Query psy5860
Match_columns 138
No_of_seqs 151 out of 785
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:54:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.8 1.8E-18 3.9E-23 138.4 8.3 65 22-86 106-171 (228)
2 KOG3960|consensus 99.8 6.5E-18 1.4E-22 137.8 10.3 64 22-86 115-178 (284)
3 PF00010 HLH: Helix-loop-helix 99.6 7.5E-16 1.6E-20 98.1 7.3 53 25-77 1-55 (55)
4 KOG3898|consensus 99.6 3.1E-16 6.8E-21 128.2 6.1 65 21-85 68-132 (254)
5 cd00083 HLH Helix-loop-helix d 99.6 1.2E-14 2.7E-19 92.8 8.0 57 24-80 3-59 (60)
6 smart00353 HLH helix loop heli 99.5 1.6E-13 3.4E-18 86.1 7.2 52 30-81 1-52 (53)
7 KOG4395|consensus 99.4 2.7E-13 5.8E-18 111.0 6.1 63 23-85 172-234 (285)
8 KOG4447|consensus 99.4 3.6E-13 7.8E-18 103.3 2.8 61 22-83 75-135 (173)
9 KOG0561|consensus 99.3 1.6E-11 3.4E-16 103.0 8.4 63 15-79 51-113 (373)
10 KOG3910|consensus 99.3 8.7E-12 1.9E-16 109.9 6.2 73 20-92 521-594 (632)
11 KOG1319|consensus 99.0 1.3E-09 2.8E-14 86.5 8.2 69 24-93 61-133 (229)
12 KOG1318|consensus 98.8 1.5E-08 3.2E-13 88.1 8.3 66 16-81 224-290 (411)
13 KOG2483|consensus 98.4 8.9E-07 1.9E-11 72.1 6.2 59 23-81 57-115 (232)
14 KOG2588|consensus 98.2 2.8E-06 6E-11 79.9 6.4 56 24-81 275-330 (953)
15 KOG3561|consensus 97.9 2.1E-05 4.6E-10 73.4 5.9 59 21-79 16-75 (803)
16 KOG4304|consensus 97.8 2.7E-05 5.8E-10 64.0 4.0 55 25-79 32-91 (250)
17 KOG4447|consensus 97.3 0.00013 2.9E-09 56.4 2.2 57 22-79 18-75 (173)
18 PLN03217 transcription factor 95.9 0.024 5.2E-07 40.0 5.2 48 35-82 17-67 (93)
19 KOG3558|consensus 91.2 0.35 7.7E-06 45.2 4.9 52 31-84 52-105 (768)
20 KOG3560|consensus 81.9 1.4 3E-05 40.7 3.1 45 40-85 40-89 (712)
21 KOG3559|consensus 70.9 4.6 0.0001 36.3 3.3 46 33-78 9-55 (598)
22 KOG4395|consensus 58.5 2.4 5.2E-05 35.5 -0.7 45 22-78 79-130 (285)
23 PF05687 DUF822: Plant protein 56.6 17 0.00036 28.1 3.6 29 24-52 10-38 (150)
24 PF04839 PSRP-3_Ycf65: Plastid 43.3 12 0.00027 23.7 0.9 37 42-78 11-47 (49)
25 PRK02724 hypothetical protein; 39.9 34 0.00075 24.9 2.9 38 41-78 44-81 (104)
26 CHL00163 ycf65 putative riboso 36.2 43 0.00093 24.2 2.8 39 41-79 39-77 (99)
27 PF13815 Dzip-like_N: Iguana/D 31.5 59 0.0013 23.4 3.0 24 62-85 59-83 (118)
28 PF10465 Inhibitor_I24: PinA p 28.4 55 0.0012 24.8 2.4 17 64-80 123-139 (140)
29 KOG1189|consensus 26.5 61 0.0013 31.4 2.9 26 28-53 710-735 (960)
30 KOG1164|consensus 25.7 1.3E+02 0.0029 24.5 4.5 32 43-78 106-137 (322)
31 cd06257 DnaJ DnaJ domain or J- 25.3 60 0.0013 19.1 1.8 18 32-49 38-55 (55)
32 smart00271 DnaJ DnaJ molecular 25.1 59 0.0013 19.6 1.8 17 33-49 41-57 (60)
33 PF08651 DASH_Duo1: DASH compl 24.2 2.4E+02 0.0051 19.1 5.7 22 30-51 3-24 (78)
34 PF02945 Endonuclease_7: Recom 23.2 71 0.0015 21.9 2.1 13 62-74 68-80 (81)
35 PF12497 ERbeta_N: Estrogen re 23.1 73 0.0016 23.4 2.2 30 107-137 35-64 (110)
36 PF10392 COG5: Golgi transport 22.7 1.6E+02 0.0036 21.3 4.1 19 34-52 78-96 (132)
37 KOG1748|consensus 20.6 45 0.00098 25.2 0.7 23 56-78 106-128 (131)
No 1
>KOG4029|consensus
Probab=99.76 E-value=1.8e-18 Score=138.36 Aligned_cols=65 Identities=49% Similarity=0.777 Sum_probs=61.0
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLMKILETDDII 86 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~-~~klSKi~tLr~Ai~YI~~L~~~L~~~~~~ 86 (138)
...+|..+|+|||.|++.||.+|..||.+||..+. ++||||++|||.||.||.+|+++|+.+...
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 56788899999999999999999999999999888 999999999999999999999999887753
No 2
>KOG3960|consensus
Probab=99.75 E-value=6.5e-18 Score=137.82 Aligned_cols=64 Identities=36% Similarity=0.588 Sum_probs=58.3
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDII 86 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~~ 86 (138)
.++||++|..|||+|.++||+||+.|+++.-..| +++|.||||||.||+||..||.+|++....
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5799999999999999999999999988875444 789999999999999999999999887663
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.64 E-value=7.5e-16 Score=98.08 Aligned_cols=53 Identities=45% Similarity=0.687 Sum_probs=49.5
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy5860 25 RRNTANKKERRRTQSINNAFSDLRECIPNV--PSDTKLSKIKTLRLATSYISYLM 77 (138)
Q Consensus 25 rR~~aN~rER~R~~~iN~af~~LR~~vP~~--~~~~klSKi~tLr~Ai~YI~~L~ 77 (138)
+|..||.+||.|+..||.+|+.|+.+||.. ....|++|++||+.||+||.+||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 588999999999999999999999999984 36789999999999999999996
No 4
>KOG3898|consensus
Probab=99.63 E-value=3.1e-16 Score=128.20 Aligned_cols=65 Identities=43% Similarity=0.579 Sum_probs=60.2
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5860 21 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 85 (138)
Q Consensus 21 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~ 85 (138)
....+|.++|+|||+|||+||+||+.||.+||.++.+.||+||+||+.|-+||..|+.++.....
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~ 132 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIA 132 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCC
Confidence 35678999999999999999999999999999989999999999999999999999998876655
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.58 E-value=1.2e-14 Score=92.75 Aligned_cols=57 Identities=46% Similarity=0.747 Sum_probs=53.2
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 80 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 80 (138)
.+|..||..||.|+..||.+|+.|+..||....+.|++|+.||+.|++||.+|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999998766889999999999999999999865
No 6
>smart00353 HLH helix loop helix domain.
Probab=99.48 E-value=1.6e-13 Score=86.14 Aligned_cols=52 Identities=48% Similarity=0.780 Sum_probs=48.1
Q ss_pred hHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 30 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 30 N~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
|..||.|+..||.+|+.|+..||......|++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999986668899999999999999999998764
No 7
>KOG4395|consensus
Probab=99.42 E-value=2.7e-13 Score=111.00 Aligned_cols=63 Identities=43% Similarity=0.566 Sum_probs=58.8
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5860 23 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 85 (138)
Q Consensus 23 ~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~ 85 (138)
+.||.++|+|||+||+.||.||+.||..||....++||||.+||+.|-.||..|..+|.....
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~ 234 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMS 234 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccc
Confidence 467889999999999999999999999999999999999999999999999999999966544
No 8
>KOG4447|consensus
Probab=99.35 E-value=3.6e-13 Score=103.29 Aligned_cols=61 Identities=56% Similarity=0.889 Sum_probs=57.1
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETD 83 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~ 83 (138)
-..+|.-||.|||+|.++||+||..||..||++|.+ |||||.||++|..||.+|..+|..+
T Consensus 75 ~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~ 135 (173)
T KOG4447|consen 75 LQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 135 (173)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccc
Confidence 345899999999999999999999999999998865 9999999999999999999999877
No 9
>KOG0561|consensus
Probab=99.27 E-value=1.6e-11 Score=103.03 Aligned_cols=63 Identities=41% Similarity=0.516 Sum_probs=54.3
Q ss_pred CCCchhHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 15 ADLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 15 ~~~~~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
...+..|+ -||.-||..||+||++||.+|..||.+||. -.++||||..||+...+||..|...
T Consensus 51 t~~D~erR-mRReIANsNERRRMQSINAGFqsLr~LlPr-~eGEKLSKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 51 TSLDPERR-MRREIANSNERRRMQSINAGFQSLRALLPR-KEGEKLSKAAILQQTADYIHQLEGH 113 (373)
T ss_pred cccCHHHH-HHHHhhcchHHHHHHhhhHHHHHHHHhcCc-ccchhhHHHHHHHHHHHHHHHHHhc
Confidence 34445444 578889999999999999999999999997 4567999999999999999999863
No 10
>KOG3910|consensus
Probab=99.25 E-value=8.7e-12 Score=109.94 Aligned_cols=73 Identities=29% Similarity=0.361 Sum_probs=64.1
Q ss_pred hHHHHHHhHhhHHHHHhHHHHHHHHHHH-HhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCchhHHH
Q psy5860 20 IRVVKRRNTANKKERRRTQSINNAFSDL-RECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISIDDFK 92 (138)
Q Consensus 20 ~~~~~rR~~aN~rER~R~~~iN~af~~L-R~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~~~~~~~~ 92 (138)
.|.++||.+.|+|||.|+++||+||.+| |.|.-++..+|-.+|+-||..|+..|-.|++++++...++.....
T Consensus 521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLNPKaacl 594 (632)
T KOG3910|consen 521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLNPKAACL 594 (632)
T ss_pred hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCChhhhhh
Confidence 4578899999999999999999999999 666666778999999999999999999999999988777754433
No 11
>KOG1319|consensus
Probab=99.02 E-value=1.3e-09 Score=86.46 Aligned_cols=69 Identities=25% Similarity=0.487 Sum_probs=56.0
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHh
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPS----DTKLSKIKTLRLATSYISYLMKILETDDIISIDDFKA 93 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~----~~klSKi~tLr~Ai~YI~~L~~~L~~~~~~~~~~~~~ 93 (138)
+||.+|..-||+|+.-||.+|+.|+.+||.... +.|+||..||+++|+||.+|.+...+.++ +...+++
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~-e~s~L~k 133 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE-EVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 356679999999999999999999999998443 45999999999999999999886655544 3334443
No 12
>KOG1318|consensus
Probab=98.82 E-value=1.5e-08 Score=88.05 Aligned_cols=66 Identities=30% Similarity=0.470 Sum_probs=56.5
Q ss_pred CCchhHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 16 DLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 16 ~~~~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~-~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
..-..|-++||..||+.||+|+-.||..+.+|..+||.. ..+-|+.|-.||+.+++||+.|++.++
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 344455677788899999999999999999999999983 356688899999999999999998665
No 13
>KOG2483|consensus
Probab=98.36 E-value=8.9e-07 Score=72.06 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=51.7
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 23 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 23 ~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
...|..||+-||+|+..|...|+.||+.||.+..+++-.-+.||++|.+||..|+....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 45799999999999999999999999999987655555589999999999999987543
No 14
>KOG2588|consensus
Probab=98.20 E-value=2.8e-06 Score=79.91 Aligned_cols=56 Identities=32% Similarity=0.491 Sum_probs=51.3
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
.+|.+||..|++.+.+||+.+.+||+.||. .+-|+.|-++||.||+||++|+...+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g--~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPG--TEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCc--cHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 579999999999999999999999999984 56799999999999999999997543
No 15
>KOG3561|consensus
Probab=97.88 E-value=2.1e-05 Score=73.40 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=52.8
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 21 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 21 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~-~~~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
+.+..|..+|.-||+|+.++|..+++|-..||.. .-.+|+-|..|||+||..|+.+..+
T Consensus 16 k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 16 KDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4456799999999999999999999999999983 3568999999999999999988875
No 16
>KOG4304|consensus
Probab=97.76 E-value=2.7e-05 Score=64.00 Aligned_cols=55 Identities=25% Similarity=0.428 Sum_probs=47.0
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 25 RRNTANKKERRRTQSINNAFSDLRECIPNV-PS----DTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 25 rR~~aN~rER~R~~~iN~af~~LR~~vP~~-~~----~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
|+..+-.-||+|+.-||+.+++||++|+.. .. -.||-|.+||.++++|.+.|+..
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 444567889999999999999999999972 22 26999999999999999999874
No 17
>KOG4447|consensus
Probab=97.31 E-value=0.00013 Score=56.36 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=49.2
Q ss_pred HHHHHhHhhHH-HHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 22 VVKRRNTANKK-ERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 22 ~~~rR~~aN~r-ER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
.+..|.-+|.+ ||.|.+.+|.+|.-|+..+|..|.+ +.+|+.+|+.+..||.+|.++
T Consensus 18 ~~~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~ 75 (173)
T KOG4447|consen 18 GVSEEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDEL 75 (173)
T ss_pred chhhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHH
Confidence 44556666677 9999999999999999999987765 789999999999999999874
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.87 E-value=0.024 Score=40.05 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 35 RRTQSINNAFSDLRECIPNVP---SDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 35 ~R~~~iN~af~~LR~~vP~~~---~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
---..||+-...|+..||... ...|.|-..+|+.++.||+.|+..+++
T Consensus 17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDd 67 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDD 67 (93)
T ss_pred CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 334579999999999999843 345888889999999999999986654
No 19
>KOG3558|consensus
Probab=91.21 E-value=0.35 Score=45.23 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q psy5860 31 KKERRRTQSINNAFSDLRECIPNVPS--DTKLSKIKTLRLATSYISYLMKILETDD 84 (138)
Q Consensus 31 ~rER~R~~~iN~af~~LR~~vP~~~~--~~klSKi~tLr~Ai~YI~~L~~~L~~~~ 84 (138)
.--|.|+.+=|.-|.+|..+|| +|. .-.|-|+.|+|+||.|.+ |.+++...+
T Consensus 52 dAARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~ 105 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGD 105 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCC
Confidence 3457888999999999999999 553 458999999999999997 566664443
No 20
>KOG3560|consensus
Probab=81.90 E-value=1.4 Score=40.65 Aligned_cols=45 Identities=31% Similarity=0.617 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCCCCCCC--CCCCHHHHHHHHHHHHH---HHHHHHhhcCC
Q psy5860 40 INNAFSDLRECIPNVPSD--TKLSKIKTLRLATSYIS---YLMKILETDDI 85 (138)
Q Consensus 40 iN~af~~LR~~vP~~~~~--~klSKi~tLr~Ai~YI~---~L~~~L~~~~~ 85 (138)
||.-++.|..+||. +.+ -||-|+.|||+++.|++ +.+-+|+....
T Consensus 40 LNaELD~lAsLLPf-pqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~ 89 (712)
T KOG3560|consen 40 LNAELDHLASLLPF-PQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSR 89 (712)
T ss_pred hhhHHHHHHHhcCC-CHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCcc
Confidence 89999999999996 443 49999999999999997 45666665544
No 21
>KOG3559|consensus
Probab=70.90 E-value=4.6 Score=36.25 Aligned_cols=46 Identities=28% Similarity=0.422 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 33 ERRRTQSINNAFSDLRECIPNVP-SDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 33 ER~R~~~iN~af~~LR~~vP~~~-~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
-|.|+..=|--|.+|.+.+|-.. -.-.+-|..|+|++..||..=.-
T Consensus 9 A~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~v 55 (598)
T KOG3559|consen 9 ARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNV 55 (598)
T ss_pred HHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHh
Confidence 35677778999999999999521 12359999999999999985443
No 22
>KOG4395|consensus
Probab=58.50 E-value=2.4 Score=35.51 Aligned_cols=45 Identities=51% Similarity=0.815 Sum_probs=36.7
Q ss_pred HHHHHhHhh-HHHHHhHHHHHHHHHHHHhhCC------CCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 22 VVKRRNTAN-KKERRRTQSINNAFSDLRECIP------NVPSDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 22 ~~~rR~~aN-~rER~R~~~iN~af~~LR~~vP------~~~~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
.+.+|..+| ++| +| |.||| ..+.+.++.|+.+++.+..||..+..
T Consensus 79 ~~~l~~~~n~a~e------~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~~~~ 130 (285)
T KOG4395|consen 79 SKYLRKTANAARE------IN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITMLTD 130 (285)
T ss_pred HHhhhhhhhHHHH------Hh------hhccccccccccCchhhhhhcccccccccCCCcCCcc
Confidence 678888888 555 55 88998 34567899999999999999998875
No 23
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=56.62 E-value=17 Score=28.07 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=23.0
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCC
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIP 52 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP 52 (138)
+-|.....|||+|+.---..|.-||.+=-
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555567999999988999999998753
No 24
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=43.27 E-value=12 Score=23.68 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 42 NAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 42 ~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
+|.+.||..+-.-+-=..-.+|.+|..|.+-|.+=|+
T Consensus 11 DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 11 DAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp -HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 5777787777443323355689999999999988764
No 25
>PRK02724 hypothetical protein; Provisional
Probab=39.92 E-value=34 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 41 NNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 41 N~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
++|.+.||..|-.-+-=-+-.+|.+|..|.+-|++=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47889999988554433356689999999999999998
No 26
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=36.16 E-value=43 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 41 NNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 41 N~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
++|-+.||..+-.-+-=-+-.+|.+|..|++-|.+=|+.
T Consensus 39 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe~ 77 (99)
T CHL00163 39 TDAWELLKLELESKPWISEDERIEILNKTTEIINYWQEN 77 (99)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 368889999885544333566899999999999999983
No 27
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.47 E-value=59 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.9
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhcCC
Q psy5860 62 KI-KTLRLATSYISYLMKILETDDI 85 (138)
Q Consensus 62 Ki-~tLr~Ai~YI~~L~~~L~~~~~ 85 (138)
|+ .+++.+|+|+-+.++.|.....
T Consensus 59 klfrLaQl~ieYLl~~q~~L~~~~~ 83 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQEYLSSQLE 83 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 8999999999999998866533
No 28
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=28.42 E-value=55 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5860 64 KTLRLATSYISYLMKIL 80 (138)
Q Consensus 64 ~tLr~Ai~YI~~L~~~L 80 (138)
...+.|.+||+.|+..|
T Consensus 123 nLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 123 NLMQAAAEYIEWLETQL 139 (140)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 47899999999998765
No 29
>KOG1189|consensus
Probab=26.50 E-value=61 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.8
Q ss_pred HhhHHHHHhHHHHHHHHHHHHhhCCC
Q psy5860 28 TANKKERRRTQSINNAFSDLRECIPN 53 (138)
Q Consensus 28 ~aN~rER~R~~~iN~af~~LR~~vP~ 53 (138)
.+..+||+|++.||.+|...-..||.
T Consensus 710 ~~EQ~Er~rr~~ln~~FksF~~kv~~ 735 (960)
T KOG1189|consen 710 EQEQEERDRRAKLNMAFKSFAEKVAE 735 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999888864
No 30
>KOG1164|consensus
Probab=25.75 E-value=1.3e+02 Score=24.48 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 43 AFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 43 af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
-+.+||...| ++++|+-.+|+.|++-|..|+.
T Consensus 106 sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~ 137 (322)
T KOG1164|consen 106 SLEDLRKRNP----PGRFSRKTVLRIAIQNLNALED 137 (322)
T ss_pred cHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHH
Confidence 3455666665 5799999999999999999985
No 31
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=25.31 E-value=60 Score=19.11 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.4
Q ss_pred HHHHhHHHHHHHHHHHHh
Q psy5860 32 KERRRTQSINNAFSDLRE 49 (138)
Q Consensus 32 rER~R~~~iN~af~~LR~ 49 (138)
.-..+...||.||+.|.+
T Consensus 38 ~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 38 EAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 356788999999999863
No 32
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=25.09 E-value=59 Score=19.55 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHh
Q psy5860 33 ERRRTQSINNAFSDLRE 49 (138)
Q Consensus 33 ER~R~~~iN~af~~LR~ 49 (138)
-..+...||.||+.|++
T Consensus 41 ~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 41 AEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34588889999999975
No 33
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.21 E-value=2.4e+02 Score=19.14 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.0
Q ss_pred hHHHHHhHHHHHHHHHHHHhhC
Q psy5860 30 NKKERRRTQSINNAFSDLRECI 51 (138)
Q Consensus 30 N~rER~R~~~iN~af~~LR~~v 51 (138)
-.+|..-++.||..|+.+-..|
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L 24 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETL 24 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999886655
No 34
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=23.16 E-value=71 Score=21.89 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy5860 62 KIKTLRLATSYIS 74 (138)
Q Consensus 62 Ki~tLr~Ai~YI~ 74 (138)
-++.|+.||+|+.
T Consensus 68 ~~~~L~~a~~YLe 80 (81)
T PF02945_consen 68 NPEFLRRAIDYLE 80 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 3689999999985
No 35
>PF12497 ERbeta_N: Estrogen receptor beta; InterPro: IPR021064 This entry represents estrogen receptor beta (ERbeta) and is found in eukaryotes, approximately 110 amino acids in length. The proteins are found in association with PF00104 from PFAM, PF00105 from PFAM. There is a conserved IPS sequence motif and there are two completely conserved residues (Y and W) that may be functionally important. ERbeta binds estrogens with an affinity similar to that of ERalpha, and activates expression of reporter genes containing estrogen response elements in an estrogen-dependent manner. ERbeta acts as a transcription factor once bound to its ligand and it can dimerise with ERalpha [].
Probab=23.12 E-value=73 Score=23.40 Aligned_cols=30 Identities=40% Similarity=0.504 Sum_probs=21.6
Q ss_pred CCCCCCcCCCCCCCCccCCcCCCCCCCCCCC
Q psy5860 107 QYDSPSEISSNQSSQYVMDPSCQQYTSPALF 137 (138)
Q Consensus 107 ~~~sps~~sS~s~~~~~~d~~~~~~~~p~~~ 137 (138)
-|-+|.-++++..+ ..+++..+|.++|.+|
T Consensus 35 ~FYSPsv~~Y~~p~-~s~~~sv~qslSPslf 64 (110)
T PF12497_consen 35 TFYSPSVLSYSRPS-ISDCPSVRQSLSPSLF 64 (110)
T ss_pred cccCccccccCCCC-CCCCccccccCCcccc
Confidence 35566777776555 5566668899999998
No 36
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=22.66 E-value=1.6e+02 Score=21.33 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHhhCC
Q psy5860 34 RRRTQSINNAFSDLRECIP 52 (138)
Q Consensus 34 R~R~~~iN~af~~LR~~vP 52 (138)
+..+..|+..|+.||..|-
T Consensus 78 ~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 78 RSSVESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578899999999998873
No 37
>KOG1748|consensus
Probab=20.60 E-value=45 Score=25.17 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 56 SDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 56 ~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
.+++.-|+.+.+.|++||..+.+
T Consensus 106 pd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 106 PDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred CcchhhhhCCHHHHHHHHHhccc
Confidence 36788999999999999987643
Done!