Query psy586
Match_columns 472
No_of_seqs 329 out of 1404
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 19:53:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 100.0 4.3E-67 1.5E-71 563.6 33.0 357 1-456 22-378 (575)
2 1ef1_A Moesin; membrane, FERM 100.0 1.2E-55 4.2E-60 439.7 31.5 258 1-258 19-276 (294)
3 1h4r_A Merlin; FERM, neurofibr 100.0 9.5E-55 3.2E-59 437.4 30.4 257 1-258 40-296 (314)
4 3qij_A Protein 4.1; cytoskelet 100.0 4.7E-52 1.6E-56 414.4 22.8 244 1-258 36-283 (296)
5 3ivf_A Talin-1; FERM domain, c 100.0 3.2E-45 1.1E-49 376.2 25.2 243 1-252 104-355 (371)
6 4dxa_B KREV interaction trappe 100.0 1.1E-41 3.6E-46 343.6 17.5 247 1-258 26-307 (322)
7 2al6_A Focal adhesion kinase 1 100.0 8.3E-41 2.8E-45 343.7 21.7 264 1-278 30-320 (375)
8 3pvl_A Myosin VIIA isoform 1; 100.0 9.9E-41 3.4E-45 363.7 20.8 245 1-253 282-555 (655)
9 3au4_A Myosin-X; protein-prote 100.0 2.5E-38 8.4E-43 341.1 25.2 244 1-253 235-523 (555)
10 1mix_A Talin; focal adhesion, 100.0 3.1E-38 1.1E-42 298.0 19.2 185 61-252 1-190 (206)
11 2i1j_A Moesin; FERM, coiled-co 100.0 3.7E-38 1.3E-42 338.9 4.9 225 226-472 77-358 (575)
12 4f7g_A Talin-1; alpha-helix bu 100.0 2.2E-35 7.7E-40 282.2 18.0 173 73-252 24-201 (222)
13 4eku_A Protein-tyrosine kinase 100.0 1.1E-32 3.7E-37 283.7 25.1 227 1-230 46-294 (392)
14 2j0j_A Focal adhesion kinase 1 100.0 3.9E-29 1.3E-33 274.4 26.6 227 1-230 30-275 (656)
15 1ef1_A Moesin; membrane, FERM 100.0 6.5E-30 2.2E-34 254.1 2.6 172 226-398 74-259 (294)
16 1h4r_A Merlin; FERM, neurofibr 99.9 2.6E-29 8.7E-34 252.2 1.7 172 226-398 94-279 (314)
17 3qij_A Protein 4.1; cytoskelet 99.9 1.5E-29 5.2E-34 251.9 -3.4 160 226-397 89-261 (296)
18 3ivf_A Talin-1; FERM domain, c 99.9 1.5E-25 5.3E-30 229.8 4.5 165 227-398 162-344 (371)
19 1mix_A Talin; focal adhesion, 99.9 4.8E-25 1.6E-29 207.7 2.9 146 246-398 18-179 (206)
20 4f7g_A Talin-1; alpha-helix bu 99.9 3.5E-25 1.2E-29 211.4 1.2 146 246-398 29-190 (222)
21 4dxa_B KREV interaction trappe 99.8 2.8E-22 9.6E-27 201.7 -3.0 164 227-398 92-290 (322)
22 3pvl_A Myosin VIIA isoform 1; 99.8 1.2E-20 4.3E-25 205.5 -5.9 164 227-397 350-544 (655)
23 2al6_A Focal adhesion kinase 1 99.7 5.8E-19 2E-23 181.1 0.7 157 227-386 92-274 (375)
24 3au4_A Myosin-X; protein-prote 99.7 4.3E-18 1.5E-22 183.2 0.8 167 227-398 301-514 (555)
25 4eku_A Protein-tyrosine kinase 99.4 3.5E-14 1.2E-18 145.9 -1.2 141 245-388 133-295 (392)
26 2j0j_A Focal adhesion kinase 1 99.2 2.5E-12 8.6E-17 140.9 3.2 158 227-387 92-275 (656)
27 2kc2_A Talin-1, F1; FERM, adhe 97.6 8.9E-05 3E-09 63.5 6.3 65 1-67 30-127 (128)
28 3epy_A Acyl-COA-binding domain 97.5 0.00043 1.5E-08 55.6 8.6 84 79-182 5-89 (89)
29 2cb8_A Acyl-COA-binding protei 97.5 0.00045 1.5E-08 55.3 8.6 80 82-181 6-86 (87)
30 1hbk_A ACBP, acyl-COA binding 97.5 0.00091 3.1E-08 53.7 10.1 81 81-181 5-88 (89)
31 1st7_A ACBP, acyl-COA-binding 97.4 0.00056 1.9E-08 54.6 7.8 80 82-181 5-85 (86)
32 2cop_A Acyl-coenzyme A binding 97.2 0.0025 8.6E-08 53.1 9.8 84 81-184 11-95 (109)
33 2lbb_A Acyl COA binding protei 97.1 0.00079 2.7E-08 54.7 6.4 80 82-181 14-95 (96)
34 2cqu_A Peroxisomal D3,D2-enoyl 96.8 0.0054 1.8E-07 51.6 8.5 82 81-182 19-101 (116)
35 2wh5_A Acyl-COA-binding domain 96.7 0.0097 3.3E-07 49.2 9.5 77 81-177 11-91 (106)
36 3fp5_A Acyl-COA binding protei 96.5 0.015 5.1E-07 48.1 9.5 76 82-177 8-87 (106)
37 3flv_A Acyl-COA-binding domain 96.3 0.021 7.2E-07 48.0 9.1 85 78-182 24-113 (119)
38 1st7_A ACBP, acyl-COA-binding 91.5 0.35 1.2E-05 38.2 5.9 51 277-347 31-81 (86)
39 1hbk_A ACBP, acyl-COA binding 91.3 0.34 1.2E-05 38.5 5.7 57 270-347 28-84 (89)
40 2cb8_A Acyl-COA-binding protei 90.6 0.42 1.4E-05 37.9 5.6 53 277-350 32-86 (87)
41 3epy_A Acyl-COA-binding domain 90.3 0.41 1.4E-05 38.1 5.2 61 270-351 28-89 (89)
42 2lbb_A Acyl COA binding protei 89.7 0.65 2.2E-05 37.5 6.0 62 265-347 30-91 (96)
43 2wh5_A Acyl-COA-binding domain 89.0 0.66 2.2E-05 38.1 5.7 71 260-351 26-96 (106)
44 3flv_A Acyl-COA-binding domain 88.2 0.72 2.5E-05 38.7 5.5 71 259-351 41-113 (119)
45 2cop_A Acyl-coenzyme A binding 87.1 0.89 3.1E-05 37.5 5.4 54 277-350 38-92 (109)
46 3fp5_A Acyl-COA binding protei 87.1 0.92 3.1E-05 37.3 5.4 63 262-346 24-87 (106)
47 2cqu_A Peroxisomal D3,D2-enoyl 84.7 1.4 4.9E-05 36.7 5.5 50 278-347 47-96 (116)
48 3u1c_A Tropomyosin alpha-1 cha 83.6 8.8 0.0003 31.0 9.7 57 407-463 38-100 (101)
49 1j0w_A Downstream of tyrosine 82.6 2.5 8.7E-05 34.4 6.0 61 193-253 21-84 (103)
50 1wgr_A Growth factor receptor- 82.2 1.2 4E-05 36.2 3.8 65 1-65 28-95 (100)
51 1f5n_A Interferon-induced guan 79.1 11 0.00036 40.3 11.1 56 402-457 490-545 (592)
52 3u59_A Tropomyosin beta chain; 76.6 17 0.00057 29.2 9.2 56 408-463 39-100 (101)
53 4dci_A Uncharacterized protein 73.9 28 0.00096 30.1 10.3 63 407-469 30-104 (150)
54 2v4h_A NF-kappa-B essential mo 73.4 23 0.00077 28.9 8.9 25 441-465 82-106 (110)
55 1p5t_A DOK1, docking protein 1 70.9 6.9 0.00024 33.0 5.6 60 194-253 26-91 (127)
56 1gk4_A Vimentin; intermediate 70.1 35 0.0012 26.3 9.3 50 416-465 11-60 (84)
57 2dlw_A Docking protein 2, isof 68.5 6 0.0002 32.7 4.6 60 194-254 29-92 (113)
58 2efr_A General control protein 68.4 47 0.0016 28.9 10.6 47 418-465 40-86 (155)
59 2v76_A Docking protein 1; alte 68.3 8.5 0.00029 31.5 5.5 60 194-253 24-89 (107)
60 4dx8_A Integrin beta-1-binding 68.2 18 0.00061 31.3 7.6 74 167-247 42-122 (154)
61 1xr0_B FGFR signalling adaptor 64.6 19 0.00066 30.3 7.1 68 182-252 11-86 (129)
62 2al3_A TUG long isoform; TUG U 61.4 7.5 0.00026 30.7 3.7 47 1-53 28-74 (90)
63 3mq7_A Bone marrow stromal ant 61.2 55 0.0019 26.9 8.9 49 418-466 30-81 (121)
64 3mov_A Lamin-B1; LMNB1, B-type 60.7 39 0.0013 26.8 8.0 48 418-465 24-71 (95)
65 1x8y_A Lamin A/C; structural p 60.4 39 0.0013 26.2 7.8 48 418-465 15-62 (86)
66 4gmv_A RAS-associated and plec 60.2 25 0.00084 33.8 8.0 62 1-62 50-114 (281)
67 4dbb_A Amyloid beta A4 precurs 58.4 46 0.0016 28.9 8.9 47 191-238 51-97 (162)
68 2cs4_A Protein C12ORF2; GTP bi 58.3 17 0.00057 29.0 5.3 59 1-62 26-87 (95)
69 2eqb_B RAB guanine nucleotide 57.4 72 0.0025 25.4 10.6 62 399-467 33-94 (97)
70 1ic2_A Tropomyosin alpha chain 55.0 59 0.002 24.8 8.0 25 415-439 43-67 (81)
71 2fxo_A Myosin heavy chain, car 54.0 95 0.0032 25.8 11.1 16 399-414 27-42 (129)
72 2kup_A Fibroblast growth facto 53.7 33 0.0011 29.5 6.8 67 183-252 19-93 (146)
73 1ndd_A NEDD8, protein (ubiquit 53.7 25 0.00086 25.5 5.6 54 1-60 19-72 (76)
74 3goe_A DNA repair protein RAD6 51.0 29 0.001 26.7 5.3 48 1-53 28-75 (82)
75 3tnu_A Keratin, type I cytoske 49.5 1E+02 0.0034 25.7 9.3 48 418-465 64-111 (131)
76 3tnu_B Keratin, type II cytosk 48.7 1.1E+02 0.0036 25.4 9.3 48 418-465 62-109 (129)
77 2dfs_A Myosin-5A; myosin-V, in 48.3 79 0.0027 36.1 10.9 15 6-20 354-368 (1080)
78 3a9j_A Ubiquitin; protein comp 48.0 33 0.0011 24.8 5.4 54 1-60 19-72 (76)
79 3n3k_B Ubiquitin; hydrolase, p 47.7 30 0.001 25.8 5.3 55 1-61 22-76 (85)
80 2kuq_A Fibroblast growth facto 46.8 51 0.0017 28.5 6.9 57 193-252 34-93 (153)
81 3bas_A Myosin heavy chain, str 45.6 1E+02 0.0036 23.8 9.9 21 444-464 65-85 (89)
82 1ntv_A Disabled homolog 1; bet 44.5 25 0.00085 30.3 4.7 36 191-227 59-94 (152)
83 1i84_S Smooth muscle myosin he 42.9 94 0.0032 35.8 10.6 10 177-186 463-472 (1184)
84 1vd2_A Protein kinase C, IOTA 42.5 31 0.0011 27.1 4.5 35 1-35 24-58 (89)
85 3d8d_A Amyloid beta A4 precurs 41.2 65 0.0022 27.7 6.7 53 192-245 54-111 (148)
86 3hk0_A Growth factor receptor- 38.5 27 0.00091 33.0 4.2 62 1-62 27-89 (256)
87 3so6_A LDL receptor adaptor pr 37.0 74 0.0025 26.2 6.5 37 191-228 42-78 (137)
88 3mtn_B UBA80, ubcep1, ubiquiti 36.9 45 0.0015 24.8 4.7 54 1-60 22-75 (85)
89 3b08_A Polyubiquitin-C, ubiqui 36.6 51 0.0017 27.5 5.5 55 1-61 95-149 (152)
90 2ocy_A RAB guanine nucleotide 36.5 2.1E+02 0.0071 24.7 10.1 25 399-423 65-89 (154)
91 3dbh_I NEDD8; cell cycle, acti 35.6 36 0.0012 25.6 3.9 54 1-60 31-84 (88)
92 4b6x_A AVRRPS4, avirulence pro 35.3 1.5E+02 0.0051 22.7 8.8 63 407-469 27-89 (90)
93 1qqg_A IRS-1, insulin receptor 35.3 56 0.0019 30.7 6.0 59 193-252 178-239 (264)
94 2pjh_A Protein NPL4, nuclear p 34.9 28 0.00095 26.5 3.1 52 1-54 22-74 (80)
95 2uyz_B Small ubiquitin-related 34.9 37 0.0013 25.0 3.9 54 1-60 22-75 (79)
96 1p3r_A Disabled homolog 2; PTB 34.9 46 0.0016 28.8 4.9 36 192-228 59-94 (160)
97 1wt6_A Myotonin-protein kinase 34.8 1.4E+02 0.0049 22.8 6.9 39 426-465 30-68 (81)
98 2faz_A Ubiquitin-like containi 34.5 69 0.0024 23.4 5.3 54 1-60 23-76 (78)
99 3phx_B Ubiquitin-like protein 33.9 79 0.0027 23.1 5.6 54 1-60 23-76 (79)
100 1wxa_A Afadin, AF-6 protein; R 32.9 1.1E+02 0.0038 25.0 6.7 29 2-30 33-63 (116)
101 1aqc_A X11; PTB domain; 2.30A 32.8 68 0.0023 28.1 5.8 43 192-235 63-105 (172)
102 2eqb_B RAB guanine nucleotide 32.6 1.9E+02 0.0064 23.0 10.0 44 420-464 19-62 (97)
103 2q2f_A Selenoprotein S; anti-p 32.1 1.8E+02 0.006 22.6 7.7 12 418-429 49-60 (89)
104 2b9c_A Striated-muscle alpha t 32.0 2.4E+02 0.0082 24.0 11.0 13 455-467 100-112 (147)
105 2bwf_A Ubiquitin-like protein 31.9 86 0.0029 22.6 5.5 52 1-58 22-73 (77)
106 1sif_A Ubiquitin; hydrophobic 31.8 64 0.0022 24.5 4.9 54 1-60 28-81 (88)
107 1wy8_A NP95-like ring finger p 31.6 69 0.0024 24.1 5.0 55 1-61 28-82 (89)
108 1yx5_B Ubiquitin; proteasome, 31.4 80 0.0027 24.4 5.5 54 1-60 19-72 (98)
109 2kzr_A Ubiquitin thioesterase 31.1 57 0.0019 24.8 4.4 53 1-54 19-71 (86)
110 1wyw_B Ubiquitin-like protein 30.9 49 0.0017 25.8 4.1 54 1-60 40-93 (97)
111 2ej8_A DCC-interacting protein 30.3 82 0.0028 27.1 5.8 39 191-230 55-93 (160)
112 3k9o_B Ubiquitin, UBB+1; E2-25 29.7 88 0.003 23.9 5.4 55 1-61 20-74 (96)
113 2uwq_A Apoptosis-stimulating o 28.9 28 0.00097 27.2 2.2 56 1-61 27-85 (86)
114 3v6c_B Ubiquitin; structural g 28.9 70 0.0024 24.3 4.7 54 1-60 36-89 (91)
115 1wh3_A 59 kDa 2'-5'-oligoadeny 28.5 70 0.0024 23.9 4.5 54 1-60 26-79 (87)
116 1f5n_A Interferon-induced guan 28.4 2.8E+02 0.0097 29.2 10.6 23 246-268 293-315 (592)
117 3oja_B Anopheles plasmodium-re 28.3 2.3E+02 0.008 29.2 10.1 6 458-463 574-579 (597)
118 2e7s_A RAB guanine nucleotide 28.2 1.1E+02 0.0036 26.0 5.8 59 399-465 53-112 (135)
119 3iox_A AGI/II, PA; alpha helix 28.0 4.1E+02 0.014 27.3 11.1 15 451-465 82-96 (497)
120 3nr7_A DNA-binding protein H-N 28.0 1.5E+02 0.0051 23.0 6.2 8 457-464 60-67 (86)
121 2b9c_A Striated-muscle alpha t 27.9 1.5E+02 0.0052 25.3 6.9 24 418-441 99-122 (147)
122 1wmh_B Partitioning defective- 27.4 1.7E+02 0.0058 22.7 6.4 56 3-59 28-83 (86)
123 2dzi_A Ubiquitin-like protein 27.0 87 0.003 22.8 4.8 54 1-60 26-79 (81)
124 4efa_G V-type proton ATPase su 26.6 2.7E+02 0.0091 22.9 8.3 23 402-424 17-39 (119)
125 3vkg_A Dynein heavy chain, cyt 26.6 2.1E+02 0.0073 36.7 10.4 15 189-203 1644-1658(3245)
126 3k29_A Putative uncharacterize 26.4 3.2E+02 0.011 23.8 11.7 19 419-437 105-123 (169)
127 3iv1_A Tumor susceptibility ge 26.3 2.2E+02 0.0074 21.7 10.7 55 406-465 15-69 (78)
128 3o0z_A RHO-associated protein 25.2 3.4E+02 0.012 23.7 9.8 40 402-441 79-118 (168)
129 1n3h_A SHC transforming protei 25.1 1E+02 0.0035 27.9 5.6 36 192-228 119-154 (207)
130 2no2_A HIP-I, huntingtin-inter 25.0 2.7E+02 0.0092 22.4 11.0 26 401-426 17-42 (107)
131 2ela_A Adapter protein contain 24.7 98 0.0034 27.2 5.3 39 191-230 68-106 (175)
132 1i84_S Smooth muscle myosin he 24.6 2.6E+02 0.009 32.1 10.3 12 141-152 391-402 (1184)
133 3u06_A Protein claret segregat 24.5 2.2E+02 0.0076 28.5 8.6 48 413-461 10-57 (412)
134 1yqb_A Ubiquilin 3; structural 24.4 1E+02 0.0035 24.2 4.9 54 1-60 40-93 (100)
135 3vdz_A Ubiquitin-40S ribosomal 24.1 1.2E+02 0.004 24.3 5.3 54 1-60 54-107 (111)
136 3nmd_A CGMP dependent protein 23.9 2.1E+02 0.007 21.5 6.0 43 429-472 21-63 (72)
137 2l7r_A Ubiquitin-like protein 23.7 82 0.0028 24.2 4.1 54 1-60 36-89 (93)
138 2qag_B Septin-6, protein NEDD5 23.3 17 0.00059 37.0 0.0 27 161-188 189-216 (427)
139 3ni0_A Bone marrow stromal ant 23.0 2.8E+02 0.0096 21.9 8.1 52 418-469 23-80 (99)
140 3ljm_A Coil Ser L9C; de novo d 22.9 1.3E+02 0.0045 18.0 4.2 13 417-429 5-17 (31)
141 1v6e_A Cytoskeleton-associated 22.8 1.5E+02 0.0051 22.8 5.6 53 1-54 27-81 (95)
142 3f0w_A NUMB-R, NUMB-like prote 22.6 1.4E+02 0.0047 25.9 5.8 36 192-228 77-112 (168)
143 3m91_A Proteasome-associated A 22.5 2E+02 0.0068 20.0 6.5 22 433-454 25-46 (51)
144 2ojr_A Ubiquitin; lanthide-bin 22.5 1.4E+02 0.0047 23.7 5.5 54 1-60 54-107 (111)
145 2klc_A Ubiquilin-1; ubiquitin- 22.2 1.3E+02 0.0044 23.6 5.1 53 1-59 43-95 (101)
146 3oja_A Leucine-rich immune mol 21.8 3.9E+02 0.013 26.8 10.1 18 452-469 452-469 (487)
147 4fbj_B NEDD8; effector-HOST ta 21.4 1.2E+02 0.004 22.9 4.6 54 1-60 19-72 (88)
148 1t0y_A Tubulin folding cofacto 21.2 2E+02 0.0067 23.4 6.2 53 1-54 26-80 (122)
149 2kk8_A Uncharacterized protein 20.7 1.5E+02 0.0051 22.3 5.1 54 1-60 29-83 (84)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=4.3e-67 Score=563.58 Aligned_cols=357 Identities=57% Similarity=0.955 Sum_probs=326.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
|+|||+||++.||.+|||++.+||||+|.++++..+||++++++.+|+++.+.|+.|+||++|||+++...+.+++|++|
T Consensus 22 ~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRvkfy~~~~~~~l~d~~t~~L 101 (575)
T 2i1j_A 22 QTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKL 101 (575)
T ss_dssp TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEESSCCSSHHHHCCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEEEEcCCChhhhcCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999888889999999999999998744889999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
||+|+++||+.|++||+.++++.||||++|+++|||+++.|.++|+....|+|.+++.+++++++.|+.+|..+|+++.|
T Consensus 102 lYlQvk~dIl~G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G 181 (575)
T 2i1j_A 102 FYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRG 181 (575)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
||+.+|+..||++|++||+||++||.|+++.|+++||||++.||++|+++++.+|..+|||++|.+|+|++++|.|.+.+
T Consensus 182 ~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~~~k~~~l~~f~w~~I~~isf~~k~F~I~~~~ 261 (575)
T 2i1j_A 182 MLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPID 261 (575)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESC
T ss_pred CCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeCCCCcccceEecHHHhhcccCCCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999988
Q ss_pred CCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH
Q psy586 241 KSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI 320 (472)
Q Consensus 241 ~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I 320 (472)
....+++|++++.+.++.
T Consensus 262 ~~~~~l~F~t~~~~~ak~-------------------------------------------------------------- 279 (575)
T 2i1j_A 262 KKAPDFVFFAPRVRVNKR-------------------------------------------------------------- 279 (575)
T ss_dssp TTSCCEEEECSCHHHHHH--------------------------------------------------------------
T ss_pred CCcceeEEEeCCchhHHH--------------------------------------------------------------
Confidence 766789999998766554
Q ss_pred HHHHHhccCCChhHHHHHHHHHhhhccccCcceeecceeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhHHhh
Q psy586 321 KIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNK 400 (472)
Q Consensus 321 ~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~~~~ 400 (472)
.+.+|++.|.+++.++.+.+....+|.+.+|.....|..||++
T Consensus 280 -------------------------------------i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~ 322 (575)
T 2i1j_A 280 -------------------------------------ILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREK 322 (575)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------------HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677788888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy586 401 LAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQ 456 (472)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (472)
|++|+++|+++||++.+++.++.++|+++++|+++|.++.+++++.+|+.+.+.++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888887776655443
No 2
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=100.00 E-value=1.2e-55 Score=439.72 Aligned_cols=258 Identities=61% Similarity=1.126 Sum_probs=245.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
|+|||+||++.||++|||+|.+||||++.+.++..+||++++++.+|+++...++.|+||++|||+++...+.++++++|
T Consensus 19 ~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l 98 (294)
T 1ef1_A 19 PNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRAKFYPEDVSEELIQDITQRL 98 (294)
T ss_dssp TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEESSCCSCHHHHCCSHHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEEEEECCChHHhhccHHHHHH
Confidence 68999999999999999999999999999989999999999999999887888999999999999998744889999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
+|+|+++||++|+++|+.++|++||||++|+++|||+++.|.++|+....|+|+++++++++++++|+++|.+.|++++|
T Consensus 99 ~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g 178 (294)
T 1ef1_A 99 FFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRG 178 (294)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
||+.+|+.+||++|++||+||+++|.|++++|+++||||++.||.+++.+++.+|..+|+|++|.+|+|++++|.|.+.+
T Consensus 179 ~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~~ 258 (294)
T 1ef1_A 179 MLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPID 258 (294)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESS
T ss_pred CCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEEEEeCCCccccceEEEcccceEeeecCCEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999987788999999999999999999999988
Q ss_pred CCCCceeeehhhhhhhhh
Q psy586 241 KSSPNFIFFSLKVRMNKL 258 (472)
Q Consensus 241 ~~~~~~vF~t~q~r~~~l 258 (472)
....+++|++++.+.++.
T Consensus 259 ~~~~~~~f~~~~~~~~k~ 276 (294)
T 1ef1_A 259 KKAPDFVFYAPRLRINKR 276 (294)
T ss_dssp SSSCCEEEECSSHHHHHH
T ss_pred CccceEEEEeCCHHHHHH
Confidence 766789999998766543
No 3
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=100.00 E-value=9.5e-55 Score=437.39 Aligned_cols=257 Identities=69% Similarity=1.153 Sum_probs=243.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
++|||+||++.||++|||+|.+||||++. .++..+||++++++.+|+++.+.++.|.||++|||+++...+.++++++|
T Consensus 40 ~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~~~~l 118 (314)
T 1h4r_A 40 MKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHL 118 (314)
T ss_dssp TTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGGSSCCCSSSEEEEEEESSCCSSHHHHCCSHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHHcCCCCCCCEEEEEEEEEecCCchhhhcCHHHHHH
Confidence 68999999999999999999999999999 78889999999999999877788999999999999999744889999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
+|+|+++||++|+++|+.++|++||||++|+++|||+++.|.++|+....|+|+++++++++++++|+++|.++|++++|
T Consensus 119 ~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g 198 (314)
T 1h4r_A 119 FFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRG 198 (314)
T ss_dssp HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
||+.+|+.+||++|++||+||+++|.|++++|+++||||++.||.+++++++.+|..+|+|++|.+|+|++++|.|++.+
T Consensus 199 ~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w~~I~~~~~~~~~f~i~~~~ 278 (314)
T 1h4r_A 199 RARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLD 278 (314)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEECSSEEEEECTTCSSSCSEEEEGGGEEEEEEETTEEEEEESS
T ss_pred CCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEEeCCceEEEeCCCCcccceEEecccceEEEeeCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999887678999999999999999999999988
Q ss_pred CCCCceeeehhhhhhhhh
Q psy586 241 KSSPNFIFFSLKVRMNKL 258 (472)
Q Consensus 241 ~~~~~~vF~t~q~r~~~l 258 (472)
.....++|++++.+.++.
T Consensus 279 ~~~~~~~f~~~~~~~~k~ 296 (314)
T 1h4r_A 279 KKIDVFKFNSSKLRVNKL 296 (314)
T ss_dssp TTSCCEEEECCCHHHHHH
T ss_pred CCCceEEEEcCCHHHHHH
Confidence 777789999988666543
No 4
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=100.00 E-value=4.7e-52 Score=414.40 Aligned_cols=244 Identities=30% Similarity=0.496 Sum_probs=222.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL 80 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L 80 (472)
|+|||+||++.||++|||+|.+||||++.++++..+||++++++.+|. .+.|++|.||++|||+++.. +.+++|++|
T Consensus 36 ~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~--~~~~~~l~frvkfy~~~~~~-l~~~~tr~l 112 (296)
T 3qij_A 36 KHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV--RGVPWNFTFNVKFYPPDPAQ-LTEDITRYY 112 (296)
T ss_dssp TTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC-----CCEEEEEESSCCSCGGG-SSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc--CCCCcEEEEEEEEeCCCchh-ccCHHHHHH
Confidence 689999999999999999999999999999888999999999999986 35789999999999999885 999999999
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
+|+|+++||++|+++|+.|+|++||||++|+++|||+++.+.++|+....++|.+ .++|+++|.++|++++|
T Consensus 113 ~ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~--------~~~~~~~I~~~h~~~~g 184 (296)
T 3qij_A 113 LCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQ--------TKELEEKVMELHKSYRS 184 (296)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSC--------CHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcC--------HHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999988999999988999974 35799999999999999
Q ss_pred CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586 161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d 240 (472)
||+.+|+.+||++|++||+||+++|.|++..|+++||||++.||.+|+++++ +.+|||++|.+|+|++++|.|++.+
T Consensus 185 ~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi~v~~~~~k---l~~f~w~~I~~~s~~~k~F~i~~~~ 261 (296)
T 3qij_A 185 MTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLR---INRFPWPKVLKISYKRSSFFIKIRP 261 (296)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEEEEEETTEE---EEEEEGGGEEEEEEETTEEEEEEC-
T ss_pred CCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeEEEEeCCCe---EEEEEhhhcCEEEecCCEEEEEEec
Confidence 9999999999999999999999999999999999999999999999998765 5899999999999999999999864
Q ss_pred CC----CCceeeehhhhhhhhh
Q psy586 241 KS----SPNFIFFSLKVRMNKL 258 (472)
Q Consensus 241 ~~----~~~~vF~t~q~r~~~l 258 (472)
.. ..++.|+++..+.++.
T Consensus 262 ~~~~~~~~~~~f~~~~~~~~k~ 283 (296)
T 3qij_A 262 GEQEQYESTIGFKLPSYRAAKK 283 (296)
T ss_dssp ------CEEEEEECSSHHHHHH
T ss_pred CccCCccceEEEECCCHHHHHH
Confidence 32 2467788888776654
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=100.00 E-value=3.2e-45 Score=376.19 Aligned_cols=243 Identities=21% Similarity=0.344 Sum_probs=214.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcC----CCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchh
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDN----KGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEV 76 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~----~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~ 76 (472)
++|||+||++.||++|||++.+||||++.+. ++...||++++++.+|+. ..++.|.||+|||+.++...+.|++
T Consensus 104 ~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~--~~~~~l~frvKf~~~d~~~~~~D~~ 181 (371)
T 3ivf_A 104 DSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV--EEHETLLLRRKFFYSDQNVDSRDPV 181 (371)
T ss_dssp TTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTC--CTTCEEEEEECCCCBCSSCBTTCHH
T ss_pred CCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCC--CCCceEEEEEEEecCCccccCCCHH
Confidence 6899999999999999999999999998864 567899999999999974 3467899999999987665467999
Q ss_pred HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHH
Q psy586 77 TQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYA 156 (472)
Q Consensus 77 t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~ 156 (472)
+++|+|+|+++||++|+++|+.++|++||||++|+++|||+++.|.++|+....|+|.+++.+. . +++|.+.|+
T Consensus 182 ~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~----~--e~~I~~~~~ 255 (371)
T 3ivf_A 182 QLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQK----G--ERKIFQAHK 255 (371)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSC----H--HHHHHHHHH
T ss_pred HHHHHHHHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCch----H--HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888999999987621 2 678999999
Q ss_pred hhcCCChHHHHHHHHHHHhcccCCCceEEeeeecC-C----CceEEEecCCceEEEecCCccccceeeecccccceeecc
Q psy586 157 DHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKK-D----TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDD 231 (472)
Q Consensus 157 ~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~-~----~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~ 231 (472)
+++|+|+.+|+.+||++|++||+||++||.|++.. | .++|||||+.||++++++++ .+..+|||++|.+|+++.
T Consensus 256 ~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k-~~l~~~~~~~I~~~~~~~ 334 (371)
T 3ivf_A 256 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK-EVIQEWSLTNIKRWAASP 334 (371)
T ss_dssp HTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEEETTTC-CEEEEEEGGGCCEEEEET
T ss_pred HccCCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCCCC-ceEEeeehhheeeeecCC
Confidence 99999999999999999999999999999997553 3 37999999999999999888 578999999999999999
Q ss_pred eeeEEEecCCCCCceeeehhh
Q psy586 232 KKFIIKPVDKSSPNFIFFSLK 252 (472)
Q Consensus 232 kkF~I~~~d~~~~~~vF~t~q 252 (472)
+.|.|.+.+.....+.|.|++
T Consensus 335 ~~f~I~~~~~~~~~~~~~T~~ 355 (371)
T 3ivf_A 335 KSFTLDFGDYQDGYYSVQTTE 355 (371)
T ss_dssp TEEEEECGGGSSSCEEEECSC
T ss_pred CEEEEEECCccCcEEEEECCh
Confidence 999999987655567787766
No 6
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=100.00 E-value=1.1e-41 Score=343.63 Aligned_cols=247 Identities=18% Similarity=0.304 Sum_probs=206.3
Q ss_pred CcccHHHHHHHHHHHhCCC--ccCceeEEEEcCCCc-------------ccccccchhhhccCccCCCceeEEEEeeeec
Q psy586 1 WRATGRDLFDLVCRTVGLR--ETWYFGLQYEDNKGF-------------IAWLKLDKKVQDQGISNQCTTPFMFLAKFYA 65 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~--e~~~FGL~~~~~~~~-------------~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~ 65 (472)
|+|||+|| |+.+||+ +..+|||++.++..+ ..|+++.+++.++....+.| .|+||+++|.
T Consensus 26 ~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~l~~~~~~~~~~~~p-~l~~rr~~f~ 100 (322)
T 4dxa_B 26 NNTTVQQI----MEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAELTNLDPQRETP-QLFLRRDVRL 100 (322)
T ss_dssp GGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHHHHHHCSCCCCCCCC-EEEEEECTTC
T ss_pred CCCcHHHH----HHHhCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHHHHHhcCCCCCCCce-EEEEEEeecc
Confidence 48999999 5668987 568999999976543 58999999998886554555 6777776665
Q ss_pred c-CchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCc---ccccCchHHHhhcC
Q psy586 66 E-DVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLA---SEDLLPQRVIDQYQ 141 (472)
Q Consensus 66 ~-~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~---~~~~lP~~v~~~~~ 141 (472)
+ ++...+.|+++++|+|+|+++||++|+++|+.+++++||||++|+++|||++..|.++|++ ...|+|.++++.
T Consensus 101 ~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~-- 178 (322)
T 4dxa_B 101 PLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKS-- 178 (322)
T ss_dssp CHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTT--
T ss_pred cccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhc--
Confidence 4 5544478999999999999999999999999999999999999999999999889999986 468999998863
Q ss_pred CCHHHHHHHHHHHHHhh---cCCChH--HHHHHHHHHHhcccCCCceEEeeee--------cCCCceEEEecCCceEEEe
Q psy586 142 MTPEMWEDRIKIWYADH---RGMSRD--EAEMEYLKIAQDLDMYGVNYFPISN--------KKDTDLWLGVTALGLNIYE 208 (472)
Q Consensus 142 ~~~~~~e~~I~~~h~~~---~g~s~~--eA~~~yLkiaq~l~~yG~~~F~vk~--------~~~~~~~LgV~~~GI~i~~ 208 (472)
+.++|+++|.++|+++ +|||++ +|+.+||++|++||+||++||.|+. ..++++|||||+.||++++
T Consensus 179 -~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~ 257 (322)
T 4dxa_B 179 -KAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLN 257 (322)
T ss_dssp -TGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEEEEECSSEEEEEE
T ss_pred -CHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEEc
Confidence 3457999999999999 999985 4699999999999999999999973 2245999999999999999
Q ss_pred cCCccccceeeeccccccee--ecceeeEEEecCCCCCceeeehhh-hhhhhh
Q psy586 209 KENKLTPKTTFPWSEIRHIS--FDDKKFIIKPVDKSSPNFIFFSLK-VRMNKL 258 (472)
Q Consensus 209 ~~~k~~p~~~f~ws~I~~~s--f~~kkF~I~~~d~~~~~~vF~t~q-~r~~~l 258 (472)
.+++. ++.++||++|. |+ +++++|.|.+.+.. ..++|+|.+ .+++.+
T Consensus 258 ~~tk~-~l~~~~~~~is-w~~s~~~~~f~i~~~~~~-~~~~~~t~q~~~i~~l 307 (322)
T 4dxa_B 258 METKA-LLISLKYGCFM-WQLGDTDTCFQIHSMENK-MSFIVHTKQAGLVVKL 307 (322)
T ss_dssp TTTCC-EEEEEETTSEE-EEECSSTTEEEEEESSSC-CEEEEECTTHHHHHHH
T ss_pred CCCce-eeeccccceeE-EeecCCCCEEEEEECCCC-ccEEEEeCcHHHHHHH
Confidence 99884 78999999997 88 77889999998754 357888777 355544
No 7
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=100.00 E-value=8.3e-41 Score=343.67 Aligned_cols=264 Identities=13% Similarity=0.251 Sum_probs=214.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcC-CCcccccccchhhhccCc-----cCCCceeEEEEeeeeccCchhhh-c
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDN-KGFIAWLKLDKKVQDQGI-----SNQCTTPFMFLAKFYAEDVAEEL-V 73 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~-~~~~~wL~~~kkl~~q~~-----~~~~~~~l~fr~kfy~~~~~~~l-~ 73 (472)
++|||+||++.||++|||.+.++|||++.+. ++..+||++++++.++.. ....+++|.||++|||+++.... .
T Consensus 30 ~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~~~~~~~~l~fRvrF~~~~~~~l~~~ 109 (375)
T 2al6_A 30 DATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTE 109 (375)
T ss_dssp TTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHTTSCGGGEEEEEEECCCCTTHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhcccCCCceEEEEEEEEecCCHHHhhhc
Confidence 5899999999999999999999999999865 567889999999987642 13368999999999999986533 3
Q ss_pred chhHHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhCCCCCCCCc----cCcC----cccccCchHHHhhcCCCH
Q psy586 74 QEVTQHLFFLQVKQAILSMD-IYCPPEASVLLASYAVQAKYGDYDDSTYK----PGML----ASEDLLPQRVIDQYQMTP 144 (472)
Q Consensus 74 ~~~t~~LlylQvk~~iL~g~-~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~----~~~l----~~~~~lP~~v~~~~~~~~ 144 (472)
|+++++|+|+|+++||++|+ ++|+.++|+.||||++|+++|||+...+. .+++ ....|+|+++++ .++.
T Consensus 110 D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~k~~~l~~flP~~~~~--~~~~ 187 (375)
T 2al6_A 110 DKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLD--SVKA 187 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHH--SSCH
T ss_pred CHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhhhcccHHHhCCHHHHH--HhCh
Confidence 67899999999999999999 78999999999999999999999755321 2232 346999999998 4567
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCC----CceEEEecCCceEEEecCCccccceeee
Q psy586 145 EMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD----TDLWLGVTALGLNIYEKENKLTPKTTFP 220 (472)
Q Consensus 145 ~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~----~~~~LgV~~~GI~i~~~~~k~~p~~~f~ 220 (472)
+.|+++|..+|+++.|||+++|+++||+++++||+||+++|.|++..| ..++||++. ||.++.++++ .+...|+
T Consensus 188 ~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~~~~~~~l~lg~~~-GI~~~~~~~~-~~~~~~~ 265 (375)
T 2al6_A 188 KTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE-GISYLTDKGA-NPTHLAD 265 (375)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSSSCEEEEEEEETTT-EEEEESSTTS-CEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEEEeecCCCCcceEEEEecCC-CEEEEeCCCC-ceEEEec
Confidence 899999999999999999999999999999999999999999987765 588999875 9999987665 5789999
Q ss_pred cccccceeec-----c--eeeEEEecCCCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcch
Q psy586 221 WSEIRHISFD-----D--KKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLL 278 (472)
Q Consensus 221 ws~I~~~sf~-----~--kkF~I~~~d~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~ 278 (472)
|++|.+|++. . ..|.|...+. ...+.|.++..+.... -+.++.+|+.+
T Consensus 266 f~~I~~i~~~~~~~~~~~~~~~I~v~~~-~~~~~f~~~t~~~a~~---------i~~Li~gY~rl 320 (375)
T 2al6_A 266 FNQVQTIQYSNSEDKDRKGMLQLKIAGA-PEPLTVTAPSLTIAEN---------MADLIDGYCRL 320 (375)
T ss_dssp GGGEEEEEEECCSSSCCCEEEEEEETTC-SSCEEEEESSHHHHHH---------HHHHHHHHHHH
T ss_pred hhHccEEEEEeccccCCceEEEEEECCC-CCcEEEEeCCHHHHHH---------HHHHHhhheEE
Confidence 9999999762 2 3466664432 3445555444322211 25677787444
No 8
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=100.00 E-value=9.9e-41 Score=363.73 Aligned_cols=245 Identities=15% Similarity=0.203 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCc-------ccccccchhhh----ccC-ccCCCceeEEEEeeeeccCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGF-------IAWLKLDKKVQ----DQG-ISNQCTTPFMFLAKFYAEDV 68 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~-------~~wL~~~kkl~----~q~-~~~~~~~~l~fr~kfy~~~~ 68 (472)
++|||+||++.||++|||.+.+||||++.+.+.. ..|+|...++. ++. .+...+++|+||++||+++.
T Consensus 282 s~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk~~sll~~~e~vlD~l~~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~ 361 (655)
T 3pvl_A 282 SATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWH 361 (655)
T ss_dssp TTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTEEEEEETSSCBHHHHHHHHHHHHHTTTCCGGGCCCEEEEEECCCCTTC
T ss_pred cCCcHHHHHHHHHHHcCCcccccceeEEecCCceeecccCceEeecHHHHHHHHHHhhccccCCCCeEEEEEEEEecCCc
Confidence 5899999999999999999999999999755433 33444432221 111 12346899999999999866
Q ss_pred hhhhcchhHHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHH
Q psy586 69 AEELVQEVTQHLFFLQVKQAILSMDIYCPPE-ASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW 147 (472)
Q Consensus 69 ~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e-~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~ 147 (472)
.. +.|+++++|+|+|+++||+.|+++|+.| +++.||||++|+++|||++..+....+ ..|+|.+++.+. .+.++|
T Consensus 362 ~~-~~d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L--~~~lP~~~l~~~-~~~~~w 437 (655)
T 3pvl_A 362 NP-SEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILERLLSLV--PTYIPDREITPL-KNLEKW 437 (655)
T ss_dssp CG-GGCHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--HHHSCGGGCCSS-SCHHHH
T ss_pred cc-ccCHHHHHHHHHHHhcccccCccCCChHHHHHHHHHHHHHHHhCCCcchhhHHHHH--HHhCCHHHHhcc-CCHHHH
Confidence 64 7899999999999999999999999976 999999999999999998654433333 579999987632 368999
Q ss_pred HHHHHHHHHhh----cCCChHHHHHHHHHHH-hcccCCCceEEeeeecCC-----CceEEEecCCceEEEecCCccccce
Q psy586 148 EDRIKIWYADH----RGMSRDEAEMEYLKIA-QDLDMYGVNYFPISNKKD-----TDLWLGVTALGLNIYEKENKLTPKT 217 (472)
Q Consensus 148 e~~I~~~h~~~----~g~s~~eA~~~yLkia-q~l~~yG~~~F~vk~~~~-----~~~~LgV~~~GI~i~~~~~k~~p~~ 217 (472)
+++|..+|+++ +|+|+.+|+.+||++| ++||+||++||.|++..| +++|||||+.||++++.+++. +.
T Consensus 438 ~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV~v~d~~~k~--ll 515 (655)
T 3pvl_A 438 AQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQV--LL 515 (655)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEEEEECTTCCE--EE
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCceEEEcCCCce--EE
Confidence 99999999999 9999999999999999 899999999999998777 589999999999999998873 56
Q ss_pred eeecccccceeecc------eeeEEEecCCCCCceeeehhhh
Q psy586 218 TFPWSEIRHISFDD------KKFIIKPVDKSSPNFIFFSLKV 253 (472)
Q Consensus 218 ~f~ws~I~~~sf~~------kkF~I~~~d~~~~~~vF~t~q~ 253 (472)
+|||++|.+|+++. ++|+|.+.+ ..+|+|+|++.
T Consensus 516 ~f~~~eI~~is~~~~~~~~~~~ftl~~~~--~~~~~F~T~~a 555 (655)
T 3pvl_A 516 ELSFPEIMAVSSSRGTKMMAPSFTLATIK--GDEYTFTSSNA 555 (655)
T ss_dssp EEEGGGEEEEEEECCCSSSCCEEEEEETT--SCEEEEECTTH
T ss_pred EechhHceEEeccCcccccccEEEEEecc--CceEEEEcCCH
Confidence 89999999999987 689998764 45799998884
No 9
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=100.00 E-value=2.5e-38 Score=341.10 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=206.8
Q ss_pred CcccHHHHHHHHHHHhCCCc-cCceeEEEEcCCCcccccccchhhhccC----------ccCCCceeEEEEeeeeccCch
Q psy586 1 WRATGRDLFDLVCRTVGLRE-TWYFGLQYEDNKGFIAWLKLDKKVQDQG----------ISNQCTTPFMFLAKFYAEDVA 69 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e-~~~FGL~~~~~~~~~~wL~~~kkl~~q~----------~~~~~~~~l~fr~kfy~~~~~ 69 (472)
++|||+||++.||++|||.+ ..||||++.+ ++..+||++++.+.+.. ...+.+++|+||++||+++..
T Consensus 235 ~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~~i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~~~~~ 313 (555)
T 3au4_A 235 SHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRTVVADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTDN 313 (555)
T ss_dssp TTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTSBHHHHHHHHHHHTTSCCTTCCCCEEEEEEEECSCCTT
T ss_pred CCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCCchhHHHHHHHHHhhccCCCCCceEEEEEEEeecCccc
Confidence 58999999999999999998 6799998764 55668999988776531 112468999999999987765
Q ss_pred hhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhc---------
Q psy586 70 EELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQY--------- 140 (472)
Q Consensus 70 ~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~--------- 140 (472)
. ..|+++++|+|+|+++||++|+++|+.++++.||||++|+++|||++..+.+ ..+.|+|..+++..
T Consensus 314 ~-~~d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl~lQ~~~GD~~~~~~~~---~l~~~lP~~~l~~~~~~~~k~~s 389 (555)
T 3au4_A 314 V-PKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQYLQGDYTLHAAIP---PLEEVYSLQRLKARISQSTKTFS 389 (555)
T ss_dssp C-CTTSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHCSCCTTCCCC---CGGGTSCCHHHHHHHHHTTCCEE
T ss_pred C-CcchHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHcCCCccccchh---hhhhhCCHHHhhhhhcccccccc
Confidence 4 5678999999999999999999999999999999999999999999864332 33689999876530
Q ss_pred -------------CCCHHHH--------HHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCC---CceE
Q psy586 141 -------------QMTPEMW--------EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD---TDLW 196 (472)
Q Consensus 141 -------------~~~~~~~--------e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~---~~~~ 196 (472)
.+++++| +++|.+.|++++|||+.+|+.+||++|++||+||+++|.|+++.| .++|
T Consensus 390 ~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F~v~~~~~~~~~~l~ 469 (555)
T 3au4_A 390 FRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELW 469 (555)
T ss_dssp CCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEEEESSSCSEEE
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcCceEEEEEecCCCCCceEE
Confidence 0134566 889999999999999999999999999999999999999987765 6999
Q ss_pred EEecCCceEEEecCCccccceeeeccccccee-ecceeeEEEecCCCCCceeeehhhh
Q psy586 197 LGVTALGLNIYEKENKLTPKTTFPWSEIRHIS-FDDKKFIIKPVDKSSPNFIFFSLKV 253 (472)
Q Consensus 197 LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s-f~~kkF~I~~~d~~~~~~vF~t~q~ 253 (472)
|||++.||++++++++. +..+|||++|.+|+ +.++.|.|.+.+. +++|.|++.
T Consensus 470 LgV~~~GI~v~~~~~k~-~l~~~~~~~I~~~~~~~~~~f~i~~~~~---~l~f~T~qa 523 (555)
T 3au4_A 470 LGVSADAVSVYKRGEGR-PLEVFQYEHILSFGAPLANTYKIVVDER---ELLFETSEV 523 (555)
T ss_dssp EEECSSEEEEEETTCSS-CSEEEEGGGEEEEEEEETTEEEEEETTE---EEEEECTTH
T ss_pred EEEcccceEEECCCCCe-eEEEEEhhheeeecCCCCCEEEEEECCc---EEEEECCCH
Confidence 99999999999998874 67899999999999 4678899998753 688888763
No 10
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=100.00 E-value=3.1e-38 Score=298.05 Aligned_cols=185 Identities=24% Similarity=0.367 Sum_probs=168.9
Q ss_pred eeeeccCchhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhc
Q psy586 61 AKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQY 140 (472)
Q Consensus 61 ~kfy~~~~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~ 140 (472)
||||+.++...+.|+++++|+|+|+++||++|+++|+.++|++||||++|+++|||+++.|.++|+...+|+|++++++.
T Consensus 1 vkf~~~d~~~~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~ 80 (206)
T 1mix_A 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 80 (206)
T ss_dssp CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTC
T ss_pred CcccCCCCCCCcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcc
Confidence 68999888755888999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecC-C----CceEEEecCCceEEEecCCcccc
Q psy586 141 QMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKK-D----TDLWLGVTALGLNIYEKENKLTP 215 (472)
Q Consensus 141 ~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~-~----~~~~LgV~~~GI~i~~~~~k~~p 215 (472)
+ +++|.++|++++|||+.+|+.+||++|++||+||+++|.|++.. | .++||||++.||.+++++++. +
T Consensus 81 ~------~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~-~ 153 (206)
T 1mix_A 81 G------ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKE-V 153 (206)
T ss_dssp C------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCC-E
T ss_pred c------HHHHHHHHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCc-e
Confidence 2 78999999999999999999999999999999999999998765 4 689999999999999998884 5
Q ss_pred ceeeecccccceeecceeeEEEecCCCCCceeeehhh
Q psy586 216 KTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLK 252 (472)
Q Consensus 216 ~~~f~ws~I~~~sf~~kkF~I~~~d~~~~~~vF~t~q 252 (472)
..+|||++|.+|++++++|.|.+.+.....+.|.|.+
T Consensus 154 l~~~~~~~I~~~~~~~~~f~i~~~~~~~~~~~~~t~~ 190 (206)
T 1mix_A 154 IQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTE 190 (206)
T ss_dssp EEEEEGGGCCEEEECSSEEEEECGGGSSSCEEEECSC
T ss_pred eeeeehhHeeecccCCCEEEEEeCcccceEEEEECCc
Confidence 7899999999999999999999987654567777765
No 11
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=3.7e-38 Score=338.86 Aligned_cols=225 Identities=36% Similarity=0.496 Sum_probs=196.4
Q ss_pred ceeecceeeEEEec-CCCCC-ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCCh
Q psy586 226 HISFDDKKFIIKPV-DKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQ 303 (472)
Q Consensus 226 ~~sf~~kkF~I~~~-d~~~~-~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~ 303 (472)
.+.|+++.|.-.+. ....+ +..+++.|++.|++.|+++|+.++++.|||| ++|++||||+++.|.++|+....|+|+
T Consensus 77 ~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c~~e~a~~LAAL-~lQae~GDy~~~~~~~~yl~~~~~lP~ 155 (575)
T 2i1j_A 77 QFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY-AVQARHGDHNPAVHGPGFLANDRLLPQ 155 (575)
T ss_dssp EEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH-HHHHHHCSCCTTTCCTTTTTTCCCSCH
T ss_pred EEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHHhcCCChhhcccccccccccCCH
Confidence 37788876654443 22222 3345669999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCcccc
Q psy586 304 RVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMR 371 (472)
Q Consensus 304 ~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~ 371 (472)
+++++++++++.|+.+|..+|+.|.||||.+|+++||++|++|++|||++|+|+ ..||.|+..+..++
T Consensus 156 ~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~~~k~~ 235 (575)
T 2i1j_A 156 RVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLT 235 (575)
T ss_dssp HHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEETTCSSS
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeCCCCcc
Confidence 999998899999999999999999999999999999999999999999999983 34666665555556
Q ss_pred ccCCCCHHHHHHHhhhhhhhhhhhhHH-------------------------------------------hhhHHHHHHH
Q psy586 372 RRKPDTMEIQQMKSQAKEEKSRRQIER-------------------------------------------NKLAREKQLR 408 (472)
Q Consensus 372 ~~~~f~w~~i~~~s~~rk~f~i~~~~~-------------------------------------------~~~~~~~~~~ 408 (472)
+..+|+|+.|.++||.+++|.|+++++ +.+|||+|.+
T Consensus 236 ~l~~f~w~~I~~isf~~k~F~I~~~~~~~~~l~F~t~~~~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~ 315 (575)
T 2i1j_A 236 PKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLA 315 (575)
T ss_dssp CSEEEEGGGEEEEEEETTEEEEEESCTTSCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred cceEecHHHhhcccCCCCeEEEEEccCCcceeEEEeCCchhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Confidence 667899999999999999999987642 3349999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhC
Q psy586 409 EAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472 (472)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (472)
+++||+++++|+ ++|+.||+++.+|++||.|++++++.|+++|
T Consensus 316 ~~~e~~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 316 KQAQREKLQLEI---------------------AARERAEKKQQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHHTTCCSCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887 5699999999999999999999999999875
No 12
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=100.00 E-value=2.2e-35 Score=282.16 Aligned_cols=173 Identities=22% Similarity=0.333 Sum_probs=157.8
Q ss_pred cchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHH
Q psy586 73 VQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIK 152 (472)
Q Consensus 73 ~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~ 152 (472)
.||++++|+|+|+++||++|+++|+.++|++||||++|+++|||+++.+.++|+....|+|++++.+ .|+++|.
T Consensus 24 ~Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~------~~~~~I~ 97 (222)
T 4f7g_A 24 RDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQ------KGERKIF 97 (222)
T ss_dssp --CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGG------CCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhh------hhHHHHH
Confidence 4788999999999999999999999999999999999999999999999999998899999998763 3678999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecC-C----CceEEEecCCceEEEecCCccccceeeecccccce
Q psy586 153 IWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKK-D----TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHI 227 (472)
Q Consensus 153 ~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~-~----~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~ 227 (472)
++|++++|+|+.+|+.+||++|++||+||+++|.|++.. | .++||||++.||.+++++++ .+..+|||++|.+|
T Consensus 98 ~~h~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk-~~l~~~~~~~I~~~ 176 (222)
T 4f7g_A 98 QAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK-EVIQEWSLTNIKRW 176 (222)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTC-CEEEEEEGGGCCEE
T ss_pred HHHHhccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCC-ceeEeccHHHeeee
Confidence 999999999999999999999999999999999998765 3 48999999999999999888 47899999999999
Q ss_pred eecceeeEEEecCCCCCceeeehhh
Q psy586 228 SFDDKKFIIKPVDKSSPNFIFFSLK 252 (472)
Q Consensus 228 sf~~kkF~I~~~d~~~~~~vF~t~q 252 (472)
++..++|.|.+.+.....+.|.|.+
T Consensus 177 ~~~~~~f~I~~~~~~~~~~~~~T~q 201 (222)
T 4f7g_A 177 AASPKSFTLDFGDYQDGYYSVQTTE 201 (222)
T ss_dssp EECSSEEEEECCTTSSSCEEEECSC
T ss_pred ccCCCEEEEEECCccceEEEEECCc
Confidence 9999999999987655567788766
No 13
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=283.69 Aligned_cols=227 Identities=13% Similarity=0.232 Sum_probs=192.0
Q ss_pred CcccHHHHHHHHH--HHhCC--CccCceeEEEEc-CCCcccccccchhhhccCccC-----CCceeEEEEeeeeccCchh
Q psy586 1 WRATGRDLFDLVC--RTVGL--RETWYFGLQYED-NKGFIAWLKLDKKVQDQGISN-----QCTTPFMFLAKFYAEDVAE 70 (472)
Q Consensus 1 p~ttg~eL~~~V~--~~lgL--~e~~~FGL~~~~-~~~~~~wL~~~kkl~~q~~~~-----~~~~~l~fr~kfy~~~~~~ 70 (472)
++||++|++..|| .++|+ .+.++|||++.. ..+..+||++++++.++..+. ..+++|.||++|||.++..
T Consensus 46 ~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~ 125 (392)
T 4eku_A 46 VQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFME 125 (392)
T ss_dssp TTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTTSCGGGEEEEEEECSCCTTTHH
T ss_pred CCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHHHhhhhhccCCCceEEEEEEEEEcCCHHH
Confidence 5799999999999 68885 689999999874 456789999999999874221 2478999999999999765
Q ss_pred hh-cchhHHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhCCCCCCCC----ccC----cCcccccCchHHHhhc
Q psy586 71 EL-VQEVTQHLFFLQVKQAILSMD-IYCPPEASVLLASYAVQAKYGDYDDSTY----KPG----MLASEDLLPQRVIDQY 140 (472)
Q Consensus 71 ~l-~~~~t~~LlylQvk~~iL~g~-~~c~~e~av~LAAl~~Qa~~Gd~~~~~~----~~~----~l~~~~~lP~~v~~~~ 140 (472)
.+ .|+++.++||+|+++|+++|. .+|+.|+|+.||||++|+.+||++.... ... ++..+.|+|+.++.
T Consensus 126 l~~~D~~~~~ylY~Q~r~D~l~g~~~~~~~e~al~LAaL~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~-- 203 (392)
T 4eku_A 126 SLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQE-- 203 (392)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHH--
T ss_pred hhhcChHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHh--
Confidence 23 468888999999999999998 7899999999999999999999986431 111 23456899999988
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCC--CceEEEecCCceEEEecCCcccccee
Q psy586 141 QMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD--TDLWLGVTALGLNIYEKENKLTPKTT 218 (472)
Q Consensus 141 ~~~~~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~--~~~~LgV~~~GI~i~~~~~k~~p~~~ 218 (472)
.++.+.|+.+|...|+++.|+|+.+|+..||+++++||+||+++|.|+...| .+++|.|++.||.+.+++++ .+...
T Consensus 204 ~ik~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~~~k~~-~~~~~ 282 (392)
T 4eku_A 204 NLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDA-KPTCL 282 (392)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEECSSCS-CCEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEEEEEeccCCcceeEEEEcCCcEEEECCCCC-ceeEE
Confidence 4568899999999999999999999999999999999999999999986554 46677777779999987766 47899
Q ss_pred eecccccceeec
Q psy586 219 FPWSEIRHISFD 230 (472)
Q Consensus 219 f~ws~I~~~sf~ 230 (472)
++|++|.+|+..
T Consensus 283 ~~f~~I~~Is~~ 294 (392)
T 4eku_A 283 AEFKQIRSIRCL 294 (392)
T ss_dssp ECGGGBCCCCEE
T ss_pred echHHceEEEEE
Confidence 999999999764
No 14
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.97 E-value=3.9e-29 Score=274.40 Aligned_cols=227 Identities=12% Similarity=0.254 Sum_probs=192.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcC-CCcccccccchhhhcc-----CccCCCceeEEEEeeeeccCchhhh-c
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDN-KGFIAWLKLDKKVQDQ-----GISNQCTTPFMFLAKFYAEDVAEEL-V 73 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~-~~~~~wL~~~kkl~~q-----~~~~~~~~~l~fr~kfy~~~~~~~l-~ 73 (472)
++|||++|++.||+++||.+.+||||++.+. ++..+||++++++.++ ......+|++.||+||||.++...+ .
T Consensus 30 ~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~rvrf~p~~~~~l~~~ 109 (656)
T 2j0j_A 30 DATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKYELRIRYLPKGFLNQFTE 109 (656)
T ss_dssp TTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTSCTTSEEEEEEECCCCTTHHHHHHT
T ss_pred CCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhcccCCCcceEEEEEEEEcCCCHHHHHhc
Confidence 5799999999999999999999999999877 6889999999999882 2234579999999999999999732 4
Q ss_pred chhHHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhCCCCCCCCc--------cCcCcccccCchHHHhhcCCCH
Q psy586 74 QEVTQHLFFLQVKQAILSMDIY-CPPEASVLLASYAVQAKYGDYDDSTYK--------PGMLASEDLLPQRVIDQYQMTP 144 (472)
Q Consensus 74 ~~~t~~LlylQvk~~iL~g~~~-c~~e~av~LAAl~~Qa~~Gd~~~~~~~--------~~~l~~~~~lP~~v~~~~~~~~ 144 (472)
|..++++||+|+|.|+++|+.+ |+.++|+.||+|.+|+.|||++..... .+.+..+.|+|+.++.+ +..
T Consensus 110 d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La~l~~~~~~~d~~~~a~~~~~~~~~~~k~~~~~~fiP~~~~~~--~~~ 187 (656)
T 2j0j_A 110 DKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDS--VKA 187 (656)
T ss_dssp CHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTTGGGTSCHHHHHH--SCH
T ss_pred cHHHHHHHHHHHHHHHHhcccccccHhHHHHHHHHHHHHHhhhccchhhhcCCCHHHHHhhccHHHhCCHHHHHH--hhh
Confidence 5579999999999999999997 999999999999999999999655211 11234468999999985 457
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccCCCceEEeeeecCCCc--eEEEecCC-ceEEEecCCccccceeeec
Q psy586 145 EMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTD--LWLGVTAL-GLNIYEKENKLTPKTTFPW 221 (472)
Q Consensus 145 ~~~e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~--~~LgV~~~-GI~i~~~~~k~~p~~~f~w 221 (472)
+.++++|.+.|+++.|+++.+|+++||+.++.+++||++.|.|++..|.. +-|.|++. ||........ .+...+.|
T Consensus 188 ~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~~~~~l~vg~~~GI~~~~~~~~-~~~~~~~f 266 (656)
T 2j0j_A 188 KTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGA-NPTHLADF 266 (656)
T ss_dssp HHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSEEEEEEEEETTTEEEECCSSSS-CCEEEECG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeeccCCCCcccEEEEECCCCCeEEECCCCC-Cceecccc
Confidence 78999999999999999999999999999999999999999999988843 45555554 9997654433 57789999
Q ss_pred ccccceeec
Q psy586 222 SEIRHISFD 230 (472)
Q Consensus 222 s~I~~~sf~ 230 (472)
++|.+|.+.
T Consensus 267 ~~I~~I~~~ 275 (656)
T 2j0j_A 267 NQVQTIQYS 275 (656)
T ss_dssp GGEEEBCEE
T ss_pred cceeEEEEe
Confidence 999999776
No 15
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.95 E-value=6.5e-30 Score=254.10 Aligned_cols=172 Identities=33% Similarity=0.515 Sum_probs=148.9
Q ss_pred ceeecceeeEEEec-CCCCC-ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCCh
Q psy586 226 HISFDDKKFIIKPV-DKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQ 303 (472)
Q Consensus 226 ~~sf~~kkF~I~~~-d~~~~-~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~ 303 (472)
.+.|+++.|.-.+. ....+ +..++..|++.|++.|+++|+.++|++|||| ++|+++|||+++.|.++|+....|+|+
T Consensus 74 ~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal-~~q~~~Gd~~~~~~~~~~l~~~~~lP~ 152 (294)
T 1ef1_A 74 LFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASY-AVQSKYGDFNKEVHKSGYLAGDKLLPQ 152 (294)
T ss_dssp EEEEEESSCCSCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH-HHHHHHCSCCTTTSCTTTTTTCCCSCH
T ss_pred EEEEEEEEECCChHHhhccHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHH-HHHHHhCCCCccccChhhccccccCCH
Confidence 37778776644443 22222 3345569999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCcccc
Q psy586 304 RVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMR 371 (472)
Q Consensus 304 ~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~ 371 (472)
+++++++|+++.|+++|.+.|++++||||++|+++||++|++|++||+++|+|+ ..||.++..+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~v~~~~~k~~ 232 (294)
T 1ef1_A 153 RVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLT 232 (294)
T ss_dssp HHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEEEEETTCSSS
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEEEEeCCCccc
Confidence 999999999999999999999999999999999999999999999999999984 34666665555556
Q ss_pred ccCCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 372 RRKPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 372 ~~~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
+...|+|++|+++||.+++|.|+..++
T Consensus 233 ~~~~f~w~~I~~~~~~~~~f~i~~~~~ 259 (294)
T 1ef1_A 233 PKIGFPWSEIRNISFNDKKFVIKPIDK 259 (294)
T ss_dssp CSEEEEGGGEEEEEEETTEEEEEESSS
T ss_pred cceEEEcccceEeeecCCEEEEEEccC
Confidence 667899999999999999999998864
No 16
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.95 E-value=2.6e-29 Score=252.20 Aligned_cols=172 Identities=41% Similarity=0.614 Sum_probs=147.6
Q ss_pred ceeecceeeEEEec-CCCCC-ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCCh
Q psy586 226 HISFDDKKFIIKPV-DKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQ 303 (472)
Q Consensus 226 ~~sf~~kkF~I~~~-d~~~~-~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~ 303 (472)
.+.|+++.|.-.+. ....+ +..+++.|++.|+++|+++|+.++|++|||| ++|+++|||+++.|.++|+....|+|+
T Consensus 94 ~l~fr~kf~~~~~~~~l~~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal-~~Qa~~Gd~~~~~~~~~~~~~~~~lP~ 172 (314)
T 1h4r_A 94 TFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASY-AVQAKYGDYDPSVHKRGFLAQEELLPK 172 (314)
T ss_dssp EEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH-HHHHHHCSCCTTTSCTTTTTTCCCSCH
T ss_pred EEEEEEEEecCCchhhhcCHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHH-HHHHHHCCCCccccchhhcchhhcCCH
Confidence 36777775554442 22222 3345568999999999999999999999999 999999999999999999999999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCcccc
Q psy586 304 RVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMR 371 (472)
Q Consensus 304 ~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~ 371 (472)
+++++++++++.|+++|.+.|+++.||||++|+++||++|++|++||+++|+|+ ..||.++..+...+
T Consensus 173 ~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI~~~Gi~v~~~~~k~~ 252 (314)
T 1h4r_A 173 RVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLT 252 (314)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEECSSEEEEECTTCSSS
T ss_pred HHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEEeCCceEEEeCCCCcc
Confidence 999999999999999999999999999999999999999999999999999994 34566665444444
Q ss_pred ccCCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 372 RRKPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 372 ~~~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
+..+|+|++|.+++|++++|.|+..+.
T Consensus 253 ~~~~f~w~~I~~~~~~~~~f~i~~~~~ 279 (314)
T 1h4r_A 253 PKISFPWNEIRNISYSDKEFTIKPLDK 279 (314)
T ss_dssp CSEEEEGGGEEEEEEETTEEEEEESST
T ss_pred cceEEecccceEEEeeCCEEEEEEcCC
Confidence 556899999999999999999998754
No 17
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.94 E-value=1.5e-29 Score=251.86 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=136.3
Q ss_pred ceeecceeeEEEecCCCCC-ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChh
Q psy586 226 HISFDDKKFIIKPVDKSSP-NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQR 304 (472)
Q Consensus 226 ~~sf~~kkF~I~~~d~~~~-~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~ 304 (472)
.+.|+++.|.-.+.....+ +..+++.|++.|+++|+++|+.++|++|||| ++|+++|||+++.|.++|++...++|.+
T Consensus 89 ~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAAl-~~Qae~Gd~~~~~~~~~yl~~~~~~P~~ 167 (296)
T 3qij_A 89 NFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSY-TIQSELGDYDPELHGVDYVSDFKLAPNQ 167 (296)
T ss_dssp EEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHH-HHHHHHCSCCHHHHTTCCCTTSCCSSSC
T ss_pred EEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHHhcCCCCccccchhhCcHhhcCCcC
Confidence 3788877665555433222 2234458999999999999999999999999 9999999999999999999999999987
Q ss_pred hhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecc------------eeeeEEeccCccccc
Q psy586 305 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPIS------------ILDLCIGNHDLFMRR 372 (472)
Q Consensus 305 ~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~------------~~gi~i~~~~~~~~~ 372 (472)
.+.|+++|.++|++++||||++|+++||++|++|++|||++|+|+ ..||.++... ++
T Consensus 168 --------~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi~v~~~~---~k 236 (296)
T 3qij_A 168 --------TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDK---LR 236 (296)
T ss_dssp --------CHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEEEEEETT---EE
T ss_pred --------HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeEEEEeCC---Ce
Confidence 678999999999999999999999999999999999999999984 3455666433 23
Q ss_pred cCCCCHHHHHHHhhhhhhhhhhhhH
Q psy586 373 RKPDTMEIQQMKSQAKEEKSRRQIE 397 (472)
Q Consensus 373 ~~~f~w~~i~~~s~~rk~f~i~~~~ 397 (472)
..+|+|++|.++||++++|.|+...
T Consensus 237 l~~f~w~~I~~~s~~~k~F~i~~~~ 261 (296)
T 3qij_A 237 INRFPWPKVLKISYKRSSFFIKIRP 261 (296)
T ss_dssp EEEEEGGGEEEEEEETTEEEEEEC-
T ss_pred EEEEEhhhcCEEEecCCEEEEEEec
Confidence 5789999999999999999999773
No 18
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.91 E-value=1.5e-25 Score=229.78 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=133.7
Q ss_pred eeecceeeEEEecCC-CC-CceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChh
Q psy586 227 ISFDDKKFIIKPVDK-SS-PNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQR 304 (472)
Q Consensus 227 ~sf~~kkF~I~~~d~-~~-~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~ 304 (472)
+.|++|.|...+... .. .+..+++.|++.|++.|+++|+.++|++|||| ++|+++|||+++.|.++|+....|+|++
T Consensus 162 l~frvKf~~~d~~~~~~D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl-~~qae~Gd~~~~~~~~~~~~l~~~lP~~ 240 (371)
T 3ivf_A 162 LLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGF-QCQIQFGPHNEQKHKAGFLDLKDFLPKE 240 (371)
T ss_dssp EEEEECCCCBCSSCBTTCHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHHHHCSCCTTTSCTTCSCGGGTSCGG
T ss_pred EEEEEEEecCCccccCCCHHHHHHHHHHhhHHHhCceeecCHHHHHHHHHH-HHHHHhCCCChhhcccchhcccccCCHH
Confidence 677777554333321 12 23446669999999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeeccee--e------eEEe--ccCccc----
Q psy586 305 VIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISIL--D------LCIG--NHDLFM---- 370 (472)
Q Consensus 305 ~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~--g------i~i~--~~~~~~---- 370 (472)
++.. .. +++|.+.|++++|+||++|+.+||++|++|++||+++|+|+.. | +.+| ..++.+
T Consensus 241 ~~~~-----~~-e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~ 314 (371)
T 3ivf_A 241 YVKQ-----KG-ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEK 314 (371)
T ss_dssp GTTS-----CH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEEETT
T ss_pred HhCc-----hH-HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCC
Confidence 8862 22 8899999999999999999999999999999999999999411 1 2333 222211
Q ss_pred --cccCCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 371 --RRRKPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 371 --~~~~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
....+|+|++|.++++.++.|.|+..+.
T Consensus 315 ~k~~l~~~~~~~I~~~~~~~~~f~I~~~~~ 344 (371)
T 3ivf_A 315 TKEVIQEWSLTNIKRWAASPKSFTLDFGDY 344 (371)
T ss_dssp TCCEEEEEEGGGCCEEEEETTEEEEECGGG
T ss_pred CCceEEeeehhheeeeecCCCEEEEEECCc
Confidence 2344799999999999999999999865
No 19
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=99.90 E-value=4.8e-25 Score=207.67 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=124.8
Q ss_pred eeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHH
Q psy586 246 FIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYA 325 (472)
Q Consensus 246 ~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~ 325 (472)
..++..|++.|+++|+++|+.++++.|||| ++|+++|||+++.|.++|+....|+|+++++.. . +++|.+.|+
T Consensus 18 ~~l~y~Q~~~dil~g~~~~~~~~a~~Laal-~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~-----~-~~~i~~~~~ 90 (206)
T 1mix_A 18 LNLLYVQARDDILNGSHPVSFDKACEFAGY-QCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK-----G-ERKIFMAHK 90 (206)
T ss_dssp HHHHHHHHHHHHHTTSSCCCHHHHHHHHHH-HHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTC-----C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCccccCHHHHHHHHHH-hhhheecCCCcccccCCccchHhhCCHHHhhcc-----c-HHHHHHHHH
Confidence 345568999999999999999999999999 999999999999999999999999999988733 2 899999999
Q ss_pred hccCCChhHHHHHHHHHhhhccccCcceeeccee--------eeEEe--ccCccc------cccCCCCHHHHHHHhhhhh
Q psy586 326 DHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISIL--------DLCIG--NHDLFM------RRRKPDTMEIQQMKSQAKE 389 (472)
Q Consensus 326 ~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~--------gi~i~--~~~~~~------~~~~~f~w~~i~~~s~~rk 389 (472)
+++|||+++|+++||++|++|++||+++|+|+.. .+.+| ..++.+ ....+|+|++|+++++.++
T Consensus 91 ~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~~~I~~~~~~~~ 170 (206)
T 1mix_A 91 NCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPK 170 (206)
T ss_dssp HTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEECSS
T ss_pred HccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeehhHeeecccCCC
Confidence 9999999999999999999999999999998421 23333 122211 1234799999999999999
Q ss_pred hhhhhhhHH
Q psy586 390 EKSRRQIER 398 (472)
Q Consensus 390 ~f~i~~~~~ 398 (472)
+|.|+..+.
T Consensus 171 ~f~i~~~~~ 179 (206)
T 1mix_A 171 SFTLDFGDY 179 (206)
T ss_dssp EEEEECGGG
T ss_pred EEEEEeCcc
Confidence 999988865
No 20
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=99.90 E-value=3.5e-25 Score=211.38 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=124.8
Q ss_pred eeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHH
Q psy586 246 FIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYA 325 (472)
Q Consensus 246 ~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~ 325 (472)
+.+++.|++.|+++|+++|+.++|++|||| ++|+++|||+++.|.++|+....|+|+++++ ..++++|.+.|+
T Consensus 29 l~l~ylQ~~~dil~G~~~~~~e~a~~LAal-~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~------~~~~~~I~~~h~ 101 (222)
T 4f7g_A 29 LNLLYVQARDDILNGSHPVSFDKACEFAGF-QCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK------QKGERKIFQAHK 101 (222)
T ss_dssp HHHHHHHHHHHHHTTSSCCCHHHHHHHHHH-HHHHHHCSCCTTTSCSSCSCGGGTSCGGGGG------GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHHHH-HHHHHHCCCCchhcccCccchhhccCHHHHh------hhhHHHHHHHHH
Confidence 345669999999999999999999999999 9999999999999999999999999999886 335889999999
Q ss_pred hccCCChhHHHHHHHHHhhhccccCcceeeccee--------eeEEe-c-cCcc------ccccCCCCHHHHHHHhhhhh
Q psy586 326 DHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISIL--------DLCIG-N-HDLF------MRRRKPDTMEIQQMKSQAKE 389 (472)
Q Consensus 326 ~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~--------gi~i~-~-~~~~------~~~~~~f~w~~i~~~s~~rk 389 (472)
+++|+|+++|+++||++|++|++||+++|+|+.. .+.+| + .++. ......|+|++|.++++.++
T Consensus 102 ~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~~~~~~~~ 181 (222)
T 4f7g_A 102 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPK 181 (222)
T ss_dssp TTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCCEEEECSS
T ss_pred hccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHeeeeccCCC
Confidence 9999999999999999999999999999998421 23333 1 1211 12344789999999999999
Q ss_pred hhhhhhhHH
Q psy586 390 EKSRRQIER 398 (472)
Q Consensus 390 ~f~i~~~~~ 398 (472)
.|.|+..+.
T Consensus 182 ~f~I~~~~~ 190 (222)
T 4f7g_A 182 SFTLDFGDY 190 (222)
T ss_dssp EEEEECCTT
T ss_pred EEEEEECCc
Confidence 999988755
No 21
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=99.82 E-value=2.8e-22 Score=201.71 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=125.0
Q ss_pred eeecceeeEEEec--CCCC-CceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCccc---cccc
Q psy586 227 ISFDDKKFIIKPV--DKSS-PNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLA---SEDL 300 (472)
Q Consensus 227 ~sf~~kkF~I~~~--d~~~-~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~---~~~~ 300 (472)
+.|+++.|..... .... .+..+++.|++.+++.|+++|+.+++++|||| ++|+++|||+++.|.++|++ ...|
T Consensus 92 l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl-~~q~e~Gd~~~~~~~~~~l~~~~l~~~ 170 (322)
T 4dxa_B 92 LFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASL-LLQIVYGNYESKKHKQGFLNEENLKSI 170 (322)
T ss_dssp EEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH-HHHHHHCSCCHHHHSSSCSCHHHHTTT
T ss_pred EEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHH-HHHHHhCCCCcccccccccchhhhhhh
Confidence 5566655554211 1222 22335558999999999999999999999999 99999999999999999997 4689
Q ss_pred CChhhhhhhcCChhHHHHHHHHHHHhc---cCCChh--HHHHHHHHHhhhccccCcceeecce-----------------
Q psy586 301 LPQRVIDQYQMTPEMWEDRIKIWYADH---RGMSRD--EAEMEYLKIAQDLDMYGVNYFPISI----------------- 358 (472)
Q Consensus 301 lP~~~~~~~~~~~~~~~~~I~~~h~~~---~G~s~~--eAe~~yL~~a~~L~~YGv~~~~v~~----------------- 358 (472)
+|.++++. .++.|+++|.+.|+++ .|||++ +|+++||++|++|++|||++|.|+.
T Consensus 171 lP~~~~~~---~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~Lg 247 (322)
T 4dxa_B 171 VPVTKLKS---KAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVG 247 (322)
T ss_dssp SCTTTTTT---TGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEEEE
T ss_pred CCHHHHhc---CHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEEEE
Confidence 99998874 3568999999999999 999985 5699999999999999999999851
Q ss_pred ---eeeEEeccCcc----ccccCCCCHHHHHHHhhhhhhhhhhhhHH
Q psy586 359 ---LDLCIGNHDLF----MRRRKPDTMEIQQMKSQAKEEKSRRQIER 398 (472)
Q Consensus 359 ---~gi~i~~~~~~----~~~~~~f~w~~i~~~s~~rk~f~i~~~~~ 398 (472)
.||+++..... ..+-..++|+ +++..+.|.|+..++
T Consensus 248 V~~~Gv~v~~~~tk~~l~~~~~~~isw~----~s~~~~~f~i~~~~~ 290 (322)
T 4dxa_B 248 VNIKGLHLLNMETKALLISLKYGCFMWQ----LGDTDTCFQIHSMEN 290 (322)
T ss_dssp ECSSEEEEEETTTCCEEEEEETTSEEEE----ECSSTTEEEEEESSS
T ss_pred EccCceEEEcCCCceeeeccccceeEEe----ecCCCCEEEEEECCC
Confidence 23344422211 1233445676 667888999998864
No 22
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.75 E-value=1.2e-20 Score=205.53 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=125.7
Q ss_pred eeecceeeEEEecCC-CCC-ceeeehhhhhhhhhcCcccCCCc-chhhhhhhcchhhhhCCCCCCCCCCCcccccccCCh
Q psy586 227 ISFDDKKFIIKPVDK-SSP-NFIFFSLKVRMNKLYGDYDDSTY-KPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQ 303 (472)
Q Consensus 227 ~sf~~kkF~I~~~d~-~~~-~~vF~t~q~r~~~l~g~l~c~~~-~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~ 303 (472)
+.|+++.|. ...+. ..+ ...+++.|++.|++.|+++|+.+ ++++|||| ++|+++|||++..+..+. ...|+|.
T Consensus 350 L~FRvkff~-p~~~~~~d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl-~~Qae~Gd~~~~~~~~~~--L~~~lP~ 425 (655)
T 3pvl_A 350 LFFRKEVFT-PWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQ-QYFVDYGSEMILERLLSL--VPTYIPD 425 (655)
T ss_dssp EEEEECCCC-TTCCGGGCHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHTTCCCHHHHHHH--HHHHSCG
T ss_pred EEEEEEEec-CCcccccCHHHHHHHHHHHhcccccCccCCChHHHHHHHHHH-HHHHHhCCCcchhhHHHH--HHHhCCH
Confidence 677766553 21211 111 22355599999999999999976 99999999 999999999875443333 3569999
Q ss_pred hhhhhhcCChhHHHHHHHHHHHhc----cCCChhHHHHHHHHHh-hhccccCcceeecce-----------------eee
Q psy586 304 RVIDQYQMTPEMWEDRIKIWYADH----RGMSRDEAEMEYLKIA-QDLDMYGVNYFPISI-----------------LDL 361 (472)
Q Consensus 304 ~~~~~~~~~~~~~~~~I~~~h~~~----~G~s~~eAe~~yL~~a-~~L~~YGv~~~~v~~-----------------~gi 361 (472)
++++.. .+.+.|+++|..+|++| +|||+.+|+++||++| ++|++||+.+|.|+. .||
T Consensus 426 ~~l~~~-~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV 504 (655)
T 3pvl_A 426 REITPL-KNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGV 504 (655)
T ss_dssp GGCCSS-SCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEE
T ss_pred HHHhcc-CCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCce
Confidence 988754 36899999999999999 9999999999999999 899999999999842 233
Q ss_pred EEeccCccccccCCCCHHHHHHHhhhh------hhhhhhhhH
Q psy586 362 CIGNHDLFMRRRKPDTMEIQQMKSQAK------EEKSRRQIE 397 (472)
Q Consensus 362 ~i~~~~~~~~~~~~f~w~~i~~~s~~r------k~f~i~~~~ 397 (472)
+++....+ ....|+|++|.++|+++ ++|.|...+
T Consensus 505 ~v~d~~~k--~ll~f~~~eI~~is~~~~~~~~~~~ftl~~~~ 544 (655)
T 3pvl_A 505 YFVDEQEQ--VLLELSFPEIMAVSSSRGTKMMAPSFTLATIK 544 (655)
T ss_dssp EEECTTCC--EEEEEEGGGEEEEEEECCCSSSCCEEEEEETT
T ss_pred EEEcCCCc--eEEEechhHceEEeccCcccccccEEEEEecc
Confidence 34432222 23479999999999998 688887653
No 23
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.72 E-value=5.8e-19 Score=181.09 Aligned_cols=157 Identities=12% Similarity=0.217 Sum_probs=120.0
Q ss_pred eeecceeeEEEecC---CCCCceeeehhhhhhhhhcCc-ccCCCcchhhhhhhcchhhhhCCCCCCCCC----CCccc--
Q psy586 227 ISFDDKKFIIKPVD---KSSPNFIFFSLKVRMNKLYGD-YDDSTYKPGMLASEDLLPQRYGDYDDSTYK----PGMLA-- 296 (472)
Q Consensus 227 ~sf~~kkF~I~~~d---~~~~~~vF~t~q~r~~~l~g~-l~c~~~~~~~Las~~~~Qae~GDy~~~~~~----~~yl~-- 296 (472)
+.|+.++|.-.+.. .+..++.|+..|++.|++.|+ ++|+.++|+.||+| ++|++||||+++.+. .+|+.
T Consensus 92 l~fRvrF~~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LAaL-~~q~~~gD~~~~~~~~k~~~~~l~k~ 170 (375)
T 2al6_A 92 YELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCL-EIRRSYGEMRGNALEKKSNYEVLEKD 170 (375)
T ss_dssp EEEEECCCCTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-HHHHHTTTSCTTGGGSHHHHHHHHHT
T ss_pred EEEEEEEecCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHH-HHHHHhhhccchhhcccCCHHHhhhc
Confidence 56666544332321 112245677799999999999 78999999999999 999999999866332 34554
Q ss_pred --ccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecce-------eeeEEec-c
Q psy586 297 --SEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISI-------LDLCIGN-H 366 (472)
Q Consensus 297 --~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~-------~gi~i~~-~ 366 (472)
...|+|++++++. ....|.++|...|+++.|||+.+|+++||+++++|++||+++|.|+. .-+.+|. .
T Consensus 171 ~~l~~flP~~~~~~~--~~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~~~~~~~l~lg~~~ 248 (375)
T 2al6_A 171 VGLRRFFPKSLLDSV--KAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE 248 (375)
T ss_dssp TCGGGTSCHHHHHSS--CHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSSSCEEEEEEEETTT
T ss_pred ccHHHhCCHHHHHHh--ChHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEEEeecCCCCcceEEEEecCC
Confidence 4599999999754 47889999999999999999999999999999999999999999842 1233332 2
Q ss_pred Ccc------ccccCCCCHHHHHHHhh
Q psy586 367 DLF------MRRRKPDTMEIQQMKSQ 386 (472)
Q Consensus 367 ~~~------~~~~~~f~w~~i~~~s~ 386 (472)
++. ..+...++|++|.++++
T Consensus 249 GI~~~~~~~~~~~~~~~f~~I~~i~~ 274 (375)
T 2al6_A 249 GISYLTDKGANPTHLADFNQVQTIQY 274 (375)
T ss_dssp EEEEESSTTSCEEEEECGGGEEEEEE
T ss_pred CEEEEeCCCCceEEEechhHccEEEE
Confidence 222 23345789999999965
No 24
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.67 E-value=4.3e-18 Score=183.22 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=122.7
Q ss_pred eeecceeeEEEecCCCCC--ceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChh
Q psy586 227 ISFDDKKFIIKPVDKSSP--NFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQR 304 (472)
Q Consensus 227 ~sf~~kkF~I~~~d~~~~--~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~ 304 (472)
+.|+.+ |...+.+.... ...+++.|++.|++.|+++|+.++++.|||| ++|+++|||++..+.. ....|+|.+
T Consensus 301 l~fR~~-ff~~~~~~~~d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl-~lQ~~~GD~~~~~~~~---~l~~~lP~~ 375 (555)
T 3au4_A 301 FYFKLY-CFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAAL-RLQYLQGDYTLHAAIP---PLEEVYSLQ 375 (555)
T ss_dssp EEEEEE-ECSCCTTCCTTSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHH-HHHHHHCSCCTTCCCC---CGGGTSCCH
T ss_pred EEEEEE-eecCcccCCcchHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHHcCCCccccchh---hhhhhCCHH
Confidence 677655 44444433222 2346669999999999999999999999999 9999999999864322 346899998
Q ss_pred hhhhh----------------------cCChhHH--------HHHHHHHHHhccCCChhHHHHHHHHHhhhccccCccee
Q psy586 305 VIDQY----------------------QMTPEMW--------EDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYF 354 (472)
Q Consensus 305 ~~~~~----------------------~~~~~~~--------~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~ 354 (472)
++... +++.+.| +++|.+.|+.++|||+.+|+++||++|++|++||+++|
T Consensus 376 ~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F 455 (555)
T 3au4_A 376 RLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLF 455 (555)
T ss_dssp HHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEE
T ss_pred HhhhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcCceEE
Confidence 76530 0123444 89999999999999999999999999999999999999
Q ss_pred eccee------eeEEe--ccCccc------cccCCCCHHHHHHHh-hhhhhhhhhhhHH
Q psy586 355 PISIL------DLCIG--NHDLFM------RRRKPDTMEIQQMKS-QAKEEKSRRQIER 398 (472)
Q Consensus 355 ~v~~~------gi~i~--~~~~~~------~~~~~f~w~~i~~~s-~~rk~f~i~~~~~ 398 (472)
+|+.. .+.+| ..++.+ ....+|+|++|.+++ +.++.|.|...++
T Consensus 456 ~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~~f~i~~~~~ 514 (555)
T 3au4_A 456 DVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVVDER 514 (555)
T ss_dssp EEEEEESSSCSEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEEETTEEEEEETTE
T ss_pred EEEecCCCCCceEEEEEcccceEEECCCCCeeEEEEEhhheeeecCCCCCEEEEEECCc
Confidence 88421 12222 122211 223479999999888 4677888877654
No 25
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=99.37 E-value=3.5e-14 Score=145.89 Aligned_cols=141 Identities=11% Similarity=0.184 Sum_probs=112.8
Q ss_pred ceeeehhhhhhhhhcCc-ccCCCcchhhhhhhcchhhhhCCCCCCCCC----CCc----ccccccCChhhhhhhcCChhH
Q psy586 245 NFIFFSLKVRMNKLYGD-YDDSTYKPGMLASEDLLPQRYGDYDDSTYK----PGM----LASEDLLPQRVIDQYQMTPEM 315 (472)
Q Consensus 245 ~~vF~t~q~r~~~l~g~-l~c~~~~~~~Las~~~~Qae~GDy~~~~~~----~~y----l~~~~~lP~~~~~~~~~~~~~ 315 (472)
.+.|+..|.+.|++.|. .+|+.++|..||++ .+|++|||++..... .++ +....|+|+.++.. +....
T Consensus 133 ~~~ylY~Q~r~D~l~g~~~~~~~e~al~LAaL-~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~~--ik~k~ 209 (392)
T 4eku_A 133 TLLYFYQQLRNDYMQRYASKVSEGMALQLGCL-ELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQEN--LKPKQ 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-HHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHHH--SCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHhh--cCHHH
Confidence 35567799999999998 78999999999999 999999999875422 233 34568999998874 45788
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecce-------eeeEEeccCccc------cccCCCCHHHHH
Q psy586 316 WEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISI-------LDLCIGNHDLFM------RRRKPDTMEIQQ 382 (472)
Q Consensus 316 ~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~-------~gi~i~~~~~~~------~~~~~f~w~~i~ 382 (472)
|+.+|...|+++.|+|+.+|++.||+++++|++||+++|+|+. ..+.||..++.. .+...++|++|.
T Consensus 210 ~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~~~k~~~~~~~~~f~~I~ 289 (392)
T 4eku_A 210 FRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPTCLAEFKQIR 289 (392)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEECSSCSCCEEEECGGGBC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEEEEEeccCCcceeEEEEcCCcEEEECCCCCceeEEechHHce
Confidence 9999999999999999999999999999999999999999852 124455433332 123467999999
Q ss_pred HHhhhh
Q psy586 383 MKSQAK 388 (472)
Q Consensus 383 ~~s~~r 388 (472)
+++..+
T Consensus 290 ~Is~~~ 295 (392)
T 4eku_A 290 SIRCLP 295 (392)
T ss_dssp CCCEEE
T ss_pred EEEEEe
Confidence 997644
No 26
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.22 E-value=2.5e-12 Score=140.89 Aligned_cols=158 Identities=12% Similarity=0.219 Sum_probs=119.2
Q ss_pred eeecceeeEEEecCC---CCCceeeehhhhhhhhhcCccc-CCCcchhhhhhhcchhhhhCCCCCCCC----CCCc----
Q psy586 227 ISFDDKKFIIKPVDK---SSPNFIFFSLKVRMNKLYGDYD-DSTYKPGMLASEDLLPQRYGDYDDSTY----KPGM---- 294 (472)
Q Consensus 227 ~sf~~kkF~I~~~d~---~~~~~vF~t~q~r~~~l~g~l~-c~~~~~~~Las~~~~Qae~GDy~~~~~----~~~y---- 294 (472)
+.|+.++|.-.+.+. +..++.|+..|+|.|+++|+++ |+.++|+.||++ .+|+.||||+.+.- ..++
T Consensus 92 ~~~rvrf~p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La~l-~~~~~~~d~~~~a~~~~~~~~~~~k~ 170 (656)
T 2j0j_A 92 YELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCL-EIRRSYGEMRGNALEKKSNYEVLEKD 170 (656)
T ss_dssp EEEEECCCCTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH-HHHHHTTTSCTTGGGSHHHHHHHHHT
T ss_pred EEEEEEEcCCCHHHHHhccHHHHHHHHHHHHHHHHhcccccccHhHHHHHHHH-HHHHHhhhccchhhhcCCCHHHHHhh
Confidence 555555444434332 1224556779999999999995 999999999999 99999999966521 1223
Q ss_pred ccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhccccCcceeecce-------eeeEEecc-
Q psy586 295 LASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISI-------LDLCIGNH- 366 (472)
Q Consensus 295 l~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~-------~gi~i~~~- 366 (472)
+....|+|+.+++.. ....+.++|...|+++.|+++.+|+++||+.++.|++||++.|+++. ..|.||+.
T Consensus 171 ~~~~~fiP~~~~~~~--~~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~~~~~l~vg~~~ 248 (656)
T 2j0j_A 171 VGLRRFFPKSLLDSV--KAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE 248 (656)
T ss_dssp TTGGGTSCHHHHHHS--CHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSEEEEEEEEETTT
T ss_pred ccHHHhCCHHHHHHh--hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeeccCCCCcccEEEEECCCC
Confidence 334589999999755 46788999999999999999999999999999999999999999842 44666653
Q ss_pred Ccccc------ccCCCCHHHHHHHhhh
Q psy586 367 DLFMR------RRKPDTMEIQQMKSQA 387 (472)
Q Consensus 367 ~~~~~------~~~~f~w~~i~~~s~~ 387 (472)
++... +.....|++|..|+..
T Consensus 249 GI~~~~~~~~~~~~~~~f~~I~~I~~~ 275 (656)
T 2j0j_A 249 GISYLTDKGANPTHLADFNQVQTIQYS 275 (656)
T ss_dssp EEEECCSSSSCCEEEECGGGEEEBCEE
T ss_pred CeEEECCCCCCceecccccceeEEEEe
Confidence 33322 1224588899988765
No 27
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.60 E-value=8.9e-05 Score=63.55 Aligned_cols=65 Identities=20% Similarity=0.409 Sum_probs=52.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcC---------------------------------CCcccccccchhhhcc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDN---------------------------------KGFIAWLKLDKKVQDQ 47 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~---------------------------------~~~~~wL~~~kkl~~q 47 (472)
++.|+.++...||.++||...+.|+|..... +....|||.++++.+|
T Consensus 30 ~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srtL~EQ 109 (128)
T 2kc2_A 30 DSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQ 109 (128)
T ss_dssp ECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSCHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCcHHHc
Confidence 3689999999999999999777789986432 1124799999999999
Q ss_pred CccCCCceeEEEEeeeeccC
Q psy586 48 GISNQCTTPFMFLAKFYAED 67 (472)
Q Consensus 48 ~~~~~~~~~l~fr~kfy~~~ 67 (472)
++..+. ++.+|.|||..|
T Consensus 110 GI~e~~--tllLRrKfffsd 127 (128)
T 2kc2_A 110 GVEEHE--TLLLRRKFFYSD 127 (128)
T ss_dssp TCCTTS--EEEEEESSCCCC
T ss_pred CCCCCC--EEEEEEEEeccC
Confidence 988665 588888988765
No 28
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=97.49 E-value=0.00043 Score=55.61 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhh
Q psy586 79 HLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADH 158 (472)
Q Consensus 79 ~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~ 158 (472)
.--|.++...|-.-.-..+.++-+.|=||--||..||++.. .|++++ +.. ...| ..|+++
T Consensus 5 ~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~--~Pg~~d--------~~~-----~aKw-----~AW~~l 64 (89)
T 3epy_A 5 QADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA--CPGMLD--------LKG-----KAKW-----EAWNLK 64 (89)
T ss_dssp HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC--CTTTTC--------HHH-----HHHH-----HHHHTT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCC--CCcccc--------hHH-----HHHH-----HHHHHh
Confidence 34577888887766656778999999999999999999843 455542 111 1223 358899
Q ss_pred cCCChHHHHHHHHHHHhcc-cCCCc
Q psy586 159 RGMSRDEAEMEYLKIAQDL-DMYGV 182 (472)
Q Consensus 159 ~g~s~~eA~~~yLkiaq~l-~~yG~ 182 (472)
+|||+++||..|++++.++ |.||.
T Consensus 65 ~g~s~eeA~~~Yi~~v~~l~~ky~~ 89 (89)
T 3epy_A 65 KGLSTEDATSAYISKAKELIEKYGI 89 (89)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999886 66763
No 29
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=97.49 E-value=0.00045 Score=55.31 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=59.4
Q ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q psy586 82 FLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGM 161 (472)
Q Consensus 82 ylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~ 161 (472)
|.++...|-+-.-..+.++-+.|=||--||..||++.. .|++++ +.. +.=-+.|++++||
T Consensus 6 F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~--~Pg~~d--------~~~----------~aKw~AW~~l~gm 65 (87)
T 2cb8_A 6 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTE--RPGMLD--------FTG----------KAKWDAWNELKGT 65 (87)
T ss_dssp HHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC--CCCTTC--------HHH----------HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCC--CCCccc--------HHH----------HHHHHHHHHcCCC
Confidence 56666666554445688999999999999999999843 456552 111 1223568999999
Q ss_pred ChHHHHHHHHHHHhcc-cCCC
Q psy586 162 SRDEAEMEYLKIAQDL-DMYG 181 (472)
Q Consensus 162 s~~eA~~~yLkiaq~l-~~yG 181 (472)
|+++||..|++++.++ +.||
T Consensus 66 s~eeA~~~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 66 SKEDAMKAYINKVEELKKKYG 86 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999875 5565
No 30
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=97.45 E-value=0.00091 Score=53.74 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccc--cccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhh
Q psy586 81 FFLQVKQAILSMD--IYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADH 158 (472)
Q Consensus 81 lylQvk~~iL~g~--~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~ 158 (472)
-|..+...|-.-. ...+.++-+.|=||--||..||++.. .|++++ +.. +.=-..|+++
T Consensus 5 ~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~--~Pg~~d--------~~~----------~aKw~AW~~l 64 (89)
T 1hbk_A 5 VFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK--EPSAHK--------YID----------RKKYEAWKSV 64 (89)
T ss_dssp HHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSC--CCCTTS--------HHH----------HHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCC--CCCccC--------HHh----------HHHHHHHHHh
Confidence 3556666655544 56788999999999999999999753 455541 111 1223458999
Q ss_pred cCCChHHHHHHHHHHHhcc-cCCC
Q psy586 159 RGMSRDEAEMEYLKIAQDL-DMYG 181 (472)
Q Consensus 159 ~g~s~~eA~~~yLkiaq~l-~~yG 181 (472)
+|||+++||..|++++.++ |.||
T Consensus 65 ~gms~eeA~~~YI~~v~~l~~~~~ 88 (89)
T 1hbk_A 65 ENLNREDAQKRYVDIVSEIFPYWQ 88 (89)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHccccc
Confidence 9999999999999999885 6665
No 31
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00056 Score=54.60 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=57.9
Q ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q psy586 82 FLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGM 161 (472)
Q Consensus 82 ylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g~ 161 (472)
|.++...|-+-.-..+.++-+.|=||--||..||++.. .|++++ +.. +.=-..|++++||
T Consensus 5 F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~--~Pg~~d--------~~~----------raKw~AW~~l~gm 64 (86)
T 1st7_A 5 FEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKE--KPGIFN--------MKD----------RYKWEAWENLKGK 64 (86)
T ss_dssp HHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCC--CCCSSC--------HHH----------HHHHHHHHTTTTT
T ss_pred HHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCC--CCCccC--------HHH----------HHHHHHHHHcCCC
Confidence 55555555544445678999999999999999999843 456551 111 1223468999999
Q ss_pred ChHHHHHHHHHHHhcc-cCCC
Q psy586 162 SRDEAEMEYLKIAQDL-DMYG 181 (472)
Q Consensus 162 s~~eA~~~yLkiaq~l-~~yG 181 (472)
|+++||..|++++.++ |.||
T Consensus 65 s~eeA~~~YI~~v~~l~~~~~ 85 (86)
T 1st7_A 65 SQEDAEKEYIALVDQLIAKYS 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999875 5554
No 32
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.0025 Score=53.09 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
-|.++...|-.-.-..+.++-+.|=||--||..||++.. .|++++ +.. +.=-..|+++.|
T Consensus 11 ~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~--~Pg~~d--------~~~----------raKw~AW~~l~g 70 (109)
T 2cop_A 11 LFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTP--KPSFFD--------FEG----------KQKWEAWKALGD 70 (109)
T ss_dssp HHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSC--CCCSSC--------HHH----------HHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCC--CCCccC--------HHH----------HHHHHHHHHhcC
Confidence 466777766665555788999999999999999999863 456651 111 112345899999
Q ss_pred CChHHHHHHHHHHHhcc-cCCCceE
Q psy586 161 MSRDEAEMEYLKIAQDL-DMYGVNY 184 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l-~~yG~~~ 184 (472)
||+++||..|++++.++ |.|+...
T Consensus 71 ms~eeAm~~YI~lv~~l~~~~~~~~ 95 (109)
T 2cop_A 71 SSPSQAMQEYIAVVKKLDPGWNPQI 95 (109)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999886 6676443
No 33
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=97.14 E-value=0.00079 Score=54.74 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=58.6
Q ss_pred HHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 82 FLQVKQAILSMD-IYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 82 ylQvk~~iL~g~-~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
|.++...|-+-. ...+.++-+.|=||--||..||++.. .|++++. .. +.=-+.|++++|
T Consensus 14 F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~--~Pg~~d~--------~g----------raKw~AW~~l~g 73 (96)
T 2lbb_A 14 FDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKP--KPGMLQL--------QE----------KYKWEAWNALRG 73 (96)
T ss_dssp HHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCC--CCCSSCS--------HH----------HHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCC--CCCcccH--------Hh----------HHHHHHHHHhcC
Confidence 455555555444 45678899999999999999999853 4566521 11 122356899999
Q ss_pred CChHHHHHHHHHHHhcc-cCCC
Q psy586 161 MSRDEAEMEYLKIAQDL-DMYG 181 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l-~~yG 181 (472)
||+++||..|++++.++ |.||
T Consensus 74 mS~eeAm~~YI~lv~~l~~~~~ 95 (96)
T 2lbb_A 74 MSTESAKEAYVKLLDTLAPSWR 95 (96)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGT
T ss_pred CCHHHHHHHHHHHHHHHhchhc
Confidence 99999999999999875 6665
No 34
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0054 Score=51.57 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586 81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG 160 (472)
Q Consensus 81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g 160 (472)
-|.++...|-.-.-..+.++-+.|=||-=||..||++. ..|++++ +.. +.=-+.|+.++|
T Consensus 19 ~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~--~~Pg~~d--------~~g----------raKw~AW~~l~g 78 (116)
T 2cqu_A 19 DFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNM--PKPGVFD--------LIN----------KAKWDAWNALGS 78 (116)
T ss_dssp HHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCS--CCCCTTC--------HHH----------HHHHHHHHHHCS
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCC--CCCCccc--------HHH----------HHHHHHHHHhcC
Confidence 45666665554333457889999999999999999974 3456551 111 112345899999
Q ss_pred CChHHHHHHHHHHHhcc-cCCCc
Q psy586 161 MSRDEAEMEYLKIAQDL-DMYGV 182 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq~l-~~yG~ 182 (472)
||+++||..|++++..+ |.|+.
T Consensus 79 ms~eeAm~~YI~lv~~l~~~~~~ 101 (116)
T 2cqu_A 79 LPKEAARQNYVDLVSSLSPSLES 101 (116)
T ss_dssp CCHHHHHHHHHHHHHHHCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHcccccc
Confidence 99999999999999886 55654
No 35
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=96.69 E-value=0.0097 Score=49.22 Aligned_cols=77 Identities=23% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHHHhc----cccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHH
Q psy586 81 FFLQVKQAILS----MDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYA 156 (472)
Q Consensus 81 lylQvk~~iL~----g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~ 156 (472)
-|.++...|-. |.+..+.++-+.|=||--||..||++. ..|++++ +.. ...| ..|+
T Consensus 11 ~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~--~~Pg~~d--------~~~-----~aKw-----~AW~ 70 (106)
T 2wh5_A 11 QFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLV--PRPGFWD--------PIG-----RYKW-----DAWN 70 (106)
T ss_dssp HHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCS--CCCCTTC--------HHH-----HHHH-----HHHH
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCC--CCCCccc--------HHH-----HHHH-----HHHH
Confidence 35666655543 345678899999999999999999974 3455551 111 1123 4589
Q ss_pred hhcCCChHHHHHHHHHHHhcc
Q psy586 157 DHRGMSRDEAEMEYLKIAQDL 177 (472)
Q Consensus 157 ~~~g~s~~eA~~~yLkiaq~l 177 (472)
+++|||+++||..|++++..+
T Consensus 71 ~l~gms~eeA~~~YI~~v~~l 91 (106)
T 2wh5_A 71 SLGKMSREEAMSAYITEMKLV 91 (106)
T ss_dssp TTTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 36
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=96.51 E-value=0.015 Score=48.06 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=55.6
Q ss_pred HHHHHHHHhc----cccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHh
Q psy586 82 FLQVKQAILS----MDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYAD 157 (472)
Q Consensus 82 ylQvk~~iL~----g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~ 157 (472)
|.++...|-. |....+.++-+.|=||--||..||++.. .|++++ +.. ...| ..|++
T Consensus 8 F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~--~Pg~~d--------~~~-----raKw-----~AW~~ 67 (106)
T 3fp5_A 8 FDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS--RPGLMD--------FTG-----KAKW-----DAWKS 67 (106)
T ss_dssp HHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSC--CCCTTC--------HHH-----HHHH-----HHHHT
T ss_pred HHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCC--CCCccc--------hHH-----HHHH-----HHHHH
Confidence 5555555543 3356788999999999999999999854 455552 111 1223 36899
Q ss_pred hcCCChHHHHHHHHHHHhcc
Q psy586 158 HRGMSRDEAEMEYLKIAQDL 177 (472)
Q Consensus 158 ~~g~s~~eA~~~yLkiaq~l 177 (472)
++|||+++||..|++++..+
T Consensus 68 l~gmS~eeA~~~YI~~v~~l 87 (106)
T 3fp5_A 68 VEGTSKEVAYQKYVEKLLEI 87 (106)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 37
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=96.27 E-value=0.021 Score=48.05 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhc----cccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHH
Q psy586 78 QHLFFLQVKQAILS----MDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKI 153 (472)
Q Consensus 78 ~~LlylQvk~~iL~----g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~ 153 (472)
..--|.++...|-. |.+..+.++.+.|=||--||..||++.. .|++++. .. ...|.
T Consensus 24 Le~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~--~Pg~~d~--------~g-----raKw~----- 83 (119)
T 3flv_A 24 HETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLS--RPGFWDP--------IG-----RYKWD----- 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSC--CCCTTCH--------HH-----HHHHH-----
T ss_pred HHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCC--CCCccCH--------HH-----HHHHH-----
Confidence 34456666665543 4455688999999999999999999743 4565521 11 12243
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcc-cCCCc
Q psy586 154 WYADHRGMSRDEAEMEYLKIAQDL-DMYGV 182 (472)
Q Consensus 154 ~h~~~~g~s~~eA~~~yLkiaq~l-~~yG~ 182 (472)
.|++++|||+++||..|++++..+ +.|+.
T Consensus 84 AW~~l~gmS~eeAm~~YI~~v~~l~~~~~~ 113 (119)
T 3flv_A 84 AWSSLGDMTKEEAMIAYVEEMKKIIETMPM 113 (119)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 689999999999999999999875 55554
No 38
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.35 Score=38.25 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=34.0
Q ss_pred chhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc
Q psy586 277 LLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 347 (472)
Q Consensus 277 ~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~ 347 (472)
-=||..||++.. .|+.+. ++. ..| -.-+..+.|||+++|+-.|++.+..|.
T Consensus 31 yKQAt~Gd~~~~--~Pg~~d--------~~~---------raK-w~AW~~l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 31 YKQATVGDNDKE--KPGIFN--------MKD---------RYK-WEAWENLKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHHCSCCCC--CCCSSC--------HHH---------HHH-HHHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCC--CCCccC--------HHH---------HHH-HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 349999999843 333321 111 112 234667799999999999999887653
No 39
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=91.35 E-value=0.34 Score=38.53 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=36.7
Q ss_pred hhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc
Q psy586 270 GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 347 (472)
Q Consensus 270 ~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~ 347 (472)
..|=|| -=||..||++... |+.+. ++. ..| -.-++.+.|||+++|+-.|++.+..|.
T Consensus 28 L~LYal-yKQAt~Gd~~~~~--Pg~~d--------~~~---------~aK-w~AW~~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 28 LDLYKY-YKQSTIGNCNIKE--PSAHK--------YID---------RKK-YEAWKSVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHHH-HHHHHTCSCCSCC--CCTTS--------HHH---------HHH-HHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHhhcCCCCCCC--CCccC--------HHh---------HHH-HHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 333343 3499999998543 33221 111 111 234677899999999999999987763
No 40
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=90.64 E-value=0.42 Score=37.85 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=35.9
Q ss_pred chhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH-HHHHHhccCCChhHHHHHHHHHhhhcc-ccC
Q psy586 277 LLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI-KIWYADHRGMSRDEAEMEYLKIAQDLD-MYG 350 (472)
Q Consensus 277 ~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I-~~~h~~~~G~s~~eAe~~yL~~a~~L~-~YG 350 (472)
-=||..||++.. .|+++. +..+. -+-+..+.|||+++|+-.|++.+..|- .||
T Consensus 32 yKQAt~Gd~~~~--~Pg~~d-------------------~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 32 YKQATVGDINTE--RPGMLD-------------------FTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYG 86 (87)
T ss_dssp HHHHHTCSCCSC--CCCTTC-------------------HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhCCCCCC--CCCccc-------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 349999999843 344321 11121 245677899999999999999887653 454
No 41
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=90.27 E-value=0.41 Score=38.10 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=38.8
Q ss_pred hhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc-c
Q psy586 270 GMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD-M 348 (472)
Q Consensus 270 ~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~-~ 348 (472)
..|=|| -=||..||++.. .|+++. ++. ..|- .-+..+.|||+++|+-.|++.+..|. .
T Consensus 28 L~lYal-yKQAt~Gd~~~~--~Pg~~d--------~~~---------~aKw-~AW~~l~g~s~eeA~~~Yi~~v~~l~~k 86 (89)
T 3epy_A 28 KELYGL-YKQAIVGDINIA--CPGMLD--------LKG---------KAKW-EAWNLKKGLSTEDATSAYISKAKELIEK 86 (89)
T ss_dssp HHHHHH-HHHHHTCSCCSC--CTTTTC--------HHH---------HHHH-HHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhhCCCCCC--CCcccc--------hHH---------HHHH-HHHHHhhCCCHHHHHHHHHHHHHHHhhh
Confidence 334343 459999999854 333221 111 1122 34566899999999999999987664 5
Q ss_pred cCc
Q psy586 349 YGV 351 (472)
Q Consensus 349 YGv 351 (472)
||+
T Consensus 87 y~~ 89 (89)
T 3epy_A 87 YGI 89 (89)
T ss_dssp HCC
T ss_pred hcC
Confidence 663
No 42
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=89.70 E-value=0.65 Score=37.46 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=39.4
Q ss_pred CCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhh
Q psy586 265 STYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQ 344 (472)
Q Consensus 265 ~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~ 344 (472)
+.+.-..|=|| -=||..||++.. .|+++. ++. ..| -+-++.+.|||++||+-.|++.+.
T Consensus 30 s~~~~L~LYaL-yKQAt~Gd~~~~--~Pg~~d--------~~g---------raK-w~AW~~l~gmS~eeAm~~YI~lv~ 88 (96)
T 2lbb_A 30 SNDDKLCFYKY-YKQATVGDCNKP--KPGMLQ--------LQE---------KYK-WEAWNALRGMSTESAKEAYVKLLD 88 (96)
T ss_dssp CTTTTTHHHHH-HHHTTTSSCCCC--CCCSSC--------SHH---------HHH-HHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHhcCCCCCC--CCCccc--------HHh---------HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33334444444 459999999853 344331 111 111 245667899999999999999887
Q ss_pred hcc
Q psy586 345 DLD 347 (472)
Q Consensus 345 ~L~ 347 (472)
.|.
T Consensus 89 ~l~ 91 (96)
T 2lbb_A 89 TLA 91 (96)
T ss_dssp HHC
T ss_pred HHh
Confidence 663
No 43
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=88.99 E-value=0.66 Score=38.14 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=44.9
Q ss_pred CcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHH
Q psy586 260 GDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEY 339 (472)
Q Consensus 260 g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~y 339 (472)
|....+.+.-..|=|| -=||..||++.. .|+.+. ++. ..| -.-|+.+.|||+++|+-.|
T Consensus 26 g~~~ps~e~~L~LYaL-yKQAt~Gd~~~~--~Pg~~d--------~~~---------~aK-w~AW~~l~gms~eeA~~~Y 84 (106)
T 2wh5_A 26 GSYRPSYEEMLRFYSY-YKQATMGPCLVP--RPGFWD--------PIG---------RYK-WDAWNSLGKMSREEAMSAY 84 (106)
T ss_dssp CSCCCCHHHHHHHHHH-HHHHHHCSCCSC--CCCTTC--------HHH---------HHH-HHHHHTTTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-HhhhccCCCCCC--CCCccc--------HHH---------HHH-HHHHHHhcCCCHHHHHHHH
Confidence 3344455555555555 569999999843 333321 111 112 2346778999999999999
Q ss_pred HHHhhhccccCc
Q psy586 340 LKIAQDLDMYGV 351 (472)
Q Consensus 340 L~~a~~L~~YGv 351 (472)
++.+..|-.-.+
T Consensus 85 I~~v~~l~~k~~ 96 (106)
T 2wh5_A 85 ITEMKLVAQKVI 96 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999887654333
No 44
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=88.25 E-value=0.72 Score=38.65 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=45.5
Q ss_pred cCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH-HHHHHhccCCChhHHHH
Q psy586 259 YGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI-KIWYADHRGMSRDEAEM 337 (472)
Q Consensus 259 ~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I-~~~h~~~~G~s~~eAe~ 337 (472)
.|....+.+.-..|=|| -=||..||++.. .|+++. +..+. -.-|+.+.|||+++|+-
T Consensus 41 ~g~~~ps~d~~L~LYaL-yKQAT~Gd~~~~--~Pg~~d-------------------~~graKw~AW~~l~gmS~eeAm~ 98 (119)
T 3flv_A 41 NGSFQPTNEMMLKFYSF-YKQATEGPCKLS--RPGFWD-------------------PIGRYKWDAWSSLGDMTKEEAMI 98 (119)
T ss_dssp HSSCCCCHHHHHHHHHH-HHHHHTCSCCSC--CCCTTC-------------------HHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH-HHHHhcCCCCCC--CCCccC-------------------HHHHHHHHHHHHccCCCHHHHHH
Confidence 34444555555666565 569999999844 333321 11111 13567789999999999
Q ss_pred HHHHHhhhc-cccCc
Q psy586 338 EYLKIAQDL-DMYGV 351 (472)
Q Consensus 338 ~yL~~a~~L-~~YGv 351 (472)
.|++.+..| +.|++
T Consensus 99 ~YI~~v~~l~~~~~~ 113 (119)
T 3flv_A 99 AYVEEMKKIIETMPM 113 (119)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCCC
Confidence 999998654 44543
No 45
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.15 E-value=0.89 Score=37.53 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=36.8
Q ss_pred chhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc-ccC
Q psy586 277 LLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD-MYG 350 (472)
Q Consensus 277 ~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~-~YG 350 (472)
-=||..||++.. .|+++. ++. ..| -+-+..+.|||+++|+-.|++.+..|. .|+
T Consensus 38 yKQAt~Gd~~~~--~Pg~~d--------~~~---------raK-w~AW~~l~gms~eeAm~~YI~lv~~l~~~~~ 92 (109)
T 2cop_A 38 YKQVKVGNCNTP--KPSFFD--------FEG---------KQK-WEAWKALGDSSPSQAMQEYIAVVKKLDPGWN 92 (109)
T ss_dssp HHHHHTCSCCSC--CCCSSC--------HHH---------HHH-HHHHHSCTTCCHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHhhcCCCCCC--CCCccC--------HHH---------HHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 349999999864 344321 111 111 234677899999999999999988875 444
No 46
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=87.09 E-value=0.92 Score=37.25 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=41.0
Q ss_pred ccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHH-HHHHhccCCChhHHHHHHH
Q psy586 262 YDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIK-IWYADHRGMSRDEAEMEYL 340 (472)
Q Consensus 262 l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~-~~h~~~~G~s~~eAe~~yL 340 (472)
...+.+.-..|=|| -=||..||++.. .|+++. +..|.. .-|..+.|||+++|+-.|+
T Consensus 24 ~~ps~~~~L~LYal-yKQAt~Gd~~~~--~Pg~~d-------------------~~~raKw~AW~~l~gmS~eeA~~~YI 81 (106)
T 3fp5_A 24 IKPTQDEQLYFYKY-FKQATVGDVNIS--RPGLMD-------------------FTGKAKWDAWKSVEGTSKEVAYQKYV 81 (106)
T ss_dssp SCCCHHHHHHHHHH-HHHHHTCSCCSC--CCCTTC-------------------HHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHhcCCCCCC--CCCccc-------------------hHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 34444555555555 569999999854 333321 111211 3566779999999999999
Q ss_pred HHhhhc
Q psy586 341 KIAQDL 346 (472)
Q Consensus 341 ~~a~~L 346 (472)
+.+..|
T Consensus 82 ~~v~~l 87 (106)
T 3fp5_A 82 EKLLEI 87 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 47
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.72 E-value=1.4 Score=36.67 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHHHHHHHhccCCChhHHHHHHHHHhhhcc
Q psy586 278 LPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 347 (472)
Q Consensus 278 ~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~~~G~s~~eAe~~yL~~a~~L~ 347 (472)
=||..||++.. .|+++. ++. ..|- +-++.+.|||+++|+-.|++.+..|.
T Consensus 47 KQAt~Gd~~~~--~Pg~~d--------~~g---------raKw-~AW~~l~gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 47 KQATEGPCNMP--KPGVFD--------LIN---------KAKW-DAWNALGSLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp TTTTTCSCCSC--CCCTTC--------HHH---------HHHH-HHHHHHCSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCCCC--CCCccc--------HHH---------HHHH-HHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 49999999843 344321 111 1222 34666799999999999999988775
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.55 E-value=8.8 Score=30.97 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHhHHH
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSE------REAAEREKCAMEQRLVQYQE 463 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 463 (472)
...+.|.+--.+.+++.++++++..+++.|......+ ...||.+-+.+.+|+..+++
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555555567788888888888777776554433 33445555666666666554
No 49
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=82.55 E-value=2.5 Score=34.41 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=49.3
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLKV 253 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q~ 253 (472)
.+.+|=++..+|.+.++.+...+...||+..|++..+....|.+....+ ....|.|.+.+.
T Consensus 21 G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LRRyG~~~~~FsFEaGRrC~tG~G~f~F~~~~~ 84 (103)
T 1j0w_A 21 GECALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRDG 84 (103)
T ss_dssp EEEEEEECSSEEEEEESSSTTBEEEEEEGGGEEEEEECSSEEEEEECSSSSSCSEEEEEECSCH
T ss_pred ccEEEEECCCEEEEEecCCCCcceEEeeHHHHhhcCccCCEEEEEeCCCCCCCCcEEEEEcCCH
Confidence 4689999999999998776534689999999999999999999998543 234577777664
No 50
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.17 E-value=1.2 Score=36.24 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCC-Ccccccccchhhhcc--CccCCCceeEEEEeeeec
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQ--GISNQCTTPFMFLAKFYA 65 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~-~~~~wL~~~kkl~~q--~~~~~~~~~l~fr~kfy~ 65 (472)
+..|++|+++.++.+.++.....++|.-..++ +..+.+.....+.+. .|+.+..-+|.|+.+|+-
T Consensus 28 ~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~kr~~K 95 (100)
T 1wgr_A 28 AGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFRKNFAS 95 (100)
T ss_dssp TTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEECSCCSS
T ss_pred CCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEecchhc
Confidence 46899999999999999999999999866554 344556555555543 255667779999998764
No 51
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=79.10 E-value=11 Score=40.31 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQR 457 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (472)
+-|+..++.+|++...++++.+++|.-+..-+....+...++.++.|++++.+.++
T Consensus 490 ~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e 545 (592)
T 1f5n_A 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE 545 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666666555555555555555666666666655544433
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.65 E-value=17 Score=29.23 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHhHHH
Q psy586 408 REAAEREKCAMEQRLVQYQEEIRLANEALKCVKVS------EREAAEREKCAMEQRLVQYQE 463 (472)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 463 (472)
..+.+.+-..+.+++..++.++..+++.|...... ....||.+-+.+.+|+..++|
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33344444556677778888877777777554432 345566666777777766654
No 53
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=73.89 E-value=28 Score=30.14 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKC------------VKVSEREAAEREKCAMEQRLVQYQEEIRLAN 469 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (472)
+.++...+...++..|.|++-+.+++..+... ..+.++...++++.+++++..++...+...+
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666778888888888887666654 2356788888899999888888887775543
No 54
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.37 E-value=23 Score=28.92 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 441 VSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
.+.|+.+-.++.+++.+|..+|-++
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3467888888899999999888765
No 55
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=70.90 E-value=6.9 Score=33.02 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=47.4
Q ss_pred ceEEEecCCceEEEecCC---ccccceeeecccccceeecceeeEEEecCC---CCCceeeehhhh
Q psy586 194 DLWLGVTALGLNIYEKEN---KLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLKV 253 (472)
Q Consensus 194 ~~~LgV~~~GI~i~~~~~---k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q~ 253 (472)
+.+|-|+...|.+.+.+. ...+...|||..|++..+.+..|.++.... ....|.|.+.+.
T Consensus 26 ~y~L~vt~~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~d~~~FsFEaGRrC~tGeG~f~F~t~~~ 91 (127)
T 1p5t_A 26 SYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQG 91 (127)
T ss_dssp EEEEEECSSEEEEEEECTTTCSEEEEEEEEGGGEEEEEECSSEEEEEECTTSTTCSEEEEEECSCH
T ss_pred cEEEEEcCCEEEEEecCcccCCCcceEEEehHHhhhcCccCCEEEEEecCCCCCCCcEEEEEeCCH
Confidence 799999999999997542 223578899999999999999999998543 234577887764
No 56
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.08 E-value=35 Score=26.31 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 416 CAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
..+|..+++.+.....+...+......++.+..+.|.+++.++..||+=+
T Consensus 11 ~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 11 ESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555666666667777788888888888888654
No 57
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.48 E-value=6 Score=32.74 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=47.8
Q ss_pred ceEEEecCCceEEE-ecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhhhh
Q psy586 194 DLWLGVTALGLNIY-EKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLKVR 254 (472)
Q Consensus 194 ~~~LgV~~~GI~i~-~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q~r 254 (472)
+.+|=|...+|.++ +.+.+ .+...||+.-|++..+.++.|.++..-. ....|.|.+.+..
T Consensus 29 ~y~L~l~~~~l~L~~~~~~~-~~l~~Wpl~~LRryG~d~~~FsfEaGRrC~tGeG~f~F~t~~~~ 92 (113)
T 2dlw_A 29 SYTLRAGESALELWGGPEPG-TQLYDWPYRFLRRFGRDKVTFSFEAGRRCVSGEGNFEFETRQGN 92 (113)
T ss_dssp EEEEEECSSBEECCCSSSSC-CCSSCCBGGGCCCEEEETTEEEEEECSSCSSCSEEEEECCSTHH
T ss_pred cEEEEEcCCEEEEEecCCCC-CceEEEEhHHhhhcCccCCEEEEEecCCCCCCCCEEEEEcCCHH
Confidence 89999999999994 44545 5789999999999999999999998543 2346778876633
No 58
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.36 E-value=47 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
.+.++.+++++++.+...|+....+.. ++.......+.++..+.+..
T Consensus 40 aE~k~~eLEeeL~~v~~nlKsLE~see-kasqrEd~yEeqIk~L~~kL 86 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKSLEAQAE-KYSQKEDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 666788888888888877776655333 33333366666666666554
No 59
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=68.35 E-value=8.5 Score=31.48 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=46.7
Q ss_pred ceEEEecCCceEEEecCC---ccccceeeecccccceeecceeeEEEecCC---CCCceeeehhhh
Q psy586 194 DLWLGVTALGLNIYEKEN---KLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLKV 253 (472)
Q Consensus 194 ~~~LgV~~~GI~i~~~~~---k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q~ 253 (472)
+.+|-|....|.+.+.+. ...+...|||..|++..+.+..|.++.... ....|.|.+.+.
T Consensus 24 ~y~L~v~~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~d~~~FsFEaGRrc~tG~G~f~F~~~~~ 89 (107)
T 2v76_A 24 SYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQG 89 (107)
T ss_dssp EEEEEECSSEEEEEEEC----CEEEEEEEEGGGEEEEEECSSEEEEEECTTSTTCSEEEEEECSCH
T ss_pred cEEEEEcCCEEEEEecCccCCCCceeEEEEhHHhhhcCccCCEEEEEecCCCCCCCcEEEEEeCCH
Confidence 789999999999997532 223568899999999999999999998543 234577887764
No 60
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=68.18 E-value=18 Score=31.34 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeeccccc-ceeeccee------eEEEec
Q psy586 167 EMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIR-HISFDDKK------FIIKPV 239 (472)
Q Consensus 167 ~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~-~~sf~~kk------F~I~~~ 239 (472)
.+.||..+|.+...-... ...+++++|++.||.+.+.+.. .++...|-..|. -++|.+.. |.++..
T Consensus 42 ll~~ID~aQq~gkLP~~~------~~Edvi~svSkyGvkl~~~d~~-dvl~RipL~~I~~~v~YdDg~g~g~~vla~KT~ 114 (154)
T 4dx8_A 42 LINYIDVAQQDGKLPFVP------PEEEFIMGVSKYGIKVSTSDQY-DVLHRHALYLIIRMVCYDDGLGAGKSLLALKTT 114 (154)
T ss_dssp HHHHHHHHHHTTSSCSSC------CSCCEEEEEETTEEEEEETTSC-CEEEEEEGGGEEEEEEEECCSSSCCEEEEEEEE
T ss_pred HHHHHHHHHHhCcCCCCC------CcCeEEEEEeccCcEEEeccCc-ccccchhHHHhhhheeeccccccccEEEEEEec
Confidence 567888888754433222 2236999999999999987766 467889988888 77886554 567777
Q ss_pred CCCCCcee
Q psy586 240 DKSSPNFI 247 (472)
Q Consensus 240 d~~~~~~v 247 (472)
+..+..+.
T Consensus 115 ~~~~~~~~ 122 (154)
T 4dx8_A 115 DASNEEYS 122 (154)
T ss_dssp CTTSCCEE
T ss_pred CCCCceEE
Confidence 66666544
No 61
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=64.57 E-value=19 Score=30.33 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=50.3
Q ss_pred ceEEeee--ecCC---CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 182 VNYFPIS--NKKD---TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 182 ~~~F~vk--~~~~---~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
-+-|.|. +.++ .+.+|-|+...|.+++.+. +...|||..|++..+....|.+.-..+ ....|.|.+.+
T Consensus 11 ~~~F~V~~~~~~~~e~g~~~L~lt~~~L~L~~~~~---~~~~Wp~~~LRrYG~d~~~FsFEaGRRC~tGeGiF~F~t~~ 86 (129)
T 1xr0_B 11 RNKFKVINVDDDGNELGSGIMELTDTELILYTRKR---DSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCAR 86 (129)
T ss_dssp CCEEEEEEECSSCCCCCCEEEEECSSCEEEEETTT---EEEEECSTTEEEEEECSSEEEEEECSCSTTCSEEEEEECSC
T ss_pred cCEEEEEEeCCCCCcceeEEEEEecCEEEEEeCCC---CeeEcchHHhhhcCccCCEEEEEcCCCCCCCCcEEEEEcCC
Confidence 3456663 2333 5799999999999987544 357999999999999999999998543 23457777665
No 62
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=61.37 E-value=7.5 Score=30.75 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCC
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQC 53 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~ 53 (472)
|++|-.|+++..|+++|+. ..-++|.+-++ -||++-.+.=-+.+++.
T Consensus 28 p~t~L~~VL~eaC~K~gl~-~~~~~Lkh~~k-----~lDLSlpfRlsgLpnnA 74 (90)
T 2al3_A 28 PSTVLLQVLEDTCRRQDFN-PSEYDLKFQRT-----VLDLSLQWRFANLPNNA 74 (90)
T ss_dssp TTSBHHHHHHHHHHHTTCC-GGGCEEEETTE-----EESSSCBHHHHCCCSSC
T ss_pred CCCCHHHHHHHHHHHhCCC-hhhCeEEeCCE-----eccccceeEecCCCCCC
Confidence 7899999999999999995 55678877532 24555444433334433
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.15 E-value=55 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy586 418 MEQRLVQYQEEIRLANE---ALKCVKVSEREAAEREKCAMEQRLVQYQEEIR 466 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (472)
++.++.+.++-++.++. .-....++|+.-.++++..-.+++..++.|+.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~ 81 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554431 11334456666666666666667777777773
No 64
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=60.72 E-value=39 Score=26.83 Aligned_cols=48 Identities=10% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|.++++++.......+.+......+..+..+.+.+++.++..||+=+
T Consensus 24 LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 24 CLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444544555555566677777888777777543
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.35 E-value=39 Score=26.23 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|.++++++.......+.+.+....++.+..+.|.+++.++..||+=+
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555666666677777888888888877644
No 66
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=60.21 E-value=25 Score=33.76 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=48.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCC-CcccccccchhhhccC--ccCCCceeEEEEee
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQG--ISNQCTTPFMFLAK 62 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~-~~~~wL~~~kkl~~q~--~~~~~~~~l~fr~k 62 (472)
|.+|+.||++.++.+.++.....++|.-.-++ +..+.|.....|.+.. |..+..-.|.|+.+
T Consensus 50 ~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~~~ 114 (281)
T 4gmv_A 50 ERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMER 114 (281)
T ss_dssp TTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEECC
T ss_pred CCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEEec
Confidence 68999999999999999988888899865443 4567788888887753 55556667888765
No 67
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=58.39 E-value=46 Score=28.92 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=33.7
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEe
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP 238 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~ 238 (472)
+.+.+.|-|+..||.+++++++. +...++-..|.-.+...+.|....
T Consensus 51 ~~~~V~L~IS~~gIkv~d~~t~~-~i~~~~l~~ISf~a~~~~~f~fIa 97 (162)
T 4dbb_A 51 PMTEVDLFISTQRIKVLNADTQE-PMMDHPLRTISYIADIGNIVVLMA 97 (162)
T ss_dssp CCEEEEEEEESSEEEEEETTTCC-EEEEEEGGGEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEECCEEEEEECCCCc-EEeeeecceeEEEEECCCEEEEEe
Confidence 44679999999999999998874 577777666665554445444433
No 68
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.31 E-value=17 Score=29.04 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=41.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccC--c-cCCCceeEEEEee
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQG--I-SNQCTTPFMFLAK 62 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~--~-~~~~~~~l~fr~k 62 (472)
|+||+.|++..+|+..|. ...|-|.-. -.+..+-|+++.++.+-. | +..+.++|.+|..
T Consensus 26 ~~TTC~DVV~aL~~~~G~--~~~y~LvE~-wRg~ER~L~~~~r~l~~l~~wG~~~~eV~F~Lr~~ 87 (95)
T 2cs4_A 26 EVTTCQEVVIALAQAIGR--TGRYTLIEK-WRDTERHLAPHENPIISLNKWGQYASDVQLILRRT 87 (95)
T ss_dssp SSSCHHHHHHHHHHHHSC--CSEEEEEEE-ETTEEEECCSSSCHHHHHHTTGGGSTTCEEEEEEE
T ss_pred CCCcHHHHHHHHHhccCC--CccEEEEEe-cCCCeecCCCcccHHHHHHHhCcCCCceEEEEEEC
Confidence 689999999999999884 445666543 467777788887765532 2 2346678887754
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.35 E-value=72 Score=25.43 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRL 467 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (472)
..+.+|.+.|..+|.++...+..+..|- .+|=.....+=-.|.+++...+.+..++++++.-
T Consensus 33 ~~l~eE~~~R~~aE~~~~~ie~ElEeLT-------asLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 33 EDIAKENELRTKAEEEADKLNKEVEDLT-------ASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777777666655432222 2221111122334467778888888888887753
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.95 E-value=59 Score=24.76 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy586 415 KCAMEQRLVQYQEEIRLANEALKCV 439 (472)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (472)
-..+.+++.++++++..+++.|...
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554444444333
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.03 E-value=95 Score=25.81 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHh
Q psy586 399 NKLAREKQLREAAERE 414 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~ 414 (472)
.+++++++.|+..+..
T Consensus 27 e~l~k~e~~r~ele~~ 42 (129)
T 2fxo_A 27 EALEKSEARRKELEEK 42 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455455544443
No 72
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=53.69 E-value=33 Score=29.51 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=49.5
Q ss_pred eEEeee--ecCC---CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 183 NYFPIS--NKKD---TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 183 ~~F~vk--~~~~---~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
+-|.|. +.++ .+.+|-|+...|.+++.+. +...|||..|++..+....|.+.-..+ ....|.|.+.+
T Consensus 19 ~~F~V~v~~~~~~e~G~~~L~Lt~~~L~L~~~~~---~~~~WPy~~LRRYG~d~~~FsFEaGRrC~tGeGiF~F~t~~ 93 (146)
T 2kup_A 19 TKFKVTNVDDEGVELGSGVMELTQSELVLHLHRR---EAVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSR 93 (146)
T ss_dssp SEEEEEEECTTCCEEEEEEEEECSSCEEEECSSS---CCEEECGGGCSCEEEETTEEEEEECTTSSSCSEEEEEECTT
T ss_pred CEEEEEEeCCCCCcceeEEEEEccCEEEEEcCCC---CeeEcCHHHhhhcCccCCEEEEEcCCCCCCCCCEEEEEcCC
Confidence 456653 3333 3688889999998886553 468999999999999999999998543 23457777665
No 73
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=53.68 E-value=25 Score=25.48 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.++.+.+.+|
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~-~q~L~~~---g--~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 19 PTDKVERIKERVEEKEGIPPQ-QQRLIYS---G--KQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGG-GEEEEET---T--EECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCChHHHHHHHHHHHHCcChH-HEEEEEC---C--EECCCCCcHHHcCCCCCCEEEEEEe
Confidence 678999999999999998743 3445453 2 2366778888888877776666554
No 74
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=51.01 E-value=29 Score=26.68 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCC
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQC 53 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~ 53 (472)
|+||+.+|+..-|..-|++-..-+-|-|.+ .||+++..+.+.+...+.
T Consensus 28 ~~t~v~kLi~ayc~~~~I~~~~~IrllFDG-----dRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 28 VDFTVKDLIKRYCTEVKISFHERIRLEFEG-----EWLDPNDQVQSTELEDED 75 (82)
T ss_dssp TTSBHHHHHHHHHHHHTCCCCTTCEEEETT-----EECCTTSBGGGSSCCTTC
T ss_pred CCCCHHHHHHHHHHHcCCCcCceEEEEEcC-----cccCccCChhhhCCcCCc
Confidence 689999999999999999877556665642 589999999887654443
No 75
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.52 E-value=1e+02 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|..+++.+.....+...+......+..+..+.|.+++.++..||+=+
T Consensus 64 LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 64 LENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333344444444556666777888888888887644
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.66 E-value=1.1e+02 Score=25.44 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+|..+++.+..-..+...+......++.+..+.|.+++.++..||+=+
T Consensus 62 LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 62 LQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333344444445556666777888888888887644
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.31 E-value=79 Score=36.11 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhCCCc
Q psy586 6 RDLFDLVCRTVGLRE 20 (472)
Q Consensus 6 ~eL~~~V~~~lgL~e 20 (472)
.+.++.+|..||+..
T Consensus 354 ~~~l~~~a~LLgv~~ 368 (1080)
T 2dfs_A 354 HDPLTIFCDLMGVDY 368 (1080)
T ss_dssp CHHHHHHHHHHTCCH
T ss_pred hHHHHHHHHHhCCCH
Confidence 356677777777653
No 78
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=48.00 E-value=33 Score=24.76 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=38.7
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 19 ~~~tv~~lK~~i~~~~~i~~~-~q~L~~~---g--~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 19 PSDTIENVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp TTCBHHHHHHHHHHHHCCCGG-GEEEEET---T--EECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHCcCHH-HeEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEe
Confidence 578999999999999998743 3455553 2 2366678888888777766555544
No 79
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=47.67 E-value=30 Score=25.78 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~ 61 (472)
|++|+.+|-..|+...|++... .-|.|. + .-|+.++++.+..++.++.+.+.+|.
T Consensus 22 ~~~tV~~lK~~i~~~~~ip~~~-qrL~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 22 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-EEEEET---B--EECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCHHH-EEEEEC---C--eECCCCCCHHHCCCCCCCEEEEEEec
Confidence 6789999999999999987543 344442 2 23667778888888777766666553
No 80
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=46.81 E-value=51 Score=28.52 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=45.2
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
.+.+|=|+...|.++++... ...|||..|++..+....|.++-..+ ....|.|.+.+
T Consensus 34 G~~~L~lt~~~L~L~~~~~~---~~~WPy~~LRRYG~d~~~FsFEaGRRC~tGeGiF~F~t~~ 93 (153)
T 2kuq_A 34 GSGVMELTQSELVLHLHRRE---AVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSR 93 (153)
T ss_dssp EEEEEEECSSCEEEECSSSC---CEEECGGGEEEEEEETTEEEEEECTTSTTCSEEEEEECTT
T ss_pred eeEEEEEcCCEEEEEeCCCC---ceEccHHHhhhcCccCCEEEEECCCCCCCCCcEEEEEcCC
Confidence 36889999999999866543 47999999999999999999998543 23457777665
No 81
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=45.55 E-value=1e+02 Score=23.85 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q psy586 444 REAAEREKCAMEQRLVQYQEE 464 (472)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (472)
+......+.+++.++..+++.
T Consensus 65 ~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 65 VEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777766553
No 82
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=44.53 E-value=25 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccce
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHI 227 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~ 227 (472)
+.+.++|-|+..||.+++.+++. ....+|-..|.-.
T Consensus 59 ~~~~v~L~IS~~GI~v~d~~tk~-~~~~~~l~~ISf~ 94 (152)
T 1ntv_A 59 HKQKIFLTISFGGIKIFDEKTGA-LQHHHAVHEISYI 94 (152)
T ss_dssp CCEEEEEEEETTEEEEEETTTCC-EEEEECGGGEEEE
T ss_pred CCCEEEEEEECCeEEEEECCCCc-eEeeeecCcEEEE
Confidence 34689999999999999998874 4566655544433
No 83
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=42.94 E-value=94 Score=35.81 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=4.9
Q ss_pred ccCCCceEEe
Q psy586 177 LDMYGVNYFP 186 (472)
Q Consensus 177 l~~yG~~~F~ 186 (472)
|+.||.+.|.
T Consensus 463 LDi~GFE~f~ 472 (1184)
T 1i84_S 463 LDIAGFEIFE 472 (1184)
T ss_dssp EECCCCCCCS
T ss_pred eecCCcCCCC
Confidence 3445555544
No 84
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.49 E-value=31 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFI 35 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~ 35 (472)
|..+-.+|.+.|.+.+++...+-|.+.|.|..|..
T Consensus 24 ~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~ 58 (89)
T 1vd2_A 24 PSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDP 58 (89)
T ss_dssp TTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCc
Confidence 45788999999999999998889999999887654
No 85
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=41.19 E-value=65 Score=27.74 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCceEEEecCCceEEEecCCccccceeeecccccceeec-----ceeeEEEecCCCCCc
Q psy586 192 DTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD-----DKKFIIKPVDKSSPN 245 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~-----~kkF~I~~~d~~~~~ 245 (472)
|.++.|-|+..+|.++++.++ +.+..||-..|+=|.-. .+.|.+...+..+..
T Consensus 54 gq~~~L~v~~~tlrLvD~~tk-~~L~~~pI~~I~f~~~gr~~~~~~dFAfv~rd~~t~~ 111 (148)
T 3d8d_A 54 GKDLLLQLEDETLKLVEPQSQ-ALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQM 111 (148)
T ss_dssp TCEEEEEEETTEEEEECTTTC-CEEEEEEGGGCCEEEECCCC--CCEEEEEEECTTTCC
T ss_pred CceEEEEEcCCeEEEecCCCC-ceEEEeeEEEEEEEeCCCCCCccccEEEEEecCCCcc
Confidence 578999999999999999998 46899999988855552 113666665555444
No 86
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=38.47 E-value=27 Score=33.03 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=38.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcC-CCcccccccchhhhccCccCCCceeEEEEee
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDN-KGFIAWLKLDKKVQDQGISNQCTTPFMFLAK 62 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~-~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~k 62 (472)
|.+|+.||++.++.+-+..+...+.|.-..+ -+..+.|..-..|.+....-...-.|.|+.+
T Consensus 27 ~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~k~ 89 (256)
T 3hk0_A 27 ADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFRKN 89 (256)
T ss_dssp TTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEecc
Confidence 5799999999999998888888889985544 4456777777776665332233346777764
No 87
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=37.01 E-value=74 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
...+++|-|+..||.+.+.+++. ....+|...|.-++
T Consensus 42 ~~~~v~L~Vs~~gi~l~d~~~~~-~~~~~~i~~Isf~~ 78 (137)
T 3so6_A 42 KLQKVTLKVSPRGIILTDSLTSQ-LIENVSIYRISYCT 78 (137)
T ss_dssp CCEEEEEEEETTEEEEEETTTCC-EEEEEEGGGEEEEE
T ss_pred CCCEEEEEEeCCeEEEEECCCCc-EEEeeccCEEEEEE
Confidence 45679999999999999988774 45666655544333
No 88
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=36.93 E-value=45 Score=24.75 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .=|.|. + .-|+.++++.+..++.+..+.+.+|
T Consensus 22 ~~~tV~~lK~~i~~~~~i~~~~-qrL~~~---g--~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 22 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-CEEEET---T--EECCTTSBTGGGTCCTTCEEEEECC
T ss_pred CCCCHHHHHHHHHHHHCcChHH-EEEEEC---C--EECCCCCCHHHcCCCCCCEEEEEEE
Confidence 6789999999999999986443 234342 2 2466678888887776766655544
No 89
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=36.56 E-value=51 Score=27.47 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=40.4
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~ 61 (472)
|++|+.+|-..|+...|++.. -.-|.|. | ..|+.++++.+.+++.+..+.+.+|.
T Consensus 95 ~~~tv~~lK~~i~~~~gi~~~-~qrL~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 95 PSDTIENVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp TTCBHHHHHHHHHHHHCCCGG-GEEEEET---T--EECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHhCcChh-hEEEEEC---C--EECCCCCCHHHcCCCCCCEEEEEEec
Confidence 678999999999999998743 3445453 2 35777888988888777766665543
No 90
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.52 E-value=2.1e+02 Score=24.71 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQRLV 423 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (472)
.++++|.+.|..+|.++...++.+.
T Consensus 65 ~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 65 EDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777776666443
No 91
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=35.61 E-value=36 Score=25.60 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .=|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 31 ~~~tV~~lK~~i~~~~gip~~~-qrL~~~---G--~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 31 PTDKVERIKERVEEKEGIPPQQ-QRLIYS---G--KQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-CCEEET---T--EECCTTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCcCHHH-EEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEe
Confidence 6789999999999999986332 334442 2 2366678888888777765555443
No 92
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=35.32 E-value=1.5e+02 Score=22.66 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy586 407 LREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLAN 469 (472)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (472)
.|++++-..+-...-..+++++...||-++....+++-+.|-..-.+++.|+.-|-+|.|--|
T Consensus 27 lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 27 LRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 444444444423333345677777777777666665555555566777888888888877655
No 93
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=35.32 E-value=56 Score=30.74 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=48.0
Q ss_pred CceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecCC---CCCceeeehhh
Q psy586 193 TDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK---SSPNFIFFSLK 252 (472)
Q Consensus 193 ~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d~---~~~~~vF~t~q 252 (472)
.+..|-++...|.+.+.+.. .+...||+..|++....+..|++...-. ....|.|.+.+
T Consensus 178 G~y~l~l~~~~l~L~~~~~~-~~~~~wpl~~lRr~G~~~~~F~fEaGR~c~~G~G~f~f~t~~ 239 (264)
T 1qqg_A 178 GIYRLCLTSKTISFVKLNSE-AAAVVLQLMNIRRCGHSENFFFIEVGRSAVTGPGEFWMQVDD 239 (264)
T ss_dssp EEEEEEECSSEEEEEETTCS-SCSEEEEGGGEEEEEEETTEEEEEECTTSTTCSEEEEEECSC
T ss_pred CceEEEEeCcEEEEEecCCC-cceEEeehhheecccccCcEEEEEecCCCCCCCcEEEEecCc
Confidence 36788888999999887666 5789999999999999999999999543 23467787777
No 94
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=34.93 E-value=28 Score=26.52 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=32.8
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCC-CcccccccchhhhccCccCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQGISNQCT 54 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~-~~~~wL~~~kkl~~q~~~~~~~ 54 (472)
|++|..+|.+.|++.+++.. ..|.+.+..+. +... +..+.++.+.+++.++.
T Consensus 22 ~~~t~~~L~~~I~~~~~i~~-~~~~l~~~~~p~~~l~-~~~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 22 KRETAATFLKKVAKEFGFQN-NGFSVYINRNKTGEIT-ASSSKSLHLLKIKHGDL 74 (80)
T ss_dssp SSCCHHHHHHHHHHHTCCCT-TTCCCCCSCCGGGGSS-SCCCCTTTTTCCCTTCC
T ss_pred CcChHHHHHHHHHHHcCCCC-CcceEEecCCCCCccc-CCCCCCHHHcCCCCCCE
Confidence 57899999999999999864 33555443332 2211 22556666666665554
No 95
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=34.90 E-value=37 Score=25.04 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|...++...|++... .-|.|. | .-|+.++++.+.++..++.+.+..+
T Consensus 22 ~~~tv~~lk~~i~~~~gi~~~~-qrL~~~---G--~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 22 MTTHLKKLKESYCQRQGVPMNS-LRFLFE---G--QRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp TTSCTHHHHHHHHHHHTCCGGG-EEEEET---T--EECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred CCChHHHHHHHHHHHHCCCccc-EEEEEC---C--EEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 6789999999999999997442 344443 2 2366778888887776666555543
No 96
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=34.86 E-value=46 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.505 Sum_probs=26.4
Q ss_pred CCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 192 DTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
.+.++|-|+..||.+++.+++. ....||-..|.-.+
T Consensus 59 ~~~V~L~IS~~GI~v~d~~tk~-~~~~~~l~~ISfca 94 (160)
T 1p3r_A 59 KQRIWVNISLSGIKIIDEKTGV-IEHEHPVNKISFIA 94 (160)
T ss_dssp CEEEEEEEETTEEEEEETTTCC-EEEEECGGGEEEEE
T ss_pred CCEEEEEEECCeEEEEECCCCe-EEEecccCeEEEEe
Confidence 4579999999999999998874 45666655444333
No 97
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.84 E-value=1.4e+02 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 426 QEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
++++.+...++......++ .+|..-.+++..+..+++++
T Consensus 30 ~EELs~vr~~ni~~eskL~-eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLR-EAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333 33444455555555555555
No 98
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=34.47 E-value=69 Score=23.37 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.+..+.+.+|
T Consensus 23 ~~~tv~~lK~~i~~~~gip~~-~qrL~~~---g--~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 23 RLTKVEELRRKIQELFHVEPG-LQRLFYR---G--KQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp TTCBHHHHHHHHHHHHCCCGG-GEEEEET---T--EECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCcChh-hEEEEEC---C--EECCCCCCHHHcCCCCCCEEEEEEe
Confidence 678999999999999998643 2445442 2 2366677888888777776666554
No 99
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=33.90 E-value=79 Score=23.14 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=39.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|=..|+...|++... .-|.|. | .-|+.++++.+.+++.++.+.+.+|
T Consensus 23 ~~~tV~~lK~~i~~~~gip~~~-qrL~~~---G--~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 23 LTQTVAHLKQQVSGLEGVQDDL-FWLTFE---G--KPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TTSBHHHHHHHHHHHHTCCGGG-EEEEET---T--EECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CcChHHHHHHHHHhhcCCCHHH-EEEEEC---C--EECCCCCcHHHCCCCCCCEEEEEEe
Confidence 6789999999999999997443 344442 2 2366678888888877777666655
No 100
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=32.92 E-value=1.1e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHhCCCc--cCceeEEEEc
Q psy586 2 RATGRDLFDLVCRTVGLRE--TWYFGLQYED 30 (472)
Q Consensus 2 ~ttg~eL~~~V~~~lgL~e--~~~FGL~~~~ 30 (472)
.+|+.+|+..+.++.||.. ..-|.|..+.
T Consensus 33 ~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 33 TDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp SCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 6899999999999999975 4679999763
No 101
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=32.84 E-value=68 Score=28.09 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=30.6
Q ss_pred CCceEEEecCCceEEEecCCccccceeeecccccceeecceeeE
Q psy586 192 DTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFI 235 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~ 235 (472)
++++.|-|+..||.+++++++. .+..+|-..|.-++-..+.|.
T Consensus 63 ~~~V~L~IS~~gikv~d~~t~~-il~~~~l~~ISf~aD~~~~Fa 105 (172)
T 1aqc_A 63 MTEVDLFILTQRIKVLNADTQE-TMMDHPLRTISYIADIGNIVV 105 (172)
T ss_dssp -CEEEEEECSSEEEEEETTTCC-EEEEEEGGGEEEEEEETTEEE
T ss_pred CcEEEEEEECCeEEEEeCCCCc-eEeccccceEEEEeeCCcEEE
Confidence 5789999999999999998874 467777666555543333333
No 102
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.59 E-value=1.9e+02 Score=23.00 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy586 420 QRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEE 464 (472)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (472)
+++...+.++.....+|.+.. .+|..||.++..++..|..|--.
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~-~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKEN-ELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554433 36888888888888877766443
No 103
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=32.10 E-value=1.8e+02 Score=22.55 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy586 418 MEQRLVQYQEEI 429 (472)
Q Consensus 418 ~~~~~~~~~~~~ 429 (472)
++.....+||++
T Consensus 49 l~aaRlRMQEel 60 (89)
T 2q2f_A 49 LAAARLKMQEEL 60 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 104
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=32.02 E-value=2.4e+02 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=6.1
Q ss_pred HHHHHhHHHHHHH
Q psy586 455 EQRLVQYQEEIRL 467 (472)
Q Consensus 455 ~~~~~~~~~~~~~ 467 (472)
+.+...++++++.
T Consensus 100 E~k~~eLEeeL~~ 112 (147)
T 2b9c_A 100 EGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555443
No 105
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=31.94 E-value=86 Score=22.60 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFM 58 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~ 58 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.+..+.+.
T Consensus 22 ~~~tV~~LK~~i~~~~~i~~~-~qrL~~~---g--k~L~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 22 PESTVLQFKEAINKANGIPVA-NQRLIYS---G--KILKDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTCBHHHHHHHHHHHHCCCGG-GEEEEET---T--EECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCHH-HEEEEEC---C--eEcCCCCCHHHcCCCCCCEEEEE
Confidence 578999999999999998743 3445443 2 23666778888887766655443
No 106
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=31.84 E-value=64 Score=24.52 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.++.+.+.+|
T Consensus 28 ~~~TV~~LK~~I~~~~gip~~-~qrL~~~---G--k~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 28 PSDTIENLKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp TTSBHHHHHHHHHHHHCCCGG-GCEEEET---T--EECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred CCChHHHHHHHHHHHHCcChh-hEEEEEC---C--EECCCCCcHHHcCCCCCCEEEEEEe
Confidence 678999999999999998643 2344442 2 2356677888888777766555544
No 107
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.61 E-value=69 Score=24.09 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=38.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~ 61 (472)
|++|+.+|-..|+...|++... .-|.|. | .-|+.++++.+.++..+..+.+.+|.
T Consensus 28 ~~~tV~~lK~~i~~~~gip~~~-qrL~~~---g--k~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 28 RKATIEELRERVWALFDVRPEC-QRLFYR---G--KQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp TTCBHHHHHHHHHHHSCCCTTT-EEEEET---T--EECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHCcChhh-EEEEEC---C--eECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 6789999999999999986432 444442 2 23666778888887777766666553
No 108
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=31.41 E-value=80 Score=24.40 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=39.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .-|.|. | .-|+.++++.+.+++.+..+.+..+
T Consensus 19 ~~~TV~~LK~~I~~~~gi~~~~-qrL~~~---G--k~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 19 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp TTCBHHHHHHHHHHHTCCCGGG-EEEEET---T--EECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHCcChhh-EEEEEC---C--EECCCCCCHHHcCCCCCCEEEEEEe
Confidence 5789999999999999986432 444442 2 2366678888888877776666554
No 109
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=31.11 E-value=57 Score=24.76 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=32.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCT 54 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~ 54 (472)
|++|+.||-..|+...|+.. .-+.|.|..+......-+.++++.+.++..+..
T Consensus 19 ~~~Tv~~Lk~~I~~~~gi~~-~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~ 71 (86)
T 2kzr_A 19 SRTRLRELQGQIAAITGIAP-GSQRILVGYPPECLDLSDRDITLGDLPIQSGDM 71 (86)
T ss_dssp TTCBHHHHHHHHHHHTCCCT-TTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE
T ss_pred CCCCHHHHHHHHHHHhCCCc-cceEEEeCCCCcccccCCCCCCHHHcCCCCCCE
Confidence 57899999999999999863 234454432221111012567788877765553
No 110
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=30.88 E-value=49 Score=25.83 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=39.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|...|+...|++... .-|.|. | .-|..++++.+.++..++.+.+..+
T Consensus 40 ~~~tv~~lK~~i~~~~gip~~~-qrLif~---G--k~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 40 MTTHLKKLKESYCQRQGVPMNS-LRFLFE---G--QRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp TTSCTHHHHHHHHHHHTCCGGG-EEEEET---T--EECCTTCCHHHHTCCTTCEEEEEES
T ss_pred CCCcHHHHHHHHHHHHCCChhh-EEEEEC---C--eEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 6789999999999999997442 444443 2 2367778888888777776666554
No 111
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=30.35 E-value=82 Score=27.13 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.6
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccceeec
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD 230 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~ 230 (472)
..+.+.|-|+..||.+.+..++. ....||-..|.-++..
T Consensus 55 ~~~~v~L~VS~~gi~l~d~~tk~-~~~~~~i~~ISfca~d 93 (160)
T 2ej8_A 55 RMTESHLLVTCDCLKLIDPQTQV-TRLTFPLPCVVLYATH 93 (160)
T ss_dssp CCCEEEEEEESSEEEEECTTTCC-EEEEEEGGGEEEEEEE
T ss_pred cCCEEEEEEECCeEEEEeCCCCe-EEEEeeCCeEEEEEec
Confidence 45779999999999999998884 5778877766655554
No 112
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=29.67 E-value=88 Score=23.86 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=39.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~ 61 (472)
|++|+.+|-..|+...|++-.. .=|.|. | .-|+.++++.+.++..+..+.+..|.
T Consensus 20 ~~~TV~~LK~~i~~~~gip~~~-qrL~~~---G--~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 20 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-EEEEET---T--EECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHhhhCCChhH-EEEEEC---C--EECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 5789999999999999986433 334342 2 23677788888888777766666553
No 113
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=28.95 E-value=28 Score=27.16 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccC--c-cCCCceeEEEEe
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQG--I-SNQCTTPFMFLA 61 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~--~-~~~~~~~l~fr~ 61 (472)
|.||++|++ .+|+..|- .-|-|.-. -.+..+-|.++.++.+-. | +..+..+|.+|.
T Consensus 27 ~~TTC~DVV-aL~~~~G~---~~~~LvE~-WR~~ER~L~~~er~l~~l~~WG~~~~eV~F~Lr~ 85 (86)
T 2uwq_A 27 PETICRDVV-DLCKEPGE---SDCHLAEV-WCGSERPVADNERMFDVLQRFGSQRNEVRFFLRH 85 (86)
T ss_dssp TTCBSHHHH-HHSCSSCS---SSCEEEEE-ETTEEEEECTTCBHHHHHHHHCSCGGGCEEEEEC
T ss_pred CCCcHHHHH-HHHHccCC---CcEEEEee-eCCCcccCCCcccHHHHHHHHcccCCceEEEEec
Confidence 679999999 89988875 44555433 355666677777765532 1 123556777664
No 114
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=28.88 E-value=70 Score=24.33 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++-.. .=|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 36 ~~~TV~~LK~~I~~~~gip~~~-qrL~~~---G--k~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 36 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-CEEEET---T--EECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCCCHHHHHHHHHhhhCCChhh-EEEEEC---C--eECCCcCcHHHCCCCCCCEEEEEEe
Confidence 5789999999999999986432 233342 2 2366778888888877776666554
No 115
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.53 E-value=70 Score=23.90 Aligned_cols=54 Identities=17% Similarity=-0.003 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .-|.|. + .-|+.++++.+.++..+..+.+..|
T Consensus 26 ~~~tV~~lK~~i~~~~gi~~~~-qrL~~~---G--k~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 26 PNSFILGLKQQIEDQQGLPKKQ-QQLEFQ---G--QVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp SSSBHHHHHHHHHHHTCCCTTT-EEEEET---T--EECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CCChHHHHHHHHHHHhCCChHH-EEEEEC---C--EEccCCCCHHHCCCCCCCEEEEEEe
Confidence 5789999999999999986433 344443 2 2366677888877766665555443
No 116
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.41 E-value=2.8e+02 Score=29.21 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=14.2
Q ss_pred eeeehhhhhhhhhcCcccCCCcc
Q psy586 246 FIFFSLKVRMNKLYGDYDDSTYK 268 (472)
Q Consensus 246 ~vF~t~q~r~~~l~g~l~c~~~~ 268 (472)
+.-+....-..+-+|.+||..++
T Consensus 293 L~~l~~~yv~ain~g~vP~~~s~ 315 (592)
T 1f5n_A 293 LESLVLTYVNAISSGDLPCMENA 315 (592)
T ss_dssp HHHHHHHHHHHHHHTSCCBHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcchH
Confidence 33444444555667888887775
No 117
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.29 E-value=2.3e+02 Score=29.21 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.2
Q ss_pred HHhHHH
Q psy586 458 LVQYQE 463 (472)
Q Consensus 458 ~~~~~~ 463 (472)
+.++++
T Consensus 574 ~~~l~~ 579 (597)
T 3oja_B 574 VKQLEA 579 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 118
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.23 E-value=1.1e+02 Score=25.98 Aligned_cols=59 Identities=25% Similarity=0.310 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 399 NKLAREKQLREAAEREKCAMEQRLVQYQEEI-RLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
.++++|.+.|..+|.++...+..+..+-..+ ..||. +=-.|.+++...++|..+++++.
T Consensus 53 ~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~--------MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 53 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN--------LVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777776666555432222111 12222 22334556667777777776655
No 119
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.02 E-value=4.1e+02 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=7.0
Q ss_pred HHHHHHHHHhHHHHH
Q psy586 451 KCAMEQRLVQYQEEI 465 (472)
Q Consensus 451 ~~~~~~~~~~~~~~~ 465 (472)
.++.+.+|.+++++.
T Consensus 82 ~AeY~~kl~aYe~~~ 96 (497)
T 3iox_A 82 LADYPVKLKAYEDEQ 96 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455554444
No 120
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=28.00 E-value=1.5e+02 Score=22.99 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=3.1
Q ss_pred HHHhHHHH
Q psy586 457 RLVQYQEE 464 (472)
Q Consensus 457 ~~~~~~~~ 464 (472)
++.++.+.
T Consensus 60 Kl~~~~e~ 67 (86)
T 3nr7_A 60 KLQQYREM 67 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 121
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.92 E-value=1.5e+02 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 418 MEQRLVQYQEEIRLANEALKCVKV 441 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~ 441 (472)
.+.++.+++++++.+...|++...
T Consensus 99 aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 99 SEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444555666666655555554443
No 122
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=27.43 E-value=1.7e+02 Score=22.70 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEE
Q psy586 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59 (472)
Q Consensus 3 ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~f 59 (472)
.+-.++...|.+.-.|.+.. |.+.|.|.+|..--+..+..+.+......+.+++..
T Consensus 28 ~~fe~f~~lv~~lh~L~~~~-f~i~Y~D~dGDLlpInnDdnl~~Al~~a~plLRl~I 83 (86)
T 1wmh_B 28 SGFQEFSRLLRAVHQIPGLD-VLLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLV 83 (86)
T ss_dssp CCHHHHHHHHHHHTTCTTCC-CEEEEECTTSCEEECCSHHHHHHHTTSSSSCEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCC-EEEEEECCCCCEeeecCHHHHHHHHHhCCCcEEEEE
Confidence 46678888888888885555 999999988876666667777665433334455544
No 123
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.00 E-value=87 Score=22.83 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 26 ~~~tV~~LK~~i~~~~~i~~~-~qrL~~~---g--k~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 26 EDELVSTLKQLVSEKLNVPVR-QQRLLFK---G--KALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSCBHHHHHHHHHHHTCCCTT-TCEEEET---T--EECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCCcHHHHHHHHHHHHCcCHH-HEEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEe
Confidence 578999999999999998643 2344442 2 1356677888888777666555443
No 124
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=26.62 E-value=2.7e+02 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQ 424 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ 424 (472)
+-|+++.+....++....+|++|
T Consensus 17 ~AEk~A~~iV~~ARk~k~~rLKq 39 (119)
T 4efa_G 17 QAEKEAHEIVSKARKYRQDKLKQ 39 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444443
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.58 E-value=2.1e+02 Score=36.67 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=11.5
Q ss_pred ecCCCceEEEecCCc
Q psy586 189 NKKDTDLWLGVTALG 203 (472)
Q Consensus 189 ~~~~~~~~LgV~~~G 203 (472)
...|.-+++||+-.|
T Consensus 1644 qp~GhaLLVGvgGSG 1658 (3245)
T 3vkg_A 1644 QPQGHALLIGVSGGG 1658 (3245)
T ss_dssp STTCCEEEEESTTSS
T ss_pred cCCCCeEEecCCCCc
Confidence 467788899988765
No 126
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=26.39 E-value=3.2e+02 Score=23.79 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy586 419 EQRLVQYQEEIRLANEALK 437 (472)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (472)
.+.+.+-++++..|.....
T Consensus 105 ~q~Le~ar~el~qArke~e 123 (169)
T 3k29_A 105 SKELERAEVELTKRRKEEE 123 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555544443
No 127
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.28 E-value=2.2e+02 Score=21.70 Aligned_cols=55 Identities=11% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy586 406 QLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465 (472)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (472)
+.++.+....-|++. +++.+++++.-...|..... ..++++++++.-+.-+++..
T Consensus 15 rl~E~~~q~qaEl~s-LrrT~~EL~~G~~KL~~mi~----~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 15 RMKEEMDRAQAELNA-LKRTEEDLKKGHQKLEEMVT----RLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 355566666666655 56677777777777765555 44566667776666666544
No 128
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.24 E-value=3.4e+02 Score=23.68 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy586 402 AREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKV 441 (472)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (472)
..|++.|.++..-..+++.|...+++++......+..+..
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555556555555554443333
No 129
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=25.12 E-value=1e+02 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=27.6
Q ss_pred CCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 192 DTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
+.++.|-|+..||.+++.+++. .+..+|-..|.-.+
T Consensus 119 ~~~V~L~IS~~gIkv~d~~t~~-~i~~~~i~~ISf~a 154 (207)
T 1n3h_A 119 GMPITLTVSTSSLNLMAADCKQ-IIANHHMQSISFAS 154 (207)
T ss_dssp SEEEEEEEETTEEEEEETTTTS-CBCCCSCCCCSSSC
T ss_pred CceEEEEEECCeEEEEeCCCCc-eeeeeccceEEEEe
Confidence 5789999999999999998874 46666655555444
No 130
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.00 E-value=2.7e+02 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy586 401 LAREKQLREAAEREKCAMEQRLVQYQ 426 (472)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (472)
|...++.....+|.+.+++.++.+++
T Consensus 17 L~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 17 VSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677778888888877766654
No 131
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=24.71 E-value=98 Score=27.17 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred CCCceEEEecCCceEEEecCCccccceeeecccccceeec
Q psy586 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFD 230 (472)
Q Consensus 191 ~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~ 230 (472)
..+++.|-|+..||.+.+..++. ....||-..|.-++..
T Consensus 68 ~~~~V~L~VS~~gI~l~d~~tk~-~i~~~~i~~ISfca~d 106 (175)
T 2ela_A 68 RMTESHLLVTCDCLKLIDPQTQV-TRLTFPLPCVVLYATH 106 (175)
T ss_dssp CCEEEEEEECSSEEEEECTTTCC-EEEEEEGGGEEEEEEE
T ss_pred cCCEEEEEEECCeEEEEeCCCCc-EEEEeecCEEEEEEeC
Confidence 45679999999999999998884 5777876666655544
No 132
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.56 E-value=2.6e+02 Score=32.06 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=5.9
Q ss_pred CCCHHHHHHHHH
Q psy586 141 QMTPEMWEDRIK 152 (472)
Q Consensus 141 ~~~~~~~e~~I~ 152 (472)
+++++.+...+.
T Consensus 391 g~~~~~l~~~l~ 402 (1184)
T 1i84_S 391 GINVTDFTRSIL 402 (1184)
T ss_dssp TSCHHHHHHHHH
T ss_pred CCCHHHHHHHhc
Confidence 455555544443
No 133
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.47 E-value=2.2e+02 Score=28.53 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q psy586 413 REKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQY 461 (472)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (472)
.+-.++.+++.++++++++..+++....+++.. ++.++..+--.+..+
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-SNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 333344445555555666666665555554433 334444444444433
No 134
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.40 E-value=1e+02 Score=24.15 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++. ...-|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 40 ~~~TV~~LK~~I~~~~gip~-~~QrLi~~---G--k~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 40 DTCTIQQLKEEISQRFKAHP-DQLVLIFA---G--KILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp TTCBHHHHHHHHHHHHTCCG-GGEEEEET---T--EECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHCcCh-hhEEEEEC---C--EECCCcCcHHHCCCCCCCEEEEEEc
Confidence 57899999999999999863 33445443 2 2366677888888776665555443
No 135
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.06 E-value=1.2e+02 Score=24.25 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++... .=|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 54 ~~~TV~~LK~~I~~~~gip~~~-QrLi~~---G--k~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 54 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-EEEEET---T--EECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCChHH-EEEEEC---C--EECCCCCcHHHCCCCCCCEEEEEEe
Confidence 6789999999999999987432 334442 2 2366677888888777776666554
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.90 E-value=2.1e+02 Score=21.47 Aligned_cols=43 Identities=23% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhC
Q psy586 429 IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472 (472)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (472)
++.-+++|....++++++-++ =++++.+|.+..++++.-...|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 137
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=23.67 E-value=82 Score=24.24 Aligned_cols=54 Identities=15% Similarity=0.012 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++.. -.-|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 36 ~~~TV~~LK~~I~~~~gip~~-~qrLi~~---G--k~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 36 GQETVAQIKAHVASLEGIAPE-DQVVLLA---G--APLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSCBHHHHHHHHHHHHTCCGG-GCEEEET---T--EECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCCcHHHHHHHHHHHhCcChh-HEEEEEC---C--EECCCCCcHHHCCCCCCCEEEEEEe
Confidence 678999999999999998633 2344443 2 2366677888887776665555443
No 138
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.33 E-value=17 Score=37.04 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHh-cccCCCceEEeee
Q psy586 161 MSRDEAEMEYLKIAQ-DLDMYGVNYFPIS 188 (472)
Q Consensus 161 ~s~~eA~~~yLkiaq-~l~~yG~~~F~vk 188 (472)
+++.+.. .+.+.+. .+..+|+..|.+.
T Consensus 189 Lt~~E~~-~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 189 ISKSELT-KFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp SCHHHHH-HHHHHHHHHHBTTBCCCCCCC
T ss_pred cchHHHH-HHHHHHHHHHHHcCCcEEecC
Confidence 4555543 3444444 4777777777664
No 139
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.02 E-value=2.8e+02 Score=21.86 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHhh
Q psy586 418 MEQRLVQYQEEIRLANE---ALKCVKVSEREAAEREKCAME---QRLVQYQEEIRLAN 469 (472)
Q Consensus 418 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 469 (472)
++.++.+.++-++.++. .-.+..++|+.-.++++..-. .+...++.|+.--|
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Ln 80 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLN 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44445555555555431 113445666766666666543 45666777774433
No 140
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.88 E-value=1.3e+02 Score=17.97 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy586 417 AMEQRLVQYQEEI 429 (472)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (472)
++|++|+-++..+
T Consensus 5 alekkcaaleskl 17 (31)
T 3ljm_A 5 ALEKKCAALESKL 17 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566665544443
No 141
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.77 E-value=1.5e+02 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcc-cc-cccchhhhccCccCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFI-AW-LKLDKKVQDQGISNQCT 54 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~-~w-L~~~kkl~~q~~~~~~~ 54 (472)
|++|+.+|=..|....|++-. -.-|.|.+.++.. .+ ++.++++.+.++..+..
T Consensus 27 ~~~TV~~lK~ki~~~~gip~~-~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~ 81 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGSPAS-CMELELYGADDKFYSKLDQEDALLGSYPVDDGCR 81 (95)
T ss_dssp TTSBHHHHHHHHHHHTCSCTT-TCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE
T ss_pred ccCHHHHHHHHHHHHHCCCHH-HeEEEEeCCCCccccccCCCcCCHhHCCCCCCCE
Confidence 578999999999999998733 3455566533322 13 46677888877765553
No 142
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=22.56 E-value=1.4e+02 Score=25.88 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.8
Q ss_pred CCceEEEecCCceEEEecCCccccceeeeccccccee
Q psy586 192 DTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHIS 228 (472)
Q Consensus 192 ~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~s 228 (472)
.+++.|-|+..||.+.+.+++. ++..+|...|.-++
T Consensus 77 ~~~V~L~VS~~GI~l~d~~t~~-~l~~~~i~~ISf~~ 112 (168)
T 3f0w_A 77 SVKSVLWVSADGLRVVDDKTKD-LLVDQTIEKVSFCA 112 (168)
T ss_dssp CEEEEEEECSSEEEEEETTTCC-EEEEEEGGGEEEEE
T ss_pred CcEEEEEEECCEEEEEeCCCCe-EEEeeecCcEEEEe
Confidence 5679999999999999988774 46666655544333
No 143
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.49 E-value=2e+02 Score=19.99 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy586 433 NEALKCVKVSEREAAEREKCAM 454 (472)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~ 454 (472)
|+.|......+|.+.++-++++
T Consensus 25 N~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 25 NSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333444444444443
No 144
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=22.48 E-value=1.4e+02 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|-..|+...|++-.. .-|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 54 ~~~TV~~LK~~I~~~~gip~~~-qrLi~~---G--k~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 54 PSDTIENVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp TTCBHHHHHHHHHHHHCCCTTT-EEEEET---T--EECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCcCccc-EEEEEC---C--EECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5789999999999999986432 344442 2 2366678888888777776665554
No 145
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=22.24 E-value=1.3e+02 Score=23.56 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=36.7
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~f 59 (472)
|++|+.+|-..|+...|++.. ..-|.|. | .-|+.++++.+.+++.+..+.+..
T Consensus 43 ~~~TV~~LK~~I~~~~gip~~-~qrLi~~---G--k~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 43 ENSSVQQFKEEISKRFKSHTD-QLVLIFA---G--KILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp SCCCHHHHHHHHHHHHTCCGG-GEEEEET---T--EEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCcChh-hEEEEEC---C--EECCCcCcHHHcCCCCCCEEEEEE
Confidence 578999999999999998733 3444442 2 235667788888877666555443
No 146
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.83 E-value=3.9e+02 Score=26.78 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=8.3
Q ss_pred HHHHHHHHhHHHHHHHhh
Q psy586 452 CAMEQRLVQYQEEIRLAN 469 (472)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~ 469 (472)
+.+++.+.++..++.-|+
T Consensus 452 ~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 452 ARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhcc
Confidence 334444445555554444
No 147
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.38 E-value=1.2e+02 Score=22.94 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|=..|+...|++-.. .=|.|. | .-|+.++++.+.+++.+..+.+..|
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~-qrLi~~---G--k~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 19 PTDKVERIKERVEEKEGIPPQQ-QRLIYS---G--KQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp TTCBHHHHHHHHHHHHCCCGGG-CEEEET---T--EECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CCCCHHHHHHHHHHHHCcChhH-EEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEE
Confidence 6789999999999999986432 234342 2 2366678888888777776555544
No 148
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=21.21 E-value=2e+02 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcc-ccc-ccchhhhccCccCCCc
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFI-AWL-KLDKKVQDQGISNQCT 54 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~-~wL-~~~kkl~~q~~~~~~~ 54 (472)
|++|+.+|=..|....|++-. ---|.|.+.++.. .+| +.++++.+.++..+..
T Consensus 26 ~~~TV~~lK~ki~~~~Gip~~-~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ 80 (122)
T 1t0y_A 26 AGMSLNDLKKKLELVVGTTVD-SMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR 80 (122)
T ss_dssp TTSBHHHHHHHHHHHHCCCTT-TEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE
T ss_pred CCCcHHHHHHHHHHHhCCCHH-HeEEEEecCCCccccccCCCcCCHHHCCCCCCCE
Confidence 678999999999999999844 4677777543322 133 6677888887765543
No 149
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.74 E-value=1.5e+02 Score=22.27 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccc-cccchhhhccCccCCCceeEEEE
Q psy586 1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAW-LKLDKKVQDQGISNQCTTPFMFL 60 (472)
Q Consensus 1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~w-L~~~kkl~~q~~~~~~~~~l~fr 60 (472)
|++|+.+|=..|....|++.. -.-|.|.+ .- |+.++++.+.+++.+..+.+..+
T Consensus 29 ~~~TV~~LK~~I~~~~gip~~-~QrLi~~G-----k~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 29 YRDTLLVVKQKIERSQHIPVS-KQTLIVDG-----IVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp TTSBHHHHHHHHHHHHTCCGG-GEEEEETT-----EECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CCChHHHHHHHHHHHHCcChH-HEEEEECC-----EEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 678999999999999998643 34454432 13 56677888888777776665543
Done!