RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy586
(472 letters)
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 289 bits (741), Expect = 1e-95
Identities = 157/256 (61%), Positives = 209/256 (81%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
TG+ LFD V +T+GLRE W+FGLQY+D KGF WLKL+KKV Q + + F F A
Sbjct: 20 NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY EDV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++ +
Sbjct: 80 KFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 139
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
K G LA + LLPQRV++Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL+MYG
Sbjct: 140 KSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYG 199
Query: 182 VNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241
VNYF I NKK ++LWLGV ALGLNIYE+ ++LTPK FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 200 VNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDK 259
Query: 242 SSPNFIFFSLKVRMNK 257
+P+F+F++ ++R+NK
Sbjct: 260 KAPDFVFYAPRLRINK 275
Score = 87.0 bits (215), Expect = 3e-19
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Query: 249 FSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQ-RYGDYDDSTYKPGMLASEDLLPQRVID 307
F L+V+ L D +LAS Q +YGD++ +K G LA + LLPQRV++
Sbjct: 99 FFLQVKEGILNDDIYCPPETAVLLAS--YAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLE 156
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL+MYGVNYF I
Sbjct: 157 QHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSI 205
Score = 35.3 bits (81), Expect = 0.028
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 357 SILDLCIGNHDLFMRRRKP 375
IL LC+GNH+L+MRRRKP
Sbjct: 276 RILALCMGNHELYMRRRKP 294
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 284 bits (729), Expect = 1e-93
Identities = 176/256 (68%), Positives = 207/256 (80%), Gaps = 1/256 (0%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
+ G+DLFDLVCRT+GLRETW+FGLQY +AWLK+DKKV D +S + F FLA
Sbjct: 41 KWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY E+ EELVQE+TQHLFFLQVK+ IL IYCPPEASVLLASYAVQAKYGDYD S +
Sbjct: 100 KFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVH 159
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
K G LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL+MYG
Sbjct: 160 KRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYG 219
Query: 182 VNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241
VNYF I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK
Sbjct: 220 VNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDK 279
Query: 242 SSPNFIFFSLKVRMNK 257
F F S K+R+NK
Sbjct: 280 KIDVFKFNSSKLRVNK 295
Score = 93.5 bits (232), Expect = 2e-21
Identities = 57/76 (75%), Positives = 66/76 (86%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
+YGDYD S +K G LA E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYL
Sbjct: 150 KYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYL 209
Query: 341 KIAQDLDMYGVNYFPI 356
KIAQDL+MYGVNYF I
Sbjct: 210 KIAQDLEMYGVNYFAI 225
Score = 32.3 bits (73), Expect = 0.34
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 357 SILDLCIGNHDLFMRRRK 374
IL LCIGNHDLFMRRRK
Sbjct: 296 LILQLCIGNHDLFMRRRK 313
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 277 bits (708), Expect = 3e-87
Identities = 187/455 (41%), Positives = 270/455 (59%), Gaps = 22/455 (4%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
TG+ LFD V +T+GLRE W+FGLQY D+KG + W+KL KKV Q + + F F A
Sbjct: 23 TTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY EDVA+EL+QE+T LF+LQVK AILS +IYCPPE SVLLASYAVQA++GD++ + +
Sbjct: 83 KFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVH 142
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
PG LA++ LLPQRV DQ++M+ E WE I W+ +HRGM R++A MEYLKIAQDL+MYG
Sbjct: 143 GPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYG 202
Query: 182 VNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241
VNYF I NKK+T+LWLGV ALGLNIYEK++KLTPK FPWSEIR+ISF+D+KFIIKP+DK
Sbjct: 203 VNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPIDK 262
Query: 242 SSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLL 301
+P+F+FF+ +VR+NK ++ M + + + ++
Sbjct: 263 KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREK 322
Query: 302 PQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDL 361
Q I + + + + + E L AQD+ +
Sbjct: 323 LQLEIAARERAE---KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQ-------- 371
Query: 362 CIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQR 421
+R+ + E++Q +++ + R + +N A E+Q E R K ++
Sbjct: 372 --------LRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAK---QEE 420
Query: 422 LVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQ 456
+ + Q+E+ L + + ++ +A ++ A
Sbjct: 421 VSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAA 455
Score = 61.5 bits (148), Expect = 3e-10
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 357 SILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKC 416
IL LC+GNH+L+MRRRKPDT+++QQMK+QA+EEK +Q +R KL E RE AE+++
Sbjct: 279 RILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQ 338
Query: 417 AMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
+ RL Q QEE+ + L + E+ + + Q + L
Sbjct: 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAM 392
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 260 bits (667), Expect = 2e-83
Identities = 51/259 (19%), Positives = 106/259 (40%), Gaps = 18/259 (6%)
Query: 1 WRATGRDLFDLVCRTVGLRETWYFGLQY----EDNKGFIAWLKLDKKVQDQGISNQCTTP 56
T D+ +C +G+ + L E + WL + +++QG+ T
Sbjct: 104 DSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHET-- 161
Query: 57 FMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDY 116
+ KF+ D + V +L ++Q + IL+ + + A + Q ++G +
Sbjct: 162 LLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPH 221
Query: 117 DDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQD 176
++ +K G L +D LP+ + + E +I + + MS EA++ Y+K+A+
Sbjct: 222 NEQKHKAGFLDLKDFLPKEYVK------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARS 275
Query: 177 LDMYGVNYFPISNKKDTD-----LWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDD 231
L YGV++F + K LG+T + +++ K + + I+ +
Sbjct: 276 LKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK-EVIQEWSLTNIKRWAASP 334
Query: 232 KKFIIKPVDKSSPNFIFFS 250
K F + D + +
Sbjct: 335 KSFTLDFGDYQDGYYSVQT 353
Score = 88.8 bits (220), Expect = 2e-19
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 232 KKFIIKPVDKSSPN--FIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQ-RYGDYDDS 288
K F S ++ R + L G + S K A Q ++G +++
Sbjct: 167 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAG--FQCQIQFGPHNEQ 224
Query: 289 TYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDM 348
+K G L +D LP+ + + E +I + + MS EA++ Y+K+A+ L
Sbjct: 225 KHKAGFLDLKDFLPKEYVK------QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKT 278
Query: 349 YGVNYFPI 356
YGV++F +
Sbjct: 279 YGVSFFLV 286
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 249 bits (638), Expect = 4e-80
Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 18/260 (6%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
A G+DL VC + L E YFGL DN WL K+++ Q F F
Sbjct: 37 HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWN--FTFNV 94
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KFY D A+ L +++T++ LQ++Q I++ + C LL SY +Q++ GDYD +
Sbjct: 95 KFYPPDPAQ-LTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELH 153
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
++ L P + + E+++ + +R M+ +A++E+L+ A+ L MYG
Sbjct: 154 GVDYVSDFKLAPNQ--------TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYG 205
Query: 182 VNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241
V+ + + D+ LGV + GL +Y+ + ++ FPW ++ IS+ F IK
Sbjct: 206 VDLHKAKDLEGVDIILGVCSSGLLVYKDKLRI---NRFPWPKVLKISYKRSSFFIKIRPG 262
Query: 242 SSPN----FIFFSLKVRMNK 257
F R K
Sbjct: 263 EQEQYESTIGFKLPSYRAAK 282
Score = 76.5 bits (188), Expect = 9e-16
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVID 307
+ L++R + + G S +L S + GDYD + ++ L P +
Sbjct: 112 YLCLQLRQDIVAGRLPCSFATLALLGSY-TIQSELGDYDPELHGVDYVSDFKLAPNQ--- 167
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
+ E+++ + +R M+ +A++E+L+ A+ L MYGV+
Sbjct: 168 -----TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKA 211
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 220 bits (561), Expect = 3e-68
Identities = 45/290 (15%), Positives = 97/290 (33%), Gaps = 30/290 (10%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDN-------------KGFIAWLKLDKKVQDQG 48
T + + + + + YF + + W ++ ++ +
Sbjct: 27 NTTVQQIMEGMR--LSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAELTNLD 84
Query: 49 ISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYA 108
+ F+ +V +++ + + F + + +L P + LAS
Sbjct: 85 PQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLL 144
Query: 109 VQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEM 168
+Q YG+Y+ +K G L E+L + + + W +RI Y + EM
Sbjct: 145 LQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEM 204
Query: 169 E-----YLKIAQDLDMYGVNYF--------PISNKKDTDLWLGVTALGLNIYEKENKLTP 215
+L+ ++ YG +F SN K +++GV GL++ E K
Sbjct: 205 HHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETK-AL 263
Query: 216 KTTFPWSEIR-HISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDD 264
+ + + D F I ++ + + KL +
Sbjct: 264 LISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVKLLMKLNG 313
Score = 79.2 bits (195), Expect = 2e-16
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEME-- 338
YG+Y+ +K G L E+L + + + W +RI Y + EM
Sbjct: 148 VYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHL 207
Query: 339 ---YLKIAQDLDMYGVNYFPISILD 360
+L+ ++ YG +F I
Sbjct: 208 QRMFLQNCWEIPTYGAAFFTGQIFT 232
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 203 bits (518), Expect = 2e-63
Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KF+ D + V +L ++Q + IL+ + + A Y Q ++G +++ +
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 61
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
KPG L +D LP+ I + E +I + + + MS EA++ Y+K+A+ L YG
Sbjct: 62 KPGFLELKDFLPKEYIK------QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 115
Query: 182 VNYFPISNKKDTD-----LWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFII 236
V++F + K LG+T + +++ K + + + I+ + K F +
Sbjct: 116 VSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQ-EWSLTNIKRWAASPKSFTL 174
Query: 237 KPVDKSSPNFIFFS 250
D + +
Sbjct: 175 DFGDYQDGYYSVQT 188
Score = 88.8 bits (220), Expect = 1e-20
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVID 307
++ R + L G + S K A ++G +++ +KPG L +D LP+ I
Sbjct: 20 LLYVQARDDILNGSHPVSFDKACEFAGY-QCQIQFGPHNEQKHKPGFLELKDFLPKEYIK 78
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
+ E +I + + + MS EA++ Y+K+A+ L YGV++F +
Sbjct: 79 ------QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLV 121
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 192 bits (490), Expect = 5e-59
Identities = 38/198 (19%), Positives = 84/198 (42%), Gaps = 13/198 (6%)
Query: 59 FLAKFYAEDVAEELVQE-VTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYD 117
E++ + ++ V +L ++Q + IL+ + + A + Q ++G ++
Sbjct: 9 SGVDLGTENLYFQSSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN 68
Query: 118 DSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 177
+ +K G L +D LP+ + + E +I + + MS EA++ Y+K+A+ L
Sbjct: 69 EQKHKAGFLDLKDFLPK------EYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 122
Query: 178 DMYGVNYFPISNKKDT-----DLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDK 232
YGV++F + K LG+T + +++ K + + I+ + K
Sbjct: 123 KTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK-EVIQEWSLTNIKRWAASPK 181
Query: 233 KFIIKPVDKSSPNFIFFS 250
F + D + +
Sbjct: 182 SFTLDFGDYQDGYYSVQT 199
Score = 88.8 bits (220), Expect = 2e-20
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
++G +++ +K G L +D LP+ + + E +I + + MS EA++ Y+
Sbjct: 63 QFGPHNEQKHKAGFLDLKDFLPK------EYVKQKGERKIFQAHKNCGQMSEIEAKVRYV 116
Query: 341 KIAQDLDMYGVNYFPI 356
K+A+ L YGV++F +
Sbjct: 117 KLARSLKTYGVSFFLV 132
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 156 bits (395), Expect = 4e-42
Identities = 49/303 (16%), Positives = 106/303 (34%), Gaps = 49/303 (16%)
Query: 3 ATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQD------------QGIS 50
T ++ + + R + + ++ +E N ++ V D +
Sbjct: 237 TTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVADVLAKFEKLAATSEVGD 296
Query: 51 NQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQ 110
F ++V ++ V F Q +A++ P E +LA+ +Q
Sbjct: 297 LPWKFYFKLYCFLDTDNVPKD---SVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQ 353
Query: 111 AKYGDYDDSTYKP--------------------------GMLASEDLLPQRVIDQY-QMT 143
GDY P G + + + ++++D + +
Sbjct: 354 YLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEE 413
Query: 144 PEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKD---TDLWLGVT 200
I + +GM++++A +Y+ + ++ YG F + K+ +LWLGV+
Sbjct: 414 VSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVS 473
Query: 201 ALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVR-MNKLY 259
A +++Y++ P F + I VD+ +F + +V + KL
Sbjct: 474 ADAVSVYKRGEG-RPLEVFQYEHILSFGAPLANTYKIVVDERE--LLFETSEVVDVAKLM 530
Query: 260 GDY 262
Y
Sbjct: 531 KAY 533
Score = 71.1 bits (173), Expect = 2e-13
Identities = 19/133 (14%), Positives = 49/133 (36%), Gaps = 10/133 (7%)
Query: 258 LYGDYDDSTYKPGMLAS---EDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQY-QMTP 313
L GDY P + + L + +++ G + + + ++++D + +
Sbjct: 355 LQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEV 414
Query: 314 EMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI------SILDLCIGNHD 367
I + +GM++++A +Y+ + ++ YG F + +L +G
Sbjct: 415 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSA 474
Query: 368 LFMRRRKPDTMEI 380
+ K
Sbjct: 475 DAVSVYKRGEGRP 487
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 147 bits (370), Expect = 3e-38
Identities = 41/325 (12%), Positives = 93/325 (28%), Gaps = 34/325 (10%)
Query: 4 TGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQD------------QGISN 51
T R+L + + + L++ + F L + V D
Sbjct: 285 TARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAQER 344
Query: 52 QCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEAS-VLLASYAVQ 110
F + + V +L + QV + + + C E LAS
Sbjct: 345 NAPWRLFFRKEVFTPW-HNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYF 403
Query: 111 AKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSR---DEAE 167
YG ++ +P R I + + + I R + +
Sbjct: 404 VDYGSEMILERLLSLV--PTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVK 461
Query: 168 MEYLKIAQD-LDMYGVNYFPI-----SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPW 221
+ + A+ + ++ +D+ + V G+ +++ ++ +
Sbjct: 462 EDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLL--ELSF 519
Query: 222 SEIRHISFDDKKFIIKP----VDKSSPNFIFFSLKVR-MNKLYGDYDD--STYKPGMLAS 274
EI +S ++ P + F S + L + + ++A
Sbjct: 520 PEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVAL 579
Query: 275 EDLLPQRYGDYDDSTYKPGMLASED 299
+D + ++ G L D
Sbjct: 580 QDNPNPAGEESGFLSFAKGDLIILD 604
Score = 47.2 bits (111), Expect = 8e-06
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 280 QRYGDY-DDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSR---DEA 335
Q + DY + + + +P R I + + + I R +
Sbjct: 401 QYFVDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKV 460
Query: 336 EMEYLKIAQD-LDMYGVNYFPI 356
+ + + A+ + ++
Sbjct: 461 KEDVVNYARFKWPLLFSRFYEA 482
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 108 bits (270), Expect = 5e-26
Identities = 36/314 (11%), Positives = 87/314 (27%), Gaps = 27/314 (8%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQ-----GISNQCTT 55
R + +R +GL+ + K I WL V + + +
Sbjct: 51 REIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEW 110
Query: 56 PFMFLAKFYAEDVAEELVQE-VTQHLFFLQVKQAILSMDIY-CPPEASVLLASYAVQAKY 113
+ ++ ED E L ++ T F+ Q++ + ++ L ++ +
Sbjct: 111 RYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFF 170
Query: 114 GDYDDSTYKPGMLAS--------EDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDE 165
D + + P+++ + + P+ + I+ + + + +E
Sbjct: 171 KDMPHNALDKKSNFELLEKEVGLDLFFPKQMQEN--LKPKQFRKMIQQTFQQYASLREEE 228
Query: 166 AEMEYLKIAQDLDMYGVNYFPISNKKDTDL--WLGVTALGLNIYEKENKLTPKTTFPWSE 223
M++ + + ++ L + G+ P + +
Sbjct: 229 CVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIR-QLTSQDAKPTCLAEFKQ 287
Query: 224 IRHI-----SFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLL 278
IR I + I S + D D + L+
Sbjct: 288 IRSIRCLPLEEGQAVLQLGIEGAPQALSIKTSSLAEAENMA-DLIDGYCRLQGEHQGSLI 346
Query: 279 PQRYGDYDDSTYKP 292
D + P
Sbjct: 347 IHPRKDGEKRNSLP 360
Score = 48.7 bits (115), Expect = 2e-06
Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 276 DLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEA 335
D+ + + + P+++ + + P+ + I+ + + + +E
Sbjct: 172 DMPHNALDKKSNFELLEKEVGLDLFFPKQMQEN--LKPKQFRKMIQQTFQQYASLREEEC 229
Query: 336 EMEYLKIAQDLDMYGVNYFPISI-------LDLCIGNH 366
M++ + + +DL IG
Sbjct: 230 VMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPK 267
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 104 bits (261), Expect = 6e-25
Identities = 31/272 (11%), Positives = 89/272 (32%), Gaps = 27/272 (9%)
Query: 4 TGRDLFDLVCRTVGLRETWYFGLQYEDNK-GFIAWLKLDKKVQDQGISNQCTTP-----F 57
R + + ++ +GL+ + + WL LD V + + P +
Sbjct: 33 DVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWKY 92
Query: 58 MFLAKFYAEDVAEELVQE-VTQHLFFLQVKQAILSMDI-YCPPEASVLLASYAVQAKYGD 115
++ + + ++ T + F+ QVK + E ++ L ++ YG+
Sbjct: 93 ELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGE 152
Query: 116 YDDSTYKPGM--------LASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAE 167
+ + + P+ ++D + + I+ + ++R+E+
Sbjct: 153 MRGNALEKKSNYEVLEKDVGLRRFFPKSLLDS--VKAKTLRKLIQQTFRQFANLNREESI 210
Query: 168 MEYLKIAQDLDMYGVNYFPISNK--KDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIR 225
+++ +I + + F + + L + Y + P +++++
Sbjct: 211 LKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQ 270
Query: 226 HISFDDK-------KFIIKPVDKSSPNFIFFS 250
I + + +K P +
Sbjct: 271 TIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAP 302
Score = 53.7 bits (128), Expect = 5e-08
Identities = 14/142 (9%), Positives = 42/142 (29%), Gaps = 20/142 (14%)
Query: 276 DLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEA 335
++ + + P+ ++D + + I+ + ++R+E+
Sbjct: 152 EMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDS--VKAKTLRKLIQQTFRQFANLNREES 209
Query: 336 EMEYLKIAQDLDMYGVNYFPISILD--------LCIGNHDLFMRRRK----------PDT 377
+++ +I + + F ++ + K
Sbjct: 210 ILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQV 269
Query: 378 MEIQQMKSQAKEEKSRRQIERN 399
IQ S+ K+ K Q++
Sbjct: 270 QTIQYSNSEDKDRKGMLQLKIA 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 67/497 (13%), Positives = 137/497 (27%), Gaps = 146/497 (29%)
Query: 12 VCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDV--- 68
VC + ++ F I WL L + + + +
Sbjct: 170 VCLSYKVQCKMDFK---------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 69 ------AEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYK 122
+ E+ + L + +L + + ++ + K
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKI--------- 268
Query: 123 PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAE---MEYLKI-AQDLD 178
+L + + T + ++ DE + ++YL QDL
Sbjct: 269 --LLTTRFKQVTDFLSAATTTHISLDHHSM-------TLTPDEVKSLLLKYLDCRPQDL- 318
Query: 179 MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP 238
P L + A + ++ T W +H++ D II+
Sbjct: 319 -------PREVLTTNPRRLSIIAESI----RDGLAT------WDNWKHVNCDKLTTIIES 361
Query: 239 -VDKSSPN---------FIF-----FSLKVRMNKLYGDYDDSTYKPGM---------LAS 274
++ P +F + ++ ++ D + L
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFD--VIKSDVMVVVNKLHKYSLVE 418
Query: 275 EDLLPQRYGDYD---DSTYKPGMLASEDLLPQRVIDQYQMTPEM-WEDRIKI-----WYA 325
+ + K L +E L + ++D Y + +D I +Y+
Sbjct: 419 KQPKESTISIPSIYLELKVK---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 326 DHRGMSRDEAEMEY-LKIAQDLDMYGVNYFPISILDLCIGNHDLFMRR--RKPDTME--- 379
H G + LK + + F + LD F+ + R T
Sbjct: 476 -HIG---------HHLKNIEHPERM--TLFRMVFLDF------RFLEQKIRHDSTAWNAS 517
Query: 380 ------IQQMKSQAKEEKSRRQIERNKLAREKQ-------LREAAEREKCAMEQRLVQY- 425
+QQ+K + I N E+ L + E C+ L++
Sbjct: 518 GSILNTLQQLK------FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 426 --QEEIRLANEALKCVK 440
E+ + EA K V+
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588
Score = 47.5 bits (112), Expect = 8e-06
Identities = 51/354 (14%), Positives = 98/354 (27%), Gaps = 104/354 (29%)
Query: 1 WRATGRDLFDLVCRT-VGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMF 59
A + F+L C+ + R K+V D + T +
Sbjct: 254 QNAKAWNAFNLSCKILLTTR---------------------FKQVTDFLSAATTTHISL- 291
Query: 60 LAKFYAEDVAEELVQEVTQHLF--FLQVKQAILSMDIYCPPEAS----VLLASYAVQAK- 112
+ + L + + L +L + L P E L+ A +
Sbjct: 292 ------DHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRRLSIIAESIRD 339
Query: 113 -------YGDYDDSTYKPGMLAS-EDLLPQRVIDQYQMTPEMWEDRIKI--------WYA 156
+ + + +S L P + ++ I W+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFD 398
Query: 157 DHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI--SNKKDT----DLWLGVTALGLNIYEKE 210
+ + + + + L Y + K+ T ++L + N Y
Sbjct: 399 ----VIKSDVMV----VVNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 211 NKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLK--------VRMNKLYGDY 262
+ P +FD I +D+ + I LK ++ D+
Sbjct: 447 RSIVDHYNIP------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 263 D--------DSTYKPGMLASEDLLPQ--RYGDY---DDSTYKPGMLASEDLLPQ 303
DST + + L Q Y Y +D Y+ + A D LP+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Score = 28.7 bits (63), Expect = 4.9
Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 26/155 (16%)
Query: 327 HRGMSRDEAEMEYL----------KIAQDLDMYGVNYFPISIL------DLCIGNHDLFM 370
H M + E +Y + D V P SIL + + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI- 429
R T+ +Q EE ++ +E K L + E+ Y E+
Sbjct: 64 TLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 430 RLANEALKCVK--VS-EREAAEREKCAMEQRLVQY 461
RL N+ K VS + + + +E R +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 4e-06
Identities = 64/380 (16%), Positives = 117/380 (30%), Gaps = 160/380 (42%)
Query: 47 QGISNQCTTPFMF--LAKFYA--EDVAEELVQEVTQHLFFLQVKQAI-------LSMDIY 95
QG ++ F L Y + +L++ + L L ++ + ++I
Sbjct: 163 QGNTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQGLNIL 216
Query: 96 --------CPPE---ASVL----------LASYAVQAKYGDYDDSTYKPGMLA------- 127
P + S+ LA Y V AK + PG L
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-----PGELRSYLKGAT 271
Query: 128 --SEDLLP-------------------------------QRVIDQYQMTPEMWEDRIKIW 154
S+ L+ + P + ED
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED----- 326
Query: 155 YADH-----------RGMSRDEAEMEYLKIAQDLDMYGVN-YFP------IS--NKKDTD 194
++ +++++ + + + N + P IS N
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQD---YVNK------TNSHLPAGKQVEISLVNGAKN- 376
Query: 195 LWLGVT----AL-GLNIYEKENKLTPK---TTFPWSEIRHISFDDKKFIIKPVDKSSPNF 246
L V+ +L GLN+ ++ K + P+SE R + F +F+ PV +SP
Sbjct: 377 --LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKF-SNRFL--PV--ASP-- 426
Query: 247 IFFS--LKVRMNKLYGDYDDSTYKPGMLASEDL-LPQRYGDYDDSTYKPGMLASEDL--- 300
F S L + + D + ++D+ +P YD T+ G DL
Sbjct: 427 -FHSHLLVPASDLINKDLVKNNVS---FNAKDIQIPV----YD--TFD-G----SDLRVL 471
Query: 301 ---LPQRVIDQYQMTPEMWE 317
+ +R++D P WE
Sbjct: 472 SGSISERIVDCIIRLPVKWE 491
Score = 31.9 bits (72), Expect = 0.53
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 327 HRGMSRDEAEMEYLKIAQDL----DMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQ- 381
+GM D + K AQD+ D + + + SILD+ I N P + I
Sbjct: 1628 EQGMGMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINN---------PVNLTIHF 1676
Query: 382 -QMKSQAKEEK----SRRQIERNKLAREKQLREAAER 413
K + E I KL EK +E E
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Score = 31.6 bits (71), Expect = 0.74
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 21/111 (18%)
Query: 47 QGISNQCTTPFMFLAKFYAE-DVAEELVQEVTQHLF----FLQVKQAILSMDIYCPPEAS 101
QG Q M + Y A+++ H F +IL + I P +
Sbjct: 1624 QGS--Q--EQGMGMD-LYKTSKAAQDVWNRADNHFKDTYGF-----SILDIVINNPVNLT 1673
Query: 102 VLLASYAVQAKYGDYDDSTYKP---GMLASEDLLPQRVIDQYQMTPEMWED 149
+ + +Y ++ G L +E + + I++ T +
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE--INE-HSTSYTFRS 1721
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 45.1 bits (107), Expect = 4e-05
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 372 RRKPDTMEIQQMKSQAKE---EKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEE 428
RR E++++K +A+ K NK+ + ++ + +E ++ +++ +
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 429 IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
E L+ V +E E R++ QEEI + L
Sbjct: 958 YSTETEKLR-SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Score = 30.1 bits (68), Expect = 1.9
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 369 FMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRL---VQY 425
F+RR + + IQ+ + K + + +A + LR R K M R +
Sbjct: 812 FLRRTRAAII-IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII 870
Query: 426 QEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEA 471
Q+ +R + + +A +C + + + +E +L EA
Sbjct: 871 QKHVRGWLARVHYHR--TLKAIVYLQCCYRRMMAK-RELKKLKIEA 913
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 41.7 bits (98), Expect = 4e-04
Identities = 15/103 (14%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 370 MRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI 429
+ + K Q EE ++ E++ + + EK M+Q+++ +E++
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHE--MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Query: 430 RLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
A R+ + EK + ++ + +++I + +
Sbjct: 965 EEEEAA--------RQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Score = 39.8 bits (93), Expect = 0.002
Identities = 14/100 (14%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIR 430
R + + QQ++++ K+ + + +L E+ R+ + EK + ++ + +++I
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Query: 431 LANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
+ + + +E+ +E+R+ + E
Sbjct: 994 IMED--------QNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Score = 36.4 bits (84), Expect = 0.021
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
E+Q + + K R+Q +L +Q EK ++++L Q E L EA +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL---QAETELYAEAEEM 914
Query: 439 VKVSEREAAEREKCA--MEQRLVQYQEEIRLANEA 471
+ E E+ ME R+ + +E +
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Score = 36.0 bits (83), Expect = 0.034
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 370 MRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREK---QLREAAEREKCAM-----EQR 421
M+ + + ++ + +A+ E + + +L EK Q + AE E A +
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 422 LVQYQEEIRLANEALKCVKVSEREAA--EREKCAMEQRLVQYQEEIRLANEAL 472
+ QE + +E ++ E + + EK M+Q+++ +E++ A
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Score = 34.4 bits (79), Expect = 0.088
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEA 435
+T + + +E +S + L EK R AE++K + + L + E+ +
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL---EDT 1163
Query: 436 LKCVKVSEREAAEREKCAMEQ 456
L + K ++
Sbjct: 1164 LDTTATQQELRGSDYKDDDDK 1184
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 38.9 bits (90), Expect = 8e-04
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 378 MEIQQMKSQAKE-EKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEAL 436
+++++ K A++ ++ ++ R + E L A ER + + E + + +EE++ L
Sbjct: 59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS-EGKCAELEEELKTVTNNL 117
Query: 437 KCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
K ++ E + + E+ + +
Sbjct: 118 KSLEDKVEELLSKNY--------HLENEVARLKKLV 145
Score = 31.6 bits (71), Expect = 0.27
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 377 TMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEAL 436
IQ ++ + + R KL ++ + +ER +E R + +E++ + L
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 61
Query: 437 KCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
K K + A+R+ + ++LV + ++ A E
Sbjct: 62 KEAKHIAED-ADRKYEEVARKLVIIESDLERAEE 94
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 38.3 bits (88), Expect = 0.005
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 379 EIQQMKSQAKEEKSRRQIE-RNKLAREKQLREA-AEREKCAMEQRLVQYQEEIRLANEAL 436
++ AK E R + E R +L R+K L ++ AE+ + + + E + +A E+
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLE-----LEAMSMAVEST 719
Query: 437 KCVKVSEREAAEREKCAMEQRLVQYQ---EEIRLANEA 471
K AE + E ++Q + + + + EA
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Score = 35.9 bits (82), Expect = 0.034
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQ---E 427
R++ D E ++ + + E ++ + + + AE + E ++Q + +
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749
Query: 428 EIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEE 464
+ + EA RE A + V ++
Sbjct: 750 ALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Score = 30.5 bits (68), Expect = 1.6
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 376 DTMEIQQMKSQAKEEKSRRQIERNKL---AREKQLREAAEREKCAMEQRLVQYQEEIRLA 432
+ + + + + + +N L + + Q E ++ QR VQ EI
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667
Query: 433 NEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
++ ++R E Q+++ E + E L
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELL 707
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.005
Identities = 15/84 (17%), Positives = 41/84 (48%), Gaps = 19/84 (22%)
Query: 374 KPDTM--EIQQMKSQAKEEKSRRQIERNKLAREK--QLREAAEREKCAMEQRLVQYQEEI 429
+ D + E + ++ + +EE+ +R E + ++ + RE A+++ +E+ + E++
Sbjct: 76 QADRLTQEPESIR-KWREEQRKRLQELDAASKVMEQEWREKAKKD---LEEWNQRQSEQV 131
Query: 430 -------RLANEALKCVKVSEREA 446
R+A++A + +A
Sbjct: 132 EKNKINNRIADKAF----YQQPDA 151
Score = 36.3 bits (83), Expect = 0.010
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 380 IQQMKSQAKE-EKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI----RLANE 434
I Q +E E R+ E + K+L+E K ++ + ++++ + +E
Sbjct: 74 IAQADRLTQEPESIRKWREE----QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 435 ALKCVKVSEREAAE 448
++ K++ R A +
Sbjct: 130 QVEKNKINNRIADK 143
Score = 34.7 bits (79), Expect = 0.030
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 401 LAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQ 460
+A+ +L + E + E++ ++ ++ + A K ++ RE A+++ +E+ +
Sbjct: 74 IAQADRLTQEPESIRKWREEQ----RKRLQELDAASKVMEQEWREKAKKD---LEEWNQR 126
Query: 461 YQEEI-------RLANEAL 472
E++ R+A++A
Sbjct: 127 QSEQVEKNKINNRIADKAF 145
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 37.2 bits (85), Expect = 0.011
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 369 FMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEE 428
+++ ++ T I Q E++ ++ER K + + + EQ + Q +
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523
Query: 429 IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
+ + L ++R +E+ + QE+ +L E
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLAL--KLQEQEQLLKEGF 565
Score = 32.2 bits (72), Expect = 0.40
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 370 MRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI 429
+ E+Q+ Q E+K R E K EK + + K ++ QE+
Sbjct: 499 AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQE 558
Query: 430 RLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIR 466
+L E + +E M+ + Q ++R
Sbjct: 559 QLLKEGFQ-----------KESRIMKNEIQDLQTKMR 584
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.015
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 86 KQAI--L--SMDIYCPPEASVLLASYAVQA 111
KQA+ L S+ +Y A L A++A
Sbjct: 19 KQALKKLQASLKLYADDSAPAL----AIKA 44
Score = 27.2 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 13/36 (36%)
Query: 42 KKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVT 77
KK+Q L K YA+D A L + T
Sbjct: 23 KKLQAS------------L-KLYADDSAPALAIKAT 45
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 32.6 bits (74), Expect = 0.058
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 377 TMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAER------EKCAMEQRLVQYQEEIR 430
+ME + K Q + I+R + A E ++A +R E+ ++++L ++E+
Sbjct: 3 SMEAIKKKMQMLKLDKENAIDRAEQA-EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61
Query: 431 LANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
+E++K + + E AE++ E + I+L E
Sbjct: 62 KYSESVKEAQ-EKLEQAEKKATDAEAEVASLNRRIQLVEE 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 33.3 bits (75), Expect = 0.072
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
+ +K + + + R +A+E +LR AE E + + + L +EA
Sbjct: 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS--LFDEANNM 102
Query: 439 VKV--SEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
V E+ A E + ++L + + L
Sbjct: 103 VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 33.1 bits (75), Expect = 0.15
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
++Q +K + R + + E E +++++L ++E+ +EALK
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
Query: 439 VKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
+ + E AE++ E + I+L E L
Sbjct: 67 AQ-EKLELAEKKATDAEADVASLNRRIQLFEEEL 99
Score = 32.3 bits (73), Expect = 0.27
Identities = 15/94 (15%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
++++ + +A+ + + ++ ++ E + Q+ +Y+EEI++ ++ LK
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 234
Query: 439 VKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
+ + E AER +E+ + ++E+
Sbjct: 235 AE-TRAEFAERSVTKLEKSIDDLEDELYAQKLKY 267
Score = 31.2 bits (70), Expect = 0.62
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
++++ K A++ + + KL + E AE E + + +EEI+ LK
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS 206
Query: 439 VKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
++ + +++E +Y+EEI++ ++ L
Sbjct: 207 LEAQAEKYSQKED--------KYEEEIKVLSDKL 232
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 32.3 bits (73), Expect = 0.17
Identities = 19/95 (20%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 379 EIQQMKSQAKE-EKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALK 437
++Q++ + +E +E +K L A ER + + E + + +EE++ LK
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELS-EGKSAELEEELKTVTNNLK 59
Query: 438 CVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
++ + +++E +Y+EEI++ ++ L
Sbjct: 60 SLEAQAEKYSQKED--------KYEEEIKVLSDKL 86
Score = 31.1 bits (70), Expect = 0.34
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 377 TMEIQQMKSQAKEEKSRRQIE--RNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANE 434
++E Q K KE+K +I+ +KL + E AER +E+ + ++E+
Sbjct: 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119
Query: 435 ALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
K + E + E + + + + E+ +
Sbjct: 120 KYKAIS-EEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 29.9 bits (67), Expect = 1.1
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 379 EIQQMKSQAKE-EKSRRQIERNKLAREKQLREAAEREKCA------MEQRLVQYQEEIRL 431
E+ ++K + E+ E E++L+ K Q+ +Y+EEI++
Sbjct: 22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKV 81
Query: 432 ANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
++ LK + + E AER +E+ + ++E+
Sbjct: 82 LSDKLKEAE-TRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.6 bits (69), Expect = 0.29
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 380 IQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCV 439
+Q +K + R + ++ + E + +E++L ++ E L
Sbjct: 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70
Query: 440 KVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
+ AE E + I+L E
Sbjct: 71 E-DSLLFAEENAAKAESEVASLNRRIQLVEE 100
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.5 bits (73), Expect = 0.30
Identities = 16/95 (16%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 335 AEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRR 394
A + Y + + + + P++ ++ H M++ + + ++ +MK + K +K +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQK-LK 354
Query: 395 QIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI 429
E R +Q+++ E + +E++ Q+++E
Sbjct: 355 DSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEK 389
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 32.0 bits (73), Expect = 0.38
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 376 DTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREA---AEREKCAMEQRLVQYQEEIRLA 432
D+ ++ Q S A + ++ + R L R+++L ++ A+R+ + Q E + A
Sbjct: 89 DSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRA 148
Query: 433 NEALKCVKVSEREAAEREK 451
+ L + +
Sbjct: 149 DARLAQLGAKGGGTLQAGG 167
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.1 bits (70), Expect = 0.82
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 19/93 (20%)
Query: 380 IQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCV 439
+ EE + + L +E R AE +E R +ALK
Sbjct: 155 VTSYNKILTEEDLQMRRLATALQKEIGERTHAETV----------MVKEYRDKIDALK-- 202
Query: 440 KVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
A E E+ M++ + QE + + L
Sbjct: 203 -----NAIEVERDGMQEEAI--QEIAGMTADVL 228
Score = 29.9 bits (67), Expect = 2.2
Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 382 QMKSQAKEEKSRRQIERNKLAREKQLREAAEREKC-----AMEQRLVQYQEEIRLANEAL 436
Q K + E++ R ++ R K + + + E E+ ++ +++ + N+A+
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 437 KCVKVSEREAAEREKCAMEQRLVQYQEEIRLANE 470
++ E + +Q + R E
Sbjct: 156 T--SYNKILTEEDLQMRRLATALQKEIGERTHAE 187
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 30.3 bits (67), Expect = 0.99
Identities = 13/102 (12%), Positives = 28/102 (27%)
Query: 370 MRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEI 429
+ + + +++R+ E L + RE + + +
Sbjct: 137 ENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMA 196
Query: 430 RLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEA 471
+ REA Q ++ EE+R E
Sbjct: 197 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKEL 238
Score = 29.5 bits (65), Expect = 1.9
Identities = 17/101 (16%), Positives = 35/101 (34%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIR 430
+R + + ++ K ++ K+ K+ REA Q ++ EE+R
Sbjct: 72 KREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVR 131
Query: 431 LANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEA 471
+ + +K + +YQE L + A
Sbjct: 132 QRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLA 172
>3juw_A Probable GNAT-family acetyltransferase; structural genomics,
APC60242, acetyltransferas protein structure initiative;
HET: MSE; 2.11A {Bordetella pertussis}
Length = 175
Score = 29.9 bits (68), Expect = 1.0
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 145 EMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGL 204
M R A HR ++ D+A + D Y ++ + + + G G
Sbjct: 31 AMERQR---DEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLD-PVSGEMRGEA--GF 84
Query: 205 NIYEKE 210
+
Sbjct: 85 QFRRRG 90
Score = 27.2 bits (61), Expect = 10.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 314 EMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPI 356
M R A HR ++ D+A + D Y ++ +
Sbjct: 31 AMERQR---DEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYL 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.0 bits (71), Expect = 1.0
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQ----------------RL 422
EI ++ + + ++ + ER L + ++ + + + +E L
Sbjct: 438 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGEL 497
Query: 423 VQYQEEIRLANEALKCVK-----VSEREAAE 448
+ + E+ +E L+ + V+E + AE
Sbjct: 498 PKLEAEVEALSEKLRGARFVRLEVTEEDIAE 528
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 29.9 bits (68), Expect = 1.9
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIR 430
RR+ E+++MK++ +E++++ R K A+E +++ V +
Sbjct: 3 RRKSCIVKEMEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPL 62
Query: 431 LANEALK--CVKV-------SEREAAEREKC 452
+ ++ + V +++E A++E
Sbjct: 63 TVTDPIEEHRICVCVRKRPLNKQELAKKEID 93
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 30.0 bits (68), Expect = 2.0
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 152 KIWYADHRG---MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYE 208
KIW H G + ++ + + + I+ + W+G G+ IY
Sbjct: 462 KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521
Query: 209 KENK----LTPKTTFPWSEIRHISFDDKKFI 235
+ + F + I I K +
Sbjct: 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQM 552
Score = 28.1 bits (63), Expect = 9.0
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 24/82 (29%)
Query: 191 KDTDLWLGVTALGLNIYEKENKLTPKTTFPWS----EIRHISFDD--------------- 231
LW+G G+N++E ++ + D
Sbjct: 372 GQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISY 431
Query: 232 -----KKFIIKPVDKSSPNFIF 248
KKF I ++K+ +
Sbjct: 432 YNTRLKKFQIIELEKNELLDVR 453
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 27.1 bits (60), Expect = 2.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 390 EKSRRQIERNKLA------REKQLREAAEREKCAMEQRLVQYQEEI 429
EK R + ERNK+A R ++L + + E +E Q EI
Sbjct: 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEI 46
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 30.0 bits (68), Expect = 2.1
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 154 WYAD--HRGMSRDEAEMEYLK-IAQDLDMYGVN-YFPISNKKDTDLWLGVTALGLNIYEK 209
++ D +G +EY + +A LD GVN Y + K D + + G
Sbjct: 289 YFTDIVSKG--SSIINVEYRRDLANRLDWLGVNYYSRLVYKIVDDKPIILHGYGFLCTPG 346
Query: 210 ENKLT--PKTTFPW 221
P + F W
Sbjct: 347 GISPAENPCSDFGW 360
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 29.2 bits (66), Expect = 2.4
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 329 GMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAK 388
+++ Q L V P+ IG H + +I+ ++ QA
Sbjct: 125 SQEPQRMSRNFVRYVQGLKKKKVIVIPVG-----IGPH--------ANLKQIRLIEKQAP 171
Query: 389 EEK 391
E K
Sbjct: 172 ENK 174
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 29.6 bits (66), Expect = 2.7
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 408 REAAEREKCAMEQRLVQYQEEIR-LANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIR 466
R A+R A EQ+ + E + LK +S AERE A R + Q +
Sbjct: 492 RTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQ 551
Query: 467 LANEAL 472
L +E L
Sbjct: 552 LTDEVL 557
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.7 bits (66), Expect = 2.9
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 5/151 (3%)
Query: 49 ISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEAS---VLLA 105
++ TP + + +E + + + +K ++ +IY P+ +
Sbjct: 1107 VAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPED 1166
Query: 106 SYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDE 165
+Q + D+ + S LL + +D+ M + ++ + D
Sbjct: 1167 EEIIQLHFSLLDEEAEQSFDQQSPWLL-RLELDRAAMN-DKDLTMGQVGERIKQTFKNDL 1224
Query: 166 AEMEYLKIAQDLDMYGVNYFPISNKKDTDLW 196
+ + L + P S +T+
Sbjct: 1225 FVIWSEDNDEKLIIRCRVVRPKSLDAETEAE 1255
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 28.5 bits (63), Expect = 3.1
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 379 EIQQMKSQAKEEKSRRQIE----RNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANE 434
E+Q+ + KS+ + + L E++ R ++ R+ QEE++
Sbjct: 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111
Query: 435 ALKCVKVSEREAAEREKCAMEQRLVQYQEEIR 466
L E E E+ + L ++E
Sbjct: 112 NL--------EKVEGERKEAQDMLNHSEKEKN 135
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 27.1 bits (61), Expect = 3.9
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 30/86 (34%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKC 438
E+ +K + E+Q+RE E YQ+
Sbjct: 2 EVDALKGT-------------NESLERQMREMEENFAVEAAN----YQD----------- 33
Query: 439 VKVSEREAAERE-KCAMEQRLVQYQE 463
+ + + K M + L +YQ+
Sbjct: 34 -TIGRLQDEIQNMKEEMARHLREYQD 58
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 165 EAEMEYLKIAQDLDMYGVN-YFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSE 223
E+EY++ D G+N Y + K + + + ++ P + W +
Sbjct: 300 AEEVEYIR--GTHDFLGINFYTALLGKSGVEGYEPSRYRDSGVILTQDAAWPISASSWLK 357
Query: 224 I 224
+
Sbjct: 358 V 358
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 28.3 bits (63), Expect = 6.4
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 324 YADHRGMSRDEAEMEYLKIAQD-----LDMYGVNYFPISILDLCIGNHDLFMRRRKPDTM 378
+S ++A ++ +D D++GV + + F+ K D
Sbjct: 625 MTQQGKLSEEDAG-VFISRLRDDNRYHEDIFGVTLRTYEVTNRLRSESIAFIEESKKDAD 683
Query: 379 EI 380
E+
Sbjct: 684 EV 685
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 26.4 bits (59), Expect = 7.0
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 409 EAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAA-EREKCAMEQRLVQYQE 463
+ + A E +L ++ + + + ++E+E + M+Q+L +YQE
Sbjct: 6 SQLQCQLAAKEAKLRDLEDSLARERDTSRR-LLAEKEREMAEMRARMQQQLDEYQE 60
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 27.2 bits (60), Expect = 7.1
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 148 EDRIKIWYADHRGMSRDEAE 167
D K WY +SRD+A
Sbjct: 16 SDTSKFWY--KPHLSRDQAI 33
Score = 27.2 bits (60), Expect = 7.1
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 317 EDRIKIWYADHRGMSRDEAE 336
D K WY +SRD+A
Sbjct: 16 SDTSKFWY--KPHLSRDQAI 33
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET:
EPE; 2.50A {Pseudomonas aeruginosa}
Length = 400
Score = 28.1 bits (63), Expect = 7.1
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 24/100 (24%)
Query: 356 ISILDLCIGNHDLFMRR----------RKPDTMEIQQ---MKSQAKEEKSRRQIERNKLA 402
S +D + + M KP ++E + A+ + RQIE +L
Sbjct: 83 SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQDLPRQIEVAELP 142
Query: 403 REKQLREAAEREKCAMEQRLVQYQEEIRLAN------EAL 436
+ + + YQ ++ L E L
Sbjct: 143 SVADVVRGLDN-----GEFEAYYQPKVALDGGGLIGAEVL 177
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.4 bits (60), Expect = 7.2
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 384 KSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSE 443
S K+ K+ R+I L R+ + E ++ V+ Q I +L +K
Sbjct: 37 ASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPI--TGASLDLIKERR 94
Query: 444 REAAEREKCAMEQRLVQYQEEIRLANEA 471
E K E++L +E+ + A
Sbjct: 95 SLKPEVRKANREEKLKANKEKKKAEKAA 122
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 7.4
Identities = 5/68 (7%), Positives = 18/68 (26%), Gaps = 8/68 (11%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIR 430
R + + +++ + E ++ + M+ ++ +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIAR--------MQAQMQMQMQGGD 351
Query: 431 LANEALKC 438
AL
Sbjct: 352 GDGGALGH 359
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 28.3 bits (63), Expect = 7.5
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 235 IIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGM 294
++ P + N++F L++ G +D G Y + G
Sbjct: 46 LVSPTRVPNANYLFVDLEIGPEAQPGSFDIVFKGDGR--------SERYRYRLLAREQGS 97
Query: 295 LASEDLLPQRVIDQYQMTPE 314
+ P I YQ+ P+
Sbjct: 98 AQRQGFGPGDAI--YQIMPD 115
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 27.9 bits (63), Expect = 7.9
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 165 EAEMEYLKIAQDLDMYGVN-YFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSE 223
E+E + D +G+N Y + L + +L ++ W +
Sbjct: 286 PEEIEL--VKGSSDFFGLNTYTTHLVQDGGSDELAGFVKTGHTRADGTQLGTQSDMGWLQ 343
Query: 224 I 224
Sbjct: 344 T 344
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 26.5 bits (59), Expect = 8.3
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 148 EDRIKIWYADHRGMSRDEAEMEYLKIAQD 176
+ W H ++R +AE + +D
Sbjct: 6 SGMVPCWN--HGNITRSKAEELLSRTGKD 32
Score = 26.5 bits (59), Expect = 8.3
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 317 EDRIKIWYADHRGMSRDEAEMEYLKIAQD 345
+ W H ++R +AE + +D
Sbjct: 6 SGMVPCWN--HGNITRSKAEELLSRTGKD 32
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 27.9 bits (63), Expect = 8.4
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 165 EAEMEYLKIAQDLDMYGVN-YFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPW 221
+ +M I + +D G+N Y K D D V+ + ++ PKT W
Sbjct: 299 KDDMSE--IQEKIDFVGLNYYSGHLVKFDPDAPAKVSFVERDL--------PKTAMGW 346
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 26.0 bits (58), Expect = 8.6
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 393 RRQIERNKLAREKQLREAAEREKCA-MEQRLVQYQEEIRLANEALKCVKVSEREAA-ERE 450
R L + Q A E+ +E +E + ++++E
Sbjct: 5 HHHSSRENLYFQGQKESRACLERIQELEDL---LAKEKDNSRR-----MLTDKEREMAEI 56
Query: 451 KCAMEQRLVQYQE 463
+ M+Q+L Y++
Sbjct: 57 RDQMQQQLNDYEQ 69
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 27.8 bits (63), Expect = 9.1
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 165 EAEMEYLKIAQDLDMYGVN-YFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPW 221
+ +ME I Q +D G+N Y N+ + G+ + E + PKT W
Sbjct: 277 DGDME--LIHQPIDFIGINYYTSSMNRYNPGEAGGMLS-----SEAISMGAPKTDIGW 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,491,838
Number of extensions: 466101
Number of successful extensions: 1565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1455
Number of HSP's successfully gapped: 196
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)