.++.+.++++++..|+.+-....+
T Consensus 94 ~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 94 DQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444433333
No 78
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=81.67 E-value=40 Score=30.91 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=44.4
Q ss_pred hhhhhhhhhHH---hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy586 388 KEEKSRRQIER---NKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQ 456 (472)
Q Consensus 388 rk~f~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (472)
=++|.-+|+-+ +|.++=...-..+++.+.+.++.+.+++..+..|+..-....+.++..+++.+.+...
T Consensus 35 L~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 106 (175)
T PRK14472 35 LKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITE 106 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666643 2222223344556667777888888899998888877777777777777766655433
No 79
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=81.45 E-value=42 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy586 411 AEREKCAMEQRLVQYQEEIRLANEAL 436 (472)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (472)
+++.+.+.+..+.++++.+..|+..-
T Consensus 53 Ae~~k~eAe~~~~~~e~~L~~A~~ea 78 (167)
T PRK14475 53 AQRLREEAQALLADVKAEREEAERQA 78 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 80
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=81.14 E-value=31 Score=31.22 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=14.4
Q ss_pred CCCHHHHHHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
.|-|.-|.++=-.|+...-...
T Consensus 27 ~~l~~pi~~~l~~R~~~I~~~l 48 (164)
T PRK14471 27 KFAWKPILGAVKEREDSIKNAL 48 (164)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776555554
No 81
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=81.00 E-value=43 Score=30.71 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQY 425 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
..+++.+++++..+.+.++++.+.
T Consensus 59 ~~Ae~~~~eA~~~~~e~e~~l~~a 82 (173)
T PRK13453 59 DDAEQAKLNAQKLEEENKQKLKET 82 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 82
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=80.54 E-value=34 Score=30.96 Aligned_cols=22 Identities=0% Similarity=-0.136 Sum_probs=14.0
Q ss_pred CCCHHHHHHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~ 396 (472)
.|-|.-|.++=-.|+...-...
T Consensus 27 ~fl~kpi~~~l~~R~~~I~~~l 48 (164)
T PRK14473 27 TFLYRPVLNLLNERTRRIEESL 48 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666555444
No 83
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=80.49 E-value=27 Score=34.02 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQY 425 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
.|-|.-|.++=-.|+...-... ..+++.+++++..+.+.++++.+.
T Consensus 24 kfl~kPi~~~l~~R~~~I~~~l-----~~Ae~~~~eA~~~~~e~e~~l~~a 69 (246)
T TIGR03321 24 RFLYRPILDAMDAREKKIAGEL-----ADADTKKREAEQERREYEEKNEEL 69 (246)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665443333 334444444444444444444333
No 84
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=80.10 E-value=35 Score=31.30 Aligned_cols=23 Identities=4% Similarity=-0.129 Sum_probs=16.1
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIE 397 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~ 397 (472)
.|-|.-|.++=-.|+.......+
T Consensus 38 ~fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 38 YFGRGFLGKILEERREAILQALK 60 (174)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 46777788777777776666553
No 85
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=79.67 E-value=5.6 Score=33.22 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=48.3
Q ss_pred ceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 194 DLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 194 ~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
..+|-+++..|.+.+.+.+ .+...||+..|++..+++..|.++..-. ....|.|.+.+
T Consensus 21 ~y~L~lt~~~L~L~~~~~~-~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~ 81 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPR-VELVVWPLLSLRRYGRDKNFFFFEAGRRCVSGPGEFTFQTVV 81 (98)
T ss_pred eEEEEECCcEEEEEecCCC-ccEEEeehhHeeeecCCCCEEEEEccCcCCCCCCEEEEEcCc
Confidence 6899999999999997766 4789999999999999999999998532 34567787654
No 86
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=79.52 E-value=44 Score=29.60 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=20.2
Q ss_pred CCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q psy586 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRL 422 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (472)
|-|+-|.++=-.|+...-... ..+++.+++++..+.+.+..+
T Consensus 27 fl~kPi~~~l~~R~~~I~~~l-----~~A~~~~~ea~~~~~e~e~~l 68 (141)
T PRK08476 27 WLYKPLLKFMDNRNASIKNDL-----EKVKTNSSDVSEIEHEIETIL 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665443333 333333444444444444433
No 87
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=79.31 E-value=40 Score=30.80 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=13.8
Q ss_pred CCHHHHHHHhhhhhhhhhhhh
Q psy586 376 DTMEIQQMKSQAKEEKSRRQI 396 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~i~~~ 396 (472)
|-|.-|.++=-.|+.......
T Consensus 42 fl~kPi~~~l~~R~~~I~~~l 62 (167)
T PRK08475 42 FAAKPLKNFYKSRINKISKRL 62 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776554444
No 88
>KOG2412|consensus
Probab=79.30 E-value=15 Score=39.42 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQYQEE 428 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (472)
.++++.|.++||.+.+-++.+++.+++
T Consensus 217 ~~~e~kr~Eaerk~~~~qEe~Rqk~d~ 243 (591)
T KOG2412|consen 217 ERSEEKREEAERKRRAHQEELRQKEDE 243 (591)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444444333
No 89
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=79.02 E-value=50 Score=29.90 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=20.8
Q ss_pred hhhhhhhhhHH----------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy586 388 KEEKSRRQIER----------NKLAREKQLREAAEREKCAMEQRLVQYQEE 428 (472)
Q Consensus 388 rk~f~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (472)
=++|..+|+-+ +.+..+++.+++++..+.+.++++.+.+.+
T Consensus 25 l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~e 75 (164)
T PRK14471 25 LAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAE 75 (164)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666632 334455555555555555555544444333
No 90
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=79.02 E-value=49 Score=29.79 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=17.0
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
.|-|.-|.++=-.|+.......+.
T Consensus 24 ~f~~kpi~~~l~~R~~~I~~~l~~ 47 (159)
T PRK13461 24 HFFFDKIKAVIDSRQSEIDNKIEK 47 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888777777776666644
No 91
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.45 E-value=44 Score=30.04 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQYQ 426 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (472)
..+++.+.+++....+.++++.+.+
T Consensus 46 ~~A~~~~~eA~~~~~e~~~~l~~a~ 70 (159)
T PRK13461 46 EKADEDQKKARELKLKNERELKNAK 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 92
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=78.44 E-value=54 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
+.+..+++.+++++....+.++++.+
T Consensus 57 ~~l~~A~~~~~ea~~~~~~~~~~L~~ 82 (174)
T PRK07352 57 QALKEAEERLRQAAQALAEAQQKLAQ 82 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555554444444433
No 93
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.02 E-value=39 Score=30.66 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=40.5
Q ss_pred hhhhhhhhhhhHH---hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy586 386 QAKEEKSRRQIER---NKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAER 449 (472)
Q Consensus 386 ~~rk~f~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (472)
+-=++|..+++.+ .|..+=...-..+++.+.+.++-..+++++++.|+.+........+..+..
T Consensus 25 ~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a 91 (155)
T PRK06569 25 IFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES 91 (155)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677644 223333334556777788888888888888888888876666544444433
No 94
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=76.94 E-value=57 Score=30.17 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=5.8
Q ss_pred HHHHHHHhHHHHHHH
Q psy586 407 LREAAEREKCAMEQR 421 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~ 421 (472)
.+++++....+.+++
T Consensus 73 ~~~eA~~~l~e~e~~ 87 (184)
T PRK13455 73 LREEAQTLLASYERK 87 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343333333333
No 95
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=76.65 E-value=58 Score=31.68 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAM 454 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (472)
.-..+++.+.+.++.+.++++.+..|+.+-....++++..|++++.++
T Consensus 44 ~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i 91 (246)
T TIGR03321 44 ELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRL 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577777778888888888888887776666666666665554433
No 96
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=76.13 E-value=59 Score=31.85 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQY 425 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (472)
..+++.+++++..+.+.++++.+.
T Consensus 46 ~~Ae~~~~eA~~~~~e~e~~l~~a 69 (250)
T PRK14474 46 QDAEQRQQEAGQEAERYRQKQQSL 69 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 97
>PLN03086 PRLI-interacting factor K; Provisional
Probab=74.62 E-value=13 Score=40.73 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQ 420 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~ 420 (472)
.|+.+|+++|+++-+++++.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~ 46 (567)
T PLN03086 25 LKLERERKAKEEAAKQREAIEA 46 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 98
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=73.88 E-value=69 Score=28.95 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Q psy586 401 LAREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
+..+++.+++++..+.+.+.++.+
T Consensus 48 l~~Ae~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14473 48 LRDAEKVREQLANAKRDYEAELAK 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 99
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=73.59 E-value=71 Score=28.95 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=36.1
Q ss_pred hhhhhhhhHHhhhHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 389 EEKSRRQIERNKLAREK---QLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAERE 450 (472)
Q Consensus 389 k~f~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (472)
++|.=+|+-+-=-.|+. ..-..+++.+.+.++-+.+.++.++.|+..-....++++..+++.
T Consensus 22 ~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~ 86 (154)
T PRK06568 22 YRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKI 86 (154)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555331112222 234457777888888888888888877666555555555444443
No 100
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=73.37 E-value=74 Score=29.06 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=4.0
Q ss_pred hhhhhhh
Q psy586 390 EKSRRQI 396 (472)
Q Consensus 390 ~f~i~~~ 396 (472)
+|.-+|+
T Consensus 41 ~fl~kPi 47 (167)
T PRK08475 41 YFAAKPL 47 (167)
T ss_pred HHHHHHH
Confidence 3665665
No 101
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=72.99 E-value=59 Score=34.70 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
.|-|.-|.++=-.|+....+..+.
T Consensus 20 kfl~~Pi~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 20 RFVVPPVRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888877666644
No 102
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=72.37 E-value=74 Score=28.61 Aligned_cols=22 Identities=0% Similarity=-0.224 Sum_probs=11.9
Q ss_pred CCCHHHH--HHHhhhhhhhhhhhh
Q psy586 375 PDTMEIQ--QMKSQAKEEKSRRQI 396 (472)
Q Consensus 375 ~f~w~~i--~~~s~~rk~f~i~~~ 396 (472)
++.|..+ --+.+-=++|.-+|.
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi 47 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPL 47 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445433 344455566777776
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=71.99 E-value=38 Score=38.27 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=7.1
Q ss_pred HHHHHH-hcccCCCceE
Q psy586 169 EYLKIA-QDLDMYGVNY 184 (472)
Q Consensus 169 ~yLkia-q~l~~yG~~~ 184 (472)
-|.++. +.||..+..-
T Consensus 192 ~~~~~l~~~lp~~~~~~ 208 (697)
T PF09726_consen 192 FYMQLLQQALPPEEQQM 208 (697)
T ss_pred HHHHHHHHhCCCccchh
Confidence 344333 3456554333
No 104
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=71.91 E-value=65 Score=29.69 Aligned_cols=18 Identities=50% Similarity=0.700 Sum_probs=10.5
Q ss_pred HHhhhHHHHHHHHHHHHh
Q psy586 397 ERNKLAREKQLREAAERE 414 (472)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (472)
+|-+|||+.+.+++-+|.
T Consensus 30 EkRRlAReQkErEE~ER~ 47 (171)
T PF05672_consen 30 EKRRLAREQKEREEQERL 47 (171)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 555666666666655443
No 105
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=71.78 E-value=71 Score=28.17 Aligned_cols=23 Identities=4% Similarity=-0.036 Sum_probs=16.1
Q ss_pred CCCHHHHHHHhhhhhhhhhhhhH
Q psy586 375 PDTMEIQQMKSQAKEEKSRRQIE 397 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f~i~~~~ 397 (472)
.|-|+-|.++--.|+...-...+
T Consensus 14 ~~~~~pi~~~l~~R~~~I~~~l~ 36 (147)
T TIGR01144 14 KYVWPPLAKAIETRQKKIADGLA 36 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887777776655553
No 106
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=71.61 E-value=50 Score=35.22 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
..+++.+++++..+.+.++++.+
T Consensus 42 ~eAe~a~~ea~~~~~~~e~~L~~ 64 (445)
T PRK13428 42 AESATAADRLAEADQAHTKAVED 64 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 107
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=71.00 E-value=7.3 Score=34.63 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=47.5
Q ss_pred ecCCCceEEEecCCceEEEecCCccccceeeecccccceee---cceeeEEEecCCCCCceeeehhhhhhhhhcCcccCC
Q psy586 189 NKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISF---DDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDS 265 (472)
Q Consensus 189 ~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf---~~kkF~I~~~d~~~~~~vF~t~q~r~~~l~g~l~c~ 265 (472)
..+...+||-|+..||.+++..++. .+..+|-..|.-.+- ..+-|.....+.+ ..+.||.-+ ...+-+.+..+
T Consensus 49 ~~kk~kV~L~IS~dGi~v~D~~T~~-ll~~~~i~rISfca~D~~d~r~FsyI~~~~~-~~H~f~~~k--~~k~A~~i~lt 124 (139)
T cd01215 49 GAHKTRITLQINIDGIKVLDEKTGA-VLHHHPVHRISFIARDSTDARAFGYVYGEPG-GKHRFYGIK--TAQAADQVVLA 124 (139)
T ss_pred ccccceEEEEEccCCEEEEcCCCCc-EEEeeceeeEEEEecCCCCCeEEEEEEEcCC-CcEEEEEEE--hHHcchhhhhh
Confidence 3455789999999999999998874 466666554433222 2455655554422 245555333 43444445555
Q ss_pred Ccchhhhh
Q psy586 266 TYKPGMLA 273 (472)
Q Consensus 266 ~~~~~~La 273 (472)
...|..+|
T Consensus 125 i~~aF~va 132 (139)
T cd01215 125 IRDLFQVV 132 (139)
T ss_pred HHHHHHHH
Confidence 54554443
No 108
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=70.97 E-value=8 Score=31.13 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGF 34 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~ 34 (472)
|+.+-.+|.+.|++++++.+..-|.|.|.|+.|.
T Consensus 18 ~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd 51 (82)
T cd06407 18 PSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEE 51 (82)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCC
Confidence 5678899999999999998767899999987764
No 109
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=70.54 E-value=64 Score=27.63 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=18.4
Q ss_pred CCHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy586 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEE 428 (472)
Q Consensus 376 f~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (472)
|-|+.|.+.=-.|+...-... ...+..+++++....+.+.++.+.+.+
T Consensus 19 ~~~~pi~~~l~~R~~~I~~~~-----~~a~~~~~ea~~~~~e~~~~l~~a~~e 66 (132)
T PF00430_consen 19 FLYKPIKKFLDERKAKIQSEL-----EEAEELKEEAEQLLAEYEEKLAEAREE 66 (132)
T ss_dssp HTHHHHHHHCS--S-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444444332222 333334444444444444444443333
No 110
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=68.61 E-value=8.3 Score=31.38 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.7
Q ss_pred CcccHHHHHHHHHHHhCCCcc--CceeEEEEcCCCccc
Q psy586 1 WRATGRDLFDLVCRTVGLRET--WYFGLQYEDNKGFIA 36 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~--~~FGL~~~~~~~~~~ 36 (472)
|+....+|...|++++|+... ..|.|.|.|+.|+..
T Consensus 19 ~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~V 56 (86)
T cd06409 19 PSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIV 56 (86)
T ss_pred CCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEE
Confidence 677889999999999999864 789999998877643
No 111
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=67.99 E-value=64 Score=33.73 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.8
Q ss_pred CHHHHH
Q psy586 377 TMEIQQ 382 (472)
Q Consensus 377 ~w~~i~ 382 (472)
.|..|+
T Consensus 63 q~~~~q 68 (387)
T PRK09510 63 QYNRQQ 68 (387)
T ss_pred HHHHHH
Confidence 454443
No 112
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=67.74 E-value=76 Score=28.09 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHHhhhHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy586 386 QAKEEKSRRQIERNKLAREK---QLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438 (472)
Q Consensus 386 ~~rk~f~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (472)
+-=++|..+|.-+-=-.|++ ..-..+++.+.+.+....++++.++.|..+-..
T Consensus 22 ~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~ 77 (141)
T PRK08476 22 VILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANK 77 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777332112222 234445666666777777777777766554433
No 113
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=67.25 E-value=86 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy586 411 AEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAERE 450 (472)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (472)
++..+.+.++.+.++++.+..|+..-....++++..++++
T Consensus 48 Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~ 87 (140)
T PRK07353 48 AKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKL 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444444444444444443
No 114
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=67.11 E-value=22 Score=32.30 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy586 444 REAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
++.+++|+.+-|++|+++-..+
T Consensus 133 ~~~a~ke~~~kEe~lr~lA~~a 154 (158)
T PF02731_consen 133 KELAEKEKEEKEEKLRELAQRA 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444
No 115
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=66.57 E-value=57 Score=30.16 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy586 408 REAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAE 448 (472)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (472)
-..+++.+.+.++.+.++++++..|+..-....++++.+++
T Consensus 67 l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 67 LEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666666655555544444444444443
No 116
>KOG3859|consensus
Probab=66.21 E-value=1.4e+02 Score=30.05 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=43.8
Q ss_pred CHHHHHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy586 377 TMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQ 456 (472)
Q Consensus 377 ~w~~i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (472)
|.+-+.....+|+.|.=... ++|+..|.. --+|..+-|.+++.|..+|-...+.++..-.+|+..+|+
T Consensus 317 p~s~qet~eaKr~e~~~e~q-----rkEee~rqm-------FvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~ 384 (406)
T KOG3859|consen 317 PFSLQETYEAKRNEFLGELQ-----RKEEEMRQM-------FVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEE 384 (406)
T ss_pred CccHHHHHHHHHHHHHHHHH-----HhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666777777654443 334322222 233444555566666666655555556666666666666
Q ss_pred HHHhHHHHH
Q psy586 457 RLVQYQEEI 465 (472)
Q Consensus 457 ~~~~~~~~~ 465 (472)
.-++++||.
T Consensus 385 ~rr~Leee~ 393 (406)
T KOG3859|consen 385 KRKQLEEEV 393 (406)
T ss_pred HHHHHHHHH
Confidence 667777765
No 117
>KOG4257|consensus
Probab=66.08 E-value=5.2 Score=44.01 Aligned_cols=112 Identities=12% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCCceeeehhhhhhhhhcCcc-cCCCcchhhhhhhcchhhhhCCCCCCC----CCCCcccc----cccCChhhhhhhcCC
Q psy586 242 SSPNFIFFSLKVRMNKLYGDY-DDSTYKPGMLASEDLLPQRYGDYDDST----YKPGMLAS----EDLLPQRVIDQYQMT 312 (472)
Q Consensus 242 ~~~~~vF~t~q~r~~~l~g~l-~c~~~~~~~Las~~~~Qae~GDy~~~~----~~~~yl~~----~~~lP~~~~~~~~~~ 312 (472)
+..+++||..|++.|...--- ..+.+.|.+||.+ -+-..|-+.+... +.-++|.. ..|+|+++++-++
T Consensus 112 D~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL-~vrr~Fk~~~~na~~kksh~e~lekevglksffPksl~~~~K-- 188 (974)
T KOG4257|consen 112 DSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACL-KVRRDFKEHQHNAPGKKSHLEDLEKEVGLKSFFPKSLHNPFK-- 188 (974)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHhCcccCCCccccHHHHHHHhhHHhhChHhhhcccC--
Confidence 356788888999998775533 5566779999998 8888888766543 22345543 3899999988654
Q ss_pred hhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeec
Q psy586 313 PEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356 (472)
Q Consensus 313 ~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v 356 (472)
+..+.+-|.+-+++...+++.|..+.|+.+-...-.+.++.|.+
T Consensus 189 pk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~ 232 (974)
T KOG4257|consen 189 PKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKC 232 (974)
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheee
Confidence 78899999999999999999999999988877666677777776
No 118
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.04 E-value=97 Score=27.54 Aligned_cols=9 Identities=11% Similarity=-0.215 Sum_probs=4.9
Q ss_pred hhhhhhhhh
Q psy586 388 KEEKSRRQI 396 (472)
Q Consensus 388 rk~f~i~~~ 396 (472)
=++|..+|+
T Consensus 21 l~~~~~~pi 29 (156)
T PRK05759 21 IMKFVWPPI 29 (156)
T ss_pred HHHHhHHHH
Confidence 344665665
No 119
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=65.91 E-value=1.3e+02 Score=30.34 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy586 409 EAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSE 443 (472)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (472)
++.|.+++...++.+|-+|.-++++...+...|+.
T Consensus 104 kQle~er~~a~e~qkq~eEa~kq~~~~qkqqeEqa 138 (387)
T COG3064 104 KQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333344444455544444444444
No 120
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=65.53 E-value=86 Score=26.77 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=35.5
Q ss_pred hhhhhhhhhHH---hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy586 388 KEEKSRRQIER---NKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCA 453 (472)
Q Consensus 388 rk~f~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (472)
=.+|..+|..+ +|-..=...-..++..+.+.++...++++.+..|+..-....+.++..+++.+.+
T Consensus 16 l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~ 84 (132)
T PF00430_consen 16 LNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE 84 (132)
T ss_dssp HHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566644 2222333334445556666666677777777777666655555555555554433
No 121
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=65.16 E-value=23 Score=29.64 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=51.4
Q ss_pred ceEEeee--ecCC---CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 182 VNYFPIS--NKKD---TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 182 ~~~F~vk--~~~~---~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
.+-|.|. |.+| ...||-|+..-|.++.++.+ ...|||.-|++..+++..|.+.-.-+ ....|.|-+.+
T Consensus 5 ~~~F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~---~~~WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~~ 80 (102)
T cd01202 5 SNSFRVINVDDDGNELGSGWLELTRTELTLYISGKE---PVVWPLLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCKR 80 (102)
T ss_pred CcEEEEEEECCCCCeeeeEEEEecceEEEEEcCCCC---EEEccHHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcCC
Confidence 3456663 3333 47899999999999976554 38999999999999999999998532 34567888766
No 122
>KOG0817|consensus
Probab=65.09 E-value=14 Score=32.94 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=25.7
Q ss_pred HHHhccCCChhHHHHHHHHHhhhcc-ccCcce
Q psy586 323 WYADHRGMSRDEAEMEYLKIAQDLD-MYGVNY 353 (472)
Q Consensus 323 ~h~~~~G~s~~eAe~~yL~~a~~L~-~YGv~~ 353 (472)
-+..+.|||+++|+-.|+..+..|. .||-..
T Consensus 61 AW~~l~~~s~~eA~~~Yv~~~~~l~~~~~~~~ 92 (142)
T KOG0817|consen 61 AWNSLGGMSKEEAMEAYVEKVEELIPKYGAEA 92 (142)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 3888999999999999999988775 666554
No 123
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.45 E-value=64 Score=37.00 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=7.0
Q ss_pred cCCChhHHHHH
Q psy586 328 RGMSRDEAEME 338 (472)
Q Consensus 328 ~G~s~~eAe~~ 338 (472)
.|+.|.+...-
T Consensus 413 ~GtD~~eg~al 423 (771)
T TIGR01069 413 AGTDPDEGSAL 423 (771)
T ss_pred CCCCHHHHHHH
Confidence 57777775533
No 124
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=63.01 E-value=25 Score=30.18 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=33.0
Q ss_pred ecCCCceEEEecCCceEEEecCCccccceeeecccccceeec
Q psy586 189 NKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD 230 (472)
Q Consensus 189 ~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~ 230 (472)
...+.++.|-|+..||.+.+..++ .++..||...|.-.+..
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~-~~l~~~~l~~Isf~~~~ 80 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTK-AVLHEHPLRRISFCAVG 80 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCC-eEEEEccccceEEEecC
Confidence 355678999999999999998877 46888998888655554
No 125
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=62.87 E-value=1.2e+02 Score=27.56 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 424 QYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQ 462 (472)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (472)
+-+++..+..++|..+...+.+.|.++|.+ +|...+.
T Consensus 112 ~KEe~~~~k~~~l~e~~q~Aqe~A~~~Kq~--~R~r~l~ 148 (157)
T PF15236_consen 112 EKEEEQTRKTQELYEAMQRAQEEAQREKQE--QRIRELE 148 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344445555666666666666666666633 4444443
No 126
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=62.38 E-value=25 Score=29.58 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=36.6
Q ss_pred ecCCCceEEEecCCceEEEecCCccccceeeecccccceeec---ceeeEEEec
Q psy586 189 NKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD---DKKFIIKPV 239 (472)
Q Consensus 189 ~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~---~kkF~I~~~ 239 (472)
...+.+++|-|+..||.+.+.+++ ..+..||.+.|.-++.. .+-|.+...
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~~-~~l~~~~l~~Is~~~~~~~~~~~F~~i~~ 90 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKTK-EVLASHPIRRISFCAADPDDLRIFAFIAR 90 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCCC-cEEEeeccceEEEEECCCCCCcEEEEEEE
Confidence 356688999999999999999876 45788888877765554 334444443
No 127
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.20 E-value=79 Score=36.27 Aligned_cols=16 Identities=13% Similarity=-0.122 Sum_probs=8.6
Q ss_pred cccccCCCCHHHHHHH
Q psy586 369 FMRRRKPDTMEIQQMK 384 (472)
Q Consensus 369 ~~~~~~~f~w~~i~~~ 384 (472)
.+.++..+|=..|...
T Consensus 487 ~iA~~~Glp~~ii~~A 502 (771)
T TIGR01069 487 EIAQRYGIPHFIIEQA 502 (771)
T ss_pred HHHHHhCcCHHHHHHH
Confidence 3445556666555443
No 128
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=61.43 E-value=1.3e+02 Score=27.32 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHhhhhhhhh
Q psy586 374 KPDTMEIQQMKSQAKEEKS 392 (472)
Q Consensus 374 ~~f~w~~i~~~s~~rk~f~ 392 (472)
..|-|+.|.++--.|..-.
T Consensus 24 ~~~~~~pi~~~l~~R~~~I 42 (161)
T COG0711 24 KKFVWKPILKALDERQAKI 42 (161)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3477777777777766643
No 129
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=61.14 E-value=9.8 Score=33.26 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=28.9
Q ss_pred cCCCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 190 KKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 190 ~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
.+..++.|-|+..||.+.++.++. .+..+|-.+|.-.+
T Consensus 42 ~k~~~V~L~IS~~gi~i~d~~t~~-~l~~~~i~~ISfc~ 79 (132)
T cd01267 42 EKIPKVELDISIKGVKIIDPKTKT-VLHGHPLYNISCCA 79 (132)
T ss_pred CCCCeEEEEEEcCcEEEEeCCCCc-EEEEcccceEEEEe
Confidence 356789999999999999998874 56777666555444
No 130
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=60.08 E-value=23 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=33.1
Q ss_pred ecCCCceEEEecCCceEEEecCCccccceeeecccccceee
Q psy586 189 NKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISF 229 (472)
Q Consensus 189 ~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf 229 (472)
...+.+++|.|+..||.+.+.+++ ..+..+|-..|.-++.
T Consensus 48 ~~~~~~V~l~vs~~gI~v~~~~t~-~~l~~~~i~~Is~~~~ 87 (140)
T PF00640_consen 48 KKKPQKVTLNVSSDGIKVIDPDTG-EVLMSHPIRRISFCAV 87 (140)
T ss_dssp TSTSEEEEEEEETTEEEEEETTTT-CEEEEEEGGGEEEEEE
T ss_pred cccCeEEEEEEcCCeEEEecCccc-cccccCCccceEEEEe
Confidence 345678999999999999998876 3578899888887777
No 131
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.95 E-value=86 Score=36.04 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=7.7
Q ss_pred ccccCCCCHHHHHHH
Q psy586 370 MRRRKPDTMEIQQMK 384 (472)
Q Consensus 370 ~~~~~~f~w~~i~~~ 384 (472)
+.++..+|=+.|.+.
T Consensus 493 iA~~~Glp~~ii~~A 507 (782)
T PRK00409 493 IAKRLGLPENIIEEA 507 (782)
T ss_pred HHHHhCcCHHHHHHH
Confidence 344556665555443
No 132
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=59.93 E-value=25 Score=28.91 Aligned_cols=60 Identities=18% Similarity=0.064 Sum_probs=41.3
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccC-----ccCCCceeEEEEe
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQG-----ISNQCTTPFMFLA 61 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~-----~~~~~~~~l~fr~ 61 (472)
+.+-.+|.++|++.++|....-|.|.|.|.+|...=|..+.-+.+.. ..+..++++...+
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~~ 88 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVTV 88 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEEE
Confidence 57889999999999999887889999999877644444444443321 1234555555444
No 133
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=59.77 E-value=13 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.384 Sum_probs=21.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYE 29 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~ 29 (472)
|+++..|+++++|++.|+... -++|.+-
T Consensus 15 p~~~l~~VL~eac~k~~l~~~-~~~L~h~ 42 (65)
T PF11470_consen 15 PNTTLNQVLEEACKKFGLDPS-SYDLKHN 42 (65)
T ss_dssp TTSBHHHHHHHHHHHTT--GG-G-EEEET
T ss_pred CCCCHHHHHHHHHHHcCCCcc-ceEEEEC
Confidence 789999999999999999877 5777665
No 134
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=59.75 E-value=1.2e+02 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Q psy586 401 LAREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
+...+..+++++....+.++++.+
T Consensus 35 l~~A~~~~~ea~~~~~e~~~~l~~ 58 (147)
T TIGR01144 35 LASAERAKKEAALAQKKAQVILKE 58 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 135
>KOG2077|consensus
Probab=59.63 E-value=51 Score=35.82 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHH----------------------HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy586 412 EREKCAMEQRLVQYQEEIRLANEALKCVKV----------------------SEREAAEREKCAMEQRLVQYQEEIR 466 (472)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (472)
..+++.+|.+.+++|||++.+..++..... .+|-.. +|-...+||+.|||-+|
T Consensus 349 kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM--eRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 349 KQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM--ERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHh
Confidence 345666777888888888887665543311 122222 34567789999998663
No 136
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.08 E-value=93 Score=35.77 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=6.1
Q ss_pred cCCChhHHH
Q psy586 328 RGMSRDEAE 336 (472)
Q Consensus 328 ~G~s~~eAe 336 (472)
.|..|.+..
T Consensus 418 ~GtDp~eg~ 426 (782)
T PRK00409 418 AGTDPDEGA 426 (782)
T ss_pred CCCCHHHHH
Confidence 588877644
No 137
>KOG4661|consensus
Probab=58.99 E-value=78 Score=34.44 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=6.5
Q ss_pred hhhhhhhhhhhhHH
Q psy586 385 SQAKEEKSRRQIER 398 (472)
Q Consensus 385 s~~rk~f~i~~~~~ 398 (472)
|-.|.+.-+...|+
T Consensus 600 s~srekr~~~sfdk 613 (940)
T KOG4661|consen 600 SRSREKRRERSFDK 613 (940)
T ss_pred HHHHHhhhhhhHHh
Confidence 44444444444444
No 138
>PF14317 YcxB: YcxB-like protein
Probab=58.90 E-value=17 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.0
Q ss_pred ecCCceEEEecCCccccceeeecccccceeecceeeEEEec
Q psy586 199 VTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPV 239 (472)
Q Consensus 199 V~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~ 239 (472)
++..||.+..... ...++|++|.++.-.++.|.|...
T Consensus 1 f~~~gi~~~~~~~----~~~~~w~~i~~v~e~~~~~~l~~~ 37 (62)
T PF14317_consen 1 FDEDGIIIESGNG----SSRIPWSDIKKVVETKDYFYLYLG 37 (62)
T ss_pred CCCCEEEEEECCe----EEEEEchheEEEEEeCCEEEEEEC
Confidence 4678888866443 368999999999999988888664
No 139
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=58.16 E-value=68 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy586 442 SEREAAEREKCAMEQRLVQYQEEIRLANE 470 (472)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (472)
++...+++.+.+++.++.++++++..+..
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677778888888888888876543
No 140
>PTZ00121 MAEBL; Provisional
Probab=57.68 E-value=1.3e+02 Score=36.74 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=5.0
Q ss_pred cccCCCceE
Q psy586 176 DLDMYGVNY 184 (472)
Q Consensus 176 ~l~~yG~~~ 184 (472)
++|.||-++
T Consensus 670 SCPNYGK~i 678 (2084)
T PTZ00121 670 SCPNYGKAI 678 (2084)
T ss_pred CCCCCCceE
Confidence 456666554
No 141
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=57.53 E-value=89 Score=26.19 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 400 KLAREKQLREAAEREKCAMEQRLVQYQEEI-RLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|..+.+.+..++..+..+++.+..|-..+ ..||.-. ..|.+++..++.+..+++++.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MV--------a~ar~e~~~~e~k~~~le~~l 60 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMV--------ADARRERAALEEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554443333 3333322 334455666666666666554
No 142
>KOG4661|consensus
Probab=57.11 E-value=1.3e+02 Score=32.76 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.7
Q ss_pred hhhhcCcccC
Q psy586 255 MNKLYGDYDD 264 (472)
Q Consensus 255 ~~~l~g~l~c 264 (472)
.-.|.|++..
T Consensus 469 rTELHGrmIS 478 (940)
T KOG4661|consen 469 RTELHGRMIS 478 (940)
T ss_pred hhhhcceeee
Confidence 3345555543
No 143
>KOG1144|consensus
Probab=56.43 E-value=49 Score=37.39 Aligned_cols=7 Identities=43% Similarity=0.325 Sum_probs=3.7
Q ss_pred hhhhhhh
Q psy586 269 PGMLASE 275 (472)
Q Consensus 269 ~~~Las~ 275 (472)
-.+||++
T Consensus 113 dkllas~ 119 (1064)
T KOG1144|consen 113 DKLLASL 119 (1064)
T ss_pred HHHhhhc
Confidence 4456664
No 144
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.68 E-value=1.3e+02 Score=31.16 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy586 100 ASVLLASYAVQAKYGDY 116 (472)
Q Consensus 100 ~av~LAAl~~Qa~~Gd~ 116 (472)
+..-+.+|.+-.-||+-
T Consensus 36 Q~LIIlgLVLFmVYGn~ 52 (442)
T PF06637_consen 36 QFLIILGLVLFMVYGNV 52 (442)
T ss_pred HHHHHHHHHHHHhhCCc
Confidence 44455666666677775
No 145
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=55.66 E-value=35 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.2
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
+...++|-|+..||.+.+..++. ++..+|+..|.-.+
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk~-~i~~~~i~~ISfca 84 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTKG-LIVDQTIEKVSFCA 84 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCCc-EEEEEeEEEEEEEe
Confidence 45679999999999999998884 57777766554333
No 146
>KOG3859|consensus
Probab=55.06 E-value=1.2e+02 Score=30.36 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEee
Q psy586 151 IKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 187 (472)
Q Consensus 151 I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~v 187 (472)
|+-...+--..+..+...-=.++.+.|..-|+..|..
T Consensus 179 IIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqf 215 (406)
T KOG3859|consen 179 IIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQF 215 (406)
T ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeec
Confidence 3333344444555555555567777777777777654
No 147
>KOG3878|consensus
Probab=54.84 E-value=83 Score=31.95 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=41.6
Q ss_pred ccCCCcchhhhhhhcchhhhhCCCCCCCCC-CCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHH
Q psy586 262 YDDSTYKPGMLASEDLLPQRYGDYDDSTYK-PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340 (472)
Q Consensus 262 l~c~~~~~~~Las~~~~Qae~GDy~~~~~~-~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL 340 (472)
++.+-+.-.-|.|+ .-|+.+|.|+++.+. .|+|.. + -.-...-|+.+..||+++|+..|+
T Consensus 51 ~h~~YEd~lKLial-~kQv~~Gp~n~d~~p~~G~lDv---~---------------GnDr~~~W~~LG~~sre~AM~~FV 111 (469)
T KOG3878|consen 51 IHLSYEDNLKLIAL-KKQVALGPFNTDRAPALGVLDV---I---------------GNDRQQHWQLLGEISREQAMEGFV 111 (469)
T ss_pred cCCChhhhhhhhhh-HhhhhcCCCCcccCcccceeec---c---------------cChHHHHHHHHhcccHHHHHHHHH
Confidence 45555555566676 889999999987653 333321 1 112335567788999999999987
Q ss_pred HHh
Q psy586 341 KIA 343 (472)
Q Consensus 341 ~~a 343 (472)
+..
T Consensus 112 ~Ll 114 (469)
T KOG3878|consen 112 DLL 114 (469)
T ss_pred HHH
Confidence 653
No 148
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=54.38 E-value=18 Score=27.69 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCT 54 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~ 54 (472)
|+++...|++..|+..|++...-|-|.|.+ ..|++++++.+.++..++.
T Consensus 19 ~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG-----~~L~~~~T~~~~~ied~d~ 67 (72)
T PF11976_consen 19 PTTTVSKLIEKYCEKKGIPPEESIRLIFDG-----KRLDPNDTPEDLGIEDGDT 67 (72)
T ss_dssp TTSCCHHHHHHHHHHHTTTT-TTEEEEETT-----EEE-TTSCHHHHT-STTEE
T ss_pred CCCcHHHHHHHHHHhhCCCccceEEEEECC-----EEcCCCCCHHHCCCCCCCE
Confidence 678999999999999999885557777753 2478888888877665543
No 149
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=53.95 E-value=29 Score=27.48 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=38.6
Q ss_pred hhhhhhcch--hhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc
Q psy586 270 GMLASEDLL--PQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 347 (472)
Q Consensus 270 ~~Las~~~~--Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~ 347 (472)
.+|-.| +| |+-.||-|.+. ||++... .+++ -+-|..++|.|+++|.-+||..+..|.
T Consensus 24 ~LLkLY-AL~KQ~s~GD~~~ek--PG~~d~~--------gr~K----------~eAW~~LKGksqedA~qeYialVeeLk 82 (87)
T COG4281 24 ELLKLY-ALFKQGSVGDNDGEK--PGFFDIV--------GRYK----------YEAWAGLKGKSQEDARQEYIALVEELK 82 (87)
T ss_pred HHHHHH-HHHHhccccccCCCC--CCccccc--------cchh----------HHHHhhccCccHHHHHHHHHHHHHHHH
Confidence 344444 44 99999987655 4443322 1111 135678999999999999999998886
No 150
>KOG1144|consensus
Probab=53.45 E-value=52 Score=37.21 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhHH
Q psy586 402 AREKQLREAAEREKC 416 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (472)
++|++.|++-||.+.
T Consensus 229 ~eE~qkreeEE~~r~ 243 (1064)
T KOG1144|consen 229 EEERQKREEEERLRR 243 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344434444444333
No 151
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=53.13 E-value=20 Score=30.78 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=36.7
Q ss_pred ecCCceEEEecCCccccceeeecccccc----eeecceeeEEEe--cCCCCCceeeehhhhhhhhh
Q psy586 199 VTALGLNIYEKENKLTPKTTFPWSEIRH----ISFDDKKFIIKP--VDKSSPNFIFFSLKVRMNKL 258 (472)
Q Consensus 199 V~~~GI~i~~~~~k~~p~~~f~ws~I~~----~sf~~kkF~I~~--~d~~~~~~vF~t~q~r~~~l 258 (472)
|+-.|.-.|+..+.. --+.+||++|.. +.|++| +.-.. .++++.+|.|-+.+.+.-+-
T Consensus 29 iGDkaFEFyn~~n~~-dyIQIPW~eI~~V~a~V~fkgk-~I~RF~I~Tk~~G~f~Fsskd~k~~Lk 92 (118)
T PF06115_consen 29 IGDKAFEFYNDRNVE-DYIQIPWEEIDYVIASVSFKGK-WIPRFAIFTKKNGKFTFSSKDSKKVLK 92 (118)
T ss_pred EcccceEeecCCChh-hcEEeChhheeEEEEEEEECCC-EEeeEEEEECCCCEEEEEECChHHHHH
Confidence 346778888766553 368999999874 455444 22222 34456788888776555433
No 152
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=51.27 E-value=2.4e+02 Score=28.57 Aligned_cols=7 Identities=14% Similarity=-0.187 Sum_probs=3.7
Q ss_pred CHHHHHH
Q psy586 377 TMEIQQM 383 (472)
Q Consensus 377 ~w~~i~~ 383 (472)
.|..|+.
T Consensus 63 q~~r~q~ 69 (387)
T COG3064 63 QYGRIQS 69 (387)
T ss_pred HHHHHHH
Confidence 5655543
No 153
>KOG2002|consensus
Probab=50.97 E-value=1.5e+02 Score=34.56 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhcccCCCceE
Q psy586 163 RDEAEMEYLKIAQDLDMYGVNY 184 (472)
Q Consensus 163 ~~eA~~~yLkiaq~l~~yG~~~ 184 (472)
.+.|...|-.|....|.|=-.|
T Consensus 512 ~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred hhHHHHHHHHHHHHCchhHHHH
Confidence 4667778888888888873333
No 154
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=50.91 E-value=1.9e+02 Score=26.15 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHH
Q psy586 400 KLAREKQLREAAEREKCAMEQ 420 (472)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ 420 (472)
.+..+++.+++++....+.++
T Consensus 45 ~l~~A~~~~~ea~~~~~~~~~ 65 (161)
T COG0711 45 DLAEAERLKEEAQALLAEYEQ 65 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455444443333333
No 155
>KOG2129|consensus
Probab=50.31 E-value=3e+02 Score=29.03 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=13.0
Q ss_pred CHHHHHHHhhhhhhhhhhh
Q psy586 377 TMEIQQMKSQAKEEKSRRQ 395 (472)
Q Consensus 377 ~w~~i~~~s~~rk~f~i~~ 395 (472)
.|-.+.++-..++...+|.
T Consensus 206 LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5777777777766655555
No 156
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.01 E-value=1.4e+02 Score=29.15 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy586 449 REKCAMEQRLVQYQEEI 465 (472)
Q Consensus 449 ~~~~~~~~~~~~~~~~~ 465 (472)
.++..|+.++..++.++
T Consensus 75 eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEI 91 (246)
T ss_dssp ------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555565555555
No 157
>KOG0994|consensus
Probab=49.89 E-value=1.4e+02 Score=35.39 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHhHHH
Q psy586 399 NKLAREKQLREAAEREKCA 417 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (472)
...+|++.+..+++|++..
T Consensus 1539 ~di~ra~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERARSR 1557 (1758)
T ss_pred hhHHHHHHHHHHHHHHHhH
Confidence 3335555555555554443
No 158
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=48.94 E-value=1.4e+02 Score=28.65 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQ 462 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (472)
.|...-...+|+|.-.....||+|+-++.+..... +=..|-+||+|..+++.++-
T Consensus 6 LRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~-Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 6 LRQKLLYTTLELEATKMEANEELRKREEQIAHLKD-LLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777666677777777776666555 44466778888888887776
No 159
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.96 E-value=2e+02 Score=25.57 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQE 463 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (472)
+.+++..+|+++..+...|....+.+++.-.++ ..++++...++.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a-e~~eRkv~~le~ 122 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKA-EHFERKVKALEQ 122 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHh
Confidence 333444444444444444444444333322222 344444444433
No 160
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=47.87 E-value=17 Score=31.59 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=37.3
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccceeec---ceeeEEEecCCC
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD---DKKFIIKPVDKS 242 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~---~kkF~I~~~d~~ 242 (472)
.|....|-|+..||.+.+++++. +....++.+|..-+-. .+.|-+...+..
T Consensus 41 ~nrtm~~~I~~~~v~lispdtK~-vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~ 94 (129)
T cd01269 41 DNRTMLFQVGRFEINLISPDTKS-VVLEKNFKDISSCSQGIKHVDHFGFICRESP 94 (129)
T ss_pred CCcEEEEEEeccceEEEcCCcce-EEEecCccccchhhcCCCCcceEEEEeccCC
Confidence 36678999999999999999995 6788888887754443 345555554443
No 161
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=47.80 E-value=2e+02 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy586 444 REAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
++++-+.++.++++.....+++
T Consensus 58 ke~~~Kl~E~iekkieeaR~da 79 (175)
T COG4741 58 KEEEWKLKEWIEKKIEEAREDA 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444443
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.92 E-value=1e+02 Score=34.83 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=23.5
Q ss_pred cccchhhhccCccCCCceeEEEEeeeeccCchhhhcc-hh-HHHHHHHHHHHH
Q psy586 38 LKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQ-EV-TQHLFFLQVKQA 88 (472)
Q Consensus 38 L~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~-~~-t~~LlylQvk~~ 88 (472)
+++-+.+..+-+ .-+.+++-|..+.|+......-.+ ++ ..+-||.|+...
T Consensus 148 ~~~~~~~~ah~i-gypvv~~g~~~~~y~~~~~~~r~q~~v~~~n~~~~~~l~~ 199 (697)
T PF09726_consen 148 LDLCRPFAAHCI-GYPVVTLGFGFKSYVSYRMRQRKQREVQKENEFYMQLLQQ 199 (697)
T ss_pred hhhcccHHHhhc-CCceeEeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443321 235567777777777644321111 22 234556655443
No 163
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=46.27 E-value=2.2e+02 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=16.6
Q ss_pred HHHHhhhhhhhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q psy586 381 QQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLV 423 (472)
Q Consensus 381 i~~~s~~rk~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (472)
|.++=-.|+....... ..+++.+++++....+.+.++.
T Consensus 27 i~~~l~~R~~~I~~~l-----~~Ae~~~~eA~~~~~~~e~~L~ 64 (159)
T PRK09173 27 IARSLDARADRIKNEL-----AEARRLREEAQQLLAEYQRKRK 64 (159)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444333 3333344444444444444333
No 164
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=46.25 E-value=79 Score=29.58 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccc-eeecce------eeEEEe
Q psy586 166 AEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRH-ISFDDK------KFIIKP 238 (472)
Q Consensus 166 A~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~-~sf~~k------kF~I~~ 238 (472)
-..+||..+|.+.- --| ...+.+++++|++.||.+-+.++.. .+..+|.-+|.+ ++|.+. -|.++.
T Consensus 87 ~lI~~ID~aQq~Gk---LP~---v~~~eevil~VSKyGiKvt~~d~~~-VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~ 159 (200)
T PF10480_consen 87 ELINYIDSAQQDGK---LPF---VPSDEEVILSVSKYGIKVTDNDQRD-VLHRHPLHEIVRMVCYDDGLGAGKNLLALKV 159 (200)
T ss_pred HHHHHHHHHhhcCc---CCC---CCCCCeEEEEEeeccEEEeecCCcc-eeeeeeeeeEEEEEEEecCcCCcceEEEEEc
Confidence 45689999987433 222 1233678999999999999877664 578888888874 455433 244555
Q ss_pred cCCCCCce
Q psy586 239 VDKSSPNF 246 (472)
Q Consensus 239 ~d~~~~~~ 246 (472)
.+..+..+
T Consensus 160 ~~~~~e~y 167 (200)
T PF10480_consen 160 GDERQEEY 167 (200)
T ss_pred cCCCcceE
Confidence 55444443
No 165
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=45.98 E-value=25 Score=30.77 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=27.9
Q ss_pred cCCCceEEEecCCceEEEecCCccccceeeecccccceeec
Q psy586 190 KKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD 230 (472)
Q Consensus 190 ~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~ 230 (472)
++..++.|-|+..||.+++..++. .+..++ |.++||.
T Consensus 38 ~k~~~V~L~IS~~Gv~v~d~~tk~-~i~~~~---i~~ISf~ 74 (127)
T cd01274 38 ETIPRVTLDLTCNGVKFIDETFKT-LIDGHG---IYNIRCV 74 (127)
T ss_pred CCCCEEEEEEeCCeEEEEECCCCe-EEEEee---eeEEEEE
Confidence 456789999999999999998874 456654 5555553
No 166
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=45.48 E-value=1.2e+02 Score=28.38 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=0.0
Q ss_pred hccccC
Q psy586 345 DLDMYG 350 (472)
Q Consensus 345 ~L~~YG 350 (472)
-|..||
T Consensus 32 ~L~~yG 37 (190)
T PF06936_consen 32 FLSSYG 37 (190)
T ss_dssp ------
T ss_pred HHHHhC
Confidence 344555
No 167
>KOG2002|consensus
Probab=45.35 E-value=2.6e+02 Score=32.60 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=10.2
Q ss_pred cCHHHHHHHHHHHHH
Q psy586 96 CPPEASVLLASYAVQ 110 (472)
Q Consensus 96 c~~e~av~LAAl~~Q 110 (472)
+|+|..=-+|||.+-
T Consensus 450 ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFR 464 (1018)
T ss_pred CCHHHHHhHHHHHHH
Confidence 677777777776654
No 168
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.54 E-value=2.9e+02 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=16.4
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHH
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYA 108 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~ 108 (472)
|...-...|-+|.+||.......+|-.-
T Consensus 13 L~~~Yv~aIn~G~vP~iesa~~~~~e~e 40 (297)
T PF02841_consen 13 LVKSYVDAINSGSVPCIESAWQAVAEAE 40 (297)
T ss_dssp HHHHHHHHHHTTS--BHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 3444567788899999876555554333
No 169
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=43.55 E-value=2.2e+02 Score=27.77 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q psy586 446 AAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (472)
..++.+....+.+..+++++
T Consensus 119 i~~~a~~~~~~~l~~~e~el 138 (255)
T TIGR03825 119 IVEEAKDDYEEKIESAQPLI 138 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445445555555555444
No 170
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=42.88 E-value=49 Score=25.50 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .-|.|.. . -|+.+.++.+.+++.+..+.+..|
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G---~--~L~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 19 EKESVSTLKKLVSEHLNVPEEQ-QRLLFKG---K--ALADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCcHHHHHHHHHHHHCCCHHH-eEEEECC---E--ECCCCCCHHHCCCCCCCEEEEEEc
Confidence 6789999999999999997544 5555542 2 266778899888887777766655
No 171
>KOG2891|consensus
Probab=42.71 E-value=2.3e+02 Score=28.09 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=6.1
Q ss_pred HHHHHhHHHHH
Q psy586 455 EQRLVQYQEEI 465 (472)
Q Consensus 455 ~~~~~~~~~~~ 465 (472)
++++.+++|.+
T Consensus 406 ~qkikeleek~ 416 (445)
T KOG2891|consen 406 EQKIKELEEKI 416 (445)
T ss_pred HHHHHHHHHHH
Confidence 44455666655
No 172
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.70 E-value=1.3e+02 Score=32.60 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.0
Q ss_pred cCCChHHHHH
Q psy586 159 RGMSRDEAEM 168 (472)
Q Consensus 159 ~g~s~~eA~~ 168 (472)
=|-++.+|..
T Consensus 96 ygY~~~~a~~ 105 (489)
T PF05262_consen 96 YGYSDEDAET 105 (489)
T ss_pred cCCChhhHHH
Confidence 4555555544
No 173
>KOG2891|consensus
Probab=41.35 E-value=2.5e+02 Score=27.83 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=4.6
Q ss_pred cCCCceEEee
Q psy586 178 DMYGVNYFPI 187 (472)
Q Consensus 178 ~~yG~~~F~v 187 (472)
....+.+|.+
T Consensus 155 a~ip~kwf~l 164 (445)
T KOG2891|consen 155 AGIPCKWFAL 164 (445)
T ss_pred cCCcceeeee
Confidence 3344455544
No 174
>PRK11637 AmiB activator; Provisional
Probab=41.31 E-value=2.5e+02 Score=29.63 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy586 414 EKCAMEQRLVQYQEEIRLANEAL 436 (472)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~ 436 (472)
+...+++++..+++++...+.++
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 175
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.28 E-value=3.5e+02 Score=26.07 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 417 AMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
..|.++.+++++++.+...|+.....-. ++......++.++..+.+..
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~~-~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASEE-KASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 3666778888888888777776555333 33333466777777776665
No 176
>KOG0742|consensus
Probab=40.23 E-value=3.6e+02 Score=28.77 Aligned_cols=11 Identities=18% Similarity=-0.016 Sum_probs=4.8
Q ss_pred HHHHhhhhhhh
Q psy586 381 QQMKSQAKEEK 391 (472)
Q Consensus 381 i~~~s~~rk~f 391 (472)
|-+-.++++.|
T Consensus 88 in~s~~aK~vf 98 (630)
T KOG0742|consen 88 INHSPYAKDVF 98 (630)
T ss_pred hccCccHHHHH
Confidence 33334444445
No 177
>KOG2689|consensus
Probab=40.21 E-value=2.1e+02 Score=28.42 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHhhhhhhhhhhhh-HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 379 EIQQMKSQAKEEKSRRQI-ERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKV 441 (472)
Q Consensus 379 ~~i~~~s~~rk~f~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (472)
..|..++-..++-.++.+ ++-+..+.+ ..+-..++.++.+++++.-..++..|++.+...+.
T Consensus 79 e~ik~ls~eE~~~~~~~i~ekik~k~~k-~~e~e~~E~~~~~k~~~ks~~~~~~a~~r~q~~e~ 141 (290)
T KOG2689|consen 79 EEIKLLSEEEKKAQTKRILEKIKQKQIK-REELELREALEREKQRRKSGDEMSAAKRRLQDDEM 141 (290)
T ss_pred hhccccChHHHHHHHHHHHHHhcchhHH-HHHHHHHHhhhhHHhhhhcccHHHHHHHHHHHHHH
Confidence 345555555444433333 232222222 22223334444455444444555555555544333
No 178
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.18 E-value=2.7e+02 Score=24.79 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q psy586 446 AAEREKCAMEQRLVQYQEEIRL 467 (472)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (472)
..|.++..+|+++..+......
T Consensus 119 ~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 119 ALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655443
No 179
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=39.98 E-value=1.2e+02 Score=27.65 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHH
Q psy586 439 VKVSEREAAEREKC 452 (472)
Q Consensus 439 ~~~~~~~~~~~~~~ 452 (472)
.++.||+.|++++.
T Consensus 143 kEe~lr~lA~~aR~ 156 (158)
T PF02731_consen 143 KEEKLRELAQRARE 156 (158)
T ss_pred HHHHHHHHHHHHHh
Confidence 34456777777664
No 180
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=39.70 E-value=3.2e+02 Score=29.96 Aligned_cols=25 Identities=24% Similarity=0.655 Sum_probs=14.1
Q ss_pred ceEEEecCCceEEEecCCccccceeeecccc
Q psy586 194 DLWLGVTALGLNIYEKENKLTPKTTFPWSEI 224 (472)
Q Consensus 194 ~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I 224 (472)
.=|+||-+-|-.-. + --.+|-|...
T Consensus 37 ~DWIGiFKVGw~s~----r--dY~Tf~Wa~~ 61 (546)
T PF07888_consen 37 KDWIGIFKVGWSST----R--DYYTFVWAPV 61 (546)
T ss_pred CCeeEEeecCCCch----h--heeeEEeecc
Confidence 34887766554221 1 1477888754
No 181
>KOG0579|consensus
Probab=38.49 E-value=2.4e+02 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy586 406 QLREAAEREKCAMEQRLVQYQEEIRLANEA 435 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (472)
+.|.++.|-+.|-|+.++.+++.+++....
T Consensus 864 rlR~eakRir~EQekd~~~Fqe~LK~~kKe 893 (1187)
T KOG0579|consen 864 RLRNEAKRIRIEQEKDMRAFQERLKQEKKE 893 (1187)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444555555555566666665554433
No 182
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.15 E-value=3.1e+02 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q psy586 447 AEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~ 465 (472)
++.+..+.+.++.+++.+.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l 262 (423)
T TIGR01843 244 VLEELTEAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 183
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.10 E-value=1.3e+02 Score=23.46 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy586 421 RLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLA 468 (472)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
.++..+..+..|++.|......++..--..+..+..++..++.+....
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444466777777777777776443
No 184
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.06 E-value=1.6e+02 Score=27.96 Aligned_cols=11 Identities=9% Similarity=-0.182 Sum_probs=4.8
Q ss_pred CHHHHHHHhhh
Q psy586 377 TMEIQQMKSQA 387 (472)
Q Consensus 377 ~w~~i~~~s~~ 387 (472)
-|-.-..++..
T Consensus 78 GWV~~~~Ls~~ 88 (206)
T PRK10884 78 AWIPLKQLSTT 88 (206)
T ss_pred EeEEHHHhcCC
Confidence 45444444433
No 185
>KOG0742|consensus
Probab=37.90 E-value=5.1e+02 Score=27.67 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q psy586 442 SEREAAEREKCAME 455 (472)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (472)
.++.+-|++|+|.|
T Consensus 202 aqrr~tE~erae~E 215 (630)
T KOG0742|consen 202 AQRRKTEMERAEAE 215 (630)
T ss_pred HHHHHhHHHHHHHH
Confidence 34455556666666
No 186
>KOG2391|consensus
Probab=37.87 E-value=1.7e+02 Score=29.86 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 425 YQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+++.+++..|+|+.-.. +.+.+++++|+++..++..+
T Consensus 233 eq~slkRt~EeL~~G~~----kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQ----KLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHhhHHHHHhhHH----HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555543332 23344456666666666555
No 187
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.37 E-value=4.3e+02 Score=26.77 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHH
Q psy586 451 KCAMEQRLVQYQEEI 465 (472)
Q Consensus 451 ~~~~~~~~~~~~~~~ 465 (472)
.-.+..++.+++++.
T Consensus 101 ~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 101 YNELQLELIEFQEER 115 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555554
No 188
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=36.77 E-value=62 Score=26.81 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccc-cccch
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAW-LKLDK 42 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~w-L~~~k 42 (472)
.+|+.++++.|...|||.-+..+-|.-+...|...| |++..
T Consensus 34 ~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p~D 75 (105)
T cd01779 34 DSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDPTD 75 (105)
T ss_pred CCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCccc
Confidence 589999999999999999999999998877666667 45543
No 189
>KOG4571|consensus
Probab=36.70 E-value=2.8e+02 Score=27.77 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=8.1
Q ss_pred ecCCCceEEEecCC
Q psy586 189 NKKDTDLWLGVTAL 202 (472)
Q Consensus 189 ~~~~~~~~LgV~~~ 202 (472)
.+.++.-|+.|+..
T Consensus 39 ~k~~~~~~~~~~~~ 52 (294)
T KOG4571|consen 39 AKAATLEWLAVDGL 52 (294)
T ss_pred ccccccccccccCC
Confidence 34556667766544
No 190
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=36.67 E-value=3.1e+02 Score=24.48 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAE 448 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (472)
.-..+++.+.+.++.+.++++++..|+.+-.....+++..++
T Consensus 41 ~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 41 ELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777778888888888887776655554444444444
No 191
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.20 E-value=1.1e+02 Score=26.99 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccceeec
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD 230 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~ 230 (472)
+..++.|-|+..||.+.+..++. ....++ |.++||.
T Consensus 53 k~~~V~L~IS~~GI~v~d~~t~~-~~~~~~---i~~ISfc 88 (142)
T cd01273 53 KLQKVEIRISIDGVIIAEPKTKA-PMHTFP---LGRISFC 88 (142)
T ss_pred cCcEEEEEEECCeEEEEEcCCCc-EEEEcC---cceEEEE
Confidence 34689999999999999998874 455655 5555553
No 192
>KOG2072|consensus
Probab=35.66 E-value=2.7e+02 Score=32.00 Aligned_cols=40 Identities=28% Similarity=0.241 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhHHH
Q psy586 424 QYQEEIRLANEALKCVKV-SEREAAEREKCAMEQRLVQYQE 463 (472)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (472)
...|+.|...+..++-.+ -+++..+.++.++.+++.+++.
T Consensus 603 r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~ 643 (988)
T KOG2072|consen 603 REAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQ 643 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333 1222222336666677776663
No 193
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.33 E-value=3.7e+02 Score=26.69 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy586 425 YQEEIRLANEALKCVKV 441 (472)
Q Consensus 425 ~~~~~~~~~~~~~~~~~ 441 (472)
++++++++..++.....
T Consensus 212 ~~EeL~~~Eke~~e~~~ 228 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKE 228 (269)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445544444443333
No 194
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=34.95 E-value=30 Score=27.61 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=25.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccc-cccchhhhccCccCCC
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAW-LKLDKKVQDQGISNQC 53 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~w-L~~~kkl~~q~~~~~~ 53 (472)
|++|..+|++.|.+.+++... -|.|+ .+.+....- -+.++++.+.+++.++
T Consensus 22 ~~~t~~~L~~kI~~~l~~~~~-~~~L~-~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 22 PSSTLSDLKEKISEQLSIPDS-SQSLS-KDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp TTSBHHHHHHHHHHHS---TT-T---B-SSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred CcccHHHHHHHHHHHcCCCCc-ceEEE-ecCCCCcccccCCcCCHHHcCCCCcc
Confidence 688999999999999999866 46663 333222111 1345666666666554
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.80 E-value=1.9e+02 Score=27.06 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHHhhh
Q psy586 456 QRLVQYQEEIRLANE 470 (472)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (472)
+++.++.+++..|.+
T Consensus 135 ~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544443
No 196
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.56 E-value=2.3e+02 Score=31.68 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q psy586 446 AAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (472)
..+++..+++.++.+.+.++
T Consensus 266 ~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 197
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=33.85 E-value=1.2e+02 Score=24.71 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCC-Ccccccccchhhhcc--CccCCCceeEEEEe
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQ--GISNQCTTPFMFLA 61 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~-~~~~wL~~~kkl~~q--~~~~~~~~~l~fr~ 61 (472)
.+|++|+++.++.+.++......+|.-..+. +..+.+.-...+.+- .|+.+++-.|+|++
T Consensus 22 ~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~f~k 84 (85)
T cd01787 22 RMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLFFRK 84 (85)
T ss_pred CCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEEEec
Confidence 5799999999999999999988999766443 223444444444332 24445555777764
No 198
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=33.75 E-value=3.1e+02 Score=26.37 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-HHhHH---HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy586 412 EREKCAMEQRLVQYQEEIRLANEAL-KCVKV---SEREAAEREKCAMEQRLVQYQEEIR 466 (472)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (472)
+.++..+++++...++++++....- -+... +|....++-+..-++.|..|+..+.
T Consensus 137 ~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~ 195 (221)
T PF10376_consen 137 EEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMS 195 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444442222 12222 4444444444444555555555443
No 199
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=33.74 E-value=72 Score=24.60 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=26.9
Q ss_pred EEecCCceEEEecCCccccceeeecccccceeecceeeE
Q psy586 197 LGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFI 235 (472)
Q Consensus 197 LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~ 235 (472)
+-++..||.+-+.-. ...+||++|..+.+......
T Consensus 4 v~v~~~Gl~vr~~~r----t~~vpW~~I~~v~~~~~~~~ 38 (73)
T PF10756_consen 4 VEVDPDGLRVRNLFR----TRRVPWSEIAGVRFRRGRRW 38 (73)
T ss_pred EEEcCCcEEEEcCce----eEEEChHHeEEEEccCCceE
Confidence 567899998876532 47899999999998866553
No 200
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=33.25 E-value=98 Score=23.10 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=40.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~ 61 (472)
|++|+.+|=..|+...|++... .=|.|- |. -|+.+.++.+.+++.+..+.+.+|.
T Consensus 14 ~~~tV~~lK~~i~~~~~~~~~~-~~L~~~---G~--~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 14 PDDTVADLKQKIAEETGIPPEQ-QRLIYN---GK--ELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSBHHHHHHHHHHHHTSTGGG-EEEEET---TE--EESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCHHHhhhhccccccccccc-ceeeee---ee--cccCcCcHHHcCCCCCCEEEEEEec
Confidence 6789999999999999976443 334442 32 3678889999888877766666654
No 201
>PF14470 bPH_3: Bacterial PH domain
Probab=32.43 E-value=1.7e+02 Score=23.15 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCceEEEecCCceEEEecCC-ccccceeeecccccceeecc----eeeEEEe
Q psy586 192 DTDLWLGVTALGLNIYEKEN-KLTPKTTFPWSEIRHISFDD----KKFIIKP 238 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~-k~~p~~~f~ws~I~~~sf~~----kkF~I~~ 238 (472)
..+-++.++.+-|.++.... .......+||++|.++++.. .++.|..
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~ 72 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET 72 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE
Confidence 45678888999999987651 11346899999999999996 4455554
No 202
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.61 E-value=1.7e+02 Score=23.81 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKC--VKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|+++.+....+...+..|.. .-...|...|+|..++..+|..++++.
T Consensus 10 lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL 59 (85)
T PF15188_consen 10 LEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKEL 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHH
Confidence 455566666666666666633 223357778888888877777777766
No 203
>KOG1265|consensus
Probab=30.78 E-value=3.5e+02 Score=31.42 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=5.0
Q ss_pred HHHHHHhCCC
Q psy586 107 YAVQAKYGDY 116 (472)
Q Consensus 107 l~~Qa~~Gd~ 116 (472)
+++|..+|-|
T Consensus 658 laMQlN~g~F 667 (1189)
T KOG1265|consen 658 LAMQLNMGMF 667 (1189)
T ss_pred HHHHhhhhhe
Confidence 3455555544
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.94 E-value=8.8e+02 Score=27.68 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=11.6
Q ss_pred CCCHHHHHHHhhhhhhh
Q psy586 375 PDTMEIQQMKSQAKEEK 391 (472)
Q Consensus 375 ~f~w~~i~~~s~~rk~f 391 (472)
+-+++..+-++..-+.|
T Consensus 532 p~~~E~l~lL~~a~~vl 548 (717)
T PF10168_consen 532 PSPQECLELLSQATKVL 548 (717)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34777777777776666
No 205
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=29.89 E-value=92 Score=23.60 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~f 59 (472)
|+.|+.+|-..|+...|++... .-|.|- |. -|+.+..+.+.+++.++.+.+..
T Consensus 17 ~~~tV~~lK~~i~~~~gi~~~~-q~Li~~---G~--~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 17 PDTDIKQLKEVVAKRQGVPPDQ-LRVIFA---GK--ELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CCChHHHHHHHHHHHHCCCHHH-eEEEEC---Ce--ECCCCCcHHHcCCCCCCEEEEEe
Confidence 6789999999999999986543 455443 22 26777888888777777665543
No 206
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.70 E-value=3.5e+02 Score=32.76 Aligned_cols=17 Identities=0% Similarity=0.040 Sum_probs=7.5
Q ss_pred HHHHHHHHHhccccccC
Q psy586 81 FFLQVKQAILSMDIYCP 97 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~ 97 (472)
-+..+...+....+.|+
T Consensus 122 ~~~e~~r~~~~~gv~~S 138 (1201)
T PF12128_consen 122 SMWELIRELRRKGVQVS 138 (1201)
T ss_pred cHHHHHHHHHhCCCeee
Confidence 33444444444444444
No 207
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.69 E-value=5.4e+02 Score=25.11 Aligned_cols=73 Identities=26% Similarity=0.277 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhhhhC
Q psy586 398 RNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAA---EREKCAMEQRLVQYQEEIRLANEAL 472 (472)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (472)
++.+-+..+.-...+-+...++.+..+++.+++.+++.+....+ .+.+ +++...+...+...++....++++|
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~--kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE--KLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>KOG0288|consensus
Probab=29.58 E-value=5.5e+02 Score=27.14 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSER 444 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (472)
.|-.++.|++|.++-|+++-+...+..
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~ 79 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEK 79 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888777755443333
No 209
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=29.26 E-value=1e+02 Score=25.72 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccch
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDK 42 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~k 42 (472)
++||+.||+..+.++..|.+...|-|... .++...-|.+..
T Consensus 21 l~tTv~eli~~L~rK~~l~~~~ny~l~l~-~~~l~RvL~p~E 61 (97)
T cd01775 21 LNTTVSELIPQLAKKFYLPSGGNYQLSLK-KHDLSRVLRPTE 61 (97)
T ss_pred CcCcHHHHHHHHHHhhcCCCCCCeEEEEE-ECCeeeecCCcC
Confidence 57999999999999999988777877655 344444565543
No 210
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=29.06 E-value=2.8e+02 Score=30.05 Aligned_cols=8 Identities=25% Similarity=0.194 Sum_probs=3.1
Q ss_pred cchhhhhh
Q psy586 267 YKPGMLAS 274 (472)
Q Consensus 267 ~~~~~Las 274 (472)
..|.+||-
T Consensus 101 ~~a~~lA~ 108 (489)
T PF05262_consen 101 EDAETLAT 108 (489)
T ss_pred hhHHHHHH
Confidence 33333333
No 211
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=29.04 E-value=1.1e+02 Score=23.72 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCcc
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFI 35 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~ 35 (472)
.+|-.+|.+.|+.++++.. .-|.+.|.|.+|..
T Consensus 20 ~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~ 52 (81)
T cd05992 20 SISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDL 52 (81)
T ss_pred CCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCE
Confidence 5778899999999999876 77899999887743
No 212
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=28.96 E-value=94 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCc
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGF 34 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~ 34 (472)
+++-.+|...|.+.++|. -|.|.|.|.+++
T Consensus 21 ~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e 50 (81)
T cd06396 21 NTTWASVEAMVKVSFGLN---DIQIKYVDEENE 50 (81)
T ss_pred CCCHHHHHHHHHHHhCCC---cceeEEEcCCCC
Confidence 568899999999999999 899999987775
No 213
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.90 E-value=4.2e+02 Score=23.67 Aligned_cols=30 Identities=30% Similarity=0.129 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy586 417 AMEQRLVQYQEEIRLANEALKCVKVSEREA 446 (472)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (472)
.....+..++++++....+|..-.+.+++.
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666655555544444433
No 214
>KOG4722|consensus
Probab=28.83 E-value=4.1e+02 Score=28.01 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy586 421 RLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLA 468 (472)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
.+-+-+++.|..+++|..... ++..++-.-+.-.|-.++++=++-|
T Consensus 273 eLleReedVRk~kE~L~dqkR--qllE~kllhAe~kRd~ni~aiikkA 318 (672)
T KOG4722|consen 273 ELLEREEDVRKKKEALKDQKR--QLLEAKLLHAEDKRDKNIMAIIKKA 318 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhcchhhHHHHHHHh
Confidence 344556677777777765555 3333444444444444454444443
No 215
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=28.46 E-value=1.5e+02 Score=22.49 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-+.++...|++... .-|.|. | ..|+.++++.+..+..+..+.+..+
T Consensus 19 ~~~tv~~lK~~i~~~~g~~~~~-qrL~~~---g--~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 19 PTDKVERIKERVEEKEGIPPQQ-QRLIYS---G--KQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCCHHHHHHHHhHhhCCChhh-EEEEEC---C--eEccCCCCHHHcCCCCCCEEEEEEE
Confidence 6789999999999999986543 444443 2 2466778888887777766655554
No 216
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=28.41 E-value=5e+02 Score=24.36 Aligned_cols=6 Identities=50% Similarity=0.778 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy586 424 QYQEEI 429 (472)
Q Consensus 424 ~~~~~~ 429 (472)
.|||+.
T Consensus 91 RmQEE~ 96 (190)
T PF06936_consen 91 RMQEEL 96 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 217
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=28.26 E-value=1.2e+02 Score=23.12 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=37.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~f 59 (472)
|++|+.+|-..|+...|++ ..-+-|.|. |. -|+.++++.+.+++.++.+.+.+
T Consensus 18 ~~~TV~~lK~~I~~~~~i~-~~~~~Li~~---Gk--~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 18 EDASVKDFKEAVSKKFKAN-QEQLVLIFA---GK--ILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CCChHHHHHHHHHHHhCCC-HHHEEEEEC---Ce--EcCCCCcHHHcCCCCCCEEEEEE
Confidence 6789999999999999974 344555553 22 25667788888877777666554
No 218
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=28.17 E-value=1.1e+02 Score=23.67 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHhCCCccCceeEEEEcCCCc
Q psy586 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGF 34 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~ 34 (472)
.+|=.+|.+.|+..+++.. ..|.|.|.|.+|.
T Consensus 20 ~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd 51 (81)
T smart00666 20 DISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGD 51 (81)
T ss_pred CCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCC
Confidence 5677899999999999876 5699999987765
No 219
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.11 E-value=4.5e+02 Score=23.70 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 432 ANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
-+++|+..++.++...+..+.+.+.+|.+++-..
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ 85 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDS 85 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888988999899999999999999988877655
No 220
>KOG2072|consensus
Probab=27.13 E-value=9.6e+02 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy586 406 QLREAAEREKCAMEQRLVQYQEEIRLANEAL 436 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (472)
+..++.++++.++++++...+..+.--..|+
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3566677777778777776665554444443
No 221
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=27.12 E-value=80 Score=28.15 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred eecCCCceEEEecCCceEEEecCCccccceeeeccc
Q psy586 188 SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSE 223 (472)
Q Consensus 188 k~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~ 223 (472)
.+.+...+.|-|+..||.+++..++. ....|.|.+
T Consensus 38 ~~~Kk~kV~l~VS~~Gv~v~d~k~~~-~~~~~~~~~ 72 (140)
T cd01270 38 QNIKKRKVTIHVSVDGVKVVLKKKKR-KKKNWTWDE 72 (140)
T ss_pred hCCCceeEEEEEecCcEEEEeccccc-ccccccccC
Confidence 34445679999999999999865542 233455543
No 222
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=26.76 E-value=1.2e+02 Score=25.71 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHHHhCC----CccCceeEEEEcCCCcccccc
Q psy586 1 WRATGRDLFDLVCRTVGL----RETWYFGLQYEDNKGFIAWLK 39 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL----~e~~~FGL~~~~~~~~~~wL~ 39 (472)
+++|+.|+++.+.++..+ -...-|+|+..-.+|..+=|.
T Consensus 44 S~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~ 86 (112)
T cd01782 44 STATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLL 86 (112)
T ss_pred cCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcC
Confidence 468999999999999883 344589999887777644343
No 223
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=26.35 E-value=1.5e+02 Score=22.72 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=39.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|+.|+.+|-.+|....|++... +-|.|. |. -|+.++++.+.+++.+..+.+.++
T Consensus 17 ~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---G~--~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 17 LTQTVATLKQQVSQRERVQADQ-FWLSFE---GR--PMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CcChHHHHHHHHHHHhCCCHHH-eEEEEC---CE--ECCCCCCHHHcCCCCCCEEEEEEE
Confidence 6789999999999999985433 455553 22 256678888888887777766665
No 224
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.13 E-value=1.6e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy586 416 CAMEQRLVQYQEEIRLANEALKC 438 (472)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~ 438 (472)
+-.|+|+.++|..+..++.++..
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555533
No 225
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.93 E-value=4.5e+02 Score=24.36 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=4.1
Q ss_pred eeeeEE
Q psy586 358 ILDLCI 363 (472)
Q Consensus 358 ~~gi~i 363 (472)
+-|||=
T Consensus 95 nDGICD 100 (176)
T PF12999_consen 95 NDGICD 100 (176)
T ss_pred cCCcCc
Confidence 557777
No 226
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=25.74 E-value=8.9e+02 Score=26.89 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=42.1
Q ss_pred CHHHHHHHhhhhhhhhhhhh-HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy586 377 TMEIQQMKSQAKEEKSRRQI-ERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAME 455 (472)
Q Consensus 377 ~w~~i~~~s~~rk~f~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (472)
+|.-.....+.---|.+-.. .|.+.++.+.. ...+.+.++|.+..+=-.++.++|.+|...+. +++.-|
T Consensus 296 ~~~~~~~~~l~~~~~l~~~~~~Rr~~~~~r~~--~~~~a~~eLE~rV~eRTadL~~~n~~l~~EIa--------er~~ae 365 (603)
T COG4191 296 TARLAAILTLALLALLLALWLRRRRRARLRLA--ELQEARAELERRVEERTADLTRANARLQAEIA--------EREQAE 365 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHH
Confidence 45555555566555554444 22222222211 23334445555555544556666766643333 224556
Q ss_pred HHHHhHHHHHHHhh
Q psy586 456 QRLVQYQEEIRLAN 469 (472)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (472)
..|++.|+|.-+||
T Consensus 366 ~~LR~~QdeLvQA~ 379 (603)
T COG4191 366 AALRRAQDELVQAG 379 (603)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777775554
No 227
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=25.64 E-value=5.3e+02 Score=25.50 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy586 421 RLVQYQEEIRLANEA 435 (472)
Q Consensus 421 ~~~~~~~~~~~~~~~ 435 (472)
+..+++.++...+..
T Consensus 176 ~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 176 EISNLTNELSNLRND 190 (264)
T ss_pred HHHHhhhhHHHhhch
Confidence 344555555555443
No 228
>KOG2505|consensus
Probab=25.38 E-value=2.3e+02 Score=30.63 Aligned_cols=29 Identities=34% Similarity=0.396 Sum_probs=12.3
Q ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHHHHHH
Q psy586 407 LREAAEREK--CAMEQRLVQYQEEIRLANEA 435 (472)
Q Consensus 407 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 435 (472)
.++++++++ .+.++....++.++|.|.+.
T Consensus 506 ~~eq~ekkkek~anqka~kk~kkelrkaeek 536 (591)
T KOG2505|consen 506 EREQAEKKKEKKANQKAKKKLKKELRKAEEK 536 (591)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444443 22333333444555554443
No 229
>KOG3231|consensus
Probab=25.29 E-value=3.1e+02 Score=25.15 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=24.1
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy586 392 SRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLA 432 (472)
Q Consensus 392 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (472)
.++..+|..-..=++..+.+||.+..+|++-+++|-|++..
T Consensus 8 tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~ 48 (208)
T KOG3231|consen 8 TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKM 48 (208)
T ss_pred CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444442222223455667777777777777777777653
No 230
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.21 E-value=7e+02 Score=25.23 Aligned_cols=11 Identities=0% Similarity=-0.043 Sum_probs=4.0
Q ss_pred HHHHHHHHhHH
Q psy586 452 CAMEQRLVQYQ 462 (472)
Q Consensus 452 ~~~~~~~~~~~ 462 (472)
..++.++...+
T Consensus 116 ~sl~~q~~~~~ 126 (314)
T PF04111_consen 116 DSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 231
>KOG2962|consensus
Probab=24.95 E-value=6.5e+02 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=14.6
Q ss_pred hhhhhhhhhHHhhhHHHHHHHHHHHH
Q psy586 388 KEEKSRRQIERNKLAREKQLREAAER 413 (472)
Q Consensus 388 rk~f~i~~~~~~~~~~~~~~~~~~~~ 413 (472)
|++|..-..||-|+--+....+..|+
T Consensus 180 RrN~E~ME~EkTKlLiA~ekQkVvEK 205 (322)
T KOG2962|consen 180 RRNFELMEAEKTKLLIAAEKQKVVEK 205 (322)
T ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45577777777777444433344443
No 232
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.58 E-value=3.6e+02 Score=22.63 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=2.7
Q ss_pred hhhhhhH
Q psy586 391 KSRRQIE 397 (472)
Q Consensus 391 f~i~~~~ 397 (472)
.+|+..|
T Consensus 64 ~Y~r~~E 70 (100)
T PF04568_consen 64 QYFRKKE 70 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 233
>KOG4364|consensus
Probab=24.52 E-value=7.2e+02 Score=27.98 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.4
Q ss_pred chHHHh
Q psy586 133 PQRVID 138 (472)
Q Consensus 133 P~~v~~ 138 (472)
|+.|+.
T Consensus 13 ~k~v~~ 18 (811)
T KOG4364|consen 13 RKTVIE 18 (811)
T ss_pred hHhhhc
Confidence 444433
No 234
>smart00455 RBD Raf-like Ras-binding domain.
Probab=24.43 E-value=1.1e+02 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYED 30 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~ 30 (472)
|..|.+|++..+|++-||. ...-.++..+
T Consensus 18 pg~tl~e~L~~~~~kr~l~-~~~~~v~~~g 46 (70)
T smart00455 18 PGKTVRDALAKALKKRGLN-PECCVVRLRG 46 (70)
T ss_pred CCCCHHHHHHHHHHHcCCC-HHHEEEEEcC
Confidence 7789999999999999994 4445555543
No 235
>KOG2264|consensus
Probab=23.90 E-value=4.4e+02 Score=29.04 Aligned_cols=49 Identities=22% Similarity=0.143 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 417 AMEQRLVQYQEE---IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 417 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
|+|.+..+++.+ ++.-.|+|++.+.+.+.+.++-|.+.|+--.+++|-.
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444 4445577777777777777777777776665555433
No 236
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.71 E-value=1.4e+02 Score=24.24 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGF 34 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~ 34 (472)
|.++-.||.+.|.+++|+. ..|.+.|.|. |.
T Consensus 20 ~~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD 50 (86)
T cd06408 20 PDTGFADFEDKIRDKFGFK--RRLKIKMKDD-GD 50 (86)
T ss_pred CCCCHHHHHHHHHHHhCCC--CceEEEEEcC-CC
Confidence 5677899999999999996 5899999987 53
No 237
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=23.34 E-value=1.4e+02 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHHhCCCc-cCceeEEEEcCCCcc
Q psy586 1 WRATGRDLFDLVCRTVGLRE-TWYFGLQYEDNKGFI 35 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e-~~~FGL~~~~~~~~~ 35 (472)
+.+|+.|+++.+.++..+.. ..-|+|+....+|+.
T Consensus 21 S~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge~ 56 (87)
T cd01784 21 STMTTPQVLKLLLNKFKIENSAEEFALYIVHTSGEK 56 (87)
T ss_pred cCCCHHHHHHHHHHhccccCCHHHeEEEEEeeCCCE
Confidence 46899999999999999864 478999988777753
No 238
>KOG0982|consensus
Probab=23.15 E-value=7.6e+02 Score=26.23 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q psy586 449 REKCAMEQRLVQYQEEIRLA 468 (472)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~ 468 (472)
+.+..|..+|+++|++....
T Consensus 353 ~l~~rm~d~Lrrfq~ekeat 372 (502)
T KOG0982|consen 353 KLRVRMNDILRRFQEEKEAT 372 (502)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 34566777788887776443
No 239
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.06 E-value=4.4e+02 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHH
Q psy586 448 EREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (472)
..++..++..|.+++...
T Consensus 122 ~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555666665543
No 240
>PLN02316 synthase/transferase
Probab=22.77 E-value=3.1e+02 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred hHHHHHHHH-HHHhcccCCCceEEee--eecCCCceEEEecCC
Q psy586 163 RDEAEMEYL-KIAQDLDMYGVNYFPI--SNKKDTDLWLGVTAL 202 (472)
Q Consensus 163 ~~eA~~~yL-kiaq~l~~yG~~~F~v--k~~~~~~~~LgV~~~ 202 (472)
.+++...-| .+|..--.-|..+|.. .-+-|.++-|=.|..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~a~~~~~v~~n~~ 163 (1036)
T PLN02316 121 RENLRKREIEELAEENFSRGNKLFVYPQVVKPDSDIEVYLNRS 163 (1036)
T ss_pred HHHHHHHHHHHHHhhccCCCCeEEeccccccCCCeeEEEEcCC
Confidence 344444433 3444444567778765 333444444444433
No 241
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=22.61 E-value=1.8e+02 Score=22.77 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=38.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|+.|+.+|-++|....|++-. -.-|.|.+ .-|+.+.++.+.++..++.+.+..|
T Consensus 21 ~~~TV~~lK~~i~~~~gi~~~-~QrLi~~G-----k~L~D~~tL~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 21 RLTKVEELREKIQELFNVEPE-CQRLFYRG-----KQMEDGHTLFDYNVGLNDIIQLLVR 74 (78)
T ss_pred CcCcHHHHHHHHHHHhCCCHH-HeEEEeCC-----EECCCCCCHHHcCCCCCCEEEEEEe
Confidence 578999999999999998543 35666642 2367788888888877766555443
No 242
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.50 E-value=4.1e+02 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHHHH
Q psy586 452 CAMEQRLVQYQEEI 465 (472)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (472)
.++.++|..++..+
T Consensus 121 eeL~~kL~~~~~~l 134 (194)
T PF15619_consen 121 EELQRKLSQLEQKL 134 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 243
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=22.37 E-value=2.5e+02 Score=21.91 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-++|....|++... +-|.+.. +|. -|+.++.+.+.++..+..+.+..+
T Consensus 21 ~~~TV~~lK~~I~~~~~i~~~~-qrL~~~~-~G~--~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 21 DSMTVSELKQQIAQKIGVPAFQ-QRLAHLD-SRE--VLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCcHHHHHHHHHHHhCCCHHH-EEEEecc-CCC--CCCCCCCHHHcCCCCCCEEEEEEE
Confidence 6789999999999999985332 3343222 222 366677888888877776655543
No 244
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.32 E-value=1.9e+02 Score=23.45 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhh
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQ 45 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~ 45 (472)
|++|-.+|.+.|.+...+.+..-|.+.|.|..|...=+..+..+.
T Consensus 18 ~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~ 62 (83)
T cd06404 18 PSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELE 62 (83)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHH
Confidence 467888999999999999999999999999888765454444443
No 245
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=22.26 E-value=3.7e+02 Score=23.69 Aligned_cols=9 Identities=11% Similarity=-0.126 Sum_probs=4.2
Q ss_pred hhhhhhhhh
Q psy586 388 KEEKSRRQI 396 (472)
Q Consensus 388 rk~f~i~~~ 396 (472)
|+.|+-.-+
T Consensus 20 R~eyLTGFh 28 (137)
T PF09805_consen 20 RREYLTGFH 28 (137)
T ss_pred HHHHHHHHH
Confidence 444544444
No 246
>KOG2507|consensus
Probab=22.23 E-value=1.7e+02 Score=30.84 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQRLVQYQEE----IRLANEALKCVKVSER 444 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 444 (472)
....++++-+++.++++.+.-++.+-=+|. .+.-++++++..++.+
T Consensus 207 leqkr~Ek~kee~~hekeee~~rr~agkE~~~~~a~~~ee~tkrm~eqrk 256 (506)
T KOG2507|consen 207 LEQKRVEKTKEEVEHEKEEEPLRRQAGKEPIRPTAPGTEENTKRMREQRK 256 (506)
T ss_pred ccccchhhhHHHHHHHhhhhhHhhhhcccccccccccchHHHHHHHHHHH
Confidence 333566666666666655443333222221 2233555655555433
No 247
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.15 E-value=1.1e+02 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.0
Q ss_pred cCCCceEEEecCCceEEEecCCccccc--eeeecccccceeec
Q psy586 190 KKDTDLWLGVTALGLNIYEKENKLTPK--TTFPWSEIRHISFD 230 (472)
Q Consensus 190 ~~~~~~~LgV~~~GI~i~~~~~k~~p~--~~f~ws~I~~~sf~ 230 (472)
+....+.|-|+.+||.+.++.++.... ..-.+..|.|+||.
T Consensus 42 ~~~~~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nISFC 84 (148)
T cd01212 42 PTPQTCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNISFC 84 (148)
T ss_pred CCCcEEEEEEecCcEEEEecCCCcccccchhhccccccceEEE
Confidence 345679999999999999987763111 11113357778875
No 248
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=21.96 E-value=2.5e+02 Score=22.43 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|...|++.+|...|++.. -+-|.|. |. -|+.+.++.+.++..++...+.++
T Consensus 30 ~~~~l~~l~~~y~~~~gi~~~-~~rf~f~---G~--~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 30 RSTPLKKLMEAYCQRQGLSMN-SVRFLFD---GQ--RIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCHHHHHHHHHHHHhCCCcc-ceEEEEC---Ce--ECCCCCCHHHcCCCCCCEEEEEEe
Confidence 678999999999999999643 3444443 32 267778888877766665555543
No 249
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=21.85 E-value=2.7e+02 Score=21.00 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCCceEEEecCCceEEEecCCccccc-eeeecccccceeecce----eeEEEecCCC--CCceeeehhh
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPK-TTFPWSEIRHISFDDK----KFIIKPVDKS--SPNFIFFSLK 252 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~-~~f~ws~I~~~sf~~k----kF~I~~~d~~--~~~~vF~t~q 252 (472)
.....|+-+...++.+|.......+. ..++...+. +..... .+.+.+.... ...+.|.+..
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~ 85 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADS 85 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCC
Confidence 34678999999999999877654333 357777766 555541 3344433332 3445555443
No 250
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.76 E-value=1.1e+02 Score=26.61 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=28.6
Q ss_pred cCCCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 190 KKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 190 ~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
.++.++.|-|+..||.+.++.++. .+..+|-..|+-+.
T Consensus 37 ~~~~~v~l~Vs~~~l~l~d~~t~~-~l~~~~i~~Isf~~ 74 (123)
T cd01216 37 EDWKDLNMDLAPSTLSLIDPDNLT-VLHECRVRYLSFWG 74 (123)
T ss_pred ccCeEEEEEEecCcEEEEcCCCCe-EEEEEEeeEEEEEE
Confidence 345679999999999999999874 57788765554333
No 251
>KOG3584|consensus
Probab=21.56 E-value=2.3e+02 Score=28.31 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=23.5
Q ss_pred hhhhhhhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy586 390 EKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCV 439 (472)
Q Consensus 390 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (472)
|..|+++ |||.|-.|=.|+.-|==|- +|.|.+-||.+.+..-|+|+-+
T Consensus 291 KRevRLm-KNREAARECRRKKKEYVKC-LENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 291 KREVRLM-KNREAARECRRKKKEYVKC-LENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHHH-hhHHHHHHHHHhHhHHHHH-HHhHHHHHhcccHHHHHHHHHH
Confidence 3456655 5555333322222222222 6667777666665555555433
No 252
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=21.55 E-value=2.7e+02 Score=21.55 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.||-..+...-+.....-..|... .+|. -|..++++.+.++..+. .++|+
T Consensus 21 ~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~--~L~d~~tL~~~gv~~g~--~lyvK 75 (77)
T cd01801 21 GDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGK--SLKDDDTLVDLGVGAGA--TLYVR 75 (77)
T ss_pred CCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCc--ccCCcccHhhcCCCCCC--EEEEe
Confidence 67899999999999877644444555543 2333 35667778887775544 45554
No 253
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=21.47 E-value=2.1e+02 Score=21.90 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|+.|+.+|-..|...-|++... .-|.|.. . -|+.++++.+.+++.++.+.+.+|
T Consensus 17 ~~~tV~~lK~~i~~~~gip~~~-q~Li~~G---k--~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 17 GQETVSDIKAHVAGLEGIDVED-QVLLLAG---V--PLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CcCcHHHHHHHHHhhhCCCHHH-EEEEECC---e--ECCCCCCHHHcCCCCCCEEEEEEe
Confidence 6889999999999999986543 4555542 1 267778888888877777766655
No 254
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.24 E-value=2.2e+02 Score=26.98 Aligned_cols=8 Identities=50% Similarity=0.746 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy586 425 YQEEIRLA 432 (472)
Q Consensus 425 ~~~~~~~~ 432 (472)
+|++.+.|
T Consensus 84 fq~e~~eA 91 (201)
T COG1422 84 FQKEFREA 91 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 255
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.21 E-value=3.7e+02 Score=20.36 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q psy586 447 AEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~ 465 (472)
+|..-.+++..+..+++++
T Consensus 37 aE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666665
No 256
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=21.11 E-value=5.3e+02 Score=22.08 Aligned_cols=7 Identities=0% Similarity=0.344 Sum_probs=2.7
Q ss_pred HHHhHHH
Q psy586 457 RLVQYQE 463 (472)
Q Consensus 457 ~~~~~~~ 463 (472)
++..++.
T Consensus 80 ki~~ik~ 86 (113)
T TIGR01147 80 KIREIKK 86 (113)
T ss_pred HHHHHHH
Confidence 3334433
No 257
>KOG3784|consensus
Probab=21.03 E-value=32 Score=35.68 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhhhccccCcceeec
Q psy586 332 RDEAEMEYLKIAQDLDMYGVNYFPI 356 (472)
Q Consensus 332 ~~eAe~~yL~~a~~L~~YGv~~~~v 356 (472)
..+.+.+||+.|+.|++||-..|+-
T Consensus 243 ~q~~~~~fL~m~R~l~~Y~~l~f~~ 267 (407)
T KOG3784|consen 243 EEESMKEFLELARTLEGYGYLIFDP 267 (407)
T ss_pred HhhhHHHHHHHHHhhccCCeEecCc
Confidence 3456789999999999999988864
No 258
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=21.01 E-value=1.3e+02 Score=21.57 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=29.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCcc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGIS 50 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~ 50 (472)
|++|+.+|-..|+...|++.. ..-|.|. |. -|+.++++.+.+++
T Consensus 18 ~~~tv~~lk~~i~~~~~~~~~-~~~L~~~---g~--~L~d~~tL~~~~i~ 61 (64)
T smart00213 18 PSDTVSELKEKIAELTGIPVE-QQRLIYK---GK--VLEDDRTLADYNIQ 61 (64)
T ss_pred CCCcHHHHHHHHHHHHCCCHH-HEEEEEC---CE--ECCCCCCHHHcCCc
Confidence 578999999999999998543 3555443 21 15556667666554
No 259
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.79 E-value=8.7e+02 Score=25.76 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy586 415 KCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEE 464 (472)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (472)
...+++.+.+++.++.....+|.+....+ .+.++.=+.++.+|..++.+
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l-~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDL-KKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHhhHHHHHHHHHHHHHH
Confidence 33455555555555555555554444322 12223333444444444433
No 260
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.77 E-value=3.5e+02 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccCCChhH----HHHHHHHHhhhccccCcceeec
Q psy586 317 EDRIKIWYADHRGMSRDE----AEMEYLKIAQDLDMYGVNYFPI 356 (472)
Q Consensus 317 ~~~I~~~h~~~~G~s~~e----Ae~~yL~~a~~L~~YGv~~~~v 356 (472)
.+.+...|-+..||+-.+ |...-|=-+-.=+-||.+|+.+
T Consensus 75 ~esvPr~~L~~agmplPe~~~~~~TRlliK~gNRelyGsDF~~l 118 (289)
T COG4985 75 RESVPRSHLKEAGMPLPEKVQAAATRLLIKVGNRELYGSDFIAL 118 (289)
T ss_pred hhcccHHHHHHcCCCCCCchHHHHHHHHHHhcchhhccchHHHH
Confidence 344445566666666433 3333333334446777777654
No 261
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=20.69 E-value=81 Score=25.07 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHHHhCCCccCce
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYF 24 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~F 24 (472)
|..|+.|+++.+|++-|+..+.+|
T Consensus 18 p~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 18 PGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred CCCCHHHHHHHHHHhcCCChhHhe
Confidence 678999999999999999777644
No 262
>KOG1363|consensus
Probab=20.62 E-value=3.3e+02 Score=29.26 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy586 444 REAAEREKCAMEQRL 458 (472)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (472)
|++.||+.++.|++.
T Consensus 347 r~e~er~~~~ee~e~ 361 (460)
T KOG1363|consen 347 RLEKERKEEEEERET 361 (460)
T ss_pred HHhhhhhhHHHHHHH
Confidence 444444444333333
No 263
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.62 E-value=5e+02 Score=21.59 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy586 403 REKQLREAAEREKCAMEQ 420 (472)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (472)
+||+.+.+++|++.+.|+
T Consensus 49 KEER~K~E~~~q~r~rES 66 (121)
T PF10669_consen 49 KEERSKKEEKRQKRNRES 66 (121)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 445566666666555554
No 264
>KOG1003|consensus
Probab=20.59 E-value=7.3e+02 Score=23.48 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQY 461 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (472)
.|++|.+++++++.....|+.... ..+.+++.....+..+.-+
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~-~ee~~~q~~d~~e~~ik~l 149 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSA-KEEKLEQKEEKYEEELKEL 149 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHH-HHHHHhhhHHHHHHHHHHH
Confidence 566788888887776555544332 2333333333344333333
No 265
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=20.48 E-value=2.1e+02 Score=24.23 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=5.9
Q ss_pred Hhhhhhhhhhhhh
Q psy586 384 KSQAKEEKSRRQI 396 (472)
Q Consensus 384 ~s~~rk~f~i~~~ 396 (472)
++|.+.+.++..+
T Consensus 66 ~~l~~sk~~v~~m 78 (105)
T PF11214_consen 66 SKLNDSKWYVDTM 78 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 266
>PTZ00044 ubiquitin; Provisional
Probab=20.39 E-value=2e+02 Score=21.93 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|+.|+.+|=..|+...|++... .=|.|. |. -|+.+.++.+..+..+..+.+.++
T Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~-q~L~~~---g~--~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 19 PDNTVQQVKMALQEKEGIDVKQ-IRLIYS---GK--QMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCcHHHHHHHHHHHHCCCHHH-eEEEEC---CE--EccCCCcHHHcCCCCCCEEEEEEE
Confidence 6789999999999999986432 444443 21 266677788877777776666655
No 267
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.23 E-value=6.9e+02 Score=30.36 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy586 100 ASVLLASYA 108 (472)
Q Consensus 100 ~av~LAAl~ 108 (472)
....|-+|+
T Consensus 160 ~~~~lr~la 168 (1201)
T PF12128_consen 160 DRKELRALA 168 (1201)
T ss_pred cchHHHHHH
Confidence 334444443
Done!