RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5860
(138 letters)
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 59.5 bits (144), Expect = 1e-13
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 21 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 80
RR A +ERRR +N AF L+ + P + +L K++ LR A YI L +L
Sbjct: 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66
Query: 81 E 81
Sbjct: 67 R 67
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 59.9 bits (145), Expect = 2e-13
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 21 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKIL 80
+ +R T N ER+R + +F LR+ IP + ++ K K+ L+ AT+YI +
Sbjct: 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61
Query: 81 ET 82
+
Sbjct: 62 QK 63
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 57.2 bits (138), Expect = 1e-12
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 26 RNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81
R+T N+ E+ R + + L+ +P P ++ + + L A +I L
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 55.9 bits (135), Expect = 2e-12
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 24 KRRNTANKKERRRTQSINNAFSDLRECIPNV---PSDTKLSKIKTLRLATSYISYLMK 78
KRR N+ ERRR INN L + IP+ + + SK L A+ YI L +
Sbjct: 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 55.3 bits (133), Expect = 5e-12
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 25 RRNTANKKERRRTQSINNAFSDLRECIPNVP----SDTKLSKIKTLRLATSYISYLMKIL 80
+R + E+ R + A +L IP SK T+ A YI +L +
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61
Query: 81 ET 82
T
Sbjct: 62 ST 63
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 54.5 bits (131), Expect = 2e-11
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 25 RRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILET 82
+R N ER+R I ++F LR+ +P++ + K S+ + L AT YI Y+ + T
Sbjct: 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHT 58
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 45.7 bits (108), Expect = 3e-08
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 24 KRRNTANKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81
++R N E+R SIN+ +L++ + ++ KL+K LR A YI +L +
Sbjct: 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQ 60
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 30.1 bits (68), Expect = 0.018
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 39 SINNAFSDLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILE 81
SIN+ +L++ + +D K+ K LR A YI YL ++
Sbjct: 3 SINDKIIELKDLVMG--TDAKMHKSGVLRKAIDYIKYLQQVNH 43
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 24.6 bits (53), Expect = 4.0
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 30 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLAT--SYISYLMKILETDDIIS 87
+ E++R + N DLR + K+K L + L + L +
Sbjct: 5 TEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFV 64
Query: 88 IDDFK-ADL 95
D D
Sbjct: 65 GDKLTFVDF 73
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 24.6 bits (53), Expect = 4.6
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 46 DLRECIPNVPSDTKLSKIKTLRLATSYISYLMKILETDDIISI 88
L++ + V + + + + + L ++LE DI+
Sbjct: 14 GLKDVVV-VSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGF 55
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 133
Score = 24.2 bits (52), Expect = 4.7
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 30 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLAT--SYISYLMKILETDDIIS 87
++KE+ R + N F D R + + D K+K L + + L
Sbjct: 5 SEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFL 64
Query: 88 IDDF 91
D
Sbjct: 65 GDKI 68
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 24.0 bits (51), Expect = 6.3
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 83 DDIISIDDFKADLSNHSSHRKNKSQYDS 110
D +++ +F+ S + S YD
Sbjct: 158 DGKLTLQEFQEGSKADPSIVQALSLYDG 185
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 133
Score = 23.8 bits (51), Expect = 7.6
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 30 NKKERRRTQSINNAFSDLRECIPNVPSDTKLSKIKTLRLAT--SYISYLMKILETDDIIS 87
++ER R + N D R + + + K K L T + + L +
Sbjct: 5 TEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFA 64
Query: 88 IDDF 91
D
Sbjct: 65 GDKV 68
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 24.3 bits (52), Expect = 8.1
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 71 SYISYLMKILETDDIISIDDFKADLSNHSSHRKNKSQYDSPSEI 114
Y ++ + ++ L N RK QY +P+ I
Sbjct: 424 GYNAW-RRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 466
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.127 0.355
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,189
Number of extensions: 19125
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 16
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.8 bits)