Query psy5860
Match_columns 138
No_of_seqs 151 out of 785
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:55:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 2.2E-25 7.4E-30 145.6 8.2 58 25-82 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 2.7E-24 9.3E-29 143.7 8.0 60 22-82 9-68 (68)
3 2lfh_A DNA-binding protein inh 99.8 2.2E-22 7.6E-27 134.2 2.6 52 27-78 16-67 (68)
4 4aya_A DNA-binding protein inh 99.8 3.1E-21 1.1E-25 136.7 7.2 62 24-85 24-85 (97)
5 3u5v_A Protein MAX, transcript 99.8 1.6E-19 5.5E-24 122.8 5.2 64 23-86 3-67 (76)
6 1nkp_A C-MYC, MYC proto-oncoge 99.7 4.6E-17 1.6E-21 113.1 8.0 59 23-81 4-62 (88)
7 1hlo_A Protein (transcription 99.7 3.7E-17 1.3E-21 111.3 7.2 60 22-82 9-68 (80)
8 1nkp_B MAX protein, MYC proto- 99.7 1E-16 3.6E-21 109.5 7.0 58 24-82 1-58 (83)
9 1nlw_A MAD protein, MAX dimeri 99.7 1.9E-16 6.6E-21 108.3 7.1 57 25-81 1-57 (80)
10 1am9_A Srebp-1A, protein (ster 99.6 1E-14 3.5E-19 99.8 7.5 60 22-83 3-62 (82)
11 1an4_A Protein (upstream stimu 99.5 1.9E-15 6.4E-20 98.9 0.9 56 24-79 4-62 (65)
12 4h10_B Circadian locomoter out 99.5 1.8E-13 6.1E-18 91.9 7.8 59 22-82 5-63 (71)
13 4ati_A MITF, microphthalmia-as 99.5 1.1E-13 3.8E-18 100.6 7.3 67 15-81 17-84 (118)
14 1a0a_A BHLH, protein (phosphat 99.5 1.3E-14 4.6E-19 95.1 1.5 56 25-80 2-61 (63)
15 4h10_A ARYL hydrocarbon recept 99.4 2.3E-13 7.7E-18 91.7 5.1 60 20-79 4-64 (73)
16 4f3l_A Mclock, circadian locom 98.9 1.8E-09 6.3E-14 88.9 6.6 59 21-81 8-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 1.4E-08 4.7E-13 84.8 5.1 60 19-78 7-67 (387)
18 4ath_A MITF, microphthalmia-as 98.3 2.5E-06 8.5E-11 58.6 6.6 44 38-81 5-49 (83)
19 3muj_A Transcription factor CO 94.4 0.078 2.7E-06 39.2 5.7 39 39-77 95-134 (138)
20 3mlp_A Transcription factor CO 75.2 0.53 1.8E-05 39.9 -0.3 40 39-78 321-361 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 40.6 19 0.00066 19.1 2.1 20 59-78 1-20 (26)
22 2jpw_A Troponin I, cardiac mus 34.9 6.3 0.00022 21.8 -0.5 24 5-32 5-28 (32)
23 1iur_A KIAA0730 protein; DNAJ 33.3 38 0.0013 22.2 3.2 19 35-53 58-76 (88)
24 2kt9_A Probable 30S ribosomal 28.6 29 0.00098 24.7 2.0 40 42-81 46-85 (116)
25 1faf_A Large T antigen; J doma 28.0 38 0.0013 21.5 2.4 17 35-51 50-66 (79)
26 2guz_A Mitochondrial import in 22.2 55 0.0019 20.2 2.3 16 35-50 52-67 (71)
27 1p3q_Q VPS9P, vacuolar protein 22.1 93 0.0032 19.0 3.2 23 33-55 5-27 (54)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.92 E-value=2.2e-25 Score=145.64 Aligned_cols=58 Identities=47% Similarity=0.679 Sum_probs=56.1
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 25 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 25 rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
+|.+||+|||+||++||.||+.||++||..+.++||||++||+.||+||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999999999999999999999999999975
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.91 E-value=2.7e-24 Score=143.66 Aligned_cols=60 Identities=35% Similarity=0.568 Sum_probs=56.3
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
..++|.+||+|||+||++||.||+.||++||..+ ++||||++||+.||+||.+|+++|++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 5688999999999999999999999999999865 78999999999999999999999864
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=134.25 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=49.7
Q ss_pred hHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 27 NTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 27 ~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
..+|+|||+||++||.||+.||++||.++.++|||||+|||.||+||.+||.
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4679999999999999999999999999999999999999999999999985
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=136.71 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=52.6
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDI 85 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~ 85 (138)
.|++....+||.||+.||.||+.||++||..+.++|||||+|||.||+||.+|+++|++.+.
T Consensus 24 ~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 24 SRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444456779999999999999999999999999999999999999999999999998766
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.78 E-value=1.6e-19 Score=122.77 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=52.9
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5860 23 VKRRNTANKKERRRTQSINNAFSDLRECIPN-VPSDTKLSKIKTLRLATSYISYLMKILETDDII 86 (138)
Q Consensus 23 ~~rR~~aN~rER~R~~~iN~af~~LR~~vP~-~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~~~~ 86 (138)
.++|..||++||+|+..||.+|++||++||. .+.++++||++||+.||+||.+|++.|++.+..
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999999995 556666799999999999999999999877664
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.70 E-value=4.6e-17 Score=113.11 Aligned_cols=59 Identities=31% Similarity=0.435 Sum_probs=55.3
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 23 VKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 23 ~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
..+|..||+.||+|+..||.+|+.||++||.++.+.|+||+.||+.||+||.+|+....
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998878999999999999999999998654
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=3.7e-17 Score=111.27 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=54.7
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
...+|..||++||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||.+|+..++.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999865 46899999999999999999987654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.67 E-value=1e-16 Score=109.49 Aligned_cols=58 Identities=33% Similarity=0.571 Sum_probs=52.6
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
++|..||.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||+||.+|+..++.
T Consensus 1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999855 56899999999999999999976543
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=1.9e-16 Score=108.33 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=53.4
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 25 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 25 rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
.|..||+.||+|+..||.+|+.||+.||.++.+.|+||+.||+.|++||..|+....
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999998888999999999999999999998554
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.55 E-value=1e-14 Score=99.84 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=54.4
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETD 83 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~~ 83 (138)
...+|..||..||+|+..||.+|.+|+.+||. .+.|++|+.||..||+||.+|+..++.-
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999996 3579999999999999999999977654
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=1.9e-15 Score=98.91 Aligned_cols=56 Identities=38% Similarity=0.453 Sum_probs=50.5
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q psy5860 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSD---TKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 24 ~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~---~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
.+|..||..||+|+..||.+|.+|+.+||..... .|++|+.||+.||+||.+|+..
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999985543 5899999999999999999863
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=91.92 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=53.5
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5860 22 VVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82 (138)
Q Consensus 22 ~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 82 (138)
...+|..+|..||+|+..||..|.+|+.+||. .+.|+.|..||+.||+||..|+..+.-
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 45789999999999999999999999999994 457999999999999999999987654
No 13
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.46 E-value=1.1e-13 Score=100.60 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 15 ADLPIIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVP-SDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 15 ~~~~~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~-~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
......+...+|..||..||+|+..||..|..|+.+||... .+.|++|..||..||+||.+|+...+
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778889999999999999999999999999753 36799999999999999999998654
No 14
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.45 E-value=1.3e-14 Score=95.08 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=50.1
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5860 25 RRNTANKKERRRTQSINNAFSDLRECIPNVP----SDTKLSKIKTLRLATSYISYLMKIL 80 (138)
Q Consensus 25 rR~~aN~rER~R~~~iN~af~~LR~~vP~~~----~~~klSKi~tLr~Ai~YI~~L~~~L 80 (138)
+|..|+.-||.|+..||.+|++|+.+||... .+.|+||.+||..||+||.+|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999632 2579999999999999999998754
No 15
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=91.73 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=52.8
Q ss_pred hHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5860 20 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMKI 79 (138)
Q Consensus 20 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~-~~~~klSKi~tLr~Ai~YI~~L~~~ 79 (138)
++...+|..|+..||+|+..||.+|++|+.+||.. ....|+.|+.||+.||+||..|+..
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 45677899999999999999999999999999963 3457999999999999999999754
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=1.8e-09 Score=88.94 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=44.2
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 21 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 21 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
+...+|..||..||+|+..||..|.+|+.+|| ....||.|+.||++||+||+.|+.+-.
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 45678889999999999999999999999999 346799999999999999999987643
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.68 E-value=1.4e-08 Score=84.79 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=50.5
Q ss_pred hhHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy5860 19 IIRVVKRRNTANKKERRRTQSINNAFSDLRECIPNVP-SDTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 19 ~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~vP~~~-~~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
..|...+|..||..||+|+..||..|.+|+.+||... ...||.|..||++||+||+.|+.
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3456678899999999999999999999999999522 45799999999999999999873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.25 E-value=2.5e-06 Score=58.59 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 38 QSINNAFSDLRECIPNV-PSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 38 ~~iN~af~~LR~~vP~~-~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
-.||..|.+|...||.. ..+-|.+|-.||+.|++||.+|++..+
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999963 457799999999999999999988543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=94.45 E-value=0.078 Score=39.23 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Q psy5860 39 SINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLM 77 (138)
Q Consensus 39 ~iN~af~~LR~~vP~~~~-~~klSKi~tLr~Ai~YI~~L~ 77 (138)
.|+-+|.+|.+.||-.+. .++|.|--||++|.++...|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 488999999999998664 469999999999999998774
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=75.17 E-value=0.53 Score=39.88 Aligned_cols=40 Identities=28% Similarity=0.456 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHH
Q psy5860 39 SINNAFSDLRECIPNVPS-DTKLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 39 ~iN~af~~LR~~vP~~~~-~~klSKi~tLr~Ai~YI~~L~~ 78 (138)
.|.-+|.+|.+.||-.|. .++|.|--||+.|.+++..|-.
T Consensus 321 tIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy~ 361 (402)
T 3mlp_A 321 TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYG 361 (402)
T ss_dssp TTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhcC
Confidence 477899999999998664 4699999999999999988743
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=40.62 E-value=19 Score=19.12 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy5860 59 KLSKIKTLRLATSYISYLMK 78 (138)
Q Consensus 59 klSKi~tLr~Ai~YI~~L~~ 78 (138)
++..|++|-.|.+|+.....
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 45678999999999997765
No 22
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=34.85 E-value=6.3 Score=21.85 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCchhHHHHHHhHhhHH
Q psy5860 5 SGYHPPPLYTADLPIIRVVKRRNTANKK 32 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~rR~~aN~r 32 (138)
++-++.++.+++.|. +||..||-|
T Consensus 5 ~~~~~~~~~PaP~p~----RRrSSANYR 28 (32)
T 2jpw_A 5 SSDAAGEPQPAPAPV----RRRSSANYR 28 (32)
T ss_dssp THHHHSCCCCCCCCC----CCTTHHHHH
T ss_pred cccCCCCCCCCCccc----ccccccccc
Confidence 333445556666664 677778876
No 23
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=33.29 E-value=38 Score=22.20 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHhhCCC
Q psy5860 35 RRTQSINNAFSDLRECIPN 53 (138)
Q Consensus 35 ~R~~~iN~af~~LR~~vP~ 53 (138)
.+.+.||.||+.|.+..+.
T Consensus 58 ~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 58 EVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4667777777777776654
No 24
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=28.62 E-value=29 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5860 42 NAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81 (138)
Q Consensus 42 ~af~~LR~~vP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 81 (138)
+|.+.||..|-.-+-=.+-.+|.+|..|.+-|++=|+.-.
T Consensus 46 DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe~~~ 85 (116)
T 2kt9_A 46 DAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQDLKN 85 (116)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5778888877443333356789999999999999998433
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=27.99 E-value=38 Score=21.50 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHhhC
Q psy5860 35 RRTQSINNAFSDLRECI 51 (138)
Q Consensus 35 ~R~~~iN~af~~LR~~v 51 (138)
.+++.||.||+.|++.+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 57899999999998743
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=22.23 E-value=55 Score=20.20 Aligned_cols=16 Identities=25% Similarity=0.054 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHhh
Q psy5860 35 RRTQSINNAFSDLREC 50 (138)
Q Consensus 35 ~R~~~iN~af~~LR~~ 50 (138)
.+++.||.|++.|.+.
T Consensus 52 ~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 52 FLATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3789999999999874
No 27
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=22.12 E-value=93 Score=19.03 Aligned_cols=23 Identities=9% Similarity=0.349 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHhhCCCCC
Q psy5860 33 ERRRTQSINNAFSDLRECIPNVP 55 (138)
Q Consensus 33 ER~R~~~iN~af~~LR~~vP~~~ 55 (138)
+|-++...+.+++.|+...|.+.
T Consensus 5 ~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 5 KKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHcccCC
Confidence 45556667899999999999876
Done!