RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy586
(472 letters)
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 139 bits (351), Expect = 2e-40
Identities = 86/111 (77%), Positives = 96/111 (86%)
Query: 67 DVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGML 126
+ EELVQE+TQHLFFLQVK+ IL IYCPPEASVLLASYAVQAKYGDYD S +K G L
Sbjct: 1 NAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFL 60
Query: 127 ASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 177
A E+LLP+RVI+ YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL
Sbjct: 61 AQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
Score = 83.0 bits (205), Expect = 5e-20
Identities = 56/98 (57%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 249 FSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQ 308
F L+V+ L +LAS + +YGDYD S +K G LA E+LLP+RVI+
Sbjct: 15 FFLQVKKQILDEKIYCPPEASVLLASY-AVQAKYGDYDPSVHKRGFLAQEELLPKRVINL 73
Query: 309 YQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 346
YQMTPEMWE+RI WYA+HRG +RDEAEMEYLKIAQDL
Sbjct: 74 YQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 133 bits (335), Expect = 3e-38
Identities = 68/111 (61%), Positives = 94/111 (84%)
Query: 67 DVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGML 126
DV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++ +K G L
Sbjct: 1 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYL 60
Query: 127 ASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 177
A + LLPQRV++Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL
Sbjct: 61 AGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
Score = 78.0 bits (192), Expect = 3e-18
Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 248 FFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVID 307
F L+V+ L D +LAS + +YGD++ +K G LA + LLPQRV++
Sbjct: 14 LFFLQVKEGILNDDIYCPPETAVLLASY-AVQSKYGDFNKEVHKSGYLAGDKLLPQRVLE 72
Query: 308 QYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 346
Q+++ + WE+RI++W+ +HRGM R++A +EYLKIAQDL
Sbjct: 73 QHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 118 bits (296), Expect = 1e-32
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
KF+ D + V +L ++Q + IL+ + + A Y Q ++G +++ +
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKH 61
Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMY 180
KPG L +D LP+ + + E +I + + + MS EA++ Y+K+A+ L Y
Sbjct: 62 KPGFLELKDFLPK------EYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
Score = 67.6 bits (165), Expect = 2e-14
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 246 FIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRV 305
++ R + L G + S K A ++G +++ +KPG L +D LP+
Sbjct: 18 LNLLYVQARDDILNGSHPVSFDKACEFAGYQCQ-IQFGPHNEQKHKPGFLELKDFLPK-- 74
Query: 306 IDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMY 349
+ + E +I + + + MS EA++ Y+K+A+ L Y
Sbjct: 75 ----EYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 117 bits (294), Expect = 2e-32
Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 71 ELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASED 130
+L +++T++ LQ++Q I++ + C LL SY +Q++ GDYD + ++
Sbjct: 5 QLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFK 64
Query: 131 LLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMY 180
L P + + E+++ + +R M+ +A++E+L+ A+ L MY
Sbjct: 65 LAPNQT--------KELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
Score = 66.9 bits (163), Expect = 2e-14
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 281 RYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYL 340
GDYD + ++ L P + + E+++ + +R M+ +A++E+L
Sbjct: 46 ELGDYDPELHGVDYVSDFKLAPNQT--------KELEEKVMELHKSYRSMTPAQADLEFL 97
Query: 341 KIAQDLDMY 349
+ A+ L MY
Sbjct: 98 ENAKKLSMY 106
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 104 bits (262), Expect = 5e-28
Identities = 53/80 (66%), Positives = 71/80 (88%)
Query: 178 DMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
+MYGVNYF I NKK ++LWLGV ALGLNIYE+ ++LTPK FPWSEIR+ISF+DKKF+IK
Sbjct: 1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60
Query: 238 PVDKSSPNFIFFSLKVRMNK 257
P+DK +P+F+F++ ++R+NK
Sbjct: 61 PIDKKAPDFVFYAPRLRINK 80
Score = 36.7 bits (85), Expect = 8e-04
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 357 SILDLCIGNHDLFMRRRKP 375
IL LC+GNH+L+MRRRKP
Sbjct: 81 RILALCMGNHELYMRRRKP 99
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 104 bits (261), Expect = 6e-28
Identities = 51/80 (63%), Positives = 64/80 (80%)
Query: 178 DMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIK 237
+MYGVNYF I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IK
Sbjct: 1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60
Query: 238 PVDKSSPNFIFFSLKVRMNK 257
P+DK F F S K+R+NK
Sbjct: 61 PLDKKIDVFKFNSSKLRVNK 80
Score = 33.3 bits (76), Expect = 0.011
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 357 SILDLCIGNHDLFMRRRK 374
IL LCIGNHDLFMRRRK
Sbjct: 81 LILQLCIGNHDLFMRRRK 98
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 84.8 bits (210), Expect = 5e-21
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
TG+ LFD V +T+GLRE W+FGLQY+D KGF WLKL+KKV Q + + F F A
Sbjct: 20 NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79
Query: 62 KFYAE 66
KFY E
Sbjct: 80 KFYPE 84
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 82.8 bits (204), Expect = 9e-20
Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 62 KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDI-YCPPEASVLLASYAVQAKYGDYDDST 120
K + E+ + T + F+ QVK + E ++ L ++ YG+ +
Sbjct: 1 KGFLNQFTED---KPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNA 57
Query: 121 --------YKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLK 172
+ P+ + + + I+ + ++R+E+ +++ +
Sbjct: 58 LEKKSNYEVLEKDVGLRRFFPKSL--LDSVKAKTLRKLIQQTFRQFANLNREESILKFFE 115
Query: 173 IAQDLDMY 180
I + +
Sbjct: 116 ILSPVYRF 123
Score = 57.8 bits (139), Expect = 5e-11
Identities = 13/125 (10%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 233 KFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDST--- 289
K + + P FF +V+ + + D + + + + YG+ +
Sbjct: 1 KGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEK 60
Query: 290 -----YKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQ 344
+ P+ + + + I+ + ++R+E+ +++ +I
Sbjct: 61 KSNYEVLEKDVGLRRFFPKSL--LDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILS 118
Query: 345 DLDMY 349
+ +
Sbjct: 119 PVYRF 123
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 77.1 bits (190), Expect = 3e-18
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
+ G+DLFDLVCRT+GLRETW+FGLQY K +AWLK+DKKV D +S + F FLA
Sbjct: 21 KWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 79
Query: 62 KFYAE 66
KFY E
Sbjct: 80 KFYPE 84
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 75.9 bits (187), Expect = 7e-18
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 2 RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
A G+DL VC + L E YFGL DN WL K+++ Q F F
Sbjct: 20 HAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWN--FTFNV 77
Query: 62 KFY 64
KFY
Sbjct: 78 KFY 80
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 74.9 bits (184), Expect = 2e-17
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 181 GVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240
GV+ + + D+ LGV + GL +Y+ + ++ FPW ++ IS+ F IK
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRI---NRFPWPKVLKISYKRSSFFIKIRP 57
Query: 241 K----SSPNFIFFSLKVRMNK 257
F R K
Sbjct: 58 GEQEQYESTIGFKLPSYRAAK 78
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 92
Score = 37.5 bits (87), Expect = 3e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 181 GVNYFPI-----SNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFI 235
GV++F + K LG+T + +++ K + + + I+ + K F
Sbjct: 1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQ-EWSLTNIKRWAASPKSFT 59
Query: 236 IKPVDKSSPNFIF 248
+ D +
Sbjct: 60 LDFGDYQDGYYSV 72
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 32.9 bits (75), Expect = 0.030
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 384 KSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSE 443
+ Q K E + + + + K L E E E+ +++ + + I++A E L S
Sbjct: 46 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105
Query: 444 REAAEREKCAMEQRLVQYQ---EEIRLANEA 471
+E E AM +RL + EE+R E
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKEL 136
Score = 30.2 bits (68), Expect = 0.26
Identities = 13/99 (13%), Positives = 30/99 (30%)
Query: 366 HDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQY 425
D + + ++ + + E + E+ + RE + E +
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Query: 426 QEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEE 464
Q+ + E++K A E R + +E
Sbjct: 100 QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 33.6 bits (76), Expect = 0.040
Identities = 15/94 (15%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 372 RRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRL 431
R K ++ + + K+ + +E+ + + ++ L++ E+ + Q L +E+ R
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL---KEQERT 266
Query: 432 ANEALKCVKVSEREAAEREKCAMEQRLVQYQEEI 465
L+ + +E ++E M+ + Q ++
Sbjct: 267 LALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 32.0 bits (72), Expect = 0.12
Identities = 16/98 (16%), Positives = 39/98 (39%)
Query: 369 FMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEE 428
+++ ++ T I Q E++ ++ER K + + + EQ + Q +
Sbjct: 181 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 240
Query: 429 IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIR 466
+ + L ++R +E+ +Q QE++
Sbjct: 241 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
Score = 28.9 bits (64), Expect = 1.4
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 363 IGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRL 422
G + LF+++ + ++++ + + + + + K+ A +
Sbjct: 147 PGGYRLFVQKLQ----DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK 202
Query: 423 VQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL 472
+ E R+ E+ + E + + MEQ+ YQE ++ E +
Sbjct: 203 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 252
Score = 27.0 bits (59), Expect = 5.0
Identities = 8/69 (11%), Positives = 30/69 (43%)
Query: 369 FMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEE 428
+ + ++ + K ++ +E ++ E+ + R + L+E ++++ +E
Sbjct: 222 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Query: 429 IRLANEALK 437
+ + +K
Sbjct: 282 FQKESRIMK 290
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 31.9 bits (72), Expect = 0.14
Identities = 10/106 (9%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Query: 366 HDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQY 425
+ +R + + I + + E+K ++ R +
Sbjct: 131 DEQRRQRHDLERIRIANDTTLSPEQK-AARLAALDAQLTPDERAQQAALHAQQDAVTKIA 189
Query: 426 QEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEA 471
+ A ++++ E A + + + R A
Sbjct: 190 DLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYA 235
Score = 27.7 bits (61), Expect = 2.9
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 370 MRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAA-EREKCAMEQRLVQYQEE 428
+ ++ +I ++ R L E R A +++ A + R Y E
Sbjct: 178 LHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAE 237
Query: 429 IRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLA 468
++ ++ R +Q E IR A
Sbjct: 238 RDRIAAQ----GLAPQDRDARIAQLRQQTFTAPGEAIRAA 273
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 196 WLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKS 242
L +T + +++ +N ++P S +R D F +
Sbjct: 22 ALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRMC 68
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 26.3 bits (58), Expect = 3.0
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 24/91 (26%)
Query: 90 LSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWED 149
L I P E + L Y Q+ G+ + +P + D
Sbjct: 16 LPRTINLPNELKLDLYKYYKQSTIGNCN--IKEPSAH-------------------KYID 54
Query: 150 RIKIWYA--DHRGMSRDEAEMEYLKIAQDLD 178
R K + A ++R++A+ Y+ I ++
Sbjct: 55 RKK-YEAWKSVENLNREDAQKRYVDIVSEIF 84
Score = 26.3 bits (58), Expect = 3.0
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 313 PEMWEDRIKI-WYA--DHRGMSRDEAEMEYLKIAQDLD 347
P + + + A ++R++A+ Y+ I ++
Sbjct: 47 PSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIF 84
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 26.0 bits (57), Expect = 3.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 PEMWEDRIKI-WYA--DHRGMSRDEAEMEYLKIAQDLD-MYGV 182
P M + + K W A + +G S+++A Y+ ++L YG+
Sbjct: 44 PGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI 86
Score = 26.0 bits (57), Expect = 3.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 313 PEMWEDRIKI-WYA--DHRGMSRDEAEMEYLKIAQDLD-MYGV 351
P M + + K W A + +G S+++A Y+ ++L YG+
Sbjct: 44 PGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI 86
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 26.4 bits (57), Expect = 4.5
Identities = 11/117 (9%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 282 YGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLK 341
+ E +R+ ++ + E +
Sbjct: 38 NKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE--KMFGEDMYDLFP 95
Query: 342 IAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIER 398
+ +D+ + V ++ C H T EI +K + + + +
Sbjct: 96 VPEDVRILKVVVIEDWNVNACNKEH-------TKTTGEIGPIKIRKVRFRKSKGLLE 145
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.3 bits (60), Expect = 4.9
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 327 HRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKS- 385
R + E E E LK +D D + + + + +++++
Sbjct: 259 ERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA 318
Query: 386 QAKEEKSRRQIERNKLAREKQLREAAE---REKCAMEQRLVQYQEEIRLANEALKCVKVS 442
Q + ++ RR+IE + R+ L AAE E +E + E++R ++V+
Sbjct: 319 QHRLDEVRREIELAE--RQYDLNRAAELRYGELPKLEAEVEALSEKLR--GARFVRLEVT 374
Query: 443 EREAAE 448
E + AE
Sbjct: 375 EEDIAE 380
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.9 bits (59), Expect = 5.6
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 379 EIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIR 430
+ Q +SQ K + + + KL + ++ AE++ + + + +IR
Sbjct: 270 QCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIR 321
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId:
7130]}
Length = 166
Score = 26.0 bits (57), Expect = 7.0
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 371 RRRKPDTMEIQQMKSQAKEEKSRRQIERNKLARE------KQLREAAEREKCAMEQRLVQ 424
A + + + E + AR+ ++LR+A + +
Sbjct: 48 DSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDK 107
Query: 425 YQEEIR--------LANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEA 471
Q ++ LA E ++ + ++ A + K A + + +E + +EA
Sbjct: 108 LQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHEA 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,833,971
Number of extensions: 90413
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 47
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)